0s autopkgtest [02:21:29]: starting date and time: 2024-07-27 02:21:29+0000 0s autopkgtest [02:21:29]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [02:21:29]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.loypun05/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:ncbi-blast+ --apt-upgrade cct --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=ncbi-blast+/2.16.0+ds-3 -- lxd -r lxd-armhf-10.145.243.171 lxd-armhf-10.145.243.171:autopkgtest/ubuntu/oracular/armhf 119s autopkgtest [02:23:28]: testbed dpkg architecture: armhf 122s autopkgtest [02:23:31]: testbed apt version: 2.9.6 122s autopkgtest [02:23:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 154s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 168s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B] 168s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 168s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [51.2 kB] 168s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [401 kB] 169s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [65.2 kB] 169s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1428 B] 169s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 169s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B] 169s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [299 kB] 169s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6916 B] 169s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [2072 B] 169s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B] 176s Fetched 967 kB in 22s (44.7 kB/s) 177s Reading package lists... 204s tee: /proc/self/fd/2: Permission denied 243s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 243s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 243s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 243s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 247s Reading package lists... 247s Reading package lists... 247s Building dependency tree... 247s Reading state information... 248s Calculating upgrade... 248s The following package was automatically installed and is no longer required: 248s python3-six 248s Use 'apt autoremove' to remove it. 248s The following packages will be upgraded: 248s bind9-dnsutils bind9-host bind9-libs binutils binutils-arm-linux-gnueabihf 248s binutils-common cloud-init dmsetup gcc-14-base gdisk kpartx libbinutils 248s libbpf1 libctf-nobfd0 libctf0 libdevmapper1.02.1 libgcc-s1 liblz4-1 libnspr4 248s libp11-kit0 libsframe1 libstdc++6 libudisks2-0 libxml2 logrotate mawk 248s multipath-tools netcat-openbsd networkd-dispatcher pci.ids 248s python3-launchpadlib rsyslog strace systemd-hwe-hwdb ubuntu-pro-client 248s ubuntu-pro-client-l10n udisks2 249s 37 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 249s Need to get 10.6 MB of archives. 249s After this operation, 35.8 kB of additional disk space will be used. 249s Get:1 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-14-base armhf 14.1.0-5ubuntu1 [49.8 kB] 249s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libstdc++6 armhf 14.1.0-5ubuntu1 [711 kB] 249s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libgcc-s1 armhf 14.1.0-5ubuntu1 [40.8 kB] 249s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf liblz4-1 armhf 1.9.4-3 [52.7 kB] 249s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf libp11-kit0 armhf 0.25.5-2ubuntu1 [259 kB] 249s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf mawk armhf 1.3.4.20240622-2 [115 kB] 249s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf libdevmapper1.02.1 armhf 2:1.02.196-1ubuntu1 [135 kB] 249s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf dmsetup armhf 2:1.02.196-1ubuntu1 [81.3 kB] 249s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libbpf1 armhf 1:1.4.5-1 [151 kB] 249s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf libxml2 armhf 2.12.7+dfsg-3 [560 kB] 249s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf logrotate armhf 3.22.0-1 [51.5 kB] 249s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf netcat-openbsd armhf 1.226-1.1 [42.2 kB] 249s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf networkd-dispatcher all 2.2.4-1.1 [15.6 kB] 249s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf rsyslog armhf 8.2406.0-1ubuntu1 [461 kB] 249s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf systemd-hwe-hwdb all 256.2.1 [3210 B] 249s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf ubuntu-pro-client-l10n armhf 33.2 [19.2 kB] 249s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf ubuntu-pro-client armhf 33.2 [232 kB] 249s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf bind9-dnsutils armhf 1:9.18.28-0ubuntu1 [149 kB] 249s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf bind9-host armhf 1:9.18.28-0ubuntu1 [47.5 kB] 249s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf bind9-libs armhf 1:9.18.28-0ubuntu1 [1156 kB] 249s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf pci.ids all 0.0~2024.06.23-1 [278 kB] 249s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf strace armhf 6.8-2 [427 kB] 249s Get:23 http://ftpmaster.internal/ubuntu oracular/main armhf libctf0 armhf 2.42.90.20240720-2ubuntu1 [89.1 kB] 249s Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf libctf-nobfd0 armhf 2.42.90.20240720-2ubuntu1 [88.6 kB] 249s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf binutils-arm-linux-gnueabihf armhf 2.42.90.20240720-2ubuntu1 [2929 kB] 249s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf libbinutils armhf 2.42.90.20240720-2ubuntu1 [459 kB] 249s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf binutils armhf 2.42.90.20240720-2ubuntu1 [3084 B] 249s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf binutils-common armhf 2.42.90.20240720-2ubuntu1 [221 kB] 249s Get:29 http://ftpmaster.internal/ubuntu oracular/main armhf libsframe1 armhf 2.42.90.20240720-2ubuntu1 [12.7 kB] 249s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf libnspr4 armhf 2:4.35-1.1ubuntu1 [93.3 kB] 249s Get:31 http://ftpmaster.internal/ubuntu oracular/main armhf udisks2 armhf 2.10.1-9ubuntu1 [277 kB] 249s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf libudisks2-0 armhf 2.10.1-9ubuntu1 [142 kB] 249s Get:33 http://ftpmaster.internal/ubuntu oracular/main armhf python3-launchpadlib all 2.0.0-1 [126 kB] 249s Get:34 http://ftpmaster.internal/ubuntu oracular/main armhf cloud-init all 24.3~1g6e4153b3-0ubuntu1 [592 kB] 250s Get:35 http://ftpmaster.internal/ubuntu oracular/main armhf gdisk armhf 1.0.10-2 [229 kB] 250s Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf kpartx armhf 0.9.9-1ubuntu2 [34.6 kB] 250s Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf multipath-tools armhf 0.9.9-1ubuntu2 [292 kB] 251s Preconfiguring packages ... 252s Fetched 10.6 MB in 1s (9780 kB/s) 252s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 252s Preparing to unpack .../gcc-14-base_14.1.0-5ubuntu1_armhf.deb ... 252s Unpacking gcc-14-base:armhf (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 252s Setting up gcc-14-base:armhf (14.1.0-5ubuntu1) ... 252s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 252s Preparing to unpack .../libstdc++6_14.1.0-5ubuntu1_armhf.deb ... 253s Unpacking libstdc++6:armhf (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 253s Setting up libstdc++6:armhf (14.1.0-5ubuntu1) ... 253s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 253s Preparing to unpack .../libgcc-s1_14.1.0-5ubuntu1_armhf.deb ... 253s Unpacking libgcc-s1:armhf (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 253s Setting up libgcc-s1:armhf (14.1.0-5ubuntu1) ... 253s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 253s Preparing to unpack .../liblz4-1_1.9.4-3_armhf.deb ... 253s Unpacking liblz4-1:armhf (1.9.4-3) over (1.9.4-2) ... 253s Setting up liblz4-1:armhf (1.9.4-3) ... 253s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 253s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu1_armhf.deb ... 253s Unpacking libp11-kit0:armhf (0.25.5-2ubuntu1) over (0.25.3-4ubuntu2) ... 254s Setting up libp11-kit0:armhf (0.25.5-2ubuntu1) ... 254s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 254s Preparing to unpack .../00-mawk_1.3.4.20240622-2_armhf.deb ... 254s Unpacking mawk (1.3.4.20240622-2) over (1.3.4.20240622-1) ... 254s Preparing to unpack .../01-libdevmapper1.02.1_2%3a1.02.196-1ubuntu1_armhf.deb ... 254s Unpacking libdevmapper1.02.1:armhf (2:1.02.196-1ubuntu1) over (2:1.02.185-3ubuntu4) ... 254s Preparing to unpack .../02-dmsetup_2%3a1.02.196-1ubuntu1_armhf.deb ... 254s Unpacking dmsetup (2:1.02.196-1ubuntu1) over (2:1.02.185-3ubuntu4) ... 254s Preparing to unpack .../03-libbpf1_1%3a1.4.5-1_armhf.deb ... 254s Unpacking libbpf1:armhf (1:1.4.5-1) over (1:1.4.3-1) ... 254s Preparing to unpack .../04-libxml2_2.12.7+dfsg-3_armhf.deb ... 254s Unpacking libxml2:armhf (2.12.7+dfsg-3) over (2.9.14+dfsg-1.3ubuntu3) ... 255s Preparing to unpack .../05-logrotate_3.22.0-1_armhf.deb ... 255s Unpacking logrotate (3.22.0-1) over (3.21.0-2build1) ... 255s Preparing to unpack .../06-netcat-openbsd_1.226-1.1_armhf.deb ... 255s Unpacking netcat-openbsd (1.226-1.1) over (1.226-1ubuntu2) ... 256s Preparing to unpack .../07-networkd-dispatcher_2.2.4-1.1_all.deb ... 256s Unpacking networkd-dispatcher (2.2.4-1.1) over (2.2.4-1) ... 256s Preparing to unpack .../08-rsyslog_8.2406.0-1ubuntu1_armhf.deb ... 256s Unpacking rsyslog (8.2406.0-1ubuntu1) over (8.2312.0-3ubuntu9) ... 256s Preparing to unpack .../09-systemd-hwe-hwdb_256.2.1_all.deb ... 256s Unpacking systemd-hwe-hwdb (256.2.1) over (255.1.3) ... 257s Preparing to unpack .../10-ubuntu-pro-client-l10n_33.2_armhf.deb ... 257s Unpacking ubuntu-pro-client-l10n (33.2) over (33.1) ... 257s Preparing to unpack .../11-ubuntu-pro-client_33.2_armhf.deb ... 259s Unpacking ubuntu-pro-client (33.2) over (33.1) ... 265s Preparing to unpack .../12-bind9-dnsutils_1%3a9.18.28-0ubuntu1_armhf.deb ... 265s Unpacking bind9-dnsutils (1:9.18.28-0ubuntu1) over (1:9.18.24-0ubuntu5) ... 277s Preparing to unpack .../13-bind9-host_1%3a9.18.28-0ubuntu1_armhf.deb ... 277s Unpacking bind9-host (1:9.18.28-0ubuntu1) over (1:9.18.24-0ubuntu5) ... 282s Preparing to unpack .../14-bind9-libs_1%3a9.18.28-0ubuntu1_armhf.deb ... 283s Unpacking bind9-libs:armhf (1:9.18.28-0ubuntu1) over (1:9.18.24-0ubuntu5) ... 286s Preparing to unpack .../15-pci.ids_0.0~2024.06.23-1_all.deb ... 286s Unpacking pci.ids (0.0~2024.06.23-1) over (0.0~2024.05.31-1) ... 289s Preparing to unpack .../16-strace_6.8-2_armhf.deb ... 289s Unpacking strace (6.8-2) over (6.8-0ubuntu2) ... 290s Preparing to unpack .../17-libctf0_2.42.90.20240720-2ubuntu1_armhf.deb ... 290s Unpacking libctf0:armhf (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 291s Preparing to unpack .../18-libctf-nobfd0_2.42.90.20240720-2ubuntu1_armhf.deb ... 291s Unpacking libctf-nobfd0:armhf (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 292s Preparing to unpack .../19-binutils-arm-linux-gnueabihf_2.42.90.20240720-2ubuntu1_armhf.deb ... 292s Unpacking binutils-arm-linux-gnueabihf (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 292s Preparing to unpack .../20-libbinutils_2.42.90.20240720-2ubuntu1_armhf.deb ... 292s Unpacking libbinutils:armhf (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 292s Preparing to unpack .../21-binutils_2.42.90.20240720-2ubuntu1_armhf.deb ... 292s Unpacking binutils (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 292s Preparing to unpack .../22-binutils-common_2.42.90.20240720-2ubuntu1_armhf.deb ... 292s Unpacking binutils-common:armhf (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 292s Preparing to unpack .../23-libsframe1_2.42.90.20240720-2ubuntu1_armhf.deb ... 292s Unpacking libsframe1:armhf (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 293s Preparing to unpack .../24-libnspr4_2%3a4.35-1.1ubuntu1_armhf.deb ... 293s Unpacking libnspr4:armhf (2:4.35-1.1ubuntu1) over (2:4.35-1.1build1) ... 293s Preparing to unpack .../25-udisks2_2.10.1-9ubuntu1_armhf.deb ... 293s Unpacking udisks2 (2.10.1-9ubuntu1) over (2.10.1-9) ... 293s Preparing to unpack .../26-libudisks2-0_2.10.1-9ubuntu1_armhf.deb ... 293s Unpacking libudisks2-0:armhf (2.10.1-9ubuntu1) over (2.10.1-9) ... 293s Preparing to unpack .../27-python3-launchpadlib_2.0.0-1_all.deb ... 294s Unpacking python3-launchpadlib (2.0.0-1) over (1.11.0-6) ... 294s Preparing to unpack .../28-cloud-init_24.3~1g6e4153b3-0ubuntu1_all.deb ... 295s Unpacking cloud-init (24.3~1g6e4153b3-0ubuntu1) over (24.2-0ubuntu1) ... 295s Preparing to unpack .../29-gdisk_1.0.10-2_armhf.deb ... 295s Unpacking gdisk (1.0.10-2) over (1.0.10-1build1) ... 295s Preparing to unpack .../30-kpartx_0.9.9-1ubuntu2_armhf.deb ... 295s Unpacking kpartx (0.9.9-1ubuntu2) over (0.9.4-5ubuntu8) ... 295s Preparing to unpack .../31-multipath-tools_0.9.9-1ubuntu2_armhf.deb ... 296s Unpacking multipath-tools (0.9.9-1ubuntu2) over (0.9.4-5ubuntu8) ... 296s dpkg: warning: unable to delete old directory '/lib/multipath': Directory not empty 296s Setting up logrotate (3.22.0-1) ... 297s logrotate.service is a disabled or a static unit not running, not starting it. 297s Setting up networkd-dispatcher (2.2.4-1.1) ... 298s Setting up pci.ids (0.0~2024.06.23-1) ... 298s Setting up cloud-init (24.3~1g6e4153b3-0ubuntu1) ... 300s Setting up python3-launchpadlib (2.0.0-1) ... 301s Setting up rsyslog (8.2406.0-1ubuntu1) ... 301s info: The user `syslog' is already a member of `adm'. 302s apparmor_parser: Unable to replace "rsyslogd". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 302s 304s Setting up netcat-openbsd (1.226-1.1) ... 304s Setting up binutils-common:armhf (2.42.90.20240720-2ubuntu1) ... 304s Setting up libctf-nobfd0:armhf (2.42.90.20240720-2ubuntu1) ... 304s Setting up libsframe1:armhf (2.42.90.20240720-2ubuntu1) ... 304s Setting up gdisk (1.0.10-2) ... 304s Setting up libnspr4:armhf (2:4.35-1.1ubuntu1) ... 304s Setting up strace (6.8-2) ... 304s Setting up systemd-hwe-hwdb (256.2.1) ... 305s Setting up libdevmapper1.02.1:armhf (2:1.02.196-1ubuntu1) ... 305s Setting up dmsetup (2:1.02.196-1ubuntu1) ... 305s Setting up kpartx (0.9.9-1ubuntu2) ... 305s Setting up mawk (1.3.4.20240622-2) ... 305s Setting up libbinutils:armhf (2.42.90.20240720-2ubuntu1) ... 305s Setting up libxml2:armhf (2.12.7+dfsg-3) ... 305s Setting up ubuntu-pro-client (33.2) ... 305s Installing new version of config file /etc/apparmor.d/ubuntu_pro_apt_news ... 305s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 305s 305s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 305s 305s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 305s 336s Setting up libbpf1:armhf (1:1.4.5-1) ... 336s Setting up libudisks2-0:armhf (2.10.1-9ubuntu1) ... 336s Setting up libctf0:armhf (2.42.90.20240720-2ubuntu1) ... 336s Setting up ubuntu-pro-client-l10n (33.2) ... 336s Setting up udisks2 (2.10.1-9ubuntu1) ... 337s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 337s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 337s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 337s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 337s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 337s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 337s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 337s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 337s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 337s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 337s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 337s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 345s Setting up bind9-libs:armhf (1:9.18.28-0ubuntu1) ... 345s Setting up multipath-tools (0.9.9-1ubuntu2) ... 347s Setting up bind9-host (1:9.18.28-0ubuntu1) ... 347s Setting up binutils-arm-linux-gnueabihf (2.42.90.20240720-2ubuntu1) ... 347s Setting up binutils (2.42.90.20240720-2ubuntu1) ... 347s Setting up bind9-dnsutils (1:9.18.28-0ubuntu1) ... 347s Processing triggers for libc-bin (2.39-0ubuntu9) ... 347s Processing triggers for man-db (2.12.1-2) ... 349s Processing triggers for dbus (1.14.10-4ubuntu4) ... 349s Processing triggers for udev (256-1ubuntu1) ... 349s Processing triggers for initramfs-tools (0.142ubuntu30) ... 350s Reading package lists... 350s Building dependency tree... 350s Reading state information... 351s The following packages will be REMOVED: 351s python3-six* 351s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 351s After this operation, 59.4 kB disk space will be freed. 351s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 351s Removing python3-six (1.16.0-6) ... 354s autopkgtest [02:27:23]: rebooting testbed after setup commands that affected boot 514s autopkgtest [02:30:03]: testbed running kernel: Linux 6.5.0-45-generic #45~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Jul 15 20:13:54 UTC 2 541s autopkgtest [02:30:30]: @@@@@@@@@@@@@@@@@@@@ apt-source cct 558s Get:1 http://ftpmaster.internal/ubuntu oracular/universe cct 1:1.0.3-1 (dsc) [1997 B] 558s Get:2 http://ftpmaster.internal/ubuntu oracular/universe cct 1:1.0.3-1 (tar) [81.7 MB] 558s Get:3 http://ftpmaster.internal/ubuntu oracular/universe cct 1:1.0.3-1 (diff) [11.7 kB] 559s gpgv: Signature made Sun Jan 16 15:11:18 2022 UTC 559s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 559s gpgv: issuer "tille@debian.org" 559s gpgv: Can't check signature: No public key 559s dpkg-source: warning: cannot verify inline signature for ./cct_1.0.3-1.dsc: no acceptable signature found 565s autopkgtest [02:30:54]: testing package cct version 1:1.0.3-1 567s autopkgtest [02:30:56]: build not needed 575s autopkgtest [02:31:04]: test run-unit-test: preparing testbed 607s Reading package lists... 608s Building dependency tree... 608s Reading state information... 609s Starting pkgProblemResolver with broken count: 0 609s Starting 2 pkgProblemResolver with broken count: 0 609s Done 609s The following additional packages will be installed: 609s adwaita-icon-theme at-spi2-common bioperl ca-certificates-java cct 609s cct-examples cgview dconf-gsettings-backend dconf-service default-jre 609s default-jre-headless fontconfig fontconfig-config fonts-dejavu-core 609s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 609s humanity-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 609s java-common java-wrappers libalgorithm-diff-perl libaom3 libapache-pom-java 609s libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 609s libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 609s libbatik-java libbio-perl-perl libcairo-gobject2 libcairo2 609s libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libcolord2 609s libcommons-io-java libcommons-lang-java libcommons-logging-java 609s libcommons-parent-java libcups2t64 libdata-stag-perl libdatrie1 libdconf1 609s libde265-0 libdeflate0 libdevel-stacktrace-perl libdrm-amdgpu1 609s libdrm-nouveau2 libdrm-radeon1 libencode-locale-perl libepoxy0 liberror-perl 609s libexception-class-perl libfftw3-double3 libfile-listing-perl libfontconfig1 609s libfreetype6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 609s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 609s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b 609s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhtml-parser-perl 609s libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl 609s libhttp-message-perl libhttp-negotiate-perl libio-html-perl 609s libio-socket-ssl-perl libio-string-perl libjargs-java libjaxp1.3-java 609s libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17t64 liblqr-1-0 609s libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl 609s libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 libmbedcrypto7t64 609s libmbedtls14t64 libmbedx509-1t64 libnet-http-perl libnet-ssleay-perl 609s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 609s libpcsclite1 libpixman-1-0 libraw23t64 libsharpyuv0 libsub-uplevel-perl 609s libtest-deep-perl libtest-differences-perl libtest-exception-perl 609s libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 609s libtie-ixhash-perl libtiff6 libtimedate-perl libtry-tiny-perl liburi-perl 609s libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 609s libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-xcb1 609s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 609s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 609s libxcursor1 libxdamage1 libxerces2-java libxfixes3 libxi6 libxinerama1 609s libxml-commons-external-java libxml-commons-resolver1.1-java 609s libxmlgraphics-commons-java libxrandr2 libxrender1 libxshmfence1 libxtst6 609s libxxf86vm1 ncbi-blast+ ncbi-blast+-legacy ncbi-data openjdk-21-jre 609s openjdk-21-jre-headless perl-openssl-defaults ubuntu-mono unzip x11-common 609s Suggested packages: 609s imagemagick-6-doc autotrace cups-bsd | lpr | lprng enscript ffmpeg gimp 609s gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance 609s sane-utils texlive-base-bin transfig libraw-bin xdg-utils alsa-utils 609s libasound2-plugins librhino-java libxml-sax-expatxs-perl colord 609s libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java 609s liblog4j1.2-java cups-common libfftw3-bin libfftw3-dev gvfs 609s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 609s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 609s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc 609s libdata-dump-perl libio-compress-brotli-perl liblcms2-utils 609s libcrypt-ssleay-perl libmagickcore-6.q16-7-extra pcscd libsub-name-perl 609s libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl 609s libxerces2-java-doc libxml-commons-resolver1.1-java-doc 609s libxmlgraphics-commons-java-doc libnss-mdns fonts-dejavu-extra 609s fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei 609s | fonts-wqy-zenhei fonts-indic debhelper zip 609s Recommended packages: 609s librsvg2-common bioperl-run perl-doc libcache-cache-perl 609s libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl 609s libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl 609s libxml-twig-perl libset-scalar-perl libmagickcore-6.q16-7-extra ghostscript 609s netpbm libalgorithm-diff-xs-perl alsa-ucm-conf alsa-topology-conf 609s at-spi2-core bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl 609s libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl 609s libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl 609s libgraph-perl libgraphviz-perl libhtml-tableextract-perl libpostscript-perl 609s libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl 609s libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl 609s libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl 609s libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk 609s libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl 609s libxml-perl libgdk-pixbuf2.0-bin libgl1-amber-dri libgtk-3-bin 609s libheif-plugin-aomenc libhtml-format-perl fonts-urw-base35 609s mesa-vulkan-drivers | vulkan-icd libdata-dump-perl libhtml-form-perl 609s libhttp-daemon-perl libmailtools-perl libatk-wrapper-java-jni 609s fonts-dejavu-extra 612s The following NEW packages will be installed: 612s adwaita-icon-theme at-spi2-common autopkgtest-satdep bioperl 612s ca-certificates-java cct cct-examples cgview dconf-gsettings-backend 612s dconf-service default-jre default-jre-headless fontconfig fontconfig-config 612s fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 612s humanity-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 612s java-common java-wrappers libalgorithm-diff-perl libaom3 libapache-pom-java 612s libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 612s libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 612s libbatik-java libbio-perl-perl libcairo-gobject2 libcairo2 612s libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libcolord2 612s libcommons-io-java libcommons-lang-java libcommons-logging-java 612s libcommons-parent-java libcups2t64 libdata-stag-perl libdatrie1 libdconf1 612s libde265-0 libdeflate0 libdevel-stacktrace-perl libdrm-amdgpu1 612s libdrm-nouveau2 libdrm-radeon1 libencode-locale-perl libepoxy0 liberror-perl 612s libexception-class-perl libfftw3-double3 libfile-listing-perl libfontconfig1 612s libfreetype6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 612s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 612s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b 612s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhtml-parser-perl 612s libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl 612s libhttp-message-perl libhttp-negotiate-perl libio-html-perl 612s libio-socket-ssl-perl libio-string-perl libjargs-java libjaxp1.3-java 612s libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17t64 liblqr-1-0 612s libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl 612s libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 libmbedcrypto7t64 612s libmbedtls14t64 libmbedx509-1t64 libnet-http-perl libnet-ssleay-perl 612s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 612s libpcsclite1 libpixman-1-0 libraw23t64 libsharpyuv0 libsub-uplevel-perl 612s libtest-deep-perl libtest-differences-perl libtest-exception-perl 612s libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 612s libtie-ixhash-perl libtiff6 libtimedate-perl libtry-tiny-perl liburi-perl 612s libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 612s libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-xcb1 612s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 612s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 612s libxcursor1 libxdamage1 libxerces2-java libxfixes3 libxi6 libxinerama1 612s libxml-commons-external-java libxml-commons-resolver1.1-java 612s libxmlgraphics-commons-java libxrandr2 libxrender1 libxshmfence1 libxtst6 612s libxxf86vm1 ncbi-blast+ ncbi-blast+-legacy ncbi-data openjdk-21-jre 612s openjdk-21-jre-headless perl-openssl-defaults ubuntu-mono unzip x11-common 614s 0 upgraded, 176 newly installed, 0 to remove and 0 not upgraded. 614s Need to get 205 MB/205 MB of archives. 614s After this operation, 632 MB of additional disk space will be used. 614s Get:1 /tmp/autopkgtest.bs5KqV/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [708 B] 615s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14.1.0-5ubuntu1 [125 kB] 615s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libfftw3-double3 armhf 3.3.10-1ubuntu3 [369 kB] 615s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libfreetype6 armhf 2.13.2+dfsg-1build3 [331 kB] 615s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 616s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 616s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 616s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 616s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 616s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf libaom3 armhf 3.9.1-1 [1712 kB] 616s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf libheif-plugin-aomdec armhf 1.17.6-4build1 [9930 B] 616s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf libde265-0 armhf 1.0.15-1build3 [158 kB] 616s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf libheif-plugin-libde265 armhf 1.17.6-4build1 [10.5 kB] 616s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf libheif1 armhf 1.17.6-4build1 [266 kB] 616s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 616s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 616s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 616s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf liblcms2-2 armhf 2.14-2build1 [132 kB] 616s Get:19 http://ftpmaster.internal/ubuntu oracular/universe armhf liblqr-1-0 armhf 0.4.2-2.1build2 [23.2 kB] 616s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf libltdl7 armhf 2.4.7-7build1 [37.6 kB] 616s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf libopenjp2-7 armhf 2.5.0-2build3 [160 kB] 616s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf libraw23t64 armhf 0.21.2-2.1build1 [352 kB] 616s Get:23 http://ftpmaster.internal/ubuntu oracular/main armhf libdeflate0 armhf 1.20-1 [38.3 kB] 616s Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 616s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 616s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu3 [178 kB] 616s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 616s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 616s Get:29 http://ftpmaster.internal/ubuntu oracular/universe armhf imagemagick-6-common all 8:6.9.13.12+dfsg1-1 [69.5 kB] 616s Get:30 http://ftpmaster.internal/ubuntu oracular/universe armhf libmagickcore-6.q16-7t64 armhf 8:6.9.13.12+dfsg1-1 [1732 kB] 616s Get:31 http://ftpmaster.internal/ubuntu oracular/universe armhf libmagickwand-6.q16-7t64 armhf 8:6.9.13.12+dfsg1-1 [338 kB] 616s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [7888 B] 616s Get:33 http://ftpmaster.internal/ubuntu oracular/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.12+dfsg-1 [135 kB] 616s Get:34 http://ftpmaster.internal/ubuntu oracular/main armhf gtk-update-icon-cache armhf 3.24.43-1ubuntu1 [51.2 kB] 616s Get:35 http://ftpmaster.internal/ubuntu oracular/main armhf hicolor-icon-theme all 0.18-1 [13.5 kB] 616s Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf humanity-icon-theme all 0.6.16 [1282 kB] 616s Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf ubuntu-mono all 24.04-0ubuntu1 [151 kB] 616s Get:38 http://ftpmaster.internal/ubuntu oracular/main armhf adwaita-icon-theme all 46.0-1 [723 kB] 616s Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf at-spi2-common all 2.52.0-1build1 [8674 B] 616s Get:40 http://ftpmaster.internal/ubuntu oracular/main armhf libio-string-perl all 1.08-4 [11.1 kB] 616s Get:41 http://ftpmaster.internal/ubuntu oracular/universe armhf libdata-stag-perl all 0.14-3 [372 kB] 616s Get:42 http://ftpmaster.internal/ubuntu oracular/universe armhf libbio-perl-perl all 1.7.8-1 [2580 kB] 619s Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf libclass-data-inheritable-perl all 0.08-3 [8084 B] 619s Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 619s Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf libexception-class-perl all 1.45-1 [28.6 kB] 619s Get:46 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-deep-perl all 1.204-1 [47.1 kB] 619s Get:47 http://ftpmaster.internal/ubuntu oracular/main armhf libcapture-tiny-perl all 0.48-2 [20.2 kB] 619s Get:48 http://ftpmaster.internal/ubuntu oracular/main armhf libalgorithm-diff-perl all 1.201-1 [41.8 kB] 619s Get:49 http://ftpmaster.internal/ubuntu oracular/universe armhf libtext-diff-perl all 1.45-2 [25.6 kB] 619s Get:50 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-differences-perl all 0.71-1 [15.8 kB] 619s Get:51 http://ftpmaster.internal/ubuntu oracular/universe armhf libsub-uplevel-perl all 0.2800-3 [11.6 kB] 621s Get:52 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-exception-perl all 0.43-3 [13.4 kB] 622s Get:53 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-warn-perl all 0.37-2 [12.6 kB] 622s Get:54 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-most-perl all 0.38-1 [21.5 kB] 622s Get:55 http://ftpmaster.internal/ubuntu oracular/universe armhf bioperl all 1.7.8-1 [216 kB] 622s Get:56 http://ftpmaster.internal/ubuntu oracular/main armhf ca-certificates-java all 20240118 [11.6 kB] 622s Get:57 http://ftpmaster.internal/ubuntu oracular/main armhf unzip armhf 6.0-28ubuntu5 [167 kB] 622s Get:58 http://ftpmaster.internal/ubuntu oracular/universe armhf java-wrappers all 0.4 [8662 B] 622s Get:59 http://ftpmaster.internal/ubuntu oracular/universe armhf libjaxp1.3-java all 1.3.05-6 [227 kB] 622s Get:60 http://ftpmaster.internal/ubuntu oracular/universe armhf libxml-commons-external-java all 1.4.01-6 [240 kB] 622s Get:61 http://ftpmaster.internal/ubuntu oracular/universe armhf libapache-pom-java all 29-2 [5284 B] 622s Get:62 http://ftpmaster.internal/ubuntu oracular/universe armhf libcommons-parent-java all 56-1 [10.7 kB] 622s Get:63 http://ftpmaster.internal/ubuntu oracular/universe armhf libcommons-io-java all 2.16.1-1 [451 kB] 622s Get:64 http://ftpmaster.internal/ubuntu oracular/universe armhf libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 622s Get:65 http://ftpmaster.internal/ubuntu oracular/universe armhf libxmlgraphics-commons-java all 2.8-2 [619 kB] 622s Get:66 http://ftpmaster.internal/ubuntu oracular/universe armhf libbatik-java all 1.17+dfsg-1 [3877 kB] 622s Get:67 http://ftpmaster.internal/ubuntu oracular/universe armhf libcommons-lang-java all 2.6-10 [270 kB] 622s Get:68 http://ftpmaster.internal/ubuntu oracular/universe armhf libjargs-java all 1.0.0-5 [13.9 kB] 622s Get:69 http://ftpmaster.internal/ubuntu oracular/universe armhf libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] 622s Get:70 http://ftpmaster.internal/ubuntu oracular/universe armhf libxerces2-java all 2.12.2-1 [1430 kB] 622s Get:71 http://ftpmaster.internal/ubuntu oracular/main armhf java-common all 0.75+exp1 [6798 B] 622s Get:72 http://ftpmaster.internal/ubuntu oracular/main armhf libpcsclite1 armhf 2.2.3-1 [24.6 kB] 622s Get:73 http://ftpmaster.internal/ubuntu oracular/main armhf openjdk-21-jre-headless armhf 21.0.4+7-1ubuntu2 [39.7 MB] 624s Get:74 http://ftpmaster.internal/ubuntu oracular/main armhf default-jre-headless armhf 2:1.21-75+exp1 [3094 B] 624s Get:75 http://ftpmaster.internal/ubuntu oracular/main armhf libatk1.0-0t64 armhf 2.52.0-1build1 [48.0 kB] 624s Get:76 http://ftpmaster.internal/ubuntu oracular/main armhf libxi6 armhf 2:1.8.1-1build1 [26.6 kB] 624s Get:77 http://ftpmaster.internal/ubuntu oracular/main armhf libatspi2.0-0t64 armhf 2.52.0-1build1 [70.7 kB] 624s Get:78 http://ftpmaster.internal/ubuntu oracular/main armhf libatk-bridge2.0-0t64 armhf 2.52.0-1build1 [59.1 kB] 624s Get:79 http://ftpmaster.internal/ubuntu oracular/main armhf libpixman-1-0 armhf 0.42.2-1build1 [193 kB] 624s Get:80 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 624s Get:81 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 624s Get:82 http://ftpmaster.internal/ubuntu oracular/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 625s Get:83 http://ftpmaster.internal/ubuntu oracular/main armhf libcairo2 armhf 1.18.0-3build1 [482 kB] 625s Get:84 http://ftpmaster.internal/ubuntu oracular/main armhf libcairo-gobject2 armhf 1.18.0-3build1 [125 kB] 625s Get:85 http://ftpmaster.internal/ubuntu oracular/main armhf libcolord2 armhf 1.4.7-1build2 [133 kB] 625s Get:86 http://ftpmaster.internal/ubuntu oracular/main armhf libavahi-common-data armhf 0.8-13ubuntu6 [29.7 kB] 625s Get:87 http://ftpmaster.internal/ubuntu oracular/main armhf libavahi-common3 armhf 0.8-13ubuntu6 [20.2 kB] 625s Get:88 http://ftpmaster.internal/ubuntu oracular/main armhf libavahi-client3 armhf 0.8-13ubuntu6 [24.2 kB] 625s Get:89 http://ftpmaster.internal/ubuntu oracular/main armhf libcups2t64 armhf 2.4.7-1.2ubuntu9 [236 kB] 625s Get:90 http://ftpmaster.internal/ubuntu oracular/main armhf libepoxy0 armhf 1.5.10-1build1 [194 kB] 625s Get:91 http://ftpmaster.internal/ubuntu oracular/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 625s Get:92 http://ftpmaster.internal/ubuntu oracular/main armhf libharfbuzz0b armhf 8.3.0-2build2 [446 kB] 625s Get:93 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB] 625s Get:94 http://ftpmaster.internal/ubuntu oracular/main armhf libthai-data all 0.1.29-2build1 [158 kB] 625s Get:95 http://ftpmaster.internal/ubuntu oracular/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB] 625s Get:96 http://ftpmaster.internal/ubuntu oracular/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 625s Get:97 http://ftpmaster.internal/ubuntu oracular/main armhf libpango-1.0-0 armhf 1.54.0+ds-1 [209 kB] 625s Get:98 http://ftpmaster.internal/ubuntu oracular/main armhf libpangoft2-1.0-0 armhf 1.54.0+ds-1 [36.4 kB] 625s Get:99 http://ftpmaster.internal/ubuntu oracular/main armhf libpangocairo-1.0-0 armhf 1.54.0+ds-1 [24.8 kB] 625s Get:100 http://ftpmaster.internal/ubuntu oracular/main armhf libwayland-client0 armhf 1.22.0-2.1build1 [22.0 kB] 625s Get:101 http://ftpmaster.internal/ubuntu oracular/main armhf libwayland-cursor0 armhf 1.22.0-2.1build1 [9368 B] 625s Get:102 http://ftpmaster.internal/ubuntu oracular/main armhf libwayland-egl1 armhf 1.22.0-2.1build1 [5322 B] 625s Get:103 http://ftpmaster.internal/ubuntu oracular/main armhf libxcomposite1 armhf 1:0.4.5-1build3 [5750 B] 626s Get:104 http://ftpmaster.internal/ubuntu oracular/main armhf libxfixes3 armhf 1:6.0.0-2build1 [9038 B] 626s Get:105 http://ftpmaster.internal/ubuntu oracular/main armhf libxcursor1 armhf 1:1.2.2-1 [17.6 kB] 626s Get:106 http://ftpmaster.internal/ubuntu oracular/main armhf libxdamage1 armhf 1:1.1.6-1build1 [5462 B] 626s Get:107 http://ftpmaster.internal/ubuntu oracular/main armhf libxinerama1 armhf 2:1.1.4-3build1 [5866 B] 626s Get:108 http://ftpmaster.internal/ubuntu oracular/main armhf libxrandr2 armhf 2:1.5.4-1 [15.8 kB] 626s Get:109 http://ftpmaster.internal/ubuntu oracular/main armhf libdconf1 armhf 0.40.0-4build2 [38.4 kB] 626s Get:110 http://ftpmaster.internal/ubuntu oracular/main armhf dconf-service armhf 0.40.0-4build2 [27.4 kB] 626s Get:111 http://ftpmaster.internal/ubuntu oracular/main armhf dconf-gsettings-backend armhf 0.40.0-4build2 [23.6 kB] 626s Get:112 http://ftpmaster.internal/ubuntu oracular/main armhf libgtk-3-common all 3.24.43-1ubuntu1 [1201 kB] 626s Get:113 http://ftpmaster.internal/ubuntu oracular/main armhf libgtk-3-0t64 armhf 3.24.43-1ubuntu1 [2590 kB] 626s Get:114 http://ftpmaster.internal/ubuntu oracular/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 626s Get:115 http://ftpmaster.internal/ubuntu oracular/main armhf libglapi-mesa armhf 24.0.9-0ubuntu2 [47.7 kB] 626s Get:116 http://ftpmaster.internal/ubuntu oracular/main armhf libx11-xcb1 armhf 2:1.8.7-1build1 [7748 B] 626s Get:117 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-dri2-0 armhf 1.17.0-2 [6868 B] 626s Get:118 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 626s Get:119 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 626s Get:120 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 626s Get:121 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 626s Get:122 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 626s Get:123 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 626s Get:124 http://ftpmaster.internal/ubuntu oracular/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B] 626s Get:125 http://ftpmaster.internal/ubuntu oracular/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 626s Get:126 http://ftpmaster.internal/ubuntu oracular/main armhf libvulkan1 armhf 1.3.283.0-1 [123 kB] 626s Get:127 http://ftpmaster.internal/ubuntu oracular/main armhf libdrm-amdgpu1 armhf 2.4.121-2 [18.8 kB] 626s Get:128 http://ftpmaster.internal/ubuntu oracular/main armhf libdrm-nouveau2 armhf 2.4.121-2 [15.2 kB] 626s Get:129 http://ftpmaster.internal/ubuntu oracular/main armhf libdrm-radeon1 armhf 2.4.121-2 [18.2 kB] 626s Get:130 http://ftpmaster.internal/ubuntu oracular/main armhf libllvm17t64 armhf 1:17.0.6-12 [25.3 MB] 627s Get:131 http://ftpmaster.internal/ubuntu oracular/main armhf libgl1-mesa-dri armhf 24.0.9-0ubuntu2 [7200 kB] 627s Get:132 http://ftpmaster.internal/ubuntu oracular/main armhf libglx-mesa0 armhf 24.0.9-0ubuntu2 [131 kB] 627s Get:133 http://ftpmaster.internal/ubuntu oracular/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 627s Get:134 http://ftpmaster.internal/ubuntu oracular/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 627s Get:135 http://ftpmaster.internal/ubuntu oracular/main armhf libasound2-data all 1.2.12-1 [21.0 kB] 627s Get:136 http://ftpmaster.internal/ubuntu oracular/main armhf libasound2t64 armhf 1.2.12-1 [344 kB] 627s Get:137 http://ftpmaster.internal/ubuntu oracular/main armhf libgif7 armhf 5.2.2-1ubuntu1 [32.6 kB] 627s Get:138 http://ftpmaster.internal/ubuntu oracular/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 627s Get:139 http://ftpmaster.internal/ubuntu oracular/main armhf libxtst6 armhf 2:1.2.3-1.1build1 [10.7 kB] 627s Get:140 http://ftpmaster.internal/ubuntu oracular/main armhf openjdk-21-jre armhf 21.0.4+7-1ubuntu2 [196 kB] 627s Get:141 http://ftpmaster.internal/ubuntu oracular/main armhf default-jre armhf 2:1.21-75+exp1 [922 B] 627s Get:142 http://ftpmaster.internal/ubuntu oracular/universe armhf cgview all 0.0.20100111-7 [2220 kB] 627s Get:143 http://ftpmaster.internal/ubuntu oracular/universe armhf ncbi-data all 6.1.20170106+dfsg2-3 [3966 kB] 627s Get:144 http://ftpmaster.internal/ubuntu oracular/universe armhf libmbedcrypto7t64 armhf 2.28.8-1 [182 kB] 627s Get:145 http://ftpmaster.internal/ubuntu oracular/universe armhf libmbedx509-1t64 armhf 2.28.8-1 [43.0 kB] 627s Get:146 http://ftpmaster.internal/ubuntu oracular/universe armhf libmbedtls14t64 armhf 2.28.8-1 [77.2 kB] 627s Get:147 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf ncbi-blast+ armhf 2.16.0+ds-3 [14.8 MB] 628s Get:148 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf ncbi-blast+-legacy all 2.16.0+ds-3 [4992 B] 628s Get:149 http://ftpmaster.internal/ubuntu oracular/universe armhf imagemagick-6.q16 armhf 8:6.9.13.12+dfsg1-1 [254 kB] 628s Get:150 http://ftpmaster.internal/ubuntu oracular/universe armhf imagemagick armhf 8:6.9.13.12+dfsg1-1 [14.2 kB] 628s Get:151 http://ftpmaster.internal/ubuntu oracular/main armhf liberror-perl all 0.17029-2 [25.6 kB] 628s Get:152 http://ftpmaster.internal/ubuntu oracular/main armhf libtie-ixhash-perl all 1.23-4 [11.3 kB] 628s Get:153 http://ftpmaster.internal/ubuntu oracular/main armhf libencode-locale-perl all 1.05-3 [11.6 kB] 628s Get:154 http://ftpmaster.internal/ubuntu oracular/main armhf libtimedate-perl all 2.3300-2 [34.0 kB] 628s Get:155 http://ftpmaster.internal/ubuntu oracular/main armhf libhttp-date-perl all 6.06-1 [10.2 kB] 628s Get:156 http://ftpmaster.internal/ubuntu oracular/main armhf libfile-listing-perl all 6.16-1 [11.3 kB] 628s Get:157 http://ftpmaster.internal/ubuntu oracular/main armhf libhtml-tagset-perl all 3.24-1 [14.1 kB] 628s Get:158 http://ftpmaster.internal/ubuntu oracular/main armhf liburi-perl all 5.28-1 [88.1 kB] 628s Get:159 http://ftpmaster.internal/ubuntu oracular/main armhf libhtml-parser-perl armhf 3.82-1 [82.4 kB] 628s Get:160 http://ftpmaster.internal/ubuntu oracular/main armhf libhtml-tree-perl all 5.07-3 [200 kB] 628s Get:161 http://ftpmaster.internal/ubuntu oracular/main armhf libclone-perl armhf 0.46-1build3 [10.0 kB] 628s Get:162 http://ftpmaster.internal/ubuntu oracular/main armhf libio-html-perl all 1.004-3 [15.9 kB] 628s Get:163 http://ftpmaster.internal/ubuntu oracular/main armhf liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 628s Get:164 http://ftpmaster.internal/ubuntu oracular/main armhf libhttp-message-perl all 6.46-1ubuntu1 [75.9 kB] 628s Get:165 http://ftpmaster.internal/ubuntu oracular/main armhf libhttp-cookies-perl all 6.11-1 [18.2 kB] 628s Get:166 http://ftpmaster.internal/ubuntu oracular/main armhf libhttp-negotiate-perl all 6.01-2 [12.4 kB] 628s Get:167 http://ftpmaster.internal/ubuntu oracular/main armhf perl-openssl-defaults armhf 7build3 [6628 B] 628s Get:168 http://ftpmaster.internal/ubuntu oracular/main armhf libnet-ssleay-perl armhf 1.94-1build4 [298 kB] 628s Get:169 http://ftpmaster.internal/ubuntu oracular/main armhf libio-socket-ssl-perl all 2.088-1 [200 kB] 628s Get:170 http://ftpmaster.internal/ubuntu oracular/main armhf libnet-http-perl all 6.23-1 [22.3 kB] 628s Get:171 http://ftpmaster.internal/ubuntu oracular/main armhf liblwp-protocol-https-perl all 6.14-1 [9040 B] 628s Get:172 http://ftpmaster.internal/ubuntu oracular/main armhf libtry-tiny-perl all 0.31-2 [20.8 kB] 628s Get:173 http://ftpmaster.internal/ubuntu oracular/main armhf libwww-robotrules-perl all 6.02-1 [12.6 kB] 628s Get:174 http://ftpmaster.internal/ubuntu oracular/main armhf libwww-perl all 6.77-1 [138 kB] 628s Get:175 http://ftpmaster.internal/ubuntu oracular/universe armhf cct all 1:1.0.3-1 [36.3 MB] 629s Get:176 http://ftpmaster.internal/ubuntu oracular/universe armhf cct-examples all 1:1.0.3-1 [43.6 MB] 635s Fetched 205 MB in 18s (11.5 MB/s) 635s Selecting previously unselected package libgomp1:armhf. 635s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58426 files and directories currently installed.) 635s Preparing to unpack .../000-libgomp1_14.1.0-5ubuntu1_armhf.deb ... 635s Unpacking libgomp1:armhf (14.1.0-5ubuntu1) ... 635s Selecting previously unselected package libfftw3-double3:armhf. 635s Preparing to unpack .../001-libfftw3-double3_3.3.10-1ubuntu3_armhf.deb ... 635s Unpacking libfftw3-double3:armhf (3.3.10-1ubuntu3) ... 635s Selecting previously unselected package libfreetype6:armhf. 636s Preparing to unpack .../002-libfreetype6_2.13.2+dfsg-1build3_armhf.deb ... 636s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build3) ... 636s Selecting previously unselected package fonts-dejavu-mono. 636s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ... 636s Unpacking fonts-dejavu-mono (2.37-8) ... 636s Selecting previously unselected package fonts-dejavu-core. 636s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ... 636s Unpacking fonts-dejavu-core (2.37-8) ... 636s Selecting previously unselected package fontconfig-config. 636s Preparing to unpack .../005-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 636s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 636s Selecting previously unselected package libfontconfig1:armhf. 636s Preparing to unpack .../006-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 636s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 636s Selecting previously unselected package libsharpyuv0:armhf. 636s Preparing to unpack .../007-libsharpyuv0_1.4.0-0.1_armhf.deb ... 636s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 636s Selecting previously unselected package libaom3:armhf. 637s Preparing to unpack .../008-libaom3_3.9.1-1_armhf.deb ... 637s Unpacking libaom3:armhf (3.9.1-1) ... 637s Selecting previously unselected package libheif-plugin-aomdec:armhf. 637s Preparing to unpack .../009-libheif-plugin-aomdec_1.17.6-4build1_armhf.deb ... 637s Unpacking libheif-plugin-aomdec:armhf (1.17.6-4build1) ... 637s Selecting previously unselected package libde265-0:armhf. 637s Preparing to unpack .../010-libde265-0_1.0.15-1build3_armhf.deb ... 637s Unpacking libde265-0:armhf (1.0.15-1build3) ... 637s Selecting previously unselected package libheif-plugin-libde265:armhf. 637s Preparing to unpack .../011-libheif-plugin-libde265_1.17.6-4build1_armhf.deb ... 637s Unpacking libheif-plugin-libde265:armhf (1.17.6-4build1) ... 637s Selecting previously unselected package libheif1:armhf. 637s Preparing to unpack .../012-libheif1_1.17.6-4build1_armhf.deb ... 637s Unpacking libheif1:armhf (1.17.6-4build1) ... 637s Selecting previously unselected package libjbig0:armhf. 637s Preparing to unpack .../013-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 637s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 637s Selecting previously unselected package libjpeg-turbo8:armhf. 637s Preparing to unpack .../014-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 637s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 637s Selecting previously unselected package libjpeg8:armhf. 637s Preparing to unpack .../015-libjpeg8_8c-2ubuntu11_armhf.deb ... 637s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 637s Selecting previously unselected package liblcms2-2:armhf. 637s Preparing to unpack .../016-liblcms2-2_2.14-2build1_armhf.deb ... 637s Unpacking liblcms2-2:armhf (2.14-2build1) ... 637s Selecting previously unselected package liblqr-1-0:armhf. 637s Preparing to unpack .../017-liblqr-1-0_0.4.2-2.1build2_armhf.deb ... 637s Unpacking liblqr-1-0:armhf (0.4.2-2.1build2) ... 637s Selecting previously unselected package libltdl7:armhf. 637s Preparing to unpack .../018-libltdl7_2.4.7-7build1_armhf.deb ... 637s Unpacking libltdl7:armhf (2.4.7-7build1) ... 638s Selecting previously unselected package libopenjp2-7:armhf. 638s Preparing to unpack .../019-libopenjp2-7_2.5.0-2build3_armhf.deb ... 638s Unpacking libopenjp2-7:armhf (2.5.0-2build3) ... 638s Selecting previously unselected package libraw23t64:armhf. 638s Preparing to unpack .../020-libraw23t64_0.21.2-2.1build1_armhf.deb ... 638s Unpacking libraw23t64:armhf (0.21.2-2.1build1) ... 638s Selecting previously unselected package libdeflate0:armhf. 638s Preparing to unpack .../021-libdeflate0_1.20-1_armhf.deb ... 638s Unpacking libdeflate0:armhf (1.20-1) ... 638s Selecting previously unselected package liblerc4:armhf. 638s Preparing to unpack .../022-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 638s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 638s Selecting previously unselected package libwebp7:armhf. 638s Preparing to unpack .../023-libwebp7_1.4.0-0.1_armhf.deb ... 638s Unpacking libwebp7:armhf (1.4.0-0.1) ... 638s Selecting previously unselected package libtiff6:armhf. 638s Preparing to unpack .../024-libtiff6_4.5.1+git230720-4ubuntu3_armhf.deb ... 638s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu3) ... 638s Selecting previously unselected package libwebpdemux2:armhf. 639s Preparing to unpack .../025-libwebpdemux2_1.4.0-0.1_armhf.deb ... 639s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 639s Selecting previously unselected package libwebpmux3:armhf. 639s Preparing to unpack .../026-libwebpmux3_1.4.0-0.1_armhf.deb ... 639s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 639s Selecting previously unselected package imagemagick-6-common. 639s Preparing to unpack .../027-imagemagick-6-common_8%3a6.9.13.12+dfsg1-1_all.deb ... 639s Unpacking imagemagick-6-common (8:6.9.13.12+dfsg1-1) ... 639s Selecting previously unselected package libmagickcore-6.q16-7t64:armhf. 639s Preparing to unpack .../028-libmagickcore-6.q16-7t64_8%3a6.9.13.12+dfsg1-1_armhf.deb ... 639s Unpacking libmagickcore-6.q16-7t64:armhf (8:6.9.13.12+dfsg1-1) ... 639s Selecting previously unselected package libmagickwand-6.q16-7t64:armhf. 639s Preparing to unpack .../029-libmagickwand-6.q16-7t64_8%3a6.9.13.12+dfsg1-1_armhf.deb ... 639s Unpacking libmagickwand-6.q16-7t64:armhf (8:6.9.13.12+dfsg1-1) ... 639s Selecting previously unselected package libgdk-pixbuf2.0-common. 640s Preparing to unpack .../030-libgdk-pixbuf2.0-common_2.42.12+dfsg-1_all.deb ... 640s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 640s Selecting previously unselected package libgdk-pixbuf-2.0-0:armhf. 640s Preparing to unpack .../031-libgdk-pixbuf-2.0-0_2.42.12+dfsg-1_armhf.deb ... 640s Unpacking libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-1) ... 640s Selecting previously unselected package gtk-update-icon-cache. 640s Preparing to unpack .../032-gtk-update-icon-cache_3.24.43-1ubuntu1_armhf.deb ... 640s Unpacking gtk-update-icon-cache (3.24.43-1ubuntu1) ... 640s Selecting previously unselected package hicolor-icon-theme. 640s Preparing to unpack .../033-hicolor-icon-theme_0.18-1_all.deb ... 640s Unpacking hicolor-icon-theme (0.18-1) ... 640s Selecting previously unselected package humanity-icon-theme. 640s Preparing to unpack .../034-humanity-icon-theme_0.6.16_all.deb ... 640s Unpacking humanity-icon-theme (0.6.16) ... 642s Selecting previously unselected package ubuntu-mono. 642s Preparing to unpack .../035-ubuntu-mono_24.04-0ubuntu1_all.deb ... 642s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 643s Selecting previously unselected package adwaita-icon-theme. 643s Preparing to unpack .../036-adwaita-icon-theme_46.0-1_all.deb ... 643s Unpacking adwaita-icon-theme (46.0-1) ... 643s Selecting previously unselected package at-spi2-common. 644s Preparing to unpack .../037-at-spi2-common_2.52.0-1build1_all.deb ... 644s Unpacking at-spi2-common (2.52.0-1build1) ... 644s Selecting previously unselected package libio-string-perl. 644s Preparing to unpack .../038-libio-string-perl_1.08-4_all.deb ... 644s Unpacking libio-string-perl (1.08-4) ... 644s Selecting previously unselected package libdata-stag-perl. 644s Preparing to unpack .../039-libdata-stag-perl_0.14-3_all.deb ... 644s Unpacking libdata-stag-perl (0.14-3) ... 644s Selecting previously unselected package libbio-perl-perl. 644s Preparing to unpack .../040-libbio-perl-perl_1.7.8-1_all.deb ... 644s Unpacking libbio-perl-perl (1.7.8-1) ... 645s Selecting previously unselected package libclass-data-inheritable-perl. 645s Preparing to unpack .../041-libclass-data-inheritable-perl_0.08-3_all.deb ... 645s Unpacking libclass-data-inheritable-perl (0.08-3) ... 645s Selecting previously unselected package libdevel-stacktrace-perl. 645s Preparing to unpack .../042-libdevel-stacktrace-perl_2.0500-1_all.deb ... 645s Unpacking libdevel-stacktrace-perl (2.0500-1) ... 645s Selecting previously unselected package libexception-class-perl. 645s Preparing to unpack .../043-libexception-class-perl_1.45-1_all.deb ... 645s Unpacking libexception-class-perl (1.45-1) ... 645s Selecting previously unselected package libtest-deep-perl. 645s Preparing to unpack .../044-libtest-deep-perl_1.204-1_all.deb ... 645s Unpacking libtest-deep-perl (1.204-1) ... 645s Selecting previously unselected package libcapture-tiny-perl. 645s Preparing to unpack .../045-libcapture-tiny-perl_0.48-2_all.deb ... 645s Unpacking libcapture-tiny-perl (0.48-2) ... 645s Selecting previously unselected package libalgorithm-diff-perl. 645s Preparing to unpack .../046-libalgorithm-diff-perl_1.201-1_all.deb ... 645s Unpacking libalgorithm-diff-perl (1.201-1) ... 645s Selecting previously unselected package libtext-diff-perl. 645s Preparing to unpack .../047-libtext-diff-perl_1.45-2_all.deb ... 645s Unpacking libtext-diff-perl (1.45-2) ... 646s Selecting previously unselected package libtest-differences-perl. 646s Preparing to unpack .../048-libtest-differences-perl_0.71-1_all.deb ... 646s Unpacking libtest-differences-perl (0.71-1) ... 646s Selecting previously unselected package libsub-uplevel-perl. 646s Preparing to unpack .../049-libsub-uplevel-perl_0.2800-3_all.deb ... 646s Unpacking libsub-uplevel-perl (0.2800-3) ... 646s Selecting previously unselected package libtest-exception-perl. 646s Preparing to unpack .../050-libtest-exception-perl_0.43-3_all.deb ... 646s Unpacking libtest-exception-perl (0.43-3) ... 646s Selecting previously unselected package libtest-warn-perl. 646s Preparing to unpack .../051-libtest-warn-perl_0.37-2_all.deb ... 646s Unpacking libtest-warn-perl (0.37-2) ... 646s Selecting previously unselected package libtest-most-perl. 646s Preparing to unpack .../052-libtest-most-perl_0.38-1_all.deb ... 646s Unpacking libtest-most-perl (0.38-1) ... 646s Selecting previously unselected package bioperl. 646s Preparing to unpack .../053-bioperl_1.7.8-1_all.deb ... 646s Unpacking bioperl (1.7.8-1) ... 646s Selecting previously unselected package ca-certificates-java. 646s Preparing to unpack .../054-ca-certificates-java_20240118_all.deb ... 646s Unpacking ca-certificates-java (20240118) ... 646s Selecting previously unselected package unzip. 647s Preparing to unpack .../055-unzip_6.0-28ubuntu5_armhf.deb ... 647s Unpacking unzip (6.0-28ubuntu5) ... 647s Selecting previously unselected package java-wrappers. 647s Preparing to unpack .../056-java-wrappers_0.4_all.deb ... 647s Unpacking java-wrappers (0.4) ... 647s Selecting previously unselected package libjaxp1.3-java. 647s Preparing to unpack .../057-libjaxp1.3-java_1.3.05-6_all.deb ... 647s Unpacking libjaxp1.3-java (1.3.05-6) ... 648s Selecting previously unselected package libxml-commons-external-java. 648s Preparing to unpack .../058-libxml-commons-external-java_1.4.01-6_all.deb ... 648s Unpacking libxml-commons-external-java (1.4.01-6) ... 648s Selecting previously unselected package libapache-pom-java. 648s Preparing to unpack .../059-libapache-pom-java_29-2_all.deb ... 648s Unpacking libapache-pom-java (29-2) ... 648s Selecting previously unselected package libcommons-parent-java. 648s Preparing to unpack .../060-libcommons-parent-java_56-1_all.deb ... 648s Unpacking libcommons-parent-java (56-1) ... 648s Selecting previously unselected package libcommons-io-java. 648s Preparing to unpack .../061-libcommons-io-java_2.16.1-1_all.deb ... 648s Unpacking libcommons-io-java (2.16.1-1) ... 648s Selecting previously unselected package libcommons-logging-java. 648s Preparing to unpack .../062-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 648s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 648s Selecting previously unselected package libxmlgraphics-commons-java. 648s Preparing to unpack .../063-libxmlgraphics-commons-java_2.8-2_all.deb ... 648s Unpacking libxmlgraphics-commons-java (2.8-2) ... 648s Selecting previously unselected package libbatik-java. 648s Preparing to unpack .../064-libbatik-java_1.17+dfsg-1_all.deb ... 648s Unpacking libbatik-java (1.17+dfsg-1) ... 649s Selecting previously unselected package libcommons-lang-java. 649s Preparing to unpack .../065-libcommons-lang-java_2.6-10_all.deb ... 649s Unpacking libcommons-lang-java (2.6-10) ... 649s Selecting previously unselected package libjargs-java. 649s Preparing to unpack .../066-libjargs-java_1.0.0-5_all.deb ... 649s Unpacking libjargs-java (1.0.0-5) ... 649s Selecting previously unselected package libxml-commons-resolver1.1-java. 649s Preparing to unpack .../067-libxml-commons-resolver1.1-java_1.2-11_all.deb ... 649s Unpacking libxml-commons-resolver1.1-java (1.2-11) ... 649s Selecting previously unselected package libxerces2-java. 649s Preparing to unpack .../068-libxerces2-java_2.12.2-1_all.deb ... 649s Unpacking libxerces2-java (2.12.2-1) ... 649s Selecting previously unselected package java-common. 649s Preparing to unpack .../069-java-common_0.75+exp1_all.deb ... 649s Unpacking java-common (0.75+exp1) ... 649s Selecting previously unselected package libpcsclite1:armhf. 649s Preparing to unpack .../070-libpcsclite1_2.2.3-1_armhf.deb ... 649s Unpacking libpcsclite1:armhf (2.2.3-1) ... 649s Selecting previously unselected package openjdk-21-jre-headless:armhf. 649s Preparing to unpack .../071-openjdk-21-jre-headless_21.0.4+7-1ubuntu2_armhf.deb ... 649s Unpacking openjdk-21-jre-headless:armhf (21.0.4+7-1ubuntu2) ... 650s Selecting previously unselected package default-jre-headless. 650s Preparing to unpack .../072-default-jre-headless_2%3a1.21-75+exp1_armhf.deb ... 650s Unpacking default-jre-headless (2:1.21-75+exp1) ... 650s Selecting previously unselected package libatk1.0-0t64:armhf. 651s Preparing to unpack .../073-libatk1.0-0t64_2.52.0-1build1_armhf.deb ... 651s Unpacking libatk1.0-0t64:armhf (2.52.0-1build1) ... 651s Selecting previously unselected package libxi6:armhf. 651s Preparing to unpack .../074-libxi6_2%3a1.8.1-1build1_armhf.deb ... 651s Unpacking libxi6:armhf (2:1.8.1-1build1) ... 651s Selecting previously unselected package libatspi2.0-0t64:armhf. 651s Preparing to unpack .../075-libatspi2.0-0t64_2.52.0-1build1_armhf.deb ... 651s Unpacking libatspi2.0-0t64:armhf (2.52.0-1build1) ... 651s Selecting previously unselected package libatk-bridge2.0-0t64:armhf. 651s Preparing to unpack .../076-libatk-bridge2.0-0t64_2.52.0-1build1_armhf.deb ... 651s Unpacking libatk-bridge2.0-0t64:armhf (2.52.0-1build1) ... 651s Selecting previously unselected package libpixman-1-0:armhf. 651s Preparing to unpack .../077-libpixman-1-0_0.42.2-1build1_armhf.deb ... 651s Unpacking libpixman-1-0:armhf (0.42.2-1build1) ... 651s Selecting previously unselected package libxcb-render0:armhf. 651s Preparing to unpack .../078-libxcb-render0_1.17.0-2_armhf.deb ... 651s Unpacking libxcb-render0:armhf (1.17.0-2) ... 651s Selecting previously unselected package libxcb-shm0:armhf. 651s Preparing to unpack .../079-libxcb-shm0_1.17.0-2_armhf.deb ... 651s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 651s Selecting previously unselected package libxrender1:armhf. 651s Preparing to unpack .../080-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 651s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 651s Selecting previously unselected package libcairo2:armhf. 651s Preparing to unpack .../081-libcairo2_1.18.0-3build1_armhf.deb ... 651s Unpacking libcairo2:armhf (1.18.0-3build1) ... 651s Selecting previously unselected package libcairo-gobject2:armhf. 651s Preparing to unpack .../082-libcairo-gobject2_1.18.0-3build1_armhf.deb ... 651s Unpacking libcairo-gobject2:armhf (1.18.0-3build1) ... 651s Selecting previously unselected package libcolord2:armhf. 651s Preparing to unpack .../083-libcolord2_1.4.7-1build2_armhf.deb ... 651s Unpacking libcolord2:armhf (1.4.7-1build2) ... 652s Selecting previously unselected package libavahi-common-data:armhf. 652s Preparing to unpack .../084-libavahi-common-data_0.8-13ubuntu6_armhf.deb ... 652s Unpacking libavahi-common-data:armhf (0.8-13ubuntu6) ... 652s Selecting previously unselected package libavahi-common3:armhf. 652s Preparing to unpack .../085-libavahi-common3_0.8-13ubuntu6_armhf.deb ... 652s Unpacking libavahi-common3:armhf (0.8-13ubuntu6) ... 652s Selecting previously unselected package libavahi-client3:armhf. 652s Preparing to unpack .../086-libavahi-client3_0.8-13ubuntu6_armhf.deb ... 652s Unpacking libavahi-client3:armhf (0.8-13ubuntu6) ... 652s Selecting previously unselected package libcups2t64:armhf. 652s Preparing to unpack .../087-libcups2t64_2.4.7-1.2ubuntu9_armhf.deb ... 652s Unpacking libcups2t64:armhf (2.4.7-1.2ubuntu9) ... 652s Selecting previously unselected package libepoxy0:armhf. 652s Preparing to unpack .../088-libepoxy0_1.5.10-1build1_armhf.deb ... 652s Unpacking libepoxy0:armhf (1.5.10-1build1) ... 652s Selecting previously unselected package libgraphite2-3:armhf. 652s Preparing to unpack .../089-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 652s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 652s Selecting previously unselected package libharfbuzz0b:armhf. 652s Preparing to unpack .../090-libharfbuzz0b_8.3.0-2build2_armhf.deb ... 652s Unpacking libharfbuzz0b:armhf (8.3.0-2build2) ... 652s Selecting previously unselected package fontconfig. 652s Preparing to unpack .../091-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ... 652s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 652s Selecting previously unselected package libthai-data. 652s Preparing to unpack .../092-libthai-data_0.1.29-2build1_all.deb ... 652s Unpacking libthai-data (0.1.29-2build1) ... 652s Selecting previously unselected package libdatrie1:armhf. 652s Preparing to unpack .../093-libdatrie1_0.2.13-3build1_armhf.deb ... 652s Unpacking libdatrie1:armhf (0.2.13-3build1) ... 652s Selecting previously unselected package libthai0:armhf. 652s Preparing to unpack .../094-libthai0_0.1.29-2build1_armhf.deb ... 652s Unpacking libthai0:armhf (0.1.29-2build1) ... 652s Selecting previously unselected package libpango-1.0-0:armhf. 652s Preparing to unpack .../095-libpango-1.0-0_1.54.0+ds-1_armhf.deb ... 652s Unpacking libpango-1.0-0:armhf (1.54.0+ds-1) ... 652s Selecting previously unselected package libpangoft2-1.0-0:armhf. 652s Preparing to unpack .../096-libpangoft2-1.0-0_1.54.0+ds-1_armhf.deb ... 652s Unpacking libpangoft2-1.0-0:armhf (1.54.0+ds-1) ... 652s Selecting previously unselected package libpangocairo-1.0-0:armhf. 652s Preparing to unpack .../097-libpangocairo-1.0-0_1.54.0+ds-1_armhf.deb ... 652s Unpacking libpangocairo-1.0-0:armhf (1.54.0+ds-1) ... 652s Selecting previously unselected package libwayland-client0:armhf. 652s Preparing to unpack .../098-libwayland-client0_1.22.0-2.1build1_armhf.deb ... 652s Unpacking libwayland-client0:armhf (1.22.0-2.1build1) ... 652s Selecting previously unselected package libwayland-cursor0:armhf. 652s Preparing to unpack .../099-libwayland-cursor0_1.22.0-2.1build1_armhf.deb ... 652s Unpacking libwayland-cursor0:armhf (1.22.0-2.1build1) ... 652s Selecting previously unselected package libwayland-egl1:armhf. 652s Preparing to unpack .../100-libwayland-egl1_1.22.0-2.1build1_armhf.deb ... 652s Unpacking libwayland-egl1:armhf (1.22.0-2.1build1) ... 653s Selecting previously unselected package libxcomposite1:armhf. 653s Preparing to unpack .../101-libxcomposite1_1%3a0.4.5-1build3_armhf.deb ... 653s Unpacking libxcomposite1:armhf (1:0.4.5-1build3) ... 653s Selecting previously unselected package libxfixes3:armhf. 653s Preparing to unpack .../102-libxfixes3_1%3a6.0.0-2build1_armhf.deb ... 653s Unpacking libxfixes3:armhf (1:6.0.0-2build1) ... 653s Selecting previously unselected package libxcursor1:armhf. 653s Preparing to unpack .../103-libxcursor1_1%3a1.2.2-1_armhf.deb ... 653s Unpacking libxcursor1:armhf (1:1.2.2-1) ... 653s Selecting previously unselected package libxdamage1:armhf. 653s Preparing to unpack .../104-libxdamage1_1%3a1.1.6-1build1_armhf.deb ... 653s Unpacking libxdamage1:armhf (1:1.1.6-1build1) ... 653s Selecting previously unselected package libxinerama1:armhf. 653s Preparing to unpack .../105-libxinerama1_2%3a1.1.4-3build1_armhf.deb ... 653s Unpacking libxinerama1:armhf (2:1.1.4-3build1) ... 653s Selecting previously unselected package libxrandr2:armhf. 653s Preparing to unpack .../106-libxrandr2_2%3a1.5.4-1_armhf.deb ... 653s Unpacking libxrandr2:armhf (2:1.5.4-1) ... 653s Selecting previously unselected package libdconf1:armhf. 653s Preparing to unpack .../107-libdconf1_0.40.0-4build2_armhf.deb ... 653s Unpacking libdconf1:armhf (0.40.0-4build2) ... 653s Selecting previously unselected package dconf-service. 653s Preparing to unpack .../108-dconf-service_0.40.0-4build2_armhf.deb ... 653s Unpacking dconf-service (0.40.0-4build2) ... 653s Selecting previously unselected package dconf-gsettings-backend:armhf. 653s Preparing to unpack .../109-dconf-gsettings-backend_0.40.0-4build2_armhf.deb ... 653s Unpacking dconf-gsettings-backend:armhf (0.40.0-4build2) ... 653s Selecting previously unselected package libgtk-3-common. 653s Preparing to unpack .../110-libgtk-3-common_3.24.43-1ubuntu1_all.deb ... 653s Unpacking libgtk-3-common (3.24.43-1ubuntu1) ... 653s Selecting previously unselected package libgtk-3-0t64:armhf. 653s Preparing to unpack .../111-libgtk-3-0t64_3.24.43-1ubuntu1_armhf.deb ... 653s Unpacking libgtk-3-0t64:armhf (3.24.43-1ubuntu1) ... 653s Selecting previously unselected package libglvnd0:armhf. 653s Preparing to unpack .../112-libglvnd0_1.7.0-1build1_armhf.deb ... 653s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 653s Selecting previously unselected package libglapi-mesa:armhf. 653s Preparing to unpack .../113-libglapi-mesa_24.0.9-0ubuntu2_armhf.deb ... 653s Unpacking libglapi-mesa:armhf (24.0.9-0ubuntu2) ... 654s Selecting previously unselected package libx11-xcb1:armhf. 654s Preparing to unpack .../114-libx11-xcb1_2%3a1.8.7-1build1_armhf.deb ... 654s Unpacking libx11-xcb1:armhf (2:1.8.7-1build1) ... 654s Selecting previously unselected package libxcb-dri2-0:armhf. 654s Preparing to unpack .../115-libxcb-dri2-0_1.17.0-2_armhf.deb ... 654s Unpacking libxcb-dri2-0:armhf (1.17.0-2) ... 654s Selecting previously unselected package libxcb-dri3-0:armhf. 654s Preparing to unpack .../116-libxcb-dri3-0_1.17.0-2_armhf.deb ... 654s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 654s Selecting previously unselected package libxcb-glx0:armhf. 654s Preparing to unpack .../117-libxcb-glx0_1.17.0-2_armhf.deb ... 654s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 654s Selecting previously unselected package libxcb-present0:armhf. 654s Preparing to unpack .../118-libxcb-present0_1.17.0-2_armhf.deb ... 654s Unpacking libxcb-present0:armhf (1.17.0-2) ... 654s Selecting previously unselected package libxcb-randr0:armhf. 654s Preparing to unpack .../119-libxcb-randr0_1.17.0-2_armhf.deb ... 654s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 654s Selecting previously unselected package libxcb-sync1:armhf. 654s Preparing to unpack .../120-libxcb-sync1_1.17.0-2_armhf.deb ... 654s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 654s Selecting previously unselected package libxcb-xfixes0:armhf. 654s Preparing to unpack .../121-libxcb-xfixes0_1.17.0-2_armhf.deb ... 654s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 654s Selecting previously unselected package libxshmfence1:armhf. 654s Preparing to unpack .../122-libxshmfence1_1.3-1build5_armhf.deb ... 654s Unpacking libxshmfence1:armhf (1.3-1build5) ... 654s Selecting previously unselected package libxxf86vm1:armhf. 654s Preparing to unpack .../123-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 654s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 654s Selecting previously unselected package libvulkan1:armhf. 654s Preparing to unpack .../124-libvulkan1_1.3.283.0-1_armhf.deb ... 654s Unpacking libvulkan1:armhf (1.3.283.0-1) ... 654s Selecting previously unselected package libdrm-amdgpu1:armhf. 654s Preparing to unpack .../125-libdrm-amdgpu1_2.4.121-2_armhf.deb ... 654s Unpacking libdrm-amdgpu1:armhf (2.4.121-2) ... 654s Selecting previously unselected package libdrm-nouveau2:armhf. 654s Preparing to unpack .../126-libdrm-nouveau2_2.4.121-2_armhf.deb ... 654s Unpacking libdrm-nouveau2:armhf (2.4.121-2) ... 654s Selecting previously unselected package libdrm-radeon1:armhf. 654s Preparing to unpack .../127-libdrm-radeon1_2.4.121-2_armhf.deb ... 654s Unpacking libdrm-radeon1:armhf (2.4.121-2) ... 654s Selecting previously unselected package libllvm17t64:armhf. 654s Preparing to unpack .../128-libllvm17t64_1%3a17.0.6-12_armhf.deb ... 654s Unpacking libllvm17t64:armhf (1:17.0.6-12) ... 655s Selecting previously unselected package libgl1-mesa-dri:armhf. 655s Preparing to unpack .../129-libgl1-mesa-dri_24.0.9-0ubuntu2_armhf.deb ... 655s Unpacking libgl1-mesa-dri:armhf (24.0.9-0ubuntu2) ... 655s Selecting previously unselected package libglx-mesa0:armhf. 655s Preparing to unpack .../130-libglx-mesa0_24.0.9-0ubuntu2_armhf.deb ... 655s Unpacking libglx-mesa0:armhf (24.0.9-0ubuntu2) ... 655s Selecting previously unselected package libglx0:armhf. 655s Preparing to unpack .../131-libglx0_1.7.0-1build1_armhf.deb ... 655s Unpacking libglx0:armhf (1.7.0-1build1) ... 655s Selecting previously unselected package libgl1:armhf. 655s Preparing to unpack .../132-libgl1_1.7.0-1build1_armhf.deb ... 655s Unpacking libgl1:armhf (1.7.0-1build1) ... 655s Selecting previously unselected package libasound2-data. 656s Preparing to unpack .../133-libasound2-data_1.2.12-1_all.deb ... 656s Unpacking libasound2-data (1.2.12-1) ... 656s Selecting previously unselected package libasound2t64:armhf. 656s Preparing to unpack .../134-libasound2t64_1.2.12-1_armhf.deb ... 656s Unpacking libasound2t64:armhf (1.2.12-1) ... 656s Selecting previously unselected package libgif7:armhf. 656s Preparing to unpack .../135-libgif7_5.2.2-1ubuntu1_armhf.deb ... 656s Unpacking libgif7:armhf (5.2.2-1ubuntu1) ... 656s Selecting previously unselected package x11-common. 656s Preparing to unpack .../136-x11-common_1%3a7.7+23ubuntu3_all.deb ... 656s Unpacking x11-common (1:7.7+23ubuntu3) ... 656s Selecting previously unselected package libxtst6:armhf. 656s Preparing to unpack .../137-libxtst6_2%3a1.2.3-1.1build1_armhf.deb ... 656s Unpacking libxtst6:armhf (2:1.2.3-1.1build1) ... 656s Selecting previously unselected package openjdk-21-jre:armhf. 656s Preparing to unpack .../138-openjdk-21-jre_21.0.4+7-1ubuntu2_armhf.deb ... 656s Unpacking openjdk-21-jre:armhf (21.0.4+7-1ubuntu2) ... 656s Selecting previously unselected package default-jre. 656s Preparing to unpack .../139-default-jre_2%3a1.21-75+exp1_armhf.deb ... 656s Unpacking default-jre (2:1.21-75+exp1) ... 656s Selecting previously unselected package cgview. 656s Preparing to unpack .../140-cgview_0.0.20100111-7_all.deb ... 656s Unpacking cgview (0.0.20100111-7) ... 656s Selecting previously unselected package ncbi-data. 656s Preparing to unpack .../141-ncbi-data_6.1.20170106+dfsg2-3_all.deb ... 656s Unpacking ncbi-data (6.1.20170106+dfsg2-3) ... 656s Selecting previously unselected package libmbedcrypto7t64:armhf. 657s Preparing to unpack .../142-libmbedcrypto7t64_2.28.8-1_armhf.deb ... 657s Unpacking libmbedcrypto7t64:armhf (2.28.8-1) ... 657s Selecting previously unselected package libmbedx509-1t64:armhf. 657s Preparing to unpack .../143-libmbedx509-1t64_2.28.8-1_armhf.deb ... 657s Unpacking libmbedx509-1t64:armhf (2.28.8-1) ... 657s Selecting previously unselected package libmbedtls14t64:armhf. 657s Preparing to unpack .../144-libmbedtls14t64_2.28.8-1_armhf.deb ... 657s Unpacking libmbedtls14t64:armhf (2.28.8-1) ... 657s Selecting previously unselected package ncbi-blast+. 657s Preparing to unpack .../145-ncbi-blast+_2.16.0+ds-3_armhf.deb ... 657s Unpacking ncbi-blast+ (2.16.0+ds-3) ... 657s Selecting previously unselected package ncbi-blast+-legacy. 657s Preparing to unpack .../146-ncbi-blast+-legacy_2.16.0+ds-3_all.deb ... 657s Unpacking ncbi-blast+-legacy (2.16.0+ds-3) ... 658s Selecting previously unselected package imagemagick-6.q16. 658s Preparing to unpack .../147-imagemagick-6.q16_8%3a6.9.13.12+dfsg1-1_armhf.deb ... 658s Unpacking imagemagick-6.q16 (8:6.9.13.12+dfsg1-1) ... 658s Selecting previously unselected package imagemagick. 658s Preparing to unpack .../148-imagemagick_8%3a6.9.13.12+dfsg1-1_armhf.deb ... 658s Unpacking imagemagick (8:6.9.13.12+dfsg1-1) ... 658s Selecting previously unselected package liberror-perl. 659s Preparing to unpack .../149-liberror-perl_0.17029-2_all.deb ... 659s Unpacking liberror-perl (0.17029-2) ... 659s Selecting previously unselected package libtie-ixhash-perl. 659s Preparing to unpack .../150-libtie-ixhash-perl_1.23-4_all.deb ... 659s Unpacking libtie-ixhash-perl (1.23-4) ... 659s Selecting previously unselected package libencode-locale-perl. 660s Preparing to unpack .../151-libencode-locale-perl_1.05-3_all.deb ... 660s Unpacking libencode-locale-perl (1.05-3) ... 660s Selecting previously unselected package libtimedate-perl. 661s Preparing to unpack .../152-libtimedate-perl_2.3300-2_all.deb ... 662s Unpacking libtimedate-perl (2.3300-2) ... 663s Selecting previously unselected package libhttp-date-perl. 663s Preparing to unpack .../153-libhttp-date-perl_6.06-1_all.deb ... 663s Unpacking libhttp-date-perl (6.06-1) ... 663s Selecting previously unselected package libfile-listing-perl. 663s Preparing to unpack .../154-libfile-listing-perl_6.16-1_all.deb ... 663s Unpacking libfile-listing-perl (6.16-1) ... 663s Selecting previously unselected package libhtml-tagset-perl. 663s Preparing to unpack .../155-libhtml-tagset-perl_3.24-1_all.deb ... 663s Unpacking libhtml-tagset-perl (3.24-1) ... 663s Selecting previously unselected package liburi-perl. 663s Preparing to unpack .../156-liburi-perl_5.28-1_all.deb ... 663s Unpacking liburi-perl (5.28-1) ... 663s Selecting previously unselected package libhtml-parser-perl:armhf. 663s Preparing to unpack .../157-libhtml-parser-perl_3.82-1_armhf.deb ... 663s Unpacking libhtml-parser-perl:armhf (3.82-1) ... 664s Selecting previously unselected package libhtml-tree-perl. 664s Preparing to unpack .../158-libhtml-tree-perl_5.07-3_all.deb ... 664s Unpacking libhtml-tree-perl (5.07-3) ... 664s Selecting previously unselected package libclone-perl:armhf. 664s Preparing to unpack .../159-libclone-perl_0.46-1build3_armhf.deb ... 664s Unpacking libclone-perl:armhf (0.46-1build3) ... 664s Selecting previously unselected package libio-html-perl. 664s Preparing to unpack .../160-libio-html-perl_1.004-3_all.deb ... 664s Unpacking libio-html-perl (1.004-3) ... 664s Selecting previously unselected package liblwp-mediatypes-perl. 664s Preparing to unpack .../161-liblwp-mediatypes-perl_6.04-2_all.deb ... 664s Unpacking liblwp-mediatypes-perl (6.04-2) ... 664s Selecting previously unselected package libhttp-message-perl. 664s Preparing to unpack .../162-libhttp-message-perl_6.46-1ubuntu1_all.deb ... 664s Unpacking libhttp-message-perl (6.46-1ubuntu1) ... 664s Selecting previously unselected package libhttp-cookies-perl. 664s Preparing to unpack .../163-libhttp-cookies-perl_6.11-1_all.deb ... 664s Unpacking libhttp-cookies-perl (6.11-1) ... 664s Selecting previously unselected package libhttp-negotiate-perl. 664s Preparing to unpack .../164-libhttp-negotiate-perl_6.01-2_all.deb ... 664s Unpacking libhttp-negotiate-perl (6.01-2) ... 664s Selecting previously unselected package perl-openssl-defaults:armhf. 664s Preparing to unpack .../165-perl-openssl-defaults_7build3_armhf.deb ... 664s Unpacking perl-openssl-defaults:armhf (7build3) ... 664s Selecting previously unselected package libnet-ssleay-perl:armhf. 664s Preparing to unpack .../166-libnet-ssleay-perl_1.94-1build4_armhf.deb ... 664s Unpacking libnet-ssleay-perl:armhf (1.94-1build4) ... 664s Selecting previously unselected package libio-socket-ssl-perl. 664s Preparing to unpack .../167-libio-socket-ssl-perl_2.088-1_all.deb ... 664s Unpacking libio-socket-ssl-perl (2.088-1) ... 664s Selecting previously unselected package libnet-http-perl. 664s Preparing to unpack .../168-libnet-http-perl_6.23-1_all.deb ... 664s Unpacking libnet-http-perl (6.23-1) ... 664s Selecting previously unselected package liblwp-protocol-https-perl. 664s Preparing to unpack .../169-liblwp-protocol-https-perl_6.14-1_all.deb ... 664s Unpacking liblwp-protocol-https-perl (6.14-1) ... 664s Selecting previously unselected package libtry-tiny-perl. 665s Preparing to unpack .../170-libtry-tiny-perl_0.31-2_all.deb ... 665s Unpacking libtry-tiny-perl (0.31-2) ... 665s Selecting previously unselected package libwww-robotrules-perl. 665s Preparing to unpack .../171-libwww-robotrules-perl_6.02-1_all.deb ... 665s Unpacking libwww-robotrules-perl (6.02-1) ... 665s Selecting previously unselected package libwww-perl. 665s Preparing to unpack .../172-libwww-perl_6.77-1_all.deb ... 665s Unpacking libwww-perl (6.77-1) ... 665s Selecting previously unselected package cct. 665s Preparing to unpack .../173-cct_1%3a1.0.3-1_all.deb ... 665s Unpacking cct (1:1.0.3-1) ... 665s Selecting previously unselected package cct-examples. 665s Preparing to unpack .../174-cct-examples_1%3a1.0.3-1_all.deb ... 665s Unpacking cct-examples (1:1.0.3-1) ... 667s Selecting previously unselected package autopkgtest-satdep. 667s Preparing to unpack .../175-1-autopkgtest-satdep.deb ... 667s Unpacking autopkgtest-satdep (0) ... 667s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 667s Setting up libxcb-dri3-0:armhf (1.17.0-2) ... 667s Setting up liblcms2-2:armhf (2.14-2build1) ... 667s Setting up ncbi-data (6.1.20170106+dfsg2-3) ... 667s Setting up libpixman-1-0:armhf (0.42.2-1build1) ... 667s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 667s Setting up libaom3:armhf (3.9.1-1) ... 667s Setting up libx11-xcb1:armhf (2:1.8.7-1build1) ... 667s Setting up imagemagick-6-common (8:6.9.13.12+dfsg1-1) ... 667s Setting up libdrm-nouveau2:armhf (2.4.121-2) ... 667s Setting up libtie-ixhash-perl (1.23-4) ... 667s Setting up libxdamage1:armhf (1:1.1.6-1build1) ... 667s Setting up libxcb-xfixes0:armhf (1.17.0-2) ... 667s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 667s Setting up hicolor-icon-theme (0.18-1) ... 667s Setting up libxi6:armhf (2:1.8.1-1build1) ... 667s Setting up libmbedcrypto7t64:armhf (2.28.8-1) ... 667s Setting up java-common (0.75+exp1) ... 667s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 667s Setting up libdatrie1:armhf (0.2.13-3build1) ... 667s Setting up libtest-deep-perl (1.204-1) ... 667s Setting up libxcb-render0:armhf (1.17.0-2) ... 667s Setting up libclone-perl:armhf (0.46-1build3) ... 667s Setting up libalgorithm-diff-perl (1.201-1) ... 667s Setting up libdrm-radeon1:armhf (2.4.121-2) ... 667s Setting up libglvnd0:armhf (1.7.0-1build1) ... 667s Setting up libhtml-tagset-perl (3.24-1) ... 667s Setting up libxcb-glx0:armhf (1.17.0-2) ... 667s Setting up unzip (6.0-28ubuntu5) ... 667s Setting up liblwp-mediatypes-perl (6.04-2) ... 667s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 667s Setting up x11-common (1:7.7+23ubuntu3) ... 670s Setting up libtry-tiny-perl (0.31-2) ... 670s Setting up libdeflate0:armhf (1.20-1) ... 670s Setting up perl-openssl-defaults:armhf (7build3) ... 670s Setting up libencode-locale-perl (1.05-3) ... 670s Setting up libxcb-shm0:armhf (1.17.0-2) ... 670s Setting up libgomp1:armhf (14.1.0-5ubuntu1) ... 670s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 670s Setting up libcolord2:armhf (1.4.7-1build2) ... 670s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ... 670s Setting up libxcb-present0:armhf (1.17.0-2) ... 670s Setting up liberror-perl (0.17029-2) ... 670s Setting up libdconf1:armhf (0.40.0-4build2) ... 670s Setting up libasound2-data (1.2.12-1) ... 670s Setting up libio-string-perl (1.08-4) ... 670s Setting up libclass-data-inheritable-perl (0.08-3) ... 670s Setting up libasound2t64:armhf (1.2.12-1) ... 670s Setting up libllvm17t64:armhf (1:17.0.6-12) ... 670s Setting up libfreetype6:armhf (2.13.2+dfsg-1build3) ... 670s Setting up libepoxy0:armhf (1.5.10-1build1) ... 670s Setting up libtext-diff-perl (1.45-2) ... 670s Setting up libxfixes3:armhf (1:6.0.0-2build1) ... 670s Setting up libxcb-sync1:armhf (1.17.0-2) ... 670s Setting up libapache-pom-java (29-2) ... 670s Setting up libavahi-common-data:armhf (0.8-13ubuntu6) ... 670s Setting up libatspi2.0-0t64:armhf (2.52.0-1build1) ... 670s Setting up libxinerama1:armhf (2:1.1.4-3build1) ... 670s Setting up fonts-dejavu-mono (2.37-8) ... 670s Setting up libxml-commons-resolver1.1-java (1.2-11) ... 670s Setting up libio-html-perl (1.004-3) ... 670s Setting up libxrandr2:armhf (2:1.5.4-1) ... 670s Setting up fonts-dejavu-core (2.37-8) ... 670s Setting up libpcsclite1:armhf (2.2.3-1) ... 670s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 670s Setting up libltdl7:armhf (2.4.7-7build1) ... 670s Setting up libfftw3-double3:armhf (3.3.10-1ubuntu3) ... 670s Setting up libglapi-mesa:armhf (24.0.9-0ubuntu2) ... 670s Setting up libvulkan1:armhf (1.3.283.0-1) ... 670s Setting up libwebp7:armhf (1.4.0-0.1) ... 670s Setting up libcapture-tiny-perl (0.48-2) ... 670s Setting up libtimedate-perl (2.3300-2) ... 670s Setting up libxcb-dri2-0:armhf (1.17.0-2) ... 670s Setting up libgif7:armhf (5.2.2-1ubuntu1) ... 670s Setting up libdata-stag-perl (0.14-3) ... 670s Setting up liblqr-1-0:armhf (0.4.2-2.1build2) ... 670s Setting up libxshmfence1:armhf (1.3-1build5) ... 670s Setting up at-spi2-common (2.52.0-1build1) ... 670s Setting up libxcb-randr0:armhf (1.17.0-2) ... 670s Setting up libxml-commons-external-java (1.4.01-6) ... 670s Setting up libjargs-java (1.0.0-5) ... 670s Setting up libsub-uplevel-perl (0.2800-3) ... 670s Setting up libopenjp2-7:armhf (2.5.0-2build3) ... 670s Setting up libharfbuzz0b:armhf (8.3.0-2build2) ... 670s Setting up libthai-data (0.1.29-2build1) ... 670s Setting up libdevel-stacktrace-perl (2.0500-1) ... 670s Setting up libwayland-egl1:armhf (1.22.0-2.1build1) ... 670s Setting up libbio-perl-perl (1.7.8-1) ... 670s Setting up ca-certificates-java (20240118) ... 670s No JRE found. Skipping Java certificates setup. 670s Setting up libxerces2-java (2.12.2-1) ... 670s Setting up libjaxp1.3-java (1.3.05-6) ... 670s Setting up libde265-0:armhf (1.0.15-1build3) ... 670s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 670s Setting up libxcomposite1:armhf (1:0.4.5-1build3) ... 670s Setting up liburi-perl (5.28-1) ... 670s Setting up libdrm-amdgpu1:armhf (2.4.121-2) ... 670s Setting up libwayland-client0:armhf (1.22.0-2.1build1) ... 670s Setting up libnet-ssleay-perl:armhf (1.94-1build4) ... 670s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 670s Setting up libhttp-date-perl (6.06-1) ... 670s Setting up libmbedx509-1t64:armhf (2.28.8-1) ... 670s Setting up java-wrappers (0.4) ... 670s Setting up libatk1.0-0t64:armhf (2.52.0-1build1) ... 670s Setting up libfile-listing-perl (6.16-1) ... 670s Setting up openjdk-21-jre-headless:armhf (21.0.4+7-1ubuntu2) ... 670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode 670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 670s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 670s Setting up libxtst6:armhf (2:1.2.3-1.1build1) ... 670s Setting up libtest-warn-perl (0.37-2) ... 670s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 670s Setting up libxcursor1:armhf (1:1.2.2-1) ... 670s Setting up libgl1-mesa-dri:armhf (24.0.9-0ubuntu2) ... 670s Setting up libcommons-parent-java (56-1) ... 670s Setting up libavahi-common3:armhf (0.8-13ubuntu6) ... 670s Setting up libtest-differences-perl (0.71-1) ... 670s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 670s Setting up libnet-http-perl (6.23-1) ... 670s Setting up dconf-service (0.40.0-4build2) ... 670s Setting up libexception-class-perl (1.45-1) ... 670s Setting up libcommons-lang-java (2.6-10) ... 670s Setting up libthai0:armhf (0.1.29-2build1) ... 670s Setting up libtest-exception-perl (0.43-3) ... 670s Setting up libraw23t64:armhf (0.21.2-2.1build1) ... 670s Setting up libwww-robotrules-perl (6.02-1) ... 670s Setting up libmbedtls14t64:armhf (2.28.8-1) ... 670s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu3) ... 670s Setting up libwayland-cursor0:armhf (1.22.0-2.1build1) ... 670s Setting up libhtml-parser-perl:armhf (3.82-1) ... 670s Setting up libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-1) ... 671s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 671s Setting up libavahi-client3:armhf (0.8-13ubuntu6) ... 671s Setting up libio-socket-ssl-perl (2.088-1) ... 671s Setting up libhttp-message-perl (6.46-1ubuntu1) ... 671s Setting up libatk-bridge2.0-0t64:armhf (2.52.0-1build1) ... 671s Setting up gtk-update-icon-cache (3.24.43-1ubuntu1) ... 671s Setting up libhttp-negotiate-perl (6.01-2) ... 671s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 673s Regenerating fonts cache... done. 674s Setting up libglx-mesa0:armhf (24.0.9-0ubuntu2) ... 674s Setting up libglx0:armhf (1.7.0-1build1) ... 674s Setting up dconf-gsettings-backend:armhf (0.40.0-4build2) ... 674s Setting up libhttp-cookies-perl (6.11-1) ... 674s Setting up libtest-most-perl (0.38-1) ... 674s Setting up libcommons-io-java (2.16.1-1) ... 674s Setting up libhtml-tree-perl (5.07-3) ... 674s Setting up libpango-1.0-0:armhf (1.54.0+ds-1) ... 674s Setting up libxmlgraphics-commons-java (2.8-2) ... 674s Setting up libcairo2:armhf (1.18.0-3build1) ... 674s Setting up ncbi-blast+ (2.16.0+ds-3) ... 674s Setting up libgl1:armhf (1.7.0-1build1) ... 674s Setting up libcairo-gobject2:armhf (1.18.0-3build1) ... 674s Setting up libpangoft2-1.0-0:armhf (1.54.0+ds-1) ... 674s Setting up libcups2t64:armhf (2.4.7-1.2ubuntu9) ... 674s Setting up libgtk-3-common (3.24.43-1ubuntu1) ... 674s Setting up libpangocairo-1.0-0:armhf (1.54.0+ds-1) ... 674s Setting up bioperl (1.7.8-1) ... 674s Setting up ncbi-blast+-legacy (2.16.0+ds-3) ... 674s Setting up libbatik-java (1.17+dfsg-1) ... 674s Setting up adwaita-icon-theme (46.0-1) ... 674s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 674s Setting up libheif-plugin-aomdec:armhf (1.17.6-4build1) ... 674s Setting up liblwp-protocol-https-perl (6.14-1) ... 674s Setting up libheif-plugin-libde265:armhf (1.17.6-4build1) ... 674s Setting up libwww-perl (6.77-1) ... 674s Setting up libheif1:armhf (1.17.6-4build1) ... 674s Setting up libmagickcore-6.q16-7t64:armhf (8:6.9.13.12+dfsg1-1) ... 674s Setting up libmagickwand-6.q16-7t64:armhf (8:6.9.13.12+dfsg1-1) ... 674s Setting up humanity-icon-theme (0.6.16) ... 674s Setting up imagemagick-6.q16 (8:6.9.13.12+dfsg1-1) ... 674s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode 674s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode 674s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode 674s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode 674s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode 674s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode 674s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode 674s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode 674s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode 675s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode 675s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode 675s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode 675s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode 675s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode 675s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode 675s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode 675s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode 675s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode 675s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode 675s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode 675s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode 675s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode 675s Setting up ubuntu-mono (24.04-0ubuntu1) ... 675s Setting up imagemagick (8:6.9.13.12+dfsg1-1) ... 675s Processing triggers for libc-bin (2.39-0ubuntu9) ... 676s Processing triggers for man-db (2.12.1-2) ... 678s Processing triggers for libglib2.0-0t64:armhf (2.80.4-1ubuntu1) ... 678s Setting up libgtk-3-0t64:armhf (3.24.43-1ubuntu1) ... 679s Processing triggers for ca-certificates-java (20240118) ... 684s Adding debian:ACCVRAIZ1.pem 684s Adding debian:AC_RAIZ_FNMT-RCM.pem 684s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 684s Adding debian:ANF_Secure_Server_Root_CA.pem 684s Adding debian:Actalis_Authentication_Root_CA.pem 684s Adding debian:AffirmTrust_Commercial.pem 684s Adding debian:AffirmTrust_Networking.pem 684s Adding debian:AffirmTrust_Premium.pem 684s Adding debian:AffirmTrust_Premium_ECC.pem 684s Adding debian:Amazon_Root_CA_1.pem 684s Adding debian:Amazon_Root_CA_2.pem 684s Adding debian:Amazon_Root_CA_3.pem 684s Adding debian:Amazon_Root_CA_4.pem 684s Adding debian:Atos_TrustedRoot_2011.pem 684s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 684s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 684s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 684s Adding debian:BJCA_Global_Root_CA1.pem 684s Adding debian:BJCA_Global_Root_CA2.pem 684s Adding debian:Baltimore_CyberTrust_Root.pem 684s Adding debian:Buypass_Class_2_Root_CA.pem 684s Adding debian:Buypass_Class_3_Root_CA.pem 684s Adding debian:CA_Disig_Root_R2.pem 684s Adding debian:CFCA_EV_ROOT.pem 684s Adding debian:COMODO_Certification_Authority.pem 684s Adding debian:COMODO_ECC_Certification_Authority.pem 684s Adding debian:COMODO_RSA_Certification_Authority.pem 684s Adding debian:Certainly_Root_E1.pem 684s Adding debian:Certainly_Root_R1.pem 684s Adding debian:Certigna.pem 684s Adding debian:Certigna_Root_CA.pem 684s Adding debian:Certum_EC-384_CA.pem 684s Adding debian:Certum_Trusted_Network_CA.pem 684s Adding debian:Certum_Trusted_Network_CA_2.pem 684s Adding debian:Certum_Trusted_Root_CA.pem 684s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 684s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 684s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 684s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 684s Adding debian:Comodo_AAA_Services_root.pem 684s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 684s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 684s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 684s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 684s Adding debian:DigiCert_Assured_ID_Root_CA.pem 684s Adding debian:DigiCert_Assured_ID_Root_G2.pem 684s Adding debian:DigiCert_Assured_ID_Root_G3.pem 684s Adding debian:DigiCert_Global_Root_CA.pem 684s Adding debian:DigiCert_Global_Root_G2.pem 684s Adding debian:DigiCert_Global_Root_G3.pem 684s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 684s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 684s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 684s Adding debian:DigiCert_Trusted_Root_G4.pem 684s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 684s Adding debian:Entrust_Root_Certification_Authority.pem 684s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 684s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 684s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 684s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 684s Adding debian:GLOBALTRUST_2020.pem 684s Adding debian:GTS_Root_R1.pem 684s Adding debian:GTS_Root_R2.pem 684s Adding debian:GTS_Root_R3.pem 684s Adding debian:GTS_Root_R4.pem 684s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 684s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 684s Adding debian:GlobalSign_Root_CA.pem 684s Adding debian:GlobalSign_Root_CA_-_R3.pem 684s Adding debian:GlobalSign_Root_CA_-_R6.pem 684s Adding debian:GlobalSign_Root_E46.pem 684s Adding debian:GlobalSign_Root_R46.pem 684s Adding debian:Go_Daddy_Class_2_CA.pem 684s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 684s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 684s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 684s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 684s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 684s Adding debian:HiPKI_Root_CA_-_G1.pem 684s Adding debian:Hongkong_Post_Root_CA_3.pem 684s Adding debian:ISRG_Root_X1.pem 684s Adding debian:ISRG_Root_X2.pem 684s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 684s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 684s Adding debian:Izenpe.com.pem 684s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 684s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 684s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 684s Adding debian:NAVER_Global_Root_Certification_Authority.pem 684s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 684s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 684s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 684s Adding debian:QuoVadis_Root_CA_1_G3.pem 684s Adding debian:QuoVadis_Root_CA_2.pem 684s Adding debian:QuoVadis_Root_CA_2_G3.pem 684s Adding debian:QuoVadis_Root_CA_3.pem 684s Adding debian:QuoVadis_Root_CA_3_G3.pem 684s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 684s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 684s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 684s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 684s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 684s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 684s Adding debian:SZAFIR_ROOT_CA2.pem 684s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 684s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 684s Adding debian:SecureSign_RootCA11.pem 684s Adding debian:SecureTrust_CA.pem 684s Adding debian:Secure_Global_CA.pem 684s Adding debian:Security_Communication_ECC_RootCA1.pem 684s Adding debian:Security_Communication_RootCA2.pem 684s Adding debian:Security_Communication_RootCA3.pem 684s Adding debian:Security_Communication_Root_CA.pem 684s Adding debian:Starfield_Class_2_CA.pem 684s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 684s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 684s Adding debian:SwissSign_Gold_CA_-_G2.pem 684s Adding debian:SwissSign_Silver_CA_-_G2.pem 684s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 684s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 684s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 684s Adding debian:TWCA_Global_Root_CA.pem 685s Adding debian:TWCA_Root_Certification_Authority.pem 685s Adding debian:TeliaSonera_Root_CA_v1.pem 685s Adding debian:Telia_Root_CA_v2.pem 685s Adding debian:TrustAsia_Global_Root_CA_G3.pem 685s Adding debian:TrustAsia_Global_Root_CA_G4.pem 685s Adding debian:Trustwave_Global_Certification_Authority.pem 685s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 685s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 685s Adding debian:TunTrust_Root_CA.pem 685s Adding debian:UCA_Extended_Validation_Root.pem 685s Adding debian:UCA_Global_G2_Root.pem 685s Adding debian:USERTrust_ECC_Certification_Authority.pem 685s Adding debian:USERTrust_RSA_Certification_Authority.pem 685s Adding debian:XRamp_Global_CA_Root.pem 685s Adding debian:certSIGN_ROOT_CA.pem 685s Adding debian:certSIGN_Root_CA_G2.pem 685s Adding debian:e-Szigno_Root_CA_2017.pem 685s Adding debian:ePKI_Root_Certification_Authority.pem 685s Adding debian:emSign_ECC_Root_CA_-_C3.pem 685s Adding debian:emSign_ECC_Root_CA_-_G3.pem 685s Adding debian:emSign_Root_CA_-_C1.pem 685s Adding debian:emSign_Root_CA_-_G1.pem 685s Adding debian:vTrus_ECC_Root_CA.pem 685s Adding debian:vTrus_Root_CA.pem 685s done. 685s Setting up openjdk-21-jre:armhf (21.0.4+7-1ubuntu2) ... 685s Setting up default-jre-headless (2:1.21-75+exp1) ... 685s Setting up default-jre (2:1.21-75+exp1) ... 685s Setting up cgview (0.0.20100111-7) ... 685s Setting up cct (1:1.0.3-1) ... 685s Setting up cct-examples (1:1.0.3-1) ... 685s Setting up autopkgtest-satdep (0) ... 685s Processing triggers for libc-bin (2.39-0ubuntu9) ... 725s (Reading database ... 76090 files and directories currently installed.) 725s Removing autopkgtest-satdep (0) ... 730s autopkgtest [02:33:39]: test run-unit-test: [----------------------- 737s 'Check environment' test passed 737s Copying and extracting COG files 738s Preparing COG BLAST database 748s COG BLAST database created 748s Processing project 'test_blastn' 748s Processing project 'test_blastn' using configuration 'project_settings.conf' 748s [Saturday July 27 02:33:57 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_blastn/project_settings.conf. 748s [Saturday July 27 02:33:57 2024] [Notice] Splitting the reference genome sequence in /var/tmp/cct/test_output/test_blastn/reference_genome for BLAST searches. 748s [Saturday July 27 02:33:57 2024] [Notice] Reference genome sequence has been split and written to /var/tmp/cct/test_output/test_blastn/reference_genome/split. 748s [Saturday July 27 02:33:57 2024] [Notice] Splitting the comparison genome sequences in /var/tmp/cct/test_output/test_blastn/comparison_genomes for BLAST searches. 749s [Saturday July 27 02:33:58 2024] [Notice] Comparison genome sequences have been split and written to /var/tmp/cct/test_output/test_blastn/comparison_genomes/split. 749s [Saturday July 27 02:33:58 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_blastn/comparison_genomes/split. 749s [Saturday July 27 02:33:58 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_blastn/blast/blast_db. 749s [Saturday July 27 02:33:58 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_blastn/reference_genome/split and databases in /var/tmp/cct/test_output/test_blastn/blast/blast_db. 750s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 750s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 750s Writing HSP to file. 750s Writing HSP to file. 750s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn to view the BLAST results. 750s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 751s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 751s Writing HSP to file. 751s Writing HSP to file. 751s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn to view the BLAST results. 751s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 751s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 751s Writing HSP to file. 751s Writing HSP to file. 751s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn to view the BLAST results. 751s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 751s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 752s Writing HSP to file. 752s Writing HSP to file. 752s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn to view the BLAST results. 752s [Saturday July 27 02:34:01 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_blastn/blast/blast_results_local. 752s [Saturday July 27 02:34:01 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_blastn/reference_genome. 752s [Saturday July 27 02:34:01 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_blastn/features. 752s [Saturday July 27 02:34:01 2024] [Notice] Creating CGView XML files. 752s [Saturday July 27 02:34:01 2024] [Notice] The following BLAST results will be drawn, from outside to center: 752s [Saturday July 27 02:34:01 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn 752s [Saturday July 27 02:34:01 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn 752s [Saturday July 27 02:34:01 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn 752s [Saturday July 27 02:34:01 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn 753s Creating XML for feature sets on the outside of the backbone circle. 753s Feature sets written first are drawn closest to the backbone circle. 753s Creating XML for ORFs that are in reading frame +1. 753s Creating XML for ORFs that are in reading frame +2. 753s Creating XML for ORFs that are in reading frame +3. 753s Creating XML for feature sets on the inside of the backbone circle. 753s Feature sets written first are drawn closest to the backbone circle. 753s Creating XML for ORFs that are in reading frame -1. 753s Creating XML for ORFs that are in reading frame -2. 753s Creating XML for ORFs that are in reading frame -3. 753s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn. 753s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn. 753s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn. 753s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn. 753s Creating XML for GC content information. 753s Plotting GC content using a window size of 500 and a step of 1. 753s The maximum GC content value is 0.5768. 753s The minimum GC content value is 0.4311. 753s The average GC content value is 0.5051. 753s GC content will be scaled based on the maximum and minimum values. 753s GC content will be plotted as the deviation from the average value. 753s Creating XML for GC skew information. 753s Plotting GC skew using a window size of 500 and a step of 1. 753s The maximum GC skew value is 0.1587. 753s The minimum GC skew value is -0.2263. 753s The average GC skew value is -0.0036. 753s GC skew will be scaled based on the maximum and minimum values. 753s GC skew will be plotted as the deviation from the average value. 753s CGView XML file complete. 753s The recommended CGView command is: 753s ---------------------------------- 753s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_blastn/maps/cgview_xml/test_blastn_project_settings.conf_medium.xml -o map.png 753s Success! 753s The following key-values were used: 753s ----------------------------------- 753s arrowheadLength=6 753s average=T 753s atColorNeg=rgb(51,51,51) 753s atColorPos=rgb(51,51,51) 753s at_content=F 753s atSkewColorNeg=rgb(0,0,153) 753s atSkewColorPos=rgb(153,153,0) 753s at_skew=F 753s backboneColor=rgb(102,102,102) 753s backboneRadius=1000 753s backboneThickness=8 753s backgroundColor=white 753s blast_divider_ruler=F 753s blastRulerColor=rgb(255,165,0) 753s borderColor=black 753s combined_orfs=F 753s details=T 753s draw_divider_rings=T 753s featureOpacity=0.5 753s featureOpacityOther=0.5 753s featureSlotSpacing=6 753s featureThickness=24.27 753s featureThicknessPlot=145.64 753s feature_labels=F 753s gcColorNeg=rgb(0,0,0) 753s gcColorPos=rgb(0,0,0) 753s gc_content=T 753s gcSkewColorNeg=rgb(153,0,153) 753s gcSkewColorPos=rgb(0,153,0) 753s gc_skew=T 753s gene_decoration=arrow 753s gene_labels=F 753s global_label=true 753s height=3000 753s hit_labels=F 753s labelFontSize=15 753s labelPlacementQuality=good 753s labelLineLength=200 753s labelLineThickness=4 753s legend=T 753s legendFontSize=20 753s orf_labels=F 753s maxLabelLength=20 753s maxLegendLength=30 753s maxTitleLength=50 753s minimumFeatureLength=0.2 753s moveInnerLabelsToOuter=false 753s orfColor=rgb(204,0,0) 753s orfs=T 753s orf_size=25 753s otherColor=rgb(51,51,51) 753s parse_reading_frame=F 753s proteinColor=rgb(0,0,153) 753s reading_frames=F 753s rRNAColor=rgb(153,0,153) 753s rulerFontColor=rgb(0,0,0) 753s rulerFontSize=30 753s rulerPadding=40 753s scale=T 753s scale_blast=T 753s show_sequence_features=T 753s show_queries=F 753s startColor=rgb(153,0,153) 753s starts=ttg|ctg|att|atc|ata|atg|gtg 753s step=1 753s stopColor=rgb(204,0,0) 753s stops=taa|tag|tga 753s title= 753s titleFontSize=80 753s tickColor=rgb(0,51,0) 753s tickLength=15 753s tickThickness=6 753s tick_density=0.166666666666667 753s tRNAColor=rgb(153,0,0) 753s useInnerLabels=true 753s use_opacity=F 753s width=3000 753s window=500 753s ----------------------------------- 753s [Saturday July 27 02:34:02 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_blastn/maps/cgview_xml. 753s [Saturday July 27 02:34:02 2024] [Notice] Creating CGView maps. 753s Parsing XML input. 758s Drawing features.......................... 758s Positioning and drawing 0 labels.......................... 758s 0 labels were removed. 758s Drawing tick marks. 760s Drawing legends. 760s The map has been drawn. 760s Writing picture to /var/tmp/cct/test_output/test_blastn/maps/test_blastn_project_settings.png 761s Writing HTML to /var/tmp/cct/test_output/test_blastn/maps/test_blastn_project_settings.html 761s [Saturday July 27 02:34:10 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_blastn/maps. 761s Processing project 'test_blastp' 761s Processing project 'test_blastp' using configuration 'project_settings.conf' 761s [Saturday July 27 02:34:10 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_blastp/project_settings.conf. 761s [Saturday July 27 02:34:10 2024] [Notice] Extracting ORF translations from reference genome sequence in /var/tmp/cct/test_output/test_blastp/reference_genome for BLAST searches. 761s Extracting ORFs in reading frame 1 on strand 1. 761s Extracting ORFs in reading frame 2 on strand 1. 761s Extracting ORFs in reading frame 3 on strand 1. 761s Extracting ORFs in reading frame 1 on strand -1. 761s Extracting ORFs in reading frame 2 on strand -1. 761s Extracting ORFs in reading frame 3 on strand -1. 761s A total of 338 records were written to /var/tmp/cct/test_output/test_blastp/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs. 761s [Saturday July 27 02:34:10 2024] [Notice] Reference genome ORF translations have been written to /var/tmp/cct/test_output/test_blastp/reference_genome/orfs. 761s [Saturday July 27 02:34:10 2024] [Notice] Copying protein sequences in /var/tmp/cct/test_output/test_blastp/comparison_genomes for BLAST searches. 761s [Saturday July 27 02:34:10 2024] [Notice] Protein sequences have been copied to /var/tmp/cct/test_output/test_blastp/comparison_genomes/proteins. 761s [Saturday July 27 02:34:10 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_blastp/comparison_genomes/proteins. 761s [Saturday July 27 02:34:10 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_blastp/blast/blast_db. 761s [Saturday July 27 02:34:10 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_blastp/reference_genome/orfs and databases in /var/tmp/cct/test_output/test_blastp/blast/blast_db. 761s [Saturday July 27 02:34:10 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_blastp/blast/blast_results_local. 761s [Saturday July 27 02:34:10 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_blastp/reference_genome. 761s [Saturday July 27 02:34:10 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_blastp/features. 761s [Saturday July 27 02:34:10 2024] [Notice] Creating CGView XML files. 761s Creating XML for feature sets on the outside of the backbone circle. 761s Feature sets written first are drawn closest to the backbone circle. 761s Creating XML for ORFs that are in reading frame +1. 761s Creating XML for ORFs that are in reading frame +2. 761s Creating XML for ORFs that are in reading frame +3. 761s Creating XML for feature sets on the inside of the backbone circle. 761s Feature sets written first are drawn closest to the backbone circle. 761s Creating XML for ORFs that are in reading frame -1. 761s Creating XML for ORFs that are in reading frame -2. 761s Creating XML for ORFs that are in reading frame -3. 761s Creating XML for GC content information. 761s Plotting GC content using a window size of 500 and a step of 1. 761s The maximum GC content value is 0.5768. 761s The minimum GC content value is 0.4311. 761s The average GC content value is 0.5051. 761s GC content will be scaled based on the maximum and minimum values. 761s GC content will be plotted as the deviation from the average value. 761s Creating XML for GC skew information. 761s Plotting GC skew using a window size of 500 and a step of 1. 761s The maximum GC skew value is 0.1587. 761s The minimum GC skew value is -0.2263. 761s The average GC skew value is -0.0036. 761s GC skew will be scaled based on the maximum and minimum values. 761s GC skew will be plotted as the deviation from the average value. 761s CGView XML file complete. 761s The recommended CGView command is: 761s ---------------------------------- 761s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_blastp/maps/cgview_xml/test_blastp_project_settings.conf_medium.xml -o map.png 761s Success! 761s The following key-values were used: 761s ----------------------------------- 761s arrowheadLength=6 761s average=T 761s atColorNeg=rgb(51,51,51) 761s atColorPos=rgb(51,51,51) 761s at_content=F 761s atSkewColorNeg=rgb(0,0,153) 761s atSkewColorPos=rgb(153,153,0) 761s at_skew=F 761s backboneColor=rgb(102,102,102) 761s backboneRadius=1000 761s backboneThickness=8 761s backgroundColor=white 761s blast_divider_ruler=F 761s blastRulerColor=rgb(255,165,0) 761s borderColor=black 761s combined_orfs=F 761s details=T 761s draw_divider_rings=T 761s featureOpacity=0.5 761s featureOpacityOther=0.5 761s featureSlotSpacing=6 761s featureThickness=30 761s featureThicknessPlot=186.00 761s feature_labels=F 761s gcColorNeg=rgb(0,0,0) 761s gcColorPos=rgb(0,0,0) 761s gc_content=T 761s gcSkewColorNeg=rgb(153,0,153) 761s gcSkewColorPos=rgb(0,153,0) 761s gc_skew=T 761s gene_decoration=arrow 761s gene_labels=F 761s global_label=true 761s height=3000 761s hit_labels=F 761s labelFontSize=15 761s labelPlacementQuality=good 761s labelLineLength=200 761s labelLineThickness=4 761s legend=T 761s legendFontSize=20 761s orf_labels=F 761s maxLabelLength=20 761s maxLegendLength=30 761s maxTitleLength=50 761s minimumFeatureLength=0.2 761s moveInnerLabelsToOuter=false 761s orfColor=rgb(204,0,0) 761s orfs=T 761s orf_size=25 761s otherColor=rgb(51,51,51) 761s parse_reading_frame=F 761s proteinColor=rgb(0,0,153) 761s reading_frames=F 761s rRNAColor=rgb(153,0,153) 761s rulerFontColor=rgb(0,0,0) 761s rulerFontSize=30 761s rulerPadding=40 761s scale=T 761s scale_blast=T 761s show_sequence_features=T 761s show_queries=F 761s startColor=rgb(153,0,153) 761s starts=ttg|ctg|att|atc|ata|atg|gtg 761s step=1 761s stopColor=rgb(204,0,0) 761s stops=taa|tag|tga 761s title= 761s titleFontSize=80 761s tickColor=rgb(0,51,0) 761s tickLength=15 761s tickThickness=6 761s tick_density=0.166666666666667 761s tRNAColor=rgb(153,0,0) 761s useInnerLabels=true 761s use_opacity=F 761s width=3000 761s window=500 761s ----------------------------------- 761s [Saturday July 27 02:34:10 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_blastp/maps/cgview_xml. 761s [Saturday July 27 02:34:10 2024] [Notice] Creating CGView maps. 762s Parsing XML input. 766s Drawing features.................. 766s Positioning and drawing 0 labels.......................... 766s 0 labels were removed. 766s Drawing tick marks. 766s Drawing legends. 766s The map has been drawn. 766s Writing picture to /var/tmp/cct/test_output/test_blastp/maps/test_blastp_project_settings.png 767s Writing HTML to /var/tmp/cct/test_output/test_blastp/maps/test_blastp_project_settings.html 767s [Saturday July 27 02:34:16 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_blastp/maps. 767s Processing project 'test_blastx' 767s Processing project 'test_blastx' using configuration 'project_settings.conf' 767s [Saturday July 27 02:34:16 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_blastx/project_settings.conf. 767s [Saturday July 27 02:34:16 2024] [Notice] Splitting the reference genome sequence in /var/tmp/cct/test_output/test_blastx/reference_genome for BLAST searches. 768s [Saturday July 27 02:34:17 2024] [Notice] Reference genome sequence has been split and written to /var/tmp/cct/test_output/test_blastx/reference_genome/split. 768s [Saturday July 27 02:34:17 2024] [Notice] Copying protein sequences in /var/tmp/cct/test_output/test_blastx/comparison_genomes for BLAST searches. 768s [Saturday July 27 02:34:17 2024] [Notice] Protein sequences have been copied to /var/tmp/cct/test_output/test_blastx/comparison_genomes/proteins. 768s [Saturday July 27 02:34:17 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_blastx/comparison_genomes/proteins. 768s [Saturday July 27 02:34:17 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_blastx/blast/blast_db. 768s [Saturday July 27 02:34:17 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_blastx/reference_genome/split and databases in /var/tmp/cct/test_output/test_blastx/blast/blast_db. 768s [Saturday July 27 02:34:17 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_blastx/blast/blast_results_local. 768s [Saturday July 27 02:34:17 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_blastx/reference_genome. 768s [Saturday July 27 02:34:17 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_blastx/features. 768s [Saturday July 27 02:34:17 2024] [Notice] Creating CGView XML files. 768s Creating XML for feature sets on the outside of the backbone circle. 768s Feature sets written first are drawn closest to the backbone circle. 768s Creating XML for ORFs that are in reading frame +1. 768s Creating XML for ORFs that are in reading frame +2. 768s Creating XML for ORFs that are in reading frame +3. 768s Creating XML for feature sets on the inside of the backbone circle. 768s Feature sets written first are drawn closest to the backbone circle. 768s Creating XML for ORFs that are in reading frame -1. 768s Creating XML for ORFs that are in reading frame -2. 768s Creating XML for ORFs that are in reading frame -3. 768s Creating XML for GC content information. 768s Plotting GC content using a window size of 500 and a step of 1. 768s The maximum GC content value is 0.5768. 768s The minimum GC content value is 0.4311. 768s The average GC content value is 0.5051. 768s GC content will be scaled based on the maximum and minimum values. 768s GC content will be plotted as the deviation from the average value. 768s Creating XML for GC skew information. 768s Plotting GC skew using a window size of 500 and a step of 1. 768s The maximum GC skew value is 0.1587. 768s The minimum GC skew value is -0.2263. 768s The average GC skew value is -0.0036. 768s GC skew will be scaled based on the maximum and minimum values. 768s GC skew will be plotted as the deviation from the average value. 768s CGView XML file complete. 768s The recommended CGView command is: 768s ---------------------------------- 768s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_blastx/maps/cgview_xml/test_blastx_project_settings.conf_medium.xml -o map.png 768s Success! 768s The following key-values were used: 768s ----------------------------------- 768s arrowheadLength=6 768s average=T 768s atColorNeg=rgb(51,51,51) 768s atColorPos=rgb(51,51,51) 768s at_content=F 768s atSkewColorNeg=rgb(0,0,153) 768s atSkewColorPos=rgb(153,153,0) 768s at_skew=F 768s backboneColor=rgb(102,102,102) 768s backboneRadius=1000 768s backboneThickness=8 768s backgroundColor=white 768s blast_divider_ruler=F 768s blastRulerColor=rgb(255,165,0) 768s borderColor=black 768s combined_orfs=F 768s details=T 768s draw_divider_rings=T 768s featureOpacity=0.5 768s featureOpacityOther=0.5 768s featureSlotSpacing=6 768s featureThickness=30 768s featureThicknessPlot=186.00 768s feature_labels=F 768s gcColorNeg=rgb(0,0,0) 768s gcColorPos=rgb(0,0,0) 768s gc_content=T 768s gcSkewColorNeg=rgb(153,0,153) 768s gcSkewColorPos=rgb(0,153,0) 768s gc_skew=T 768s gene_decoration=arrow 768s gene_labels=F 768s global_label=true 768s height=3000 768s hit_labels=F 768s labelFontSize=15 768s labelPlacementQuality=good 768s labelLineLength=200 768s labelLineThickness=4 768s legend=T 768s legendFontSize=20 768s orf_labels=F 768s maxLabelLength=20 768s maxLegendLength=30 768s maxTitleLength=50 768s minimumFeatureLength=0.2 768s moveInnerLabelsToOuter=false 768s orfColor=rgb(204,0,0) 768s orfs=T 768s orf_size=25 768s otherColor=rgb(51,51,51) 768s parse_reading_frame=T 768s proteinColor=rgb(0,0,153) 768s reading_frames=F 768s rRNAColor=rgb(153,0,153) 768s rulerFontColor=rgb(0,0,0) 768s rulerFontSize=30 768s rulerPadding=40 768s scale=T 768s scale_blast=T 768s show_sequence_features=T 768s show_queries=T 768s startColor=rgb(153,0,153) 768s starts=ttg|ctg|att|atc|ata|atg|gtg 768s step=1 768s stopColor=rgb(204,0,0) 768s stops=taa|tag|tga 768s title= 768s titleFontSize=80 768s tickColor=rgb(0,51,0) 768s tickLength=15 768s tickThickness=6 768s tick_density=0.166666666666667 768s tRNAColor=rgb(153,0,0) 768s useInnerLabels=true 768s use_opacity=F 768s width=3000 768s window=500 768s ----------------------------------- 768s [Saturday July 27 02:34:17 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_blastx/maps/cgview_xml. 768s [Saturday July 27 02:34:17 2024] [Notice] Creating CGView maps. 769s Parsing XML input. 779s Drawing features.................. 779s Positioning and drawing 0 labels.......................... 779s 0 labels were removed. 779s Drawing tick marks. 781s Drawing legends. 781s The map has been drawn. 781s Writing picture to /var/tmp/cct/test_output/test_blastx/maps/test_blastx_project_settings.png 782s Writing HTML to /var/tmp/cct/test_output/test_blastx/maps/test_blastx_project_settings.html 783s [Saturday July 27 02:34:32 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_blastx/maps. 784s Processing project 'test_orfs' 784s Processing project 'test_orfs' using configuration 'project_settings.conf' 785s [Saturday July 27 02:34:34 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_orfs/project_settings.conf. 785s [Saturday July 27 02:34:34 2024] [Notice] Creating CGView XML files. 786s Creating XML for feature sets on the outside of the backbone circle. 786s Feature sets written first are drawn closest to the backbone circle. 786s Creating XML for ORFs that are in reading frame +1. 786s Creating XML for ORFs that are in reading frame +2. 786s Creating XML for ORFs that are in reading frame +3. 786s Creating XML for feature sets on the inside of the backbone circle. 786s Feature sets written first are drawn closest to the backbone circle. 786s Creating XML for ORFs that are in reading frame -1. 786s Creating XML for ORFs that are in reading frame -2. 786s Creating XML for ORFs that are in reading frame -3. 786s CGView XML file complete. 786s The recommended CGView command is: 786s ---------------------------------- 786s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_orfs/maps/cgview_xml/test_orfs_project_settings.conf_medium.xml -o map.png 786s Success! 786s The following key-values were used: 786s ----------------------------------- 786s arrowheadLength=6 786s average=T 786s atColorNeg=rgb(51,51,51) 786s atColorPos=rgb(51,51,51) 786s at_content=F 786s atSkewColorNeg=rgb(0,0,153) 786s atSkewColorPos=rgb(153,153,0) 786s at_skew=F 786s backboneColor=rgb(102,102,102) 786s backboneRadius=1000 786s backboneThickness=8 786s backgroundColor=white 786s blast_divider_ruler=F 786s blastRulerColor=rgb(255,165,0) 786s borderColor=black 786s combined_orfs=F 786s details=T 786s draw_divider_rings=T 786s featureOpacity=0.5 786s featureOpacityOther=0.5 786s featureSlotSpacing=6 786s featureThickness=30 786s featureThicknessPlot=570.00 786s feature_labels=F 786s gcColorNeg=rgb(0,0,0) 786s gcColorPos=rgb(0,0,0) 786s gc_content=F 786s gcSkewColorNeg=rgb(153,0,153) 786s gcSkewColorPos=rgb(0,153,0) 786s gc_skew=F 786s gene_decoration=arrow 786s gene_labels=F 786s global_label=true 786s height=3000 786s hit_labels=F 786s labelFontSize=15 786s labelPlacementQuality=good 786s labelLineLength=200 786s labelLineThickness=4 786s legend=T 786s legendFontSize=20 786s orf_labels=T 786s maxLabelLength=20 786s maxLegendLength=30 786s maxTitleLength=50 786s minimumFeatureLength=0.2 786s moveInnerLabelsToOuter=false 786s orfColor=rgb(204,0,0) 786s orfs=T 786s orf_size=19 786s otherColor=rgb(51,51,51) 786s parse_reading_frame=F 786s proteinColor=rgb(0,0,153) 786s reading_frames=F 786s rRNAColor=rgb(153,0,153) 786s rulerFontColor=rgb(0,0,0) 786s rulerFontSize=30 786s rulerPadding=40 786s scale=T 786s scale_blast=T 786s show_sequence_features=T 786s show_queries=F 786s startColor=rgb(153,0,153) 786s starts=atg 786s step=1 786s stopColor=rgb(204,0,0) 786s stops=taa|tag|tga 786s title= 786s titleFontSize=80 786s tickColor=rgb(0,51,0) 786s tickLength=15 786s tickThickness=6 786s tick_density=0.166666666666667 786s tRNAColor=rgb(153,0,0) 786s useInnerLabels=true 786s use_opacity=F 786s width=3000 786s window=50 786s ----------------------------------- 786s [Saturday July 27 02:34:35 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_orfs/maps/cgview_xml. 786s [Saturday July 27 02:34:35 2024] [Notice] Creating CGView maps. 789s Parsing XML input. 792s Drawing features.............. 792s Positioning and drawing 41 labels.......................... 792s 0 labels were removed. 792s Drawing tick marks. 792s Drawing legends. 792s The map has been drawn. 792s Writing picture to /var/tmp/cct/test_output/test_orfs/maps/test_orfs_project_settings.png 793s Writing HTML to /var/tmp/cct/test_output/test_orfs/maps/test_orfs_project_settings.html 793s [Saturday July 27 02:34:42 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_orfs/maps. 793s Processing project 'test_plots' 793s Processing project 'test_plots' using configuration 'project_settings.conf' 793s [Saturday July 27 02:34:42 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_plots/project_settings.conf. 793s [Saturday July 27 02:34:42 2024] [Notice] Creating CGView XML files. 794s Creating XML for feature sets on the outside of the backbone circle. 794s Feature sets written first are drawn closest to the backbone circle. 794s Creating XML for ORFs that are in reading frame +1. 794s Creating XML for ORFs that are in reading frame +2. 794s Creating XML for ORFs that are in reading frame +3. 794s Creating XML for feature sets on the inside of the backbone circle. 794s Feature sets written first are drawn closest to the backbone circle. 794s Creating XML for ORFs that are in reading frame -1. 794s Creating XML for ORFs that are in reading frame -2. 794s Creating XML for ORFs that are in reading frame -3. 794s Creating XML for GC content information. 794s Plotting GC content using a window size of 50 and a step of 1. 794s The maximum GC content value is 1.0000. 794s The minimum GC content value is 0.0000. 794s The average GC content value is 0.6000. 794s GC content will be scaled based on the maximum and minimum values. 794s GC content will be plotted as the deviation from the average value. 794s Creating XML for GC skew information. 794s Plotting GC skew using a window size of 50 and a step of 1. 794s The maximum GC skew value is 1.0000. 794s The minimum GC skew value is -1.0000. 794s The average GC skew value is -0.3333. 794s GC skew will be scaled based on the maximum and minimum values. 794s GC skew will be plotted as the deviation from the average value. 794s CGView XML file complete. 794s The recommended CGView command is: 794s ---------------------------------- 794s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_plots/maps/cgview_xml/test_plots_project_settings.conf_medium.xml -o map.png 794s Success! 794s The following key-values were used: 794s ----------------------------------- 794s arrowheadLength=6 794s average=T 794s atColorNeg=rgb(51,51,51) 794s atColorPos=rgb(51,51,51) 794s at_content=F 794s atSkewColorNeg=rgb(0,0,153) 794s atSkewColorPos=rgb(153,153,0) 794s at_skew=F 794s backboneColor=rgb(102,102,102) 794s backboneRadius=1000 794s backboneThickness=8 794s backgroundColor=white 794s blast_divider_ruler=F 794s blastRulerColor=rgb(255,165,0) 794s borderColor=black 794s combined_orfs=F 794s details=T 794s draw_divider_rings=T 794s featureOpacity=0.5 794s featureOpacityOther=0.5 794s featureSlotSpacing=6 794s featureThickness=30 794s featureThicknessPlot=186.00 794s feature_labels=F 794s gcColorNeg=rgb(0,0,0) 794s gcColorPos=rgb(0,0,0) 794s gc_content=T 794s gcSkewColorNeg=rgb(153,0,153) 794s gcSkewColorPos=rgb(0,153,0) 794s gc_skew=T 794s gene_decoration=arrow 794s gene_labels=F 794s global_label=true 794s height=3000 794s hit_labels=F 794s labelFontSize=15 794s labelPlacementQuality=good 794s labelLineLength=200 794s labelLineThickness=4 794s legend=T 794s legendFontSize=20 794s orf_labels=F 794s maxLabelLength=20 794s maxLegendLength=30 794s maxTitleLength=50 794s minimumFeatureLength=0.2 794s moveInnerLabelsToOuter=false 794s orfColor=rgb(204,0,0) 794s orfs=T 794s orf_size=25 794s otherColor=rgb(51,51,51) 794s parse_reading_frame=F 794s proteinColor=rgb(0,0,153) 794s reading_frames=F 794s rRNAColor=rgb(153,0,153) 794s rulerFontColor=rgb(0,0,0) 794s rulerFontSize=30 794s rulerPadding=40 794s scale=T 794s scale_blast=T 794s show_sequence_features=T 794s show_queries=F 794s startColor=rgb(153,0,153) 794s starts=ttg|ctg|att|atc|ata|atg|gtg 794s step=1 794s stopColor=rgb(204,0,0) 794s stops=taa|tag|tga 794s title= 794s titleFontSize=80 794s tickColor=rgb(0,51,0) 794s tickLength=15 794s tickThickness=6 794s tick_density=0.166666666666667 794s tRNAColor=rgb(153,0,0) 794s useInnerLabels=true 794s use_opacity=F 794s width=3000 794s window=50 794s ----------------------------------- 794s [Saturday July 27 02:34:43 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_plots/maps/cgview_xml. 794s [Saturday July 27 02:34:43 2024] [Notice] Creating CGView maps. 795s Parsing XML input. 802s Drawing features.................. 802s Positioning and drawing 0 labels.......................... 802s 0 labels were removed. 802s Drawing tick marks. 803s Drawing legends. 804s The map has been drawn. 804s Writing picture to /var/tmp/cct/test_output/test_plots/maps/test_plots_project_settings.png 805s Writing HTML to /var/tmp/cct/test_output/test_plots/maps/test_plots_project_settings.html 806s [Saturday July 27 02:34:54 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_plots/maps. 807s Processing project 'test_tblastn' 808s Processing project 'test_tblastn' using configuration 'project_settings.conf' 809s [Saturday July 27 02:34:57 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_tblastn/project_settings.conf. 809s [Saturday July 27 02:34:58 2024] [Notice] Extracting ORF translations from reference genome sequence in /var/tmp/cct/test_output/test_tblastn/reference_genome for BLAST searches. 809s Extracting ORFs in reading frame 1 on strand 1. 809s Extracting ORFs in reading frame 2 on strand 1. 809s Extracting ORFs in reading frame 3 on strand 1. 809s Extracting ORFs in reading frame 1 on strand -1. 809s Extracting ORFs in reading frame 2 on strand -1. 809s Extracting ORFs in reading frame 3 on strand -1. 809s A total of 338 records were written to /var/tmp/cct/test_output/test_tblastn/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs. 809s [Saturday July 27 02:34:58 2024] [Notice] Reference genome ORF translations have been written to /var/tmp/cct/test_output/test_tblastn/reference_genome/orfs. 809s [Saturday July 27 02:34:58 2024] [Notice] Splitting the comparison genome sequences in /var/tmp/cct/test_output/test_tblastn/comparison_genomes for BLAST searches. 809s [Saturday July 27 02:34:58 2024] [Notice] Comparison genome sequences have been split and written to /var/tmp/cct/test_output/test_tblastn/comparison_genomes/split. 809s [Saturday July 27 02:34:58 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_tblastn/comparison_genomes/split. 812s [Saturday July 27 02:35:01 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_tblastn/blast/blast_db. 812s [Saturday July 27 02:35:01 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_tblastn/reference_genome/orfs and databases in /var/tmp/cct/test_output/test_tblastn/blast/blast_db. 812s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 812s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 813s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 813s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 813s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 813s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 814s Writing HSP to file. 814s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 814s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 814s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 814s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 815s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 815s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 815s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 815s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 815s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 816s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 816s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 817s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 817s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 817s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 817s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 817s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 818s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 818s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 818s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 818s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 818s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 818s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 818s Writing HSP to file. 818s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 819s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 819s Writing HSP to file. 819s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 819s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 819s Writing HSP to file. 819s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 819s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 819s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 819s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 820s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 820s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 820s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 820s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 820s Writing HSP to file. 820s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 820s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 820s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 820s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 820s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 821s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 821s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 821s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 821s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 821s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 821s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 821s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 821s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 821s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 822s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 822s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 822s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 822s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 822s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 822s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 822s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 823s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 823s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 823s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 823s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 823s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 824s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 824s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 824s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 824s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 824s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 824s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 824s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 824s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 825s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 825s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 825s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 826s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 826s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 826s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 826s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 826s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 826s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 826s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 826s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 827s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 827s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 827s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 827s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 827s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 827s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 827s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 827s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 827s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 828s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 828s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 828s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 828s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 828s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 828s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 828s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 828s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 828s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 829s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 829s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 829s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 829s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 829s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 829s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 829s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 829s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 829s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 829s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 830s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 830s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 830s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 830s Writing HSP to file. 830s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 830s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 830s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 830s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 830s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 830s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 830s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 831s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 831s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 831s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 831s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 831s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 831s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 832s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 832s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 832s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 832s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 832s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 832s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 833s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 833s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 833s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 833s Writing HSP to file. 833s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 834s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 834s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 834s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 834s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 835s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 835s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 835s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 835s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 835s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 836s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 836s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 836s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 836s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 836s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 837s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 837s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 837s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 838s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 838s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 838s Writing HSP to file. 838s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 838s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 838s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 839s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 839s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 839s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 840s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 840s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 840s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 841s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 841s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 842s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 842s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 842s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 843s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 843s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 843s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 843s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 843s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 843s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 844s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 844s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 844s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 844s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 844s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 844s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 844s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 844s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 844s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 845s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 845s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 845s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 845s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 845s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 845s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 845s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 845s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 845s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 845s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 846s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 846s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 846s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 846s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 846s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 846s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 846s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 846s Writing HSP to file. 846s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 846s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 846s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 847s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 847s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 847s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 847s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 847s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 847s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 847s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 847s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 848s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 848s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 848s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 848s Writing HSP to file. 848s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 848s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 848s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 848s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 848s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 848s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 848s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 848s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 848s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 849s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 849s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 849s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 849s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 849s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 849s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 849s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 849s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 849s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 849s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 849s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 849s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 850s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 850s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 850s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 850s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 850s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 850s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 850s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 850s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 850s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 850s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 851s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 851s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 851s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 851s Writing HSP to file. 851s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 851s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 851s Writing HSP to file. 851s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 851s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 851s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 851s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 851s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 852s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 852s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 852s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 852s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 852s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 852s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 852s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 852s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 852s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 852s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 853s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 853s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 853s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 853s Writing HSP to file. 853s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 853s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 853s Writing HSP to file. 853s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 853s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 853s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 854s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 854s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 854s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 854s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 854s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 854s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 854s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 854s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 854s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 854s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 855s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 855s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 855s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 855s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 855s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 855s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 855s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 855s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 855s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 856s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 856s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 856s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 856s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 856s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 856s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 856s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 857s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 857s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 857s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 857s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 857s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 857s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 857s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 857s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 857s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 857s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 858s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 858s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 858s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 858s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 858s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 858s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 858s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 858s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 858s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 858s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 859s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 859s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 859s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 859s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 859s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 859s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 859s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 859s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 860s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 860s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 861s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 862s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 862s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 863s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 863s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 863s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 863s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 863s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 863s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 863s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 864s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 864s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 864s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 864s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 864s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 864s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 864s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 864s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 864s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 864s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 865s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 865s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 865s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 865s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 865s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 865s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 865s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 865s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 865s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 865s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 865s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 865s Writing HSP to file. 865s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 866s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 866s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 866s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 866s Writing HSP to file. 866s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 866s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 866s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 866s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 866s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 866s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 866s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 866s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 866s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 867s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 867s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 867s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 867s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 867s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 867s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 867s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 867s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 868s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 868s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 868s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 868s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 868s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 868s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 868s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 868s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 868s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 868s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 868s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 868s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 869s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 869s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 869s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 869s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 869s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 869s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 869s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 869s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 869s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 869s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 869s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 869s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 870s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 870s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 870s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 870s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 870s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 870s Writing HSP to file. 870s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 870s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 870s Writing HSP to file. 870s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 870s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 871s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 871s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 871s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 871s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 871s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 871s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 871s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 871s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 871s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 871s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 871s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 872s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 872s Writing HSP to file. 872s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 872s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 872s Writing HSP to file. 872s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 872s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 872s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 872s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 872s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 872s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 872s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 872s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 872s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 873s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 873s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 873s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 873s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 873s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 873s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 873s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 873s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 873s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 873s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 873s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 873s Writing HSP to file. 873s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 874s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 874s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 874s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 874s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 874s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 874s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 874s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 874s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 874s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 874s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 874s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 874s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 875s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 875s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 875s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 875s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 875s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 875s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 875s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 875s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 875s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 875s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 875s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 875s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 876s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 876s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 876s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 876s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 876s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 876s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 876s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 876s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 876s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 876s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 876s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 876s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 877s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 877s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 877s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 877s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 877s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 877s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 877s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 877s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 877s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 877s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 877s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 877s Writing HSP to file. 877s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 878s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 878s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 878s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 878s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 878s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 878s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 878s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 878s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 878s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 878s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 878s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 878s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 878s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 879s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 879s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 879s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 879s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 879s Writing HSP to file. 879s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 879s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 879s Writing HSP to file. 879s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 879s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 879s Writing HSP to file. 879s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 880s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 880s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 880s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 880s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 880s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 880s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 880s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 880s Writing HSP to file. 880s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 880s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 880s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 881s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 881s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 881s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 881s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 881s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 881s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 881s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 881s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 881s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 881s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 882s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 882s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 882s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 882s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 882s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 882s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 883s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 883s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 883s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 883s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 883s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 883s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 883s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 883s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 883s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 883s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 884s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 884s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 884s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 884s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 884s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 884s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 884s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 884s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 884s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 884s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 885s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 885s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 885s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 885s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 886s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 886s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 886s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 886s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 887s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 887s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 888s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 888s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 889s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 889s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 889s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 889s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 890s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 890s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 890s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 891s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 891s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 891s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 892s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 892s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 893s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 893s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 893s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 893s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 894s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 895s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 895s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 895s Writing HSP to file. 895s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 895s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 895s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 896s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 896s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 896s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 896s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 896s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 897s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 897s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 897s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 897s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 897s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 897s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 897s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 898s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 898s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 898s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 898s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 898s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 898s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 899s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 899s Writing HSP to file. 899s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 899s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 899s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 899s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 899s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 899s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 899s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 899s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 899s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 900s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 900s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 900s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 900s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 900s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 900s Writing HSP to file. 900s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 900s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 900s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 900s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 900s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 900s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 900s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 901s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 901s Writing HSP to file. 901s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 901s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 901s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 901s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 901s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 901s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 901s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 901s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 902s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 902s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 902s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 902s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 902s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 902s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 902s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 902s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 902s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 902s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 902s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 903s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 903s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 903s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 903s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 903s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 903s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 903s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 903s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 903s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 903s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 904s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 904s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 904s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 904s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf.fasta_split_DNA_tblastn to view the BLAST results. 904s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 904s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 904s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 904s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 904s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 904s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 904s Writing HSP to file. 904s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 905s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 905s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 905s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 905s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 905s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 905s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 905s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 905s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 905s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 906s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 906s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 906s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 906s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 906s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 906s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 906s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 906s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 906s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 906s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 906s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 907s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 907s Writing HSP to file. 907s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 907s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 907s Writing HSP to file. 907s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 907s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 907s Writing HSP to file. 907s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 907s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 907s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 907s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 907s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 907s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 908s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 908s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 908s Writing HSP to file. 908s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 908s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 908s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 908s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 908s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 908s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 908s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 909s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 909s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 909s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 909s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 909s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 909s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 909s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 909s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 909s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 909s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 909s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 909s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 910s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 910s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 910s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 910s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 910s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 910s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 910s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 910s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 910s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 910s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 911s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 911s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 911s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 911s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 911s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 911s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 911s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 911s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 912s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 912s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 912s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 912s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 912s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 912s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 912s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 912s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 913s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 913s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 913s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 913s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 913s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 913s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 913s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 913s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 914s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 914s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 914s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 914s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 914s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 914s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 915s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 915s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 915s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 915s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 916s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 916s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 916s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 916s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 916s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 916s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 916s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 916s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 917s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 917s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 917s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 917s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 917s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 918s Writing HSP to file. 918s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 918s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 918s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 918s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 918s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 918s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 918s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 919s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 919s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 919s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 919s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 919s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 919s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 919s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 920s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 920s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 920s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 920s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 920s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 920s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 920s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 921s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 921s Writing HSP to file. 921s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 921s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 921s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 921s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 921s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 922s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 922s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 922s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 922s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 922s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 922s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 923s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 923s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 923s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 923s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 923s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 923s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 923s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 923s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 924s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 924s Writing HSP to file. 924s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 924s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 924s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 924s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 924s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 924s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 925s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 925s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 925s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 925s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 925s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 925s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 925s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 926s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 926s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 926s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 926s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 926s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 926s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 927s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 927s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 927s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 927s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 927s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 928s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 928s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 928s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 928s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 929s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 929s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 929s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 930s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 930s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 930s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 931s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 931s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 931s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 932s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 932s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 933s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 933s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 933s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 933s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 934s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 934s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 934s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 935s Writing HSP to file. 935s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 935s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 935s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 936s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 936s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 936s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 937s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 937s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 937s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 938s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 938s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 938s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 938s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 939s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 939s Writing HSP to file. 939s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 939s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 939s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 939s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 939s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 939s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 940s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 940s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 940s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 940s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 940s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 941s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 941s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 941s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 941s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 942s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 942s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 942s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 942s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 942s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 942s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 943s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 943s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 943s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 943s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 944s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 944s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 944s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 944s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 944s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 945s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 945s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 945s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 945s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 945s Writing HSP to file. 945s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 945s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 946s Writing HSP to file. 946s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 946s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 946s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 946s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 947s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 947s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 947s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 947s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 947s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 948s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 948s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 948s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 948s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 949s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 949s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 949s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 949s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 950s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 950s Writing HSP to file. 950s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 951s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 951s Writing HSP to file. 951s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 951s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 951s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 952s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 952s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 952s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 952s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 952s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 952s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 953s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 953s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 953s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 953s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 954s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 954s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 955s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 955s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 955s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 955s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 955s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 955s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 956s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 956s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 956s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 956s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 957s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 957s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 957s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 957s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 958s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 958s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 958s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 958s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 959s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 959s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 959s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 959s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 959s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 959s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 960s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 960s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 960s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 960s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 960s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 960s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 960s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 961s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 961s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 961s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 961s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 961s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 961s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 961s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 962s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 962s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 962s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 962s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 962s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 962s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 963s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 963s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 963s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 963s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 963s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 963s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 964s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 964s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 964s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 964s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 964s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 964s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 964s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 964s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 965s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 965s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 965s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 965s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 965s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 965s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 965s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 965s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 966s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 966s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 966s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 966s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 966s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 966s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 966s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 966s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 966s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 967s Writing HSP to file. 967s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 967s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 967s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 967s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 967s Writing HSP to file. 967s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 967s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 967s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 967s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 967s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 968s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 968s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 968s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 968s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 968s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 968s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 968s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 968s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 969s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 969s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 969s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 969s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 969s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 970s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 970s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 970s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 971s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 971s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 971s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 972s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 972s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 972s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 973s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 973s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 973s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 973s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 974s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 974s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 975s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 975s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 975s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 975s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 975s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 975s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 976s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 976s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 976s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 976s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 976s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 976s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 977s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 977s Writing HSP to file. 977s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 977s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 977s Writing HSP to file. 977s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 978s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 978s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 978s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 978s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 978s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 978s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 979s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 979s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 979s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 979s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 980s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 980s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 980s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 980s Writing HSP to file. 980s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 981s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 981s Writing HSP to file. 981s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 981s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 981s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 981s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 981s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 981s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 982s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 982s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 982s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 982s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 982s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 982s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 982s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 983s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 983s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 983s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 983s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 983s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 983s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 983s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 984s Writing HSP to file. 984s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 984s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 984s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 984s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 984s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 984s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 984s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 985s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 985s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 985s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 985s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 986s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 986s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 986s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 986s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 986s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 986s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 986s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 986s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 986s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 986s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 987s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 987s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 987s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 987s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 987s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 987s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 987s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 987s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 987s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 987s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 988s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 988s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 988s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 988s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 988s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 988s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 988s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 988s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 988s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 988s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 989s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 989s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 989s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 989s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 989s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 989s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 989s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 989s Writing HSP to file. 989s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 989s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 989s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 989s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 989s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 989s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 989s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 990s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 990s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 990s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 990s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 990s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 990s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 991s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 991s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 991s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 991s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 991s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 991s Writing HSP to file. 991s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 991s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 991s Writing HSP to file. 991s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 992s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 992s Writing HSP to file. 992s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 992s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 992s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 992s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 992s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 992s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 992s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 992s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 992s Writing HSP to file. 992s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 993s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 993s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 993s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 993s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 993s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 993s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 993s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 993s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 994s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 994s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 994s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 994s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 994s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 994s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 994s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 994s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 995s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 995s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 995s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 995s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 995s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 995s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 995s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 995s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 996s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 996s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 996s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 996s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 996s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 996s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 996s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 996s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 996s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 996s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 996s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 996s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 997s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 997s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 997s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 997s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 997s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 997s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 997s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 997s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 997s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 997s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 997s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 998s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 998s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 998s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 998s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 998s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 998s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 998s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 998s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 998s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 998s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 999s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 999s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 999s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 999s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 999s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 999s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 999s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 999s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 999s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 1000s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1000s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 1000s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1000s Writing HSP to file. 1000s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 1000s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1000s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 1000s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1000s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 1000s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1000s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 1001s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1001s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 1001s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1001s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 1001s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1001s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 1001s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1001s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 1001s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1001s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 1002s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1002s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 1002s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1002s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 1002s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1002s Writing HSP to file. 1002s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 1002s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1002s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 1003s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1003s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 1003s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1003s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 1003s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1003s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 1004s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1004s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 1004s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1004s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 1004s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1004s Writing HSP to file. 1004s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 1004s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1005s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 1005s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1005s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 1005s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1005s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 1005s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1005s Writing HSP to file. 1005s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 1006s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1006s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 1006s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1006s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 1006s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1006s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 1006s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1006s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 1007s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1007s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 1007s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1007s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 1007s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1007s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 1007s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1007s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 1007s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1007s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 1008s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1008s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 1008s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1008s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 1008s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1008s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 1008s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1008s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 1008s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1008s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 1009s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1009s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 1009s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1009s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastn to view the BLAST results. 1009s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 1009s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1009s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 1009s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1010s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 1010s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1010s Writing HSP to file. 1010s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 1010s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1010s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 1010s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1010s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 1010s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1010s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 1010s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1010s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 1011s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1011s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 1011s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1011s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 1011s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1011s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 1011s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1011s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 1011s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1011s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 1012s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1012s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 1012s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1012s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 1013s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1013s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 1014s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1014s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 1014s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1014s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 1015s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1015s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 1016s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1016s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 1016s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1017s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 1017s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1018s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 1018s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1018s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 1018s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1018s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 1019s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1019s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 1019s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1019s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 1019s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1020s Writing HSP to file. 1020s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 1020s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1020s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 1020s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1020s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 1021s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1021s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 1021s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1022s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 1022s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1022s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 1022s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1023s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 1023s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1023s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 1023s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1023s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 1024s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1024s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 1024s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1024s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 1025s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1025s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 1025s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1025s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 1026s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1026s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 1026s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1026s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 1027s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1027s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 1027s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1028s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 1028s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1028s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 1028s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1029s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 1029s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1029s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 1030s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1030s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 1031s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1031s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 1031s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1032s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 1033s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1034s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 1034s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1035s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 1035s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1036s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 1036s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1036s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 1036s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1037s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 1037s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1037s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 1038s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1038s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 1038s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1038s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 1039s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1039s Writing HSP to file. 1039s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 1039s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1039s Writing HSP to file. 1039s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 1039s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1039s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 1040s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1040s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 1040s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1040s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 1040s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1041s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 1041s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1041s Writing HSP to file. 1041s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 1041s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1041s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 1042s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1042s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 1042s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1042s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 1042s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1043s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 1043s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1043s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 1043s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1044s Writing HSP to file. 1044s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 1044s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1044s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 1044s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1044s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 1045s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1045s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 1045s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1045s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 1045s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1045s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 1046s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1046s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 1046s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1046s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 1046s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1046s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 1047s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1047s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 1047s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1047s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 1047s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1047s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 1048s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1048s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 1048s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1048s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 1048s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1048s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 1049s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1049s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 1049s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1049s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 1049s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1050s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 1050s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1050s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 1050s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1050s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 1050s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1051s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 1051s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1051s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 1051s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1051s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 1052s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1052s Writing HSP to file. 1052s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 1052s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1052s Writing HSP to file. 1052s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 1053s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1053s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 1053s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1053s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 1054s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1054s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 1054s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1054s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 1054s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1054s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 1054s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1054s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 1054s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1054s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 1055s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1055s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 1055s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1055s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 1055s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1055s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 1055s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1055s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 1055s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1055s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 1055s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1056s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 1056s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1056s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 1056s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1056s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 1056s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1056s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 1056s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1056s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 1057s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1057s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 1057s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1057s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 1057s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1057s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 1058s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1058s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 1058s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1058s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 1059s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1059s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 1059s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1059s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 1059s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1060s Writing HSP to file. 1060s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 1060s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1060s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 1060s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1061s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 1061s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1062s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 1062s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1062s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 1062s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1063s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 1063s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1063s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 1063s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1063s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 1063s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1063s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 1063s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1063s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 1064s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1064s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 1064s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1064s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 1064s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1064s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 1064s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1064s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 1064s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1064s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 1065s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1065s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 1065s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1065s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 1065s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1065s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 1066s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1066s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 1066s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1066s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 1067s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1067s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 1067s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1067s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 1067s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1067s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 1067s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1067s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 1067s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1068s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 1068s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1068s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 1068s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1068s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 1068s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1068s Writing HSP to file. 1068s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 1069s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1069s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 1069s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1069s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 1069s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1069s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 1069s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1069s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 1069s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1069s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 1070s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1070s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 1070s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1070s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 1070s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1070s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 1070s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1070s Writing HSP to file. 1070s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 1070s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1070s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 1070s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1070s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 1071s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1071s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 1071s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1071s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 1071s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1071s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 1071s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1071s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 1072s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1072s Writing HSP to file. 1072s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 1072s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1072s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 1072s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1073s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 1073s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1073s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 1073s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1073s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 1073s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1073s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 1073s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1074s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 1074s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1074s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 1074s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1074s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 1074s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1075s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 1075s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1075s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 1075s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1075s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 1075s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1075s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 1076s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1076s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 1076s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1076s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 1076s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1076s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 1077s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1077s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 1077s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1077s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 1077s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1077s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 1077s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1078s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 1078s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1078s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 1078s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1078s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 1079s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1079s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 1079s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1079s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 1079s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1079s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 1079s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1079s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 1080s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1080s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 1080s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1080s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 1080s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1080s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 1080s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1081s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 1081s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1081s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 1081s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1081s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 1081s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1081s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 1082s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1082s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 1082s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1082s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 1082s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1082s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 1082s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1083s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 1083s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1083s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 1083s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1083s Writing HSP to file. 1083s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 1083s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1084s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 1084s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1084s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 1084s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1084s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 1084s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1085s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 1085s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1085s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 1085s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1085s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 1085s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1086s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 1086s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1086s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 1086s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1086s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 1086s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1086s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 1086s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1087s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 1087s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1087s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 1088s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1088s Writing HSP to file. 1088s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 1088s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1088s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 1088s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1088s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 1088s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1088s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 1089s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1089s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 1089s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1090s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 1090s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1090s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 1091s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1091s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 1091s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1092s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 1092s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1092s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 1093s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1093s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 1093s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1093s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 1093s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1093s Writing HSP to file. 1093s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 1094s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1094s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 1094s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1094s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 1094s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1094s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 1095s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1095s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 1095s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1095s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 1095s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1095s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 1096s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1096s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 1096s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1096s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 1096s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1096s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 1096s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1096s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 1096s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1097s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 1097s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1098s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 1098s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1098s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 1098s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1099s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 1099s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1099s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 1100s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1100s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 1100s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1100s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 1101s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1101s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 1101s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1101s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 1101s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1101s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 1101s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1102s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 1102s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1102s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 1103s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1103s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 1103s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1103s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 1103s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1103s Writing HSP to file. 1103s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 1103s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1103s Writing HSP to file. 1103s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 1104s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1104s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 1104s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1104s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 1104s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1105s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 1105s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1105s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 1105s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1105s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 1105s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1105s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 1106s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1106s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 1106s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1106s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 1106s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1106s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 1106s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1106s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 1107s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1107s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 1107s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1107s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 1107s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1107s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 1107s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1107s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 1107s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1107s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 1107s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1107s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 1107s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1107s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 1108s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1108s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 1108s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1108s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 1108s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1108s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 1108s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1108s Writing HSP to file. 1108s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 1108s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1108s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 1109s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1109s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 1109s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1109s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 1109s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1109s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 1109s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1109s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 1109s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1109s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 1109s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1109s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 1110s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1110s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 1110s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1110s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 1110s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1110s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 1110s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1110s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 1110s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1110s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 1111s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1111s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 1111s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1111s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 1111s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1111s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 1111s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1111s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 1112s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1112s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 1112s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1112s Writing HSP to file. 1112s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 1113s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1113s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 1113s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1113s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 1113s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1113s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 1113s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1114s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 1114s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1114s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 1114s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1114s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 1114s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1114s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 1114s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1114s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 1114s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1114s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 1115s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1115s Writing HSP to file. 1115s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 1115s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1115s Writing HSP to file. 1115s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 1115s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1115s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 1115s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1115s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 1115s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1115s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 1115s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1115s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 1116s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1116s Writing HSP to file. 1116s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 1116s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1116s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 1116s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1116s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 1116s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1116s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 1116s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1116s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 1117s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1117s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 1117s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1117s Writing HSP to file. 1117s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 1117s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1117s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 1117s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1117s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 1117s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1117s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 1118s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1118s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 1118s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1118s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 1118s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1118s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 1118s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1118s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 1118s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1119s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 1119s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1119s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 1119s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1119s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 1119s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1119s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 1119s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1119s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 1119s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1119s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 1119s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1119s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 1120s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1120s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 1120s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1120s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 1120s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1120s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 1120s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1120s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 1120s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1120s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 1120s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1120s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 1120s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1120s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 1121s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1121s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 1121s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1121s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 1121s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1121s Writing HSP to file. 1121s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 1121s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1121s Writing HSP to file. 1121s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 1121s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1121s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 1122s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1122s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf.fasta_split_DNA_tblastn to view the BLAST results. 1122s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 1122s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1122s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 1122s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1122s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 1122s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1122s Writing HSP to file. 1122s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 1123s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1123s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 1123s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1123s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 1123s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1123s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 1124s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1124s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 1124s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1124s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 1124s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1124s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 1124s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1124s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 1124s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1124s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 1125s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1125s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 1125s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1125s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 1125s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1125s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 1125s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1125s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 1125s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1125s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 1126s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1126s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 1126s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1126s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 1126s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1126s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 1126s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1126s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 1126s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1126s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 1127s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1127s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 1127s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1127s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 1127s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1127s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 1127s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1127s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 1127s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1127s Writing HSP to file. 1127s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 1128s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1128s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 1128s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1128s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 1128s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1128s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 1128s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1128s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 1128s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1128s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 1128s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1128s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 1129s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1129s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 1129s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1129s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 1129s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1129s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 1129s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1129s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 1129s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1130s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 1130s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1130s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 1130s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1130s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 1130s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1130s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 1130s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1130s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 1131s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1131s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 1131s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1131s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 1131s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1131s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 1131s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1131s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 1132s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1132s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 1132s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1132s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 1132s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1132s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 1132s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1132s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 1132s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1132s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 1132s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1133s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 1133s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1133s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 1133s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1133s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 1133s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1133s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 1133s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1133s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 1134s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1134s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 1134s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1134s Writing HSP to file. 1134s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 1134s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1134s Writing HSP to file. 1134s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 1134s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1135s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 1135s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1135s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 1135s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1135s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 1136s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1136s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 1136s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1136s Writing HSP to file. 1136s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 1137s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1137s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 1137s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1137s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 1137s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1138s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 1138s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1138s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 1138s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1138s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 1138s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1138s Writing HSP to file. 1138s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 1139s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1139s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 1139s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1139s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 1139s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1139s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 1139s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1140s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 1140s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1140s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 1140s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1140s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 1140s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1140s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 1141s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1141s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 1141s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1141s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 1141s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1141s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 1142s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1142s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 1142s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1142s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 1143s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1143s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 1143s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1143s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 1143s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1144s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 1144s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1144s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 1144s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1144s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 1144s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1144s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 1145s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1145s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 1145s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1145s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 1145s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1146s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 1147s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1147s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 1147s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1147s Writing HSP to file. 1147s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 1147s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1148s Writing HSP to file. 1148s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 1148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1148s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 1148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1148s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 1148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1148s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 1149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1149s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 1149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1149s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 1149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1149s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 1149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1149s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 1150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1150s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 1150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1150s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 1150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1150s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 1150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1150s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 1150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1150s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 1150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1150s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 1151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1151s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 1151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1151s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 1151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1151s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 1151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1151s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 1151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1151s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 1151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1151s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 1152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1152s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 1152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1152s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 1152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1152s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 1152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1152s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 1152s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 1152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1153s Writing HSP to file. 1153s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 1153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1153s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 1153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1153s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 1153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1153s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 1153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1153s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 1153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1153s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 1153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1153s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 1154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1154s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 1154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1154s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 1154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1155s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 1155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1155s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 1155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1155s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 1155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1155s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 1155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1155s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 1156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1156s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 1156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1156s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 1156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1156s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 1156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1156s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 1157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1157s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 1157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1157s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 1157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1157s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 1157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1157s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 1158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1158s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 1158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1158s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 1158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1158s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 1158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1158s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 1158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1158s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 1159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1159s Writing HSP to file. 1159s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 1159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1159s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 1159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1159s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 1159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1159s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 1160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1160s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 1160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1160s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 1160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1160s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 1160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1160s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 1160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1160s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 1160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1160s Writing HSP to file. 1160s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 1161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1161s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 1161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1161s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 1161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1161s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 1161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1161s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 1161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1161s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 1161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1161s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 1162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1162s Writing HSP to file. 1162s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 1162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1162s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 1162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1162s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 1162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1162s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 1162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1162s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 1163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1163s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 1163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1163s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 1163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1163s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 1163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1163s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 1163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1163s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 1164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1164s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 1164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1164s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 1164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1164s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 1164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1165s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 1165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1165s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 1165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1165s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 1165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1165s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 1166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1166s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 1166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1166s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 1166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1166s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 1167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1167s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 1167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1167s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 1167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1167s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 1167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1167s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 1167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1167s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 1167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1167s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 1168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1168s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 1168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1168s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 1168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1168s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 1168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1168s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 1168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1168s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 1168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1168s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 1169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1169s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 1169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1169s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 1169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1169s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 1169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1169s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 1169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1169s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 1169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1170s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 1170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1170s Writing HSP to file. 1170s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 1170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1170s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 1170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1170s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 1170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1170s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 1171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1171s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 1171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1171s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 1171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1171s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 1171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1171s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 1171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1171s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 1171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1171s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 1172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1172s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 1172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1172s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 1172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1172s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 1173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1173s Writing HSP to file. 1173s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 1173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1173s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 1173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1173s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 1173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1173s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 1173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1174s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 1174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1174s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 1174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1174s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 1174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1174s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 1174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1174s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 1174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1174s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 1175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1175s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 1175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1175s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 1175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1175s Writing HSP to file. 1175s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 1175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1175s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 1175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1175s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 1176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1176s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 1176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1176s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 1176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1176s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 1176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1176s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 1176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1176s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 1177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1177s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 1177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1177s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 1177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1177s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 1177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1177s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 1177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1177s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 1178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1178s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 1178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1178s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 1178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1178s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 1178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1178s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 1178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1178s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 1178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1178s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 1179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1179s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 1179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1179s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 1179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1179s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 1179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1179s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 1179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1179s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 1179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1179s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 1180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1180s Writing HSP to file. 1180s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 1180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1180s Writing HSP to file. 1180s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 1180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1180s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 1180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1180s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 1180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1180s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 1181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1181s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 1181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1181s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 1181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1181s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 1181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1181s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 1181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1181s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 1182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1182s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 1182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1182s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 1182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1182s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 1182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1182s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 1183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1183s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 1183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1183s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 1183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1183s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 1183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1183s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 1183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1183s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 1184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1184s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 1184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1184s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 1184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1184s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 1184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1184s Writing HSP to file. 1184s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 1184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1184s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 1185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1185s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 1185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1185s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 1185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1185s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 1185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1185s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 1185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1185s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 1185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1185s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 1186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1186s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 1186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1186s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 1186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1186s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 1186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1186s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 1186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1186s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 1187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1187s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 1187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1187s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 1187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1187s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 1187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1187s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 1187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1187s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 1187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1187s Writing HSP to file. 1187s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 1188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1188s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 1188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1188s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 1188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1188s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 1188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1188s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 1188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1188s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 1188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1189s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 1189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1189s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 1189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1189s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 1189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1189s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 1189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1189s Writing HSP to file. 1189s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 1189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1189s Writing HSP to file. 1189s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 1190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1190s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 1190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1190s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 1190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1190s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 1190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1190s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 1190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1190s Writing HSP to file. 1190s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 1191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1191s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 1191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1191s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 1191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1191s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 1191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1191s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 1191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1191s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 1192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1192s Writing HSP to file. 1192s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 1192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1192s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 1192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1192s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 1192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1192s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 1192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1192s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 1193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1193s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 1193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1193s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 1193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1193s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 1193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1193s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 1193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1193s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 1193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1193s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 1194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1194s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 1194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1194s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 1194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1194s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 1194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1194s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 1194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1194s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 1194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1194s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 1195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1195s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 1195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1195s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 1195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1195s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 1195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1195s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 1195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1195s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 1196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1196s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 1196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1196s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 1196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1196s Writing HSP to file. 1196s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 1196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1196s Writing HSP to file. 1196s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 1196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1196s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 1196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1197s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastn to view the BLAST results. 1197s [Saturday July 27 02:41:25 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local. 1197s [Saturday July 27 02:41:26 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_tblastn/reference_genome. 1197s [Saturday July 27 02:41:26 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_tblastn/features. 1197s [Saturday July 27 02:41:26 2024] [Notice] Creating CGView XML files. 1197s [Saturday July 27 02:41:26 2024] [Notice] The following BLAST results will be drawn, from outside to center: 1197s [Saturday July 27 02:41:26 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf.fasta_split_DNA_tblastn 1197s [Saturday July 27 02:41:26 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastn 1197s [Saturday July 27 02:41:26 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf.fasta_split_DNA_tblastn 1197s [Saturday July 27 02:41:26 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastn 1197s Creating XML for feature sets on the outside of the backbone circle. 1197s Feature sets written first are drawn closest to the backbone circle. 1197s Creating XML for ORFs that are in reading frame +1. 1197s Creating XML for ORFs that are in reading frame +2. 1197s Creating XML for ORFs that are in reading frame +3. 1197s Creating XML for feature sets on the inside of the backbone circle. 1197s Feature sets written first are drawn closest to the backbone circle. 1197s Creating XML for ORFs that are in reading frame -1. 1197s Creating XML for ORFs that are in reading frame -2. 1197s Creating XML for ORFs that are in reading frame -3. 1197s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf.fasta_split_DNA_tblastn. 1197s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastn. 1197s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf.fasta_split_DNA_tblastn. 1197s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastn. 1197s Creating XML for GC content information. 1197s Plotting GC content using a window size of 500 and a step of 1. 1197s The maximum GC content value is 0.5768. 1197s The minimum GC content value is 0.4311. 1197s The average GC content value is 0.5051. 1197s GC content will be scaled based on the maximum and minimum values. 1197s GC content will be plotted as the deviation from the average value. 1197s Creating XML for GC skew information. 1197s Plotting GC skew using a window size of 500 and a step of 1. 1197s The maximum GC skew value is 0.1587. 1197s The minimum GC skew value is -0.2263. 1197s The average GC skew value is -0.0036. 1197s GC skew will be scaled based on the maximum and minimum values. 1197s GC skew will be plotted as the deviation from the average value. 1197s CGView XML file complete. 1197s The recommended CGView command is: 1197s ---------------------------------- 1197s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_tblastn/maps/cgview_xml/test_tblastn_project_settings.conf_medium.xml -o map.png 1197s Success! 1197s The following key-values were used: 1197s ----------------------------------- 1197s arrowheadLength=6 1197s average=T 1197s atColorNeg=rgb(51,51,51) 1197s atColorPos=rgb(51,51,51) 1197s at_content=F 1197s atSkewColorNeg=rgb(0,0,153) 1197s atSkewColorPos=rgb(153,153,0) 1197s at_skew=F 1197s backboneColor=rgb(102,102,102) 1197s backboneRadius=1000 1197s backboneThickness=8 1197s backgroundColor=white 1197s blast_divider_ruler=F 1197s blastRulerColor=rgb(255,165,0) 1197s borderColor=black 1197s combined_orfs=F 1197s details=T 1197s draw_divider_rings=T 1197s featureOpacity=0.5 1197s featureOpacityOther=0.5 1197s featureSlotSpacing=6 1197s featureThickness=9.86 1197s featureThicknessPlot=59.14 1197s feature_labels=F 1197s gcColorNeg=rgb(0,0,0) 1197s gcColorPos=rgb(0,0,0) 1197s gc_content=T 1197s gcSkewColorNeg=rgb(153,0,153) 1197s gcSkewColorPos=rgb(0,153,0) 1197s gc_skew=T 1197s gene_decoration=arrow 1197s gene_labels=F 1197s global_label=true 1197s height=3000 1197s hit_labels=F 1197s labelFontSize=15 1197s labelPlacementQuality=good 1197s labelLineLength=200 1197s labelLineThickness=4 1197s legend=T 1197s legendFontSize=20 1197s orf_labels=F 1197s maxLabelLength=20 1197s maxLegendLength=30 1197s maxTitleLength=50 1197s minimumFeatureLength=0.2 1197s moveInnerLabelsToOuter=false 1197s orfColor=rgb(204,0,0) 1197s orfs=T 1197s orf_size=25 1197s otherColor=rgb(51,51,51) 1197s parse_reading_frame=T 1197s proteinColor=rgb(0,0,153) 1197s reading_frames=F 1197s rRNAColor=rgb(153,0,153) 1197s rulerFontColor=rgb(0,0,0) 1197s rulerFontSize=30 1197s rulerPadding=40 1197s scale=T 1197s scale_blast=T 1197s show_sequence_features=T 1197s show_queries=T 1197s startColor=rgb(153,0,153) 1197s starts=ttg|ctg|att|atc|ata|atg|gtg 1197s step=1 1197s stopColor=rgb(204,0,0) 1197s stops=taa|tag|tga 1197s title= 1197s titleFontSize=80 1197s tickColor=rgb(0,51,0) 1197s tickLength=15 1197s tickThickness=6 1197s tick_density=0.166666666666667 1197s tRNAColor=rgb(153,0,0) 1197s useInnerLabels=true 1197s use_opacity=F 1197s width=3000 1197s window=500 1197s ----------------------------------- 1197s [Saturday July 27 02:41:26 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_tblastn/maps/cgview_xml. 1197s [Saturday July 27 02:41:26 2024] [Notice] Creating CGView maps. 1198s Parsing XML input. 1210s Drawing features.................................................................. 1210s Positioning and drawing 0 labels.......................... 1210s 0 labels were removed. 1210s Drawing tick marks. 1211s Drawing legends. 1211s The map has been drawn. 1211s Writing picture to /var/tmp/cct/test_output/test_tblastn/maps/test_tblastn_project_settings.png 1212s Writing HTML to /var/tmp/cct/test_output/test_tblastn/maps/test_tblastn_project_settings.html 1212s [Saturday July 27 02:41:41 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_tblastn/maps. 1213s Processing project 'test_tblastx' 1213s Processing project 'test_tblastx' using configuration 'project_settings.conf' 1213s [Saturday July 27 02:41:42 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_tblastx/project_settings.conf. 1213s [Saturday July 27 02:41:42 2024] [Notice] Splitting the reference genome sequence in /var/tmp/cct/test_output/test_tblastx/reference_genome for BLAST searches. 1213s [Saturday July 27 02:41:42 2024] [Notice] Reference genome sequence has been split and written to /var/tmp/cct/test_output/test_tblastx/reference_genome/split. 1213s [Saturday July 27 02:41:42 2024] [Notice] Splitting the comparison genome sequences in /var/tmp/cct/test_output/test_tblastx/comparison_genomes for BLAST searches. 1213s [Saturday July 27 02:41:42 2024] [Notice] Comparison genome sequences have been split and written to /var/tmp/cct/test_output/test_tblastx/comparison_genomes/split. 1213s [Saturday July 27 02:41:42 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_tblastx/comparison_genomes/split. 1214s [Saturday July 27 02:41:43 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_tblastx/blast/blast_db. 1214s [Saturday July 27 02:41:43 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_tblastx/reference_genome/split and databases in /var/tmp/cct/test_output/test_tblastx/blast/blast_db. 1215s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 1215s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Writing HSP to file. 1215s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_tblastx to view the BLAST results. 1215s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 1215s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastx to view the BLAST results. 1216s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 1216s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_tblastx to view the BLAST results. 1216s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 1216s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Writing HSP to file. 1216s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastx to view the BLAST results. 1216s [Saturday July 27 02:41:45 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local. 1216s [Saturday July 27 02:41:45 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_tblastx/reference_genome. 1216s [Saturday July 27 02:41:45 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_tblastx/features. 1216s [Saturday July 27 02:41:45 2024] [Notice] Creating CGView XML files. 1216s [Saturday July 27 02:41:45 2024] [Notice] The following BLAST results will be drawn, from outside to center: 1216s [Saturday July 27 02:41:45 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_tblastx 1216s [Saturday July 27 02:41:45 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastx 1216s [Saturday July 27 02:41:45 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_tblastx 1216s [Saturday July 27 02:41:45 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastx 1217s Creating XML for feature sets on the outside of the backbone circle. 1217s Feature sets written first are drawn closest to the backbone circle. 1217s Creating XML for ORFs that are in reading frame +1. 1217s Creating XML for ORFs that are in reading frame +2. 1217s Creating XML for ORFs that are in reading frame +3. 1217s Creating XML for feature sets on the inside of the backbone circle. 1217s Feature sets written first are drawn closest to the backbone circle. 1217s Creating XML for ORFs that are in reading frame -1. 1217s Creating XML for ORFs that are in reading frame -2. 1217s Creating XML for ORFs that are in reading frame -3. 1217s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_tblastx. 1217s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastx. 1217s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_tblastx. 1217s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastx. 1217s Creating XML for GC content information. 1217s Plotting GC content using a window size of 500 and a step of 1. 1217s The maximum GC content value is 0.5768. 1217s The minimum GC content value is 0.4311. 1217s The average GC content value is 0.5051. 1217s GC content will be scaled based on the maximum and minimum values. 1217s GC content will be plotted as the deviation from the average value. 1217s Creating XML for GC skew information. 1217s Plotting GC skew using a window size of 500 and a step of 1. 1217s The maximum GC skew value is 0.1587. 1217s The minimum GC skew value is -0.2263. 1217s The average GC skew value is -0.0036. 1217s GC skew will be scaled based on the maximum and minimum values. 1217s GC skew will be plotted as the deviation from the average value. 1217s CGView XML file complete. 1217s The recommended CGView command is: 1217s ---------------------------------- 1217s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_tblastx/maps/cgview_xml/test_tblastx_project_settings.conf_medium.xml -o map.png 1217s Success! 1217s The following key-values were used: 1217s ----------------------------------- 1217s arrowheadLength=6 1217s average=T 1217s atColorNeg=rgb(51,51,51) 1217s atColorPos=rgb(51,51,51) 1217s at_content=F 1217s atSkewColorNeg=rgb(0,0,153) 1217s atSkewColorPos=rgb(153,153,0) 1217s at_skew=F 1217s backboneColor=rgb(102,102,102) 1217s backboneRadius=1000 1217s backboneThickness=8 1217s backgroundColor=white 1217s blast_divider_ruler=F 1217s blastRulerColor=rgb(255,165,0) 1217s borderColor=black 1217s combined_orfs=F 1217s details=T 1217s draw_divider_rings=T 1217s featureOpacity=0.5 1217s featureOpacityOther=0.5 1217s featureSlotSpacing=6 1217s featureThickness=9.86 1217s featureThicknessPlot=59.14 1217s feature_labels=F 1217s gcColorNeg=rgb(0,0,0) 1217s gcColorPos=rgb(0,0,0) 1217s gc_content=T 1217s gcSkewColorNeg=rgb(153,0,153) 1217s gcSkewColorPos=rgb(0,153,0) 1217s gc_skew=T 1217s gene_decoration=arrow 1217s gene_labels=F 1217s global_label=true 1217s height=3000 1217s hit_labels=F 1217s labelFontSize=15 1217s labelPlacementQuality=good 1217s labelLineLength=200 1217s labelLineThickness=4 1217s legend=T 1217s legendFontSize=20 1217s orf_labels=F 1217s maxLabelLength=20 1217s maxLegendLength=30 1217s maxTitleLength=50 1217s minimumFeatureLength=0.2 1217s moveInnerLabelsToOuter=false 1217s orfColor=rgb(204,0,0) 1217s orfs=T 1217s orf_size=25 1217s otherColor=rgb(51,51,51) 1217s parse_reading_frame=T 1217s proteinColor=rgb(0,0,153) 1217s reading_frames=F 1217s rRNAColor=rgb(153,0,153) 1217s rulerFontColor=rgb(0,0,0) 1217s rulerFontSize=30 1217s rulerPadding=40 1217s scale=T 1217s scale_blast=T 1217s show_sequence_features=T 1217s show_queries=T 1217s startColor=rgb(153,0,153) 1217s starts=ttg|ctg|att|atc|ata|atg|gtg 1217s step=1 1217s stopColor=rgb(204,0,0) 1217s stops=taa|tag|tga 1217s title= 1217s titleFontSize=80 1217s tickColor=rgb(0,51,0) 1217s tickLength=15 1217s tickThickness=6 1217s tick_density=0.166666666666667 1217s tRNAColor=rgb(153,0,0) 1217s useInnerLabels=true 1217s use_opacity=F 1217s width=3000 1217s window=500 1217s ----------------------------------- 1217s [Saturday July 27 02:41:46 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_tblastx/maps/cgview_xml. 1217s [Saturday July 27 02:41:46 2024] [Notice] Creating CGView maps. 1217s Parsing XML input. 1221s Drawing features.................................................................. 1221s Positioning and drawing 0 labels.......................... 1221s 0 labels were removed. 1221s Drawing tick marks. 1221s Drawing legends. 1221s The map has been drawn. 1221s Writing picture to /var/tmp/cct/test_output/test_tblastx/maps/test_tblastx_project_settings.png 1222s Writing HTML to /var/tmp/cct/test_output/test_tblastx/maps/test_tblastx_project_settings.html 1222s [Saturday July 27 02:41:51 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_tblastx/maps. 1222s Test project output written to '/var/tmp/cct/test_output' 1224s autopkgtest [02:41:53]: test run-unit-test: -----------------------] 1228s autopkgtest [02:41:57]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1228s run-unit-test PASS 1232s autopkgtest [02:42:01]: @@@@@@@@@@@@@@@@@@@@ summary 1232s run-unit-test PASS