0s autopkgtest [16:02:52]: starting date and time: 2024-07-26 16:02:52+0000 0s autopkgtest [16:02:52]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [16:02:52]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.doabp30a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:xgboost --apt-upgrade xgboost --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=xgboost/2.1.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-1.secgroup --name adt-oracular-arm64-xgboost-20240726-160252-juju-7f2275-prod-proposed-migration-environment-3-b6a13c2d-c59f-4bfd-bd75-72eeb2006182 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 103s autopkgtest [16:04:35]: testbed dpkg architecture: arm64 103s autopkgtest [16:04:35]: testbed apt version: 2.9.6 103s autopkgtest [16:04:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 104s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 105s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B] 105s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 105s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [436 kB] 105s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB] 105s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [88.6 kB] 105s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2116 B] 105s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 105s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 105s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [482 kB] 105s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8752 B] 105s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8744 B] 105s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B] 107s Fetched 1261 kB in 1s (954 kB/s) 107s Reading package lists... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Calculating upgrade... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 120s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 120s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 120s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 122s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Calculating upgrade... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s autopkgtest [16:05:00]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 128s autopkgtest [16:05:00]: @@@@@@@@@@@@@@@@@@@@ apt-source xgboost 132s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe xgboost 2.1.0-1 (dsc) [2256 B] 132s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe xgboost 2.1.0-1 (tar) [2125 kB] 132s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe xgboost 2.1.0-1 (diff) [22.4 kB] 132s gpgv: Signature made Mon Jul 15 06:59:46 2024 UTC 132s gpgv: using RSA key 638BC75EC1E5C589067E35DE62645EB35F686A8A 132s gpgv: issuer "lumin@debian.org" 132s gpgv: Can't check signature: No public key 132s dpkg-source: warning: cannot verify inline signature for ./xgboost_2.1.0-1.dsc: no acceptable signature found 132s autopkgtest [16:05:04]: testing package xgboost version 2.1.0-1 132s autopkgtest [16:05:04]: build not needed 133s autopkgtest [16:05:05]: test command1: preparing testbed 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s Starting pkgProblemResolver with broken count: 0 135s Starting 2 pkgProblemResolver with broken count: 0 135s Done 136s The following additional packages will be installed: 136s libblas3 libgfortran5 liblapack3 liblbfgsb0 libxgboost-dev libxgboost0 136s python3-decorator python3-joblib python3-numpy python3-scipy python3-sklearn 136s python3-sklearn-lib python3-threadpoolctl python3-xgboost 136s Suggested packages: 136s gcc gfortran python-numpy-doc python3-dev python3-pytest python-scipy-doc 136s python3-dap python-sklearn-doc ipython3 136s Recommended packages: 136s python3-pytest python3-simplejson python3-psutil g++ | c++-compiler 136s python3-pil python3-matplotlib 136s The following NEW packages will be installed: 136s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 136s libxgboost-dev libxgboost0 python3-decorator python3-joblib python3-numpy 136s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 136s python3-xgboost 136s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. 136s Need to get 30.6 MB/30.6 MB of archives. 136s After this operation, 136 MB of additional disk space will be used. 136s Get:1 /tmp/autopkgtest.ghEJ4a/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B] 136s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 136s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-5ubuntu1 [438 kB] 137s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 137s Get:5 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 137s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 libxgboost0 arm64 2.1.0-1 [1968 kB] 138s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 libxgboost-dev arm64 2.1.0-1 [74.2 kB] 138s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 138s Get:9 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-joblib all 1.3.2-2 [208 kB] 138s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB] 138s Get:11 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.12.0-2 [15.9 MB] 140s Get:12 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 140s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-3 [3651 kB] 140s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 140s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 python3-xgboost arm64 2.1.0-1 [116 kB] 141s Fetched 30.6 MB in 4s (7845 kB/s) 141s Selecting previously unselected package libblas3:arm64. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78607 files and directories currently installed.) 142s Preparing to unpack .../00-libblas3_3.12.0-3build1_arm64.deb ... 142s Unpacking libblas3:arm64 (3.12.0-3build1) ... 142s Selecting previously unselected package libgfortran5:arm64. 142s Preparing to unpack .../01-libgfortran5_14.1.0-5ubuntu1_arm64.deb ... 142s Unpacking libgfortran5:arm64 (14.1.0-5ubuntu1) ... 142s Selecting previously unselected package liblapack3:arm64. 142s Preparing to unpack .../02-liblapack3_3.12.0-3build1_arm64.deb ... 142s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 142s Selecting previously unselected package liblbfgsb0:arm64. 143s Preparing to unpack .../03-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 143s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 143s Selecting previously unselected package libxgboost0. 143s Preparing to unpack .../04-libxgboost0_2.1.0-1_arm64.deb ... 143s Unpacking libxgboost0 (2.1.0-1) ... 143s Selecting previously unselected package libxgboost-dev. 143s Preparing to unpack .../05-libxgboost-dev_2.1.0-1_arm64.deb ... 143s Unpacking libxgboost-dev (2.1.0-1) ... 143s Selecting previously unselected package python3-decorator. 143s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 143s Unpacking python3-decorator (5.1.1-5) ... 143s Selecting previously unselected package python3-joblib. 144s Preparing to unpack .../07-python3-joblib_1.3.2-2_all.deb ... 144s Unpacking python3-joblib (1.3.2-2) ... 144s Selecting previously unselected package python3-numpy. 144s Preparing to unpack .../08-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ... 144s Unpacking python3-numpy (1:1.26.4+ds-10) ... 144s Selecting previously unselected package python3-scipy. 144s Preparing to unpack .../09-python3-scipy_1.12.0-2_arm64.deb ... 144s Unpacking python3-scipy (1.12.0-2) ... 144s Selecting previously unselected package python3-threadpoolctl. 145s Preparing to unpack .../10-python3-threadpoolctl_3.1.0-1_all.deb ... 145s Unpacking python3-threadpoolctl (3.1.0-1) ... 145s Selecting previously unselected package python3-sklearn-lib:arm64. 145s Preparing to unpack .../11-python3-sklearn-lib_1.4.2+dfsg-3_arm64.deb ... 145s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-3) ... 145s Selecting previously unselected package python3-sklearn. 145s Preparing to unpack .../12-python3-sklearn_1.4.2+dfsg-3_all.deb ... 145s Unpacking python3-sklearn (1.4.2+dfsg-3) ... 145s Selecting previously unselected package python3-xgboost. 145s Preparing to unpack .../13-python3-xgboost_2.1.0-1_arm64.deb ... 145s Unpacking python3-xgboost (2.1.0-1) ... 145s Selecting previously unselected package autopkgtest-satdep. 145s Preparing to unpack .../14-1-autopkgtest-satdep.deb ... 145s Unpacking autopkgtest-satdep (0) ... 145s Setting up python3-joblib (1.3.2-2) ... 145s Setting up python3-threadpoolctl (3.1.0-1) ... 146s Setting up python3-decorator (5.1.1-5) ... 146s Setting up libblas3:arm64 (3.12.0-3build1) ... 146s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 146s Setting up libgfortran5:arm64 (14.1.0-5ubuntu1) ... 146s Setting up libxgboost0 (2.1.0-1) ... 146s Setting up liblapack3:arm64 (3.12.0-3build1) ... 146s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 146s Setting up libxgboost-dev (2.1.0-1) ... 146s Setting up python3-numpy (1:1.26.4+ds-10) ... 148s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 148s Setting up python3-scipy (1.12.0-2) ... 151s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-3) ... 151s Setting up python3-xgboost (2.1.0-1) ... 152s Setting up python3-sklearn (1.4.2+dfsg-3) ... 154s Setting up autopkgtest-satdep (0) ... 154s Processing triggers for man-db (2.12.1-2) ... 155s Processing triggers for libc-bin (2.39-0ubuntu9) ... 160s (Reading database ... 82063 files and directories currently installed.) 160s Removing autopkgtest-satdep (0) ... 162s autopkgtest [16:05:34]: test command1: python3 demo/guide-python/basic_walkthrough.py 162s autopkgtest [16:05:34]: test command1: [----------------------- 164s Traceback (most recent call last): 164s File "/tmp/autopkgtest.ghEJ4a/build.UmI/src/demo/guide-python/basic_walkthrough.py", line 18, in 164s import xgboost as xgb 164s File "/usr/lib/python3/dist-packages/xgboost/__init__.py", line 6, in 164s from . import tracker # noqa 164s ^^^^^^^^^^^^^^^^^^^^^ 164s File "/usr/lib/python3/dist-packages/xgboost/tracker.py", line 9, in 164s from .core import _LIB, _check_call, make_jcargs 164s File "/usr/lib/python3/dist-packages/xgboost/core.py", line 269, in 164s _LIB = _load_lib() 164s ^^^^^^^^^^^ 164s File "/usr/lib/python3/dist-packages/xgboost/core.py", line 222, in _load_lib 164s raise XGBoostError( 164s xgboost.core.XGBoostError: 164s XGBoost Library (libxgboost.so) could not be loaded. 164s Likely causes: 164s * OpenMP runtime is not installed 164s - vcomp140.dll or libgomp-1.dll for Windows 164s - libomp.dylib for Mac OSX 164s - libgomp.so for Linux and other UNIX-like OSes 164s Mac OSX users: Run `brew install libomp` to install OpenMP runtime. 164s 164s * You are running 32-bit Python on a 64-bit OS 164s 164s Error message(s): ['/usr/lib/python3/dist-packages/xgboost/lib/libxgboost.so: undefined symbol: _ZN4dmlc6ParserIjfE6CreateEPKcjjS3_'] 164s 164s autopkgtest [16:05:36]: test command1: -----------------------] 165s autopkgtest [16:05:37]: test command1: - - - - - - - - - - results - - - - - - - - - - 165s command1 FAIL non-zero exit status 1 165s autopkgtest [16:05:37]: @@@@@@@@@@@@@@@@@@@@ summary 165s command1 FAIL non-zero exit status 1 189s nova [W] Skipping flock in bos03-arm64 189s Creating nova instance adt-oracular-arm64-xgboost-20240726-160252-juju-7f2275-prod-proposed-migration-environment-3-b6a13c2d-c59f-4bfd-bd75-72eeb2006182 from image adt/ubuntu-oracular-arm64-server-20240726.img (UUID 33caccb7-bc3b-4ecc-9e17-59d67995dc9e)...