0s autopkgtest [04:59:39]: starting date and time: 2024-06-29 04:59:39+0000 0s autopkgtest [04:59:39]: git checkout: 85adf9a1 setup-testbed: prevent /tmp from getting a tmpfs mount 0s autopkgtest [04:59:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rc8_jzgn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade unifrac --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-1.secgroup --name adt-oracular-arm64-unifrac-20240629-045939-juju-7f2275-prod-proposed-migration-environment-2-1c7fdc80-cdc3-4cff-ad47-e04b37a32ec1 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 108s autopkgtest [05:01:27]: testbed dpkg architecture: arm64 108s autopkgtest [05:01:27]: testbed apt version: 2.9.5 108s autopkgtest [05:01:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 108s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 109s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 109s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [54.4 kB] 109s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 109s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [383 kB] 109s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [103 kB] 109s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [32.5 kB] 109s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [381 kB] 109s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [7928 B] 110s Fetched 1081 kB in 1s (937 kB/s) 110s Reading package lists... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s Calculating upgrade... 114s The following packages will be upgraded: 114s libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 115s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 9207 kB of archives. 115s After this operation, 31.7 kB disk space will be freed. 115s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-devtools arm64 2.39-3.1ubuntu2 [27.7 kB] 115s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6-dev arm64 2.39-3.1ubuntu2 [1592 kB] 115s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-dev-bin arm64 2.39-3.1ubuntu2 [19.7 kB] 115s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6 arm64 2.39-3.1ubuntu2 [2769 kB] 115s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-bin arm64 2.39-3.1ubuntu2 [579 kB] 115s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 locales all 2.39-3.1ubuntu2 [4220 kB] 117s Preconfiguring packages ... 117s Fetched 9207 kB in 1s (9580 kB/s) 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78326 files and directories currently installed.) 118s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu2_arm64.deb ... 118s Unpacking libc-devtools (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 119s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu2_arm64.deb ... 119s Unpacking libc6-dev:arm64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 119s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu2_arm64.deb ... 119s Unpacking libc-dev-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 120s Preparing to unpack .../libc6_2.39-3.1ubuntu2_arm64.deb ... 121s Unpacking libc6:arm64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 121s Setting up libc6:arm64 (2.39-3.1ubuntu2) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78326 files and directories currently installed.) 123s Preparing to unpack .../libc-bin_2.39-3.1ubuntu2_arm64.deb ... 123s Unpacking libc-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 123s Setting up libc-bin (2.39-3.1ubuntu2) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78326 files and directories currently installed.) 123s Preparing to unpack .../locales_2.39-3.1ubuntu2_all.deb ... 123s Unpacking locales (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 124s Setting up locales (2.39-3.1ubuntu2) ... 125s Generating locales (this might take a while)... 130s en_US.UTF-8... done 130s Generation complete. 131s Setting up libc-dev-bin (2.39-3.1ubuntu2) ... 131s Setting up libc-devtools (2.39-3.1ubuntu2) ... 131s Setting up libc6-dev:arm64 (2.39-3.1ubuntu2) ... 131s Processing triggers for man-db (2.12.1-2) ... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 135s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 135s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 135s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 138s Reading package lists... 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Calculating upgrade... 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s autopkgtest [05:02:05]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 146s autopkgtest [05:02:05]: @@@@@@@@@@@@@@@@@@@@ apt-source unifrac 149s Get:1 http://ftpmaster.internal/ubuntu oracular/universe unifrac 1.3-2build1 (dsc) [2259 B] 149s Get:2 http://ftpmaster.internal/ubuntu oracular/universe unifrac 1.3-2build1 (tar) [65.9 kB] 149s Get:3 http://ftpmaster.internal/ubuntu oracular/universe unifrac 1.3-2build1 (diff) [7492 B] 150s gpgv: Signature made Wed Apr 10 09:52:51 2024 UTC 150s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 150s gpgv: Can't check signature: No public key 150s dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-2build1.dsc: no acceptable signature found 151s autopkgtest [05:02:10]: testing package unifrac version 1.3-2build1 151s autopkgtest [05:02:10]: build not needed 152s autopkgtest [05:02:11]: test run-unit-test: preparing testbed 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Starting pkgProblemResolver with broken count: 0 154s Starting 2 pkgProblemResolver with broken count: 0 154s Done 155s The following additional packages will be installed: 155s blt build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 155s cpp-aarch64-linux-gnu fonts-lyx g++ g++-13 g++-13-aarch64-linux-gnu 155s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 155s gcc-aarch64-linux-gnu libaec0 libasan8 libatomic1 libblas3 libcc1-0 155s libgcc-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 155s libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-hl-100t64 libhwasan0 155s libimagequant0 libisl23 libitm1 libjs-jquery libjs-jquery-ui liblapack3 155s liblapacke liblbfgsb0 liblcms2-2 liblsan0 liblzf1 libmpc3 libopenjp2-7 155s libqhull-r8.0 libraqm0 libssu0 libssw0 libstdc++-13-dev libsz2 libtcl8.6 155s libtk8.6 libtmglib3 libtsan2 libubsan1 libwebpdemux2 libwebpmux3 libxft2 155s libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 155s python3-appdirs python3-asttokens python3-biom-format python3-brotli 155s python3-click python3-colorama python3-contourpy python3-cycler 155s python3-dateutil python3-decorator python3-executing python3-fonttools 155s python3-fs python3-h5py python3-h5py-serial python3-hdmedians python3-iow 155s python3-ipython python3-jedi python3-kiwisolver python3-lxml python3-lz4 155s python3-matplotlib python3-matplotlib-inline python3-mpmath python3-natsort 155s python3-numpy python3-packaging python3-pandas python3-pandas-lib 155s python3-parso python3-pexpect python3-pil python3-pil.imagetk 155s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-scipy 155s python3-setuptools python3-skbio python3-stack-data python3-sympy python3-tk 155s python3-traitlets python3-typeshed python3-ufolib2 python3-unicodedata2 155s python3-unifrac python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 155s Suggested packages: 155s blt-demo cpp-doc gcc-13-locales cpp-13-doc gcc-13-doc gcc-multilib 155s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 155s gdb-aarch64-linux-gnu libjs-jquery-ui-docs liblcms2-utils libstdc++-13-doc 155s tcl8.6 tk8.6 python-biom-format-doc python-cycler-doc python-h5py-doc 155s python-ipython-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 155s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 155s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 155s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 155s python3-gmpy2 python-natsort-doc gfortran python-numpy-doc python3-dev 155s python3-pytest python-pandas-doc python3-statsmodels python-pexpect-doc 155s python-pil-doc python-scipy-doc python-setuptools-doc python-skbio-doc 155s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 155s Recommended packages: 155s javascript-common python3-bs4 python3-cssselect python3-html5lib 155s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 155s python3-tables python3-olefile isympy-common 155s The following NEW packages will be installed: 155s autopkgtest-satdep blt build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 155s cpp-aarch64-linux-gnu fonts-lyx g++ g++-13 g++-13-aarch64-linux-gnu 155s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 155s gcc-aarch64-linux-gnu libaec0 libasan8 libatomic1 libblas3 libcc1-0 155s libgcc-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 155s libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-hl-100t64 libhwasan0 155s libimagequant0 libisl23 libitm1 libjs-jquery libjs-jquery-ui liblapack3 155s liblapacke liblbfgsb0 liblcms2-2 liblsan0 liblzf1 libmpc3 libopenjp2-7 155s libqhull-r8.0 libraqm0 libssu0 libssw0 libstdc++-13-dev libsz2 libtcl8.6 155s libtk8.6 libtmglib3 libtsan2 libubsan1 libwebpdemux2 libwebpmux3 libxft2 155s libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 155s python3-appdirs python3-asttokens python3-biom-format python3-brotli 155s python3-click python3-colorama python3-contourpy python3-cycler 155s python3-dateutil python3-decorator python3-executing python3-fonttools 155s python3-fs python3-h5py python3-h5py-serial python3-hdmedians python3-iow 155s python3-ipython python3-jedi python3-kiwisolver python3-lxml python3-lz4 155s python3-matplotlib python3-matplotlib-inline python3-mpmath python3-natsort 155s python3-numpy python3-packaging python3-pandas python3-pandas-lib 155s python3-parso python3-pexpect python3-pil python3-pil.imagetk 155s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-scipy 155s python3-setuptools python3-skbio python3-stack-data python3-sympy python3-tk 155s python3-traitlets python3-typeshed python3-ufolib2 python3-unicodedata2 155s python3-unifrac python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 156s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 127 MB/127 MB of archives. 156s After this operation, 521 MB of additional disk space will be used. 156s Get:1 /tmp/autopkgtest.40p1Fa/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [728 B] 156s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 156s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 156s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 156s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 156s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 156s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 156s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 156s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 156s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 libisl23 arm64 0.26-3build1 [669 kB] 156s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libmpc3 arm64 1.3.1-1build1 [56.4 kB] 156s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [10.3 MB] 157s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-13 arm64 13.2.0-23ubuntu4 [1032 B] 157s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 157s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 157s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libcc1-0 arm64 14.1.0-1ubuntu1 [49.4 kB] 157s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB] 157s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libitm1 arm64 14.1.0-1ubuntu1 [27.9 kB] 157s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14.1.0-1ubuntu1 [11.4 kB] 157s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 libasan8 arm64 14.1.0-1ubuntu1 [2922 kB] 157s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 liblsan0 arm64 14.1.0-1ubuntu1 [1286 kB] 157s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 libtsan2 arm64 14.1.0-1ubuntu1 [2692 kB] 157s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 libubsan1 arm64 14.1.0-1ubuntu1 [1155 kB] 157s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 libhwasan0 arm64 14.1.0-1ubuntu1 [1604 kB] 157s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-13-dev arm64 13.2.0-23ubuntu4 [2470 kB] 157s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [20.1 MB] 158s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-13 arm64 13.2.0-23ubuntu4 [472 kB] 158s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 158s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 158s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++-13-dev arm64 13.2.0-23ubuntu4 [2379 kB] 158s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [11.7 MB] 158s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-13 arm64 13.2.0-23ubuntu4 [14.5 kB] 158s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 158s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 158s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 158s Get:36 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-lyx all 2.4.0-1 [171 kB] 158s Get:37 http://ftpmaster.internal/ubuntu oracular/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 158s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 158s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB] 158s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 158s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB] 158s Get:42 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 158s Get:43 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [1192 kB] 158s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [121 kB] 158s Get:45 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu4 [55.8 kB] 158s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 158s Get:47 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 158s Get:48 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 158s Get:49 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 158s Get:50 http://ftpmaster.internal/ubuntu oracular/main arm64 libtmglib3 arm64 3.12.0-3build1 [112 kB] 158s Get:51 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapacke arm64 3.12.0-3build1 [427 kB] 158s Get:52 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 158s Get:53 http://ftpmaster.internal/ubuntu oracular/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] 158s Get:54 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 158s Get:55 http://ftpmaster.internal/ubuntu oracular/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 158s Get:56 http://ftpmaster.internal/ubuntu oracular/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 158s Get:57 http://ftpmaster.internal/ubuntu oracular/universe arm64 libssu0 arm64 1.4-3build2 [147 kB] 158s Get:58 http://ftpmaster.internal/ubuntu oracular/universe arm64 libssw0 arm64 1.1-14build1 [21.4 kB] 158s Get:59 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 158s Get:60 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 158s Get:61 http://ftpmaster.internal/ubuntu oracular/main arm64 libxslt1.1 arm64 1.1.39-0exp1build1 [166 kB] 158s Get:62 http://ftpmaster.internal/ubuntu oracular/universe arm64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 158s Get:63 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-all arm64 3.12.3-0ubuntu1 [888 B] 158s Get:64 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 158s Get:65 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-asttokens all 2.4.1-1 [20.9 kB] 158s Get:66 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB] 159s Get:67 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu3 [888 kB] 159s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 159s Get:69 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 159s Get:70 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-click all 8.1.7-1 [79.1 kB] 159s Get:71 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 159s Get:72 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [4178 kB] 159s Get:73 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 159s Get:74 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 159s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.12.0-2 [15.9 MB] 159s Get:76 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB] 159s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] 159s Get:78 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-contourpy arm64 1.0.7-3 [163 kB] 159s Get:79 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 159s Get:80 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-executing all 2.0.1-0.1 [23.3 kB] 159s Get:81 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 159s Get:82 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 159s Get:83 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sympy all 1.12-8 [3966 kB] 160s Get:84 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 160s Get:85 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-lxml arm64 5.2.1-1 [1179 kB] 160s Get:86 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] 160s Get:87 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build1 [362 kB] 160s Get:88 http://ftpmaster.internal/ubuntu oracular/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 160s Get:89 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] 160s Get:90 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-hdmedians arm64 0.14.2-5.1build1 [116 kB] 160s Get:91 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-parso all 0.8.3-1 [67.2 kB] 160s Get:92 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 160s Get:93 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-jedi all 0.19.1+ds1-1 [693 kB] 160s Get:94 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-traitlets all 5.5.0-2 [85.0 kB] 160s Get:95 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 160s Get:96 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-ptyprocess all 0.7.0-5 [15.1 kB] 160s Get:97 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-pexpect all 4.9-2 [48.1 kB] 160s Get:98 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB] 160s Get:99 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-prompt-toolkit all 3.0.47-1 [256 kB] 160s Get:100 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pure-eval all 0.2.2-2 [11.1 kB] 160s Get:101 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-stack-data all 0.6.3-1 [22.0 kB] 160s Get:102 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 160s Get:103 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ipython all 8.20.0-1ubuntu1 [561 kB] 161s Get:104 http://ftpmaster.internal/ubuntu oracular/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB] 161s Get:105 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-pil arm64 10.3.0-2 [446 kB] 161s Get:106 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-tk arm64 3.12.3-0ubuntu1 [102 kB] 161s Get:107 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pil.imagetk arm64 10.3.0-2 [9268 B] 161s Get:108 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-kiwisolver arm64 1.4.5-1 [48.9 kB] 161s Get:109 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.0-1 [41.1 kB] 161s Get:110 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-matplotlib arm64 3.6.3-2ubuntu1 [5963 kB] 161s Get:111 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-natsort all 8.0.2-2 [33.8 kB] 161s Get:112 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-skbio arm64 0.5.9-4build1 [744 kB] 161s Get:113 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-iow arm64 1.0.6-5 [370 kB] 161s Get:114 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-unifrac arm64 1.3-2build1 [147 kB] 162s Fetched 127 MB in 6s (23.0 MB/s) 163s Selecting previously unselected package libtcl8.6:arm64. 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78326 files and directories currently installed.) 163s Preparing to unpack .../000-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ... 163s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 163s Selecting previously unselected package libxrender1:arm64. 163s Preparing to unpack .../001-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 163s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 163s Selecting previously unselected package libxft2:arm64. 163s Preparing to unpack .../002-libxft2_2.3.6-1build1_arm64.deb ... 163s Unpacking libxft2:arm64 (2.3.6-1build1) ... 163s Selecting previously unselected package x11-common. 164s Preparing to unpack .../003-x11-common_1%3a7.7+23ubuntu3_all.deb ... 164s Unpacking x11-common (1:7.7+23ubuntu3) ... 164s Selecting previously unselected package libxss1:arm64. 165s Preparing to unpack .../004-libxss1_1%3a1.2.3-1build3_arm64.deb ... 165s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 165s Selecting previously unselected package libtk8.6:arm64. 165s Preparing to unpack .../005-libtk8.6_8.6.14-1build1_arm64.deb ... 165s Unpacking libtk8.6:arm64 (8.6.14-1build1) ... 165s Selecting previously unselected package tk8.6-blt2.5. 166s Preparing to unpack .../006-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 166s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 166s Selecting previously unselected package blt. 166s Preparing to unpack .../007-blt_2.5.3+dfsg-7build1_arm64.deb ... 166s Unpacking blt (2.5.3+dfsg-7build1) ... 166s Selecting previously unselected package libisl23:arm64. 166s Preparing to unpack .../008-libisl23_0.26-3build1_arm64.deb ... 166s Unpacking libisl23:arm64 (0.26-3build1) ... 166s Selecting previously unselected package libmpc3:arm64. 166s Preparing to unpack .../009-libmpc3_1.3.1-1build1_arm64.deb ... 166s Unpacking libmpc3:arm64 (1.3.1-1build1) ... 166s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 167s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 167s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 167s Selecting previously unselected package cpp-13. 167s Preparing to unpack .../011-cpp-13_13.2.0-23ubuntu4_arm64.deb ... 167s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 168s Selecting previously unselected package cpp-aarch64-linux-gnu. 168s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 168s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 168s Selecting previously unselected package cpp. 168s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 168s Unpacking cpp (4:13.2.0-7ubuntu1) ... 168s Selecting previously unselected package libcc1-0:arm64. 168s Preparing to unpack .../014-libcc1-0_14.1.0-1ubuntu1_arm64.deb ... 168s Unpacking libcc1-0:arm64 (14.1.0-1ubuntu1) ... 169s Selecting previously unselected package libgomp1:arm64. 169s Preparing to unpack .../015-libgomp1_14.1.0-1ubuntu1_arm64.deb ... 169s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ... 169s Selecting previously unselected package libitm1:arm64. 169s Preparing to unpack .../016-libitm1_14.1.0-1ubuntu1_arm64.deb ... 169s Unpacking libitm1:arm64 (14.1.0-1ubuntu1) ... 169s Selecting previously unselected package libatomic1:arm64. 169s Preparing to unpack .../017-libatomic1_14.1.0-1ubuntu1_arm64.deb ... 169s Unpacking libatomic1:arm64 (14.1.0-1ubuntu1) ... 170s Selecting previously unselected package libasan8:arm64. 170s Preparing to unpack .../018-libasan8_14.1.0-1ubuntu1_arm64.deb ... 170s Unpacking libasan8:arm64 (14.1.0-1ubuntu1) ... 170s Selecting previously unselected package liblsan0:arm64. 170s Preparing to unpack .../019-liblsan0_14.1.0-1ubuntu1_arm64.deb ... 170s Unpacking liblsan0:arm64 (14.1.0-1ubuntu1) ... 170s Selecting previously unselected package libtsan2:arm64. 171s Preparing to unpack .../020-libtsan2_14.1.0-1ubuntu1_arm64.deb ... 171s Unpacking libtsan2:arm64 (14.1.0-1ubuntu1) ... 171s Selecting previously unselected package libubsan1:arm64. 171s Preparing to unpack .../021-libubsan1_14.1.0-1ubuntu1_arm64.deb ... 171s Unpacking libubsan1:arm64 (14.1.0-1ubuntu1) ... 171s Selecting previously unselected package libhwasan0:arm64. 171s Preparing to unpack .../022-libhwasan0_14.1.0-1ubuntu1_arm64.deb ... 171s Unpacking libhwasan0:arm64 (14.1.0-1ubuntu1) ... 171s Selecting previously unselected package libgcc-13-dev:arm64. 171s Preparing to unpack .../023-libgcc-13-dev_13.2.0-23ubuntu4_arm64.deb ... 171s Unpacking libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ... 171s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 171s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 171s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 172s Selecting previously unselected package gcc-13. 172s Preparing to unpack .../025-gcc-13_13.2.0-23ubuntu4_arm64.deb ... 172s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 172s Selecting previously unselected package gcc-aarch64-linux-gnu. 172s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 172s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package gcc. 172s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 172s Unpacking gcc (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package libstdc++-13-dev:arm64. 173s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-23ubuntu4_arm64.deb ... 173s Unpacking libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ... 173s Selecting previously unselected package g++-13-aarch64-linux-gnu. 173s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 173s Unpacking g++-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 173s Selecting previously unselected package g++-13. 173s Preparing to unpack .../030-g++-13_13.2.0-23ubuntu4_arm64.deb ... 173s Unpacking g++-13 (13.2.0-23ubuntu4) ... 173s Selecting previously unselected package g++-aarch64-linux-gnu. 173s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 173s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package g++. 173s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 173s Unpacking g++ (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package build-essential. 174s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 174s Unpacking build-essential (12.10ubuntu1) ... 174s Selecting previously unselected package fonts-lyx. 174s Preparing to unpack .../034-fonts-lyx_2.4.0-1_all.deb ... 174s Unpacking fonts-lyx (2.4.0-1) ... 174s Selecting previously unselected package libaec0:arm64. 174s Preparing to unpack .../035-libaec0_1.1.3-1_arm64.deb ... 174s Unpacking libaec0:arm64 (1.1.3-1) ... 174s Selecting previously unselected package libblas3:arm64. 174s Preparing to unpack .../036-libblas3_3.12.0-3build1_arm64.deb ... 174s Unpacking libblas3:arm64 (3.12.0-3build1) ... 174s Selecting previously unselected package libgfortran5:arm64. 174s Preparing to unpack .../037-libgfortran5_14.1.0-1ubuntu1_arm64.deb ... 174s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ... 174s Selecting previously unselected package libgraphite2-3:arm64. 174s Preparing to unpack .../038-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 174s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 174s Selecting previously unselected package libharfbuzz0b:arm64. 174s Preparing to unpack .../039-libharfbuzz0b_8.3.0-2build2_arm64.deb ... 174s Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ... 174s Selecting previously unselected package libsz2:arm64. 174s Preparing to unpack .../040-libsz2_1.1.3-1_arm64.deb ... 174s Unpacking libsz2:arm64 (1.1.3-1) ... 174s Selecting previously unselected package libhdf5-103-1t64:arm64. 174s Preparing to unpack .../041-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 174s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 174s Selecting previously unselected package libhdf5-cpp-103-1t64:arm64. 174s Preparing to unpack .../042-libhdf5-cpp-103-1t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 174s Unpacking libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 174s Selecting previously unselected package libhdf5-hl-100t64:arm64. 174s Preparing to unpack .../043-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 174s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 174s Selecting previously unselected package libimagequant0:arm64. 174s Preparing to unpack .../044-libimagequant0_2.18.0-1build1_arm64.deb ... 174s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 174s Selecting previously unselected package libjs-jquery. 175s Preparing to unpack .../045-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 175s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 175s Selecting previously unselected package libjs-jquery-ui. 175s Preparing to unpack .../046-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 175s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 175s Selecting previously unselected package liblapack3:arm64. 175s Preparing to unpack .../047-liblapack3_3.12.0-3build1_arm64.deb ... 175s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 175s Selecting previously unselected package libtmglib3:arm64. 175s Preparing to unpack .../048-libtmglib3_3.12.0-3build1_arm64.deb ... 175s Unpacking libtmglib3:arm64 (3.12.0-3build1) ... 175s Selecting previously unselected package liblapacke:arm64. 175s Preparing to unpack .../049-liblapacke_3.12.0-3build1_arm64.deb ... 175s Unpacking liblapacke:arm64 (3.12.0-3build1) ... 175s Selecting previously unselected package liblbfgsb0:arm64. 175s Preparing to unpack .../050-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 175s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 175s Selecting previously unselected package liblcms2-2:arm64. 175s Preparing to unpack .../051-liblcms2-2_2.14-2build1_arm64.deb ... 175s Unpacking liblcms2-2:arm64 (2.14-2build1) ... 175s Selecting previously unselected package liblzf1:arm64. 175s Preparing to unpack .../052-liblzf1_3.6-4_arm64.deb ... 175s Unpacking liblzf1:arm64 (3.6-4) ... 175s Selecting previously unselected package libqhull-r8.0:arm64. 175s Preparing to unpack .../053-libqhull-r8.0_2020.2-6build1_arm64.deb ... 175s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 175s Selecting previously unselected package libraqm0:arm64. 175s Preparing to unpack .../054-libraqm0_0.10.1-1build1_arm64.deb ... 175s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 175s Selecting previously unselected package libssu0:arm64. 175s Preparing to unpack .../055-libssu0_1.4-3build2_arm64.deb ... 175s Unpacking libssu0:arm64 (1.4-3build2) ... 175s Selecting previously unselected package libssw0:arm64. 175s Preparing to unpack .../056-libssw0_1.1-14build1_arm64.deb ... 175s Unpacking libssw0:arm64 (1.1-14build1) ... 175s Selecting previously unselected package libwebpdemux2:arm64. 175s Preparing to unpack .../057-libwebpdemux2_1.4.0-0.1_arm64.deb ... 175s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 175s Selecting previously unselected package libwebpmux3:arm64. 175s Preparing to unpack .../058-libwebpmux3_1.4.0-0.1_arm64.deb ... 175s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 175s Selecting previously unselected package libxslt1.1:arm64. 176s Preparing to unpack .../059-libxslt1.1_1.1.39-0exp1build1_arm64.deb ... 176s Unpacking libxslt1.1:arm64 (1.1.39-0exp1build1) ... 176s Selecting previously unselected package python-matplotlib-data. 176s Preparing to unpack .../060-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 176s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 176s Selecting previously unselected package python3-all. 176s Preparing to unpack .../061-python3-all_3.12.3-0ubuntu1_arm64.deb ... 176s Unpacking python3-all (3.12.3-0ubuntu1) ... 176s Selecting previously unselected package python3-appdirs. 176s Preparing to unpack .../062-python3-appdirs_1.4.4-4_all.deb ... 176s Unpacking python3-appdirs (1.4.4-4) ... 176s Selecting previously unselected package python3-asttokens. 176s Preparing to unpack .../063-python3-asttokens_2.4.1-1_all.deb ... 176s Unpacking python3-asttokens (2.4.1-1) ... 176s Selecting previously unselected package python3-numpy. 176s Preparing to unpack .../064-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ... 176s Unpacking python3-numpy (1:1.26.4+ds-10) ... 176s Selecting previously unselected package python3-h5py-serial. 176s Preparing to unpack .../065-python3-h5py-serial_3.10.0-1ubuntu3_arm64.deb ... 176s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 176s Selecting previously unselected package python3-h5py. 176s Preparing to unpack .../066-python3-h5py_3.10.0-1ubuntu3_all.deb ... 176s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 177s Selecting previously unselected package python3-colorama. 177s Preparing to unpack .../067-python3-colorama_0.4.6-4_all.deb ... 177s Unpacking python3-colorama (0.4.6-4) ... 177s Selecting previously unselected package python3-click. 177s Preparing to unpack .../068-python3-click_8.1.7-1_all.deb ... 177s Unpacking python3-click (8.1.7-1) ... 177s Selecting previously unselected package python3-dateutil. 177s Preparing to unpack .../069-python3-dateutil_2.9.0-2_all.deb ... 177s Unpacking python3-dateutil (2.9.0-2) ... 177s Selecting previously unselected package python3-pandas-lib:arm64. 177s Preparing to unpack .../070-python3-pandas-lib_2.1.4+dfsg-8_arm64.deb ... 177s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 177s Selecting previously unselected package python3-pandas. 177s Preparing to unpack .../071-python3-pandas_2.1.4+dfsg-8_all.deb ... 177s Unpacking python3-pandas (2.1.4+dfsg-8) ... 178s Selecting previously unselected package python3-decorator. 178s Preparing to unpack .../072-python3-decorator_5.1.1-5_all.deb ... 178s Unpacking python3-decorator (5.1.1-5) ... 178s Selecting previously unselected package python3-scipy. 178s Preparing to unpack .../073-python3-scipy_1.12.0-2_arm64.deb ... 178s Unpacking python3-scipy (1.12.0-2) ... 178s Selecting previously unselected package python3-biom-format. 178s Preparing to unpack .../074-python3-biom-format_2.1.16-1_arm64.deb ... 178s Unpacking python3-biom-format (2.1.16-1) ... 178s Selecting previously unselected package python3-brotli. 178s Preparing to unpack .../075-python3-brotli_1.1.0-2build2_arm64.deb ... 178s Unpacking python3-brotli (1.1.0-2build2) ... 178s Selecting previously unselected package python3-contourpy. 178s Preparing to unpack .../076-python3-contourpy_1.0.7-3_arm64.deb ... 178s Unpacking python3-contourpy (1.0.7-3) ... 178s Selecting previously unselected package python3-cycler. 179s Preparing to unpack .../077-python3-cycler_0.12.1-1_all.deb ... 179s Unpacking python3-cycler (0.12.1-1) ... 179s Selecting previously unselected package python3-executing. 179s Preparing to unpack .../078-python3-executing_2.0.1-0.1_all.deb ... 179s Unpacking python3-executing (2.0.1-0.1) ... 179s Selecting previously unselected package python3-ufolib2. 179s Preparing to unpack .../079-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 179s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 179s Selecting previously unselected package python3-mpmath. 179s Preparing to unpack .../080-python3-mpmath_1.3.0-1_all.deb ... 179s Unpacking python3-mpmath (1.3.0-1) ... 179s Selecting previously unselected package python3-sympy. 179s Preparing to unpack .../081-python3-sympy_1.12-8_all.deb ... 179s Unpacking python3-sympy (1.12-8) ... 179s Selecting previously unselected package python3-fs. 179s Preparing to unpack .../082-python3-fs_2.4.16-4_all.deb ... 179s Unpacking python3-fs (2.4.16-4) ... 179s Selecting previously unselected package python3-lxml:arm64. 179s Preparing to unpack .../083-python3-lxml_5.2.1-1_arm64.deb ... 179s Unpacking python3-lxml:arm64 (5.2.1-1) ... 179s Selecting previously unselected package python3-lz4. 179s Preparing to unpack .../084-python3-lz4_4.0.2+dfsg-1build4_arm64.deb ... 179s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 179s Selecting previously unselected package python3-unicodedata2. 179s Preparing to unpack .../085-python3-unicodedata2_15.1.0+ds-1build1_arm64.deb ... 179s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 179s Selecting previously unselected package unicode-data. 179s Preparing to unpack .../086-unicode-data_15.1.0-1_all.deb ... 179s Unpacking unicode-data (15.1.0-1) ... 180s Selecting previously unselected package python3-fonttools. 180s Preparing to unpack .../087-python3-fonttools_4.46.0-1build2_arm64.deb ... 180s Unpacking python3-fonttools (4.46.0-1build2) ... 180s Selecting previously unselected package python3-hdmedians. 180s Preparing to unpack .../088-python3-hdmedians_0.14.2-5.1build1_arm64.deb ... 180s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 180s Selecting previously unselected package python3-parso. 180s Preparing to unpack .../089-python3-parso_0.8.3-1_all.deb ... 180s Unpacking python3-parso (0.8.3-1) ... 180s Selecting previously unselected package python3-typeshed. 180s Preparing to unpack .../090-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 180s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 180s Selecting previously unselected package python3-jedi. 180s Preparing to unpack .../091-python3-jedi_0.19.1+ds1-1_all.deb ... 180s Unpacking python3-jedi (0.19.1+ds1-1) ... 181s Selecting previously unselected package python3-traitlets. 181s Preparing to unpack .../092-python3-traitlets_5.5.0-2_all.deb ... 181s Unpacking python3-traitlets (5.5.0-2) ... 181s Selecting previously unselected package python3-matplotlib-inline. 181s Preparing to unpack .../093-python3-matplotlib-inline_0.1.6-2_all.deb ... 181s Unpacking python3-matplotlib-inline (0.1.6-2) ... 181s Selecting previously unselected package python3-ptyprocess. 181s Preparing to unpack .../094-python3-ptyprocess_0.7.0-5_all.deb ... 181s Unpacking python3-ptyprocess (0.7.0-5) ... 181s Selecting previously unselected package python3-pexpect. 181s Preparing to unpack .../095-python3-pexpect_4.9-2_all.deb ... 181s Unpacking python3-pexpect (4.9-2) ... 181s Selecting previously unselected package python3-wcwidth. 181s Preparing to unpack .../096-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ... 181s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 181s Selecting previously unselected package python3-prompt-toolkit. 181s Preparing to unpack .../097-python3-prompt-toolkit_3.0.47-1_all.deb ... 181s Unpacking python3-prompt-toolkit (3.0.47-1) ... 181s Selecting previously unselected package python3-pure-eval. 181s Preparing to unpack .../098-python3-pure-eval_0.2.2-2_all.deb ... 181s Unpacking python3-pure-eval (0.2.2-2) ... 181s Selecting previously unselected package python3-stack-data. 181s Preparing to unpack .../099-python3-stack-data_0.6.3-1_all.deb ... 181s Unpacking python3-stack-data (0.6.3-1) ... 181s Selecting previously unselected package python3-setuptools. 181s Preparing to unpack .../100-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 181s Unpacking python3-setuptools (68.1.2-2ubuntu1) ... 181s Selecting previously unselected package python3-ipython. 181s Preparing to unpack .../101-python3-ipython_8.20.0-1ubuntu1_all.deb ... 181s Unpacking python3-ipython (8.20.0-1ubuntu1) ... 181s Selecting previously unselected package libopenjp2-7:arm64. 181s Preparing to unpack .../102-libopenjp2-7_2.5.0-2build3_arm64.deb ... 181s Unpacking libopenjp2-7:arm64 (2.5.0-2build3) ... 181s Selecting previously unselected package python3-pil:arm64. 182s Preparing to unpack .../103-python3-pil_10.3.0-2_arm64.deb ... 182s Unpacking python3-pil:arm64 (10.3.0-2) ... 182s Selecting previously unselected package python3-tk:arm64. 182s Preparing to unpack .../104-python3-tk_3.12.3-0ubuntu1_arm64.deb ... 182s Unpacking python3-tk:arm64 (3.12.3-0ubuntu1) ... 182s Selecting previously unselected package python3-pil.imagetk:arm64. 182s Preparing to unpack .../105-python3-pil.imagetk_10.3.0-2_arm64.deb ... 182s Unpacking python3-pil.imagetk:arm64 (10.3.0-2) ... 182s Selecting previously unselected package python3-kiwisolver. 182s Preparing to unpack .../106-python3-kiwisolver_1.4.5-1_arm64.deb ... 182s Unpacking python3-kiwisolver (1.4.5-1) ... 182s Selecting previously unselected package python3-packaging. 182s Preparing to unpack .../107-python3-packaging_24.0-1_all.deb ... 182s Unpacking python3-packaging (24.0-1) ... 182s Selecting previously unselected package python3-matplotlib. 182s Preparing to unpack .../108-python3-matplotlib_3.6.3-2ubuntu1_arm64.deb ... 182s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 182s Selecting previously unselected package python3-natsort. 182s Preparing to unpack .../109-python3-natsort_8.0.2-2_all.deb ... 182s Unpacking python3-natsort (8.0.2-2) ... 182s Selecting previously unselected package python3-skbio. 182s Preparing to unpack .../110-python3-skbio_0.5.9-4build1_arm64.deb ... 182s Unpacking python3-skbio (0.5.9-4build1) ... 182s Selecting previously unselected package python3-iow. 182s Preparing to unpack .../111-python3-iow_1.0.6-5_arm64.deb ... 182s Unpacking python3-iow (1.0.6-5) ... 182s Selecting previously unselected package python3-unifrac. 182s Preparing to unpack .../112-python3-unifrac_1.3-2build1_arm64.deb ... 182s Unpacking python3-unifrac (1.3-2build1) ... 182s Selecting previously unselected package autopkgtest-satdep. 182s Preparing to unpack .../113-1-autopkgtest-satdep.deb ... 182s Unpacking autopkgtest-satdep (0) ... 183s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 183s Setting up liblcms2-2:arm64 (2.14-2build1) ... 183s Setting up python3-pure-eval (0.2.2-2) ... 183s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 184s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 184s Setting up python3-parso (0.8.3-1) ... 184s Setting up python3-colorama (0.4.6-4) ... 184s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 184s Setting up python3-asttokens (2.4.1-1) ... 185s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 185s Setting up fonts-lyx (2.4.0-1) ... 185s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 185s Setting up x11-common (1:7.7+23ubuntu3) ... 187s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 187s Setting up python3-all (3.12.3-0ubuntu1) ... 187s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ... 187s Setting up python3-click (8.1.7-1) ... 187s Setting up libaec0:arm64 (1.1.3-1) ... 187s Setting up python3-natsort (8.0.2-2) ... 187s Setting up unicode-data (15.1.0-1) ... 187s Setting up python3-decorator (5.1.1-5) ... 188s Setting up libblas3:arm64 (3.12.0-3build1) ... 188s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 188s Setting up python3-packaging (24.0-1) ... 188s Setting up python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 188s Setting up python3-typeshed (0.0~git20231111.6764465-3) ... 188s Setting up python3-executing (2.0.1-0.1) ... 188s Setting up python3-brotli (1.1.0-2build2) ... 189s Setting up liblzf1:arm64 (3.6-4) ... 189s Setting up python3-cycler (0.12.1-1) ... 189s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 189s Setting up python3-kiwisolver (1.4.5-1) ... 189s Setting up libmpc3:arm64 (1.3.1-1build1) ... 189s Setting up libatomic1:arm64 (14.1.0-1ubuntu1) ... 189s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 189s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ... 189s Setting up libubsan1:arm64 (14.1.0-1ubuntu1) ... 189s Setting up libhwasan0:arm64 (14.1.0-1ubuntu1) ... 189s Setting up python3-traitlets (5.5.0-2) ... 190s Setting up libasan8:arm64 (14.1.0-1ubuntu1) ... 190s Setting up libxslt1.1:arm64 (1.1.39-0exp1build1) ... 190s Setting up libopenjp2-7:arm64 (2.5.0-2build3) ... 190s Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ... 190s Setting up python3-dateutil (2.9.0-2) ... 190s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 190s Setting up libtsan2:arm64 (14.1.0-1ubuntu1) ... 190s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 190s Setting up python3-mpmath (1.3.0-1) ... 191s Setting up libisl23:arm64 (0.26-3build1) ... 191s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 191s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 191s Setting up python3-appdirs (1.4.4-4) ... 191s Setting up python3-stack-data (0.6.3-1) ... 191s Setting up libssw0:arm64 (1.1-14build1) ... 191s Setting up libcc1-0:arm64 (14.1.0-1ubuntu1) ... 191s Setting up liblsan0:arm64 (14.1.0-1ubuntu1) ... 191s Setting up libsz2:arm64 (1.1.3-1) ... 191s Setting up libitm1:arm64 (14.1.0-1ubuntu1) ... 191s Setting up python3-ptyprocess (0.7.0-5) ... 192s Setting up python3-prompt-toolkit (3.0.47-1) ... 192s Setting up python3-sympy (1.12-8) ... 199s Setting up liblapack3:arm64 (3.12.0-3build1) ... 199s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 199s Setting up libxft2:arm64 (2.3.6-1build1) ... 199s Setting up cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 199s Setting up python3-jedi (0.19.1+ds1-1) ... 199s Setting up libtk8.6:arm64 (8.6.14-1build1) ... 199s Setting up python3-matplotlib-inline (0.1.6-2) ... 200s Setting up python3-fs (2.4.16-4) ... 200s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 200s Setting up libtmglib3:arm64 (3.12.0-3build1) ... 200s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 200s Setting up python3-pexpect (4.9-2) ... 201s Setting up libraqm0:arm64 (0.10.1-1build1) ... 201s Setting up python3-numpy (1:1.26.4+ds-10) ... 203s Setting up python3-hdmedians (0.14.2-5.1build1) ... 203s Setting up libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ... 203s Setting up python3-lxml:arm64 (5.2.1-1) ... 204s Setting up liblapacke:arm64 (3.12.0-3build1) ... 204s Setting up python3-contourpy (1.0.7-3) ... 205s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 205s Setting up libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ... 205s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 205s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 205s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 205s Setting up python3-scipy (1.12.0-2) ... 209s Setting up cpp-13 (13.2.0-23ubuntu4) ... 209s Setting up blt (2.5.3+dfsg-7build1) ... 209s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 209s Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 209s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 210s Setting up python3-tk:arm64 (3.12.3-0ubuntu1) ... 211s Setting up gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 211s Setting up python3-pil:arm64 (10.3.0-2) ... 212s Setting up python3-pandas (2.1.4+dfsg-8) ... 217s Setting up python3-pil.imagetk:arm64 (10.3.0-2) ... 217s Setting up python3-ipython (8.20.0-1ubuntu1) ... 218s Setting up python3-h5py (3.10.0-1ubuntu3) ... 218s Setting up gcc-13 (13.2.0-23ubuntu4) ... 218s Setting up cpp (4:13.2.0-7ubuntu1) ... 219s Setting up g++-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 219s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 219s Setting up g++-13 (13.2.0-23ubuntu4) ... 219s Setting up libssu0:arm64 (1.4-3build2) ... 219s Setting up gcc (4:13.2.0-7ubuntu1) ... 219s Setting up python3-biom-format (2.1.16-1) ... 219s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 219s Setting up g++ (4:13.2.0-7ubuntu1) ... 219s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 219s Setting up build-essential (12.10ubuntu1) ... 219s Setting up python3-fonttools (4.46.0-1build2) ... 220s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 220s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 222s Setting up python3-skbio (0.5.9-4build1) ... 223s Setting up python3-iow (1.0.6-5) ... 223s Setting up python3-unifrac (1.3-2build1) ... 223s Setting up autopkgtest-satdep (0) ... 223s Processing triggers for libc-bin (2.39-3.1ubuntu2) ... 224s Processing triggers for man-db (2.12.1-2) ... 233s (Reading database ... 96652 files and directories currently installed.) 233s Removing autopkgtest-satdep (0) ... 234s autopkgtest [05:03:33]: test run-unit-test: [----------------------- 235s Test 4 -- Unifrac python tests 244s test_ssu_table_not_subset_tree (tests.test_api.EdgeCasesTests.test_ssu_table_not_subset_tree) ... ok 245s test_unweighted_extra_tips (tests.test_api.EdgeCasesTests.test_unweighted_extra_tips) ... ok 245s test_unweighted_minimal_trees (tests.test_api.EdgeCasesTests.test_unweighted_minimal_trees) ... ok 245s test_unweighted_otus_out_of_order (tests.test_api.EdgeCasesTests.test_unweighted_otus_out_of_order) ... ok 245s test_unweighted_root_not_observed (tests.test_api.EdgeCasesTests.test_unweighted_root_not_observed) ... ok 245s test_unweighted_unifrac (tests.test_api.EdgeCasesTests.test_unweighted_unifrac) ... ok 245s test_unweighted_unifrac_identity (tests.test_api.EdgeCasesTests.test_unweighted_unifrac_identity) ... ok 245s test_unweighted_unifrac_non_overlapping (tests.test_api.EdgeCasesTests.test_unweighted_unifrac_non_overlapping) ... ok 245s test_unweighted_unifrac_symmetry (tests.test_api.EdgeCasesTests.test_unweighted_unifrac_symmetry) ... ok 246s test_weighted_extra_tips (tests.test_api.EdgeCasesTests.test_weighted_extra_tips) ... ok 246s test_weighted_normalized_root_not_observed (tests.test_api.EdgeCasesTests.test_weighted_normalized_root_not_observed) ... ok 246s test_weighted_otus_out_of_order (tests.test_api.EdgeCasesTests.test_weighted_otus_out_of_order) ... ok 246s test_weighted_root_not_observed (tests.test_api.EdgeCasesTests.test_weighted_root_not_observed) ... ok 246s test_weighted_unifrac (tests.test_api.EdgeCasesTests.test_weighted_unifrac) ... ok 246s test_weighted_unifrac_identity (tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity) ... ok 246s test_weighted_unifrac_identity_normalized (tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity_normalized) ... ok 246s test_weighted_unifrac_non_overlapping (tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping) ... ok 246s test_weighted_unifrac_non_overlapping_normalized (tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping_normalized) ... ok 247s test_weighted_unifrac_normalized (tests.test_api.EdgeCasesTests.test_weighted_unifrac_normalized) ... ok 247s test_weighted_unifrac_symmetry (tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry) ... ok 247s test_weighted_unifrac_symmetry_normalized (tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry_normalized) ... ok 247s test_faith_pd (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd) ... WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s ok 247s test_faith_pd_all_observed (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_all_observed) ... ok 247s test_faith_pd_biom_table_empty (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_biom_table_empty) ... ok 247s test_faith_pd_extra_tips (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_extra_tips) ... WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s WARNING: Some samples had zero counts and were filtered out. 247s ok 247s test_faith_pd_invalid_input (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_invalid_input) ... ok 247s test_faith_pd_minimal (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_minimal) ... WARNING: Some samples had zero counts and were filtered out. 247s ok 247s test_faith_pd_none_observed (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_none_observed) ... WARNING: All samples had zero counts. Forcing zero result. 247s ok 248s test_faith_pd_root_not_observed (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_root_not_observed) ... WARNING: Some samples had zero counts and were filtered out. 248s /tmp/autopkgtest.40p1Fa/build.aEK/src/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 248s self.assertAlmostEqual(actual[0], expected) 248s WARNING: Some samples had zero counts and were filtered out. 248s /tmp/autopkgtest.40p1Fa/build.aEK/src/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 248s self.assertAlmostEqual(actual[0], expected) 248s ok 248s test_faith_pd_series_name (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_series_name) ... WARNING: Some samples had zero counts and were filtered out. 248s ok 248s test_faith_pd_table_not_subset_tree (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_table_not_subset_tree) ... ok 248s test_faith_pd_zero_branches_omitted (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_zero_branches_omitted) ... WARNING: Some samples had zero counts and were filtered out. 248s /tmp/autopkgtest.40p1Fa/build.aEK/src/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 248s self.assertAlmostEqual(actual[0], expected) 248s ok 248s test_meta_unifrac (tests.test_api.UnifracAPITests.test_meta_unifrac) ... ok 248s test_ssu_bad_method (tests.test_api.UnifracAPITests.test_ssu_bad_method) ... ok 248s test_ssu_bad_table (tests.test_api.UnifracAPITests.test_ssu_bad_table) ... ok 248s test_ssu_bad_tree (tests.test_api.UnifracAPITests.test_ssu_bad_tree) ... ok 248s test_unweighted_fp32_inmem (tests.test_api.UnifracAPITests.test_unweighted_fp32_inmem) ... ok 248s test_unweighted_fp64_inmem (tests.test_api.UnifracAPITests.test_unweighted_fp64_inmem) ... ok 248s test_unweighted_inmem (tests.test_api.UnifracAPITests.test_unweighted_inmem) ... ok 248s test_unweighted_root_eval_issue_46 (tests.test_api.UnifracAPITests.test_unweighted_root_eval_issue_46) ... ok 248s test_meta_unifrac (tests.test_methods.StateUnifracTests.test_meta_unifrac) 248s meta_unifrac should give correct result on sample trees ... ok 248s test_meta_unifrac_alpha_not_generalized (tests.test_methods.StateUnifracTests.test_meta_unifrac_alpha_not_generalized) ... ok 248s test_meta_unifrac_bad_consolidation (tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_consolidation) ... ok 248s test_meta_unifrac_bad_method (tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_method) ... ok 248s test_meta_unifrac_missing (tests.test_methods.StateUnifracTests.test_meta_unifrac_missing) ... ok 248s test_meta_unifrac_no_method (tests.test_methods.StateUnifracTests.test_meta_unifrac_no_method) ... ok 248s test_meta_unifrac_unbalanced (tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced) ... ok 248s test_meta_unifrac_unbalanced_weights (tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced_weights) ... ok 248s test_meta_validation (tests.test_methods.StateUnifracTests.test_meta_validation) ... ok 248s 248s ---------------------------------------------------------------------- 248s Ran 49 tests in 4.179s 248s 248s OK 249s ====== PASS =========== 249s 249s autopkgtest [05:03:48]: test run-unit-test: -----------------------] 250s autopkgtest [05:03:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 250s run-unit-test PASS 251s autopkgtest [05:03:50]: test autodep8-python3: preparing testbed 351s autopkgtest [05:05:30]: testbed dpkg architecture: arm64 351s autopkgtest [05:05:30]: testbed apt version: 2.9.5 351s autopkgtest [05:05:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 352s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 352s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 352s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [383 kB] 352s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [54.4 kB] 352s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 352s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [103 kB] 352s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [32.5 kB] 352s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [381 kB] 353s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [7928 B] 353s Fetched 1081 kB in 1s (985 kB/s) 353s Reading package lists... 357s Reading package lists... 357s Building dependency tree... 357s Reading state information... 358s Calculating upgrade... 359s The following packages will be upgraded: 359s libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 359s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 359s Need to get 9207 kB of archives. 359s After this operation, 31.7 kB disk space will be freed. 359s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-devtools arm64 2.39-3.1ubuntu2 [27.7 kB] 359s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6-dev arm64 2.39-3.1ubuntu2 [1592 kB] 360s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-dev-bin arm64 2.39-3.1ubuntu2 [19.7 kB] 360s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6 arm64 2.39-3.1ubuntu2 [2769 kB] 360s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-bin arm64 2.39-3.1ubuntu2 [579 kB] 360s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 locales all 2.39-3.1ubuntu2 [4220 kB] 362s Preconfiguring packages ... 362s Fetched 9207 kB in 1s (7019 kB/s) 362s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78326 files and directories currently installed.) 362s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu2_arm64.deb ... 362s Unpacking libc-devtools (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 362s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu2_arm64.deb ... 362s Unpacking libc6-dev:arm64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 363s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu2_arm64.deb ... 363s Unpacking libc-dev-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 363s Preparing to unpack .../libc6_2.39-3.1ubuntu2_arm64.deb ... 364s Unpacking libc6:arm64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 365s Setting up libc6:arm64 (2.39-3.1ubuntu2) ... 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78326 files and directories currently installed.) 366s Preparing to unpack .../libc-bin_2.39-3.1ubuntu2_arm64.deb ... 366s Unpacking libc-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 366s Setting up libc-bin (2.39-3.1ubuntu2) ... 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78326 files and directories currently installed.) 366s Preparing to unpack .../locales_2.39-3.1ubuntu2_all.deb ... 366s Unpacking locales (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 366s Setting up locales (2.39-3.1ubuntu2) ... 367s Generating locales (this might take a while)... 369s en_US.UTF-8... done 369s Generation complete. 370s Setting up libc-dev-bin (2.39-3.1ubuntu2) ... 370s Setting up libc-devtools (2.39-3.1ubuntu2) ... 370s Setting up libc6-dev:arm64 (2.39-3.1ubuntu2) ... 370s Processing triggers for man-db (2.12.1-2) ... 371s Reading package lists... 371s Building dependency tree... 371s Reading state information... 373s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 374s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 374s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 374s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 374s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 375s Reading package lists... 375s Reading package lists... 376s Building dependency tree... 376s Reading state information... 376s Calculating upgrade... 377s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 377s Reading package lists... 377s Building dependency tree... 377s Reading state information... 377s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 382s Reading package lists... 382s Building dependency tree... 382s Reading state information... 383s Starting pkgProblemResolver with broken count: 0 383s Starting 2 pkgProblemResolver with broken count: 0 383s Done 383s The following additional packages will be installed: 383s blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 libgraphite2-3 383s libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-hl-100t64 383s libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblapacke liblbfgsb0 383s liblcms2-2 liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 libssu0 libssw0 383s libsz2 libtcl8.6 libtk8.6 libtmglib3 libwebpdemux2 libwebpmux3 libxft2 383s libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 383s python3-appdirs python3-asttokens python3-biom-format python3-brotli 383s python3-click python3-colorama python3-contourpy python3-cycler 383s python3-dateutil python3-decorator python3-executing python3-fonttools 383s python3-fs python3-h5py python3-h5py-serial python3-hdmedians python3-iow 383s python3-ipython python3-jedi python3-kiwisolver python3-lxml python3-lz4 383s python3-matplotlib python3-matplotlib-inline python3-mpmath python3-natsort 383s python3-numpy python3-packaging python3-pandas python3-pandas-lib 383s python3-parso python3-pexpect python3-pil python3-pil.imagetk 383s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-scipy 383s python3-setuptools python3-skbio python3-stack-data python3-sympy python3-tk 383s python3-traitlets python3-typeshed python3-ufolib2 python3-unifrac 383s python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 383s Suggested packages: 383s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 383s python-biom-format-doc python-cycler-doc python-h5py-doc python-ipython-doc 383s python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript 383s gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi 383s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 383s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 383s python-natsort-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 383s python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc 383s python-scipy-doc python-setuptools-doc python-skbio-doc texlive-fonts-extra 383s python-sympy-doc tix python3-tk-dbg 383s Recommended packages: 383s javascript-common python3-bs4 python3-cssselect python3-html5lib 383s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 383s python3-tables python3-olefile g++ | c++-compiler isympy-common 383s The following NEW packages will be installed: 383s autopkgtest-satdep blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 383s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 383s libhdf5-hl-100t64 libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 383s liblapacke liblbfgsb0 liblcms2-2 liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 383s libssu0 libssw0 libsz2 libtcl8.6 libtk8.6 libtmglib3 libwebpdemux2 383s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 383s python3-all python3-appdirs python3-asttokens python3-biom-format 383s python3-brotli python3-click python3-colorama python3-contourpy 383s python3-cycler python3-dateutil python3-decorator python3-executing 383s python3-fonttools python3-fs python3-h5py python3-h5py-serial 383s python3-hdmedians python3-iow python3-ipython python3-jedi 383s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 383s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 383s python3-packaging python3-pandas python3-pandas-lib python3-parso 383s python3-pexpect python3-pil python3-pil.imagetk python3-prompt-toolkit 383s python3-ptyprocess python3-pure-eval python3-scipy python3-setuptools 383s python3-skbio python3-stack-data python3-sympy python3-tk python3-traitlets 383s python3-typeshed python3-ufolib2 python3-unifrac python3-wcwidth 383s tk8.6-blt2.5 unicode-data x11-common 383s 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. 383s Need to get 68.5 MB/68.5 MB of archives. 383s After this operation, 318 MB of additional disk space will be used. 383s Get:1 /tmp/autopkgtest.40p1Fa/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 383s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 384s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 384s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 384s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 384s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 384s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 384s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 384s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 384s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-lyx all 2.4.0-1 [171 kB] 384s Get:11 http://ftpmaster.internal/ubuntu oracular/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 384s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 384s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB] 384s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB] 384s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 384s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB] 384s Get:17 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 384s Get:18 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [1192 kB] 384s Get:19 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [121 kB] 384s Get:20 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu4 [55.8 kB] 384s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 384s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 384s Get:23 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 384s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 384s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 libtmglib3 arm64 3.12.0-3build1 [112 kB] 384s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapacke arm64 3.12.0-3build1 [427 kB] 384s Get:27 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 384s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] 384s Get:29 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 384s Get:30 http://ftpmaster.internal/ubuntu oracular/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 384s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 384s Get:32 http://ftpmaster.internal/ubuntu oracular/universe arm64 libssu0 arm64 1.4-3build2 [147 kB] 384s Get:33 http://ftpmaster.internal/ubuntu oracular/universe arm64 libssw0 arm64 1.1-14build1 [21.4 kB] 384s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 384s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 385s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libxslt1.1 arm64 1.1.39-0exp1build1 [166 kB] 385s Get:37 http://ftpmaster.internal/ubuntu oracular/universe arm64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 385s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-all arm64 3.12.3-0ubuntu1 [888 B] 385s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 385s Get:40 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-asttokens all 2.4.1-1 [20.9 kB] 385s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB] 385s Get:42 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu3 [888 kB] 385s Get:43 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 385s Get:44 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 385s Get:45 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-click all 8.1.7-1 [79.1 kB] 385s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 385s Get:47 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [4178 kB] 385s Get:48 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 385s Get:49 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 385s Get:50 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.12.0-2 [15.9 MB] 386s Get:51 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB] 386s Get:52 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] 386s Get:53 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-contourpy arm64 1.0.7-3 [163 kB] 386s Get:54 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 386s Get:55 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-executing all 2.0.1-0.1 [23.3 kB] 386s Get:56 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 386s Get:57 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 386s Get:58 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sympy all 1.12-8 [3966 kB] 386s Get:59 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 386s Get:60 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-lxml arm64 5.2.1-1 [1179 kB] 386s Get:61 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] 386s Get:62 http://ftpmaster.internal/ubuntu oracular/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 387s Get:63 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] 387s Get:64 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-hdmedians arm64 0.14.2-5.1build1 [116 kB] 387s Get:65 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-parso all 0.8.3-1 [67.2 kB] 387s Get:66 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 387s Get:67 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-jedi all 0.19.1+ds1-1 [693 kB] 387s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-traitlets all 5.5.0-2 [85.0 kB] 387s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 387s Get:70 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-ptyprocess all 0.7.0-5 [15.1 kB] 387s Get:71 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-pexpect all 4.9-2 [48.1 kB] 387s Get:72 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB] 387s Get:73 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-prompt-toolkit all 3.0.47-1 [256 kB] 387s Get:74 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pure-eval all 0.2.2-2 [11.1 kB] 387s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-stack-data all 0.6.3-1 [22.0 kB] 387s Get:76 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 387s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ipython all 8.20.0-1ubuntu1 [561 kB] 387s Get:78 http://ftpmaster.internal/ubuntu oracular/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB] 387s Get:79 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-pil arm64 10.3.0-2 [446 kB] 387s Get:80 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-tk arm64 3.12.3-0ubuntu1 [102 kB] 387s Get:81 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pil.imagetk arm64 10.3.0-2 [9268 B] 387s Get:82 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-kiwisolver arm64 1.4.5-1 [48.9 kB] 387s Get:83 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.0-1 [41.1 kB] 387s Get:84 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-matplotlib arm64 3.6.3-2ubuntu1 [5963 kB] 387s Get:85 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-natsort all 8.0.2-2 [33.8 kB] 387s Get:86 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-skbio arm64 0.5.9-4build1 [744 kB] 387s Get:87 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-iow arm64 1.0.6-5 [370 kB] 387s Get:88 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-unifrac arm64 1.3-2build1 [147 kB] 388s Fetched 68.5 MB in 4s (17.0 MB/s) 388s Selecting previously unselected package libtcl8.6:arm64. 389s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78326 files and directories currently installed.) 389s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ... 389s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 389s Selecting previously unselected package libxrender1:arm64. 389s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 389s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 389s Selecting previously unselected package libxft2:arm64. 389s Preparing to unpack .../02-libxft2_2.3.6-1build1_arm64.deb ... 389s Unpacking libxft2:arm64 (2.3.6-1build1) ... 389s Selecting previously unselected package x11-common. 389s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 389s Unpacking x11-common (1:7.7+23ubuntu3) ... 389s Selecting previously unselected package libxss1:arm64. 389s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_arm64.deb ... 389s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 389s Selecting previously unselected package libtk8.6:arm64. 389s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_arm64.deb ... 389s Unpacking libtk8.6:arm64 (8.6.14-1build1) ... 389s Selecting previously unselected package tk8.6-blt2.5. 389s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 389s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 389s Selecting previously unselected package blt. 389s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_arm64.deb ... 389s Unpacking blt (2.5.3+dfsg-7build1) ... 389s Selecting previously unselected package fonts-lyx. 389s Preparing to unpack .../08-fonts-lyx_2.4.0-1_all.deb ... 389s Unpacking fonts-lyx (2.4.0-1) ... 389s Selecting previously unselected package libaec0:arm64. 389s Preparing to unpack .../09-libaec0_1.1.3-1_arm64.deb ... 389s Unpacking libaec0:arm64 (1.1.3-1) ... 389s Selecting previously unselected package libblas3:arm64. 389s Preparing to unpack .../10-libblas3_3.12.0-3build1_arm64.deb ... 389s Unpacking libblas3:arm64 (3.12.0-3build1) ... 389s Selecting previously unselected package libgfortran5:arm64. 389s Preparing to unpack .../11-libgfortran5_14.1.0-1ubuntu1_arm64.deb ... 389s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ... 389s Selecting previously unselected package libgomp1:arm64. 389s Preparing to unpack .../12-libgomp1_14.1.0-1ubuntu1_arm64.deb ... 389s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ... 389s Selecting previously unselected package libgraphite2-3:arm64. 389s Preparing to unpack .../13-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 389s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 389s Selecting previously unselected package libharfbuzz0b:arm64. 389s Preparing to unpack .../14-libharfbuzz0b_8.3.0-2build2_arm64.deb ... 389s Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ... 390s Selecting previously unselected package libsz2:arm64. 390s Preparing to unpack .../15-libsz2_1.1.3-1_arm64.deb ... 390s Unpacking libsz2:arm64 (1.1.3-1) ... 390s Selecting previously unselected package libhdf5-103-1t64:arm64. 390s Preparing to unpack .../16-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 390s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 390s Selecting previously unselected package libhdf5-cpp-103-1t64:arm64. 390s Preparing to unpack .../17-libhdf5-cpp-103-1t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 390s Unpacking libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 390s Selecting previously unselected package libhdf5-hl-100t64:arm64. 390s Preparing to unpack .../18-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 390s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 390s Selecting previously unselected package libimagequant0:arm64. 390s Preparing to unpack .../19-libimagequant0_2.18.0-1build1_arm64.deb ... 390s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 390s Selecting previously unselected package libjs-jquery. 390s Preparing to unpack .../20-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 390s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 390s Selecting previously unselected package libjs-jquery-ui. 390s Preparing to unpack .../21-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 390s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 390s Selecting previously unselected package liblapack3:arm64. 390s Preparing to unpack .../22-liblapack3_3.12.0-3build1_arm64.deb ... 390s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 391s Selecting previously unselected package libtmglib3:arm64. 391s Preparing to unpack .../23-libtmglib3_3.12.0-3build1_arm64.deb ... 391s Unpacking libtmglib3:arm64 (3.12.0-3build1) ... 391s Selecting previously unselected package liblapacke:arm64. 391s Preparing to unpack .../24-liblapacke_3.12.0-3build1_arm64.deb ... 391s Unpacking liblapacke:arm64 (3.12.0-3build1) ... 391s Selecting previously unselected package liblbfgsb0:arm64. 391s Preparing to unpack .../25-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 391s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 391s Selecting previously unselected package liblcms2-2:arm64. 391s Preparing to unpack .../26-liblcms2-2_2.14-2build1_arm64.deb ... 391s Unpacking liblcms2-2:arm64 (2.14-2build1) ... 391s Selecting previously unselected package liblzf1:arm64. 391s Preparing to unpack .../27-liblzf1_3.6-4_arm64.deb ... 391s Unpacking liblzf1:arm64 (3.6-4) ... 391s Selecting previously unselected package libqhull-r8.0:arm64. 391s Preparing to unpack .../28-libqhull-r8.0_2020.2-6build1_arm64.deb ... 391s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 391s Selecting previously unselected package libraqm0:arm64. 391s Preparing to unpack .../29-libraqm0_0.10.1-1build1_arm64.deb ... 391s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 391s Selecting previously unselected package libssu0:arm64. 391s Preparing to unpack .../30-libssu0_1.4-3build2_arm64.deb ... 391s Unpacking libssu0:arm64 (1.4-3build2) ... 391s Selecting previously unselected package libssw0:arm64. 391s Preparing to unpack .../31-libssw0_1.1-14build1_arm64.deb ... 391s Unpacking libssw0:arm64 (1.1-14build1) ... 391s Selecting previously unselected package libwebpdemux2:arm64. 391s Preparing to unpack .../32-libwebpdemux2_1.4.0-0.1_arm64.deb ... 391s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 391s Selecting previously unselected package libwebpmux3:arm64. 391s Preparing to unpack .../33-libwebpmux3_1.4.0-0.1_arm64.deb ... 391s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 391s Selecting previously unselected package libxslt1.1:arm64. 391s Preparing to unpack .../34-libxslt1.1_1.1.39-0exp1build1_arm64.deb ... 391s Unpacking libxslt1.1:arm64 (1.1.39-0exp1build1) ... 391s Selecting previously unselected package python-matplotlib-data. 391s Preparing to unpack .../35-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 391s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 391s Selecting previously unselected package python3-all. 391s Preparing to unpack .../36-python3-all_3.12.3-0ubuntu1_arm64.deb ... 391s Unpacking python3-all (3.12.3-0ubuntu1) ... 391s Selecting previously unselected package python3-appdirs. 391s Preparing to unpack .../37-python3-appdirs_1.4.4-4_all.deb ... 391s Unpacking python3-appdirs (1.4.4-4) ... 391s Selecting previously unselected package python3-asttokens. 391s Preparing to unpack .../38-python3-asttokens_2.4.1-1_all.deb ... 391s Unpacking python3-asttokens (2.4.1-1) ... 391s Selecting previously unselected package python3-numpy. 391s Preparing to unpack .../39-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ... 391s Unpacking python3-numpy (1:1.26.4+ds-10) ... 391s Selecting previously unselected package python3-h5py-serial. 391s Preparing to unpack .../40-python3-h5py-serial_3.10.0-1ubuntu3_arm64.deb ... 391s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 391s Selecting previously unselected package python3-h5py. 391s Preparing to unpack .../41-python3-h5py_3.10.0-1ubuntu3_all.deb ... 391s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 391s Selecting previously unselected package python3-colorama. 391s Preparing to unpack .../42-python3-colorama_0.4.6-4_all.deb ... 391s Unpacking python3-colorama (0.4.6-4) ... 391s Selecting previously unselected package python3-click. 391s Preparing to unpack .../43-python3-click_8.1.7-1_all.deb ... 391s Unpacking python3-click (8.1.7-1) ... 391s Selecting previously unselected package python3-dateutil. 391s Preparing to unpack .../44-python3-dateutil_2.9.0-2_all.deb ... 391s Unpacking python3-dateutil (2.9.0-2) ... 392s Selecting previously unselected package python3-pandas-lib:arm64. 392s Preparing to unpack .../45-python3-pandas-lib_2.1.4+dfsg-8_arm64.deb ... 392s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 392s Selecting previously unselected package python3-pandas. 392s Preparing to unpack .../46-python3-pandas_2.1.4+dfsg-8_all.deb ... 392s Unpacking python3-pandas (2.1.4+dfsg-8) ... 392s Selecting previously unselected package python3-decorator. 392s Preparing to unpack .../47-python3-decorator_5.1.1-5_all.deb ... 392s Unpacking python3-decorator (5.1.1-5) ... 392s Selecting previously unselected package python3-scipy. 392s Preparing to unpack .../48-python3-scipy_1.12.0-2_arm64.deb ... 392s Unpacking python3-scipy (1.12.0-2) ... 393s Selecting previously unselected package python3-biom-format. 393s Preparing to unpack .../49-python3-biom-format_2.1.16-1_arm64.deb ... 393s Unpacking python3-biom-format (2.1.16-1) ... 393s Selecting previously unselected package python3-brotli. 393s Preparing to unpack .../50-python3-brotli_1.1.0-2build2_arm64.deb ... 393s Unpacking python3-brotli (1.1.0-2build2) ... 393s Selecting previously unselected package python3-contourpy. 393s Preparing to unpack .../51-python3-contourpy_1.0.7-3_arm64.deb ... 393s Unpacking python3-contourpy (1.0.7-3) ... 393s Selecting previously unselected package python3-cycler. 393s Preparing to unpack .../52-python3-cycler_0.12.1-1_all.deb ... 393s Unpacking python3-cycler (0.12.1-1) ... 393s Selecting previously unselected package python3-executing. 393s Preparing to unpack .../53-python3-executing_2.0.1-0.1_all.deb ... 393s Unpacking python3-executing (2.0.1-0.1) ... 393s Selecting previously unselected package python3-ufolib2. 393s Preparing to unpack .../54-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 393s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 393s Selecting previously unselected package python3-mpmath. 393s Preparing to unpack .../55-python3-mpmath_1.3.0-1_all.deb ... 393s Unpacking python3-mpmath (1.3.0-1) ... 393s Selecting previously unselected package python3-sympy. 393s Preparing to unpack .../56-python3-sympy_1.12-8_all.deb ... 393s Unpacking python3-sympy (1.12-8) ... 393s Selecting previously unselected package python3-fs. 393s Preparing to unpack .../57-python3-fs_2.4.16-4_all.deb ... 393s Unpacking python3-fs (2.4.16-4) ... 393s Selecting previously unselected package python3-lxml:arm64. 393s Preparing to unpack .../58-python3-lxml_5.2.1-1_arm64.deb ... 393s Unpacking python3-lxml:arm64 (5.2.1-1) ... 393s Selecting previously unselected package python3-lz4. 393s Preparing to unpack .../59-python3-lz4_4.0.2+dfsg-1build4_arm64.deb ... 393s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 393s Selecting previously unselected package unicode-data. 393s Preparing to unpack .../60-unicode-data_15.1.0-1_all.deb ... 393s Unpacking unicode-data (15.1.0-1) ... 394s Selecting previously unselected package python3-fonttools. 394s Preparing to unpack .../61-python3-fonttools_4.46.0-1build2_arm64.deb ... 394s Unpacking python3-fonttools (4.46.0-1build2) ... 394s Selecting previously unselected package python3-hdmedians. 394s Preparing to unpack .../62-python3-hdmedians_0.14.2-5.1build1_arm64.deb ... 394s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 394s Selecting previously unselected package python3-parso. 394s Preparing to unpack .../63-python3-parso_0.8.3-1_all.deb ... 394s Unpacking python3-parso (0.8.3-1) ... 394s Selecting previously unselected package python3-typeshed. 394s Preparing to unpack .../64-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 394s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 394s Selecting previously unselected package python3-jedi. 395s Preparing to unpack .../65-python3-jedi_0.19.1+ds1-1_all.deb ... 395s Unpacking python3-jedi (0.19.1+ds1-1) ... 395s Selecting previously unselected package python3-traitlets. 395s Preparing to unpack .../66-python3-traitlets_5.5.0-2_all.deb ... 395s Unpacking python3-traitlets (5.5.0-2) ... 395s Selecting previously unselected package python3-matplotlib-inline. 395s Preparing to unpack .../67-python3-matplotlib-inline_0.1.6-2_all.deb ... 395s Unpacking python3-matplotlib-inline (0.1.6-2) ... 395s Selecting previously unselected package python3-ptyprocess. 396s Preparing to unpack .../68-python3-ptyprocess_0.7.0-5_all.deb ... 396s Unpacking python3-ptyprocess (0.7.0-5) ... 396s Selecting previously unselected package python3-pexpect. 396s Preparing to unpack .../69-python3-pexpect_4.9-2_all.deb ... 396s Unpacking python3-pexpect (4.9-2) ... 396s Selecting previously unselected package python3-wcwidth. 396s Preparing to unpack .../70-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ... 396s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 396s Selecting previously unselected package python3-prompt-toolkit. 396s Preparing to unpack .../71-python3-prompt-toolkit_3.0.47-1_all.deb ... 396s Unpacking python3-prompt-toolkit (3.0.47-1) ... 397s Selecting previously unselected package python3-pure-eval. 397s Preparing to unpack .../72-python3-pure-eval_0.2.2-2_all.deb ... 397s Unpacking python3-pure-eval (0.2.2-2) ... 397s Selecting previously unselected package python3-stack-data. 397s Preparing to unpack .../73-python3-stack-data_0.6.3-1_all.deb ... 397s Unpacking python3-stack-data (0.6.3-1) ... 397s Selecting previously unselected package python3-setuptools. 397s Preparing to unpack .../74-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 397s Unpacking python3-setuptools (68.1.2-2ubuntu1) ... 397s Selecting previously unselected package python3-ipython. 397s Preparing to unpack .../75-python3-ipython_8.20.0-1ubuntu1_all.deb ... 397s Unpacking python3-ipython (8.20.0-1ubuntu1) ... 397s Selecting previously unselected package libopenjp2-7:arm64. 397s Preparing to unpack .../76-libopenjp2-7_2.5.0-2build3_arm64.deb ... 397s Unpacking libopenjp2-7:arm64 (2.5.0-2build3) ... 397s Selecting previously unselected package python3-pil:arm64. 397s Preparing to unpack .../77-python3-pil_10.3.0-2_arm64.deb ... 397s Unpacking python3-pil:arm64 (10.3.0-2) ... 397s Selecting previously unselected package python3-tk:arm64. 397s Preparing to unpack .../78-python3-tk_3.12.3-0ubuntu1_arm64.deb ... 397s Unpacking python3-tk:arm64 (3.12.3-0ubuntu1) ... 397s Selecting previously unselected package python3-pil.imagetk:arm64. 397s Preparing to unpack .../79-python3-pil.imagetk_10.3.0-2_arm64.deb ... 397s Unpacking python3-pil.imagetk:arm64 (10.3.0-2) ... 397s Selecting previously unselected package python3-kiwisolver. 398s Preparing to unpack .../80-python3-kiwisolver_1.4.5-1_arm64.deb ... 398s Unpacking python3-kiwisolver (1.4.5-1) ... 398s Selecting previously unselected package python3-packaging. 398s Preparing to unpack .../81-python3-packaging_24.0-1_all.deb ... 398s Unpacking python3-packaging (24.0-1) ... 398s Selecting previously unselected package python3-matplotlib. 398s Preparing to unpack .../82-python3-matplotlib_3.6.3-2ubuntu1_arm64.deb ... 398s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 398s Selecting previously unselected package python3-natsort. 398s Preparing to unpack .../83-python3-natsort_8.0.2-2_all.deb ... 398s Unpacking python3-natsort (8.0.2-2) ... 398s Selecting previously unselected package python3-skbio. 398s Preparing to unpack .../84-python3-skbio_0.5.9-4build1_arm64.deb ... 398s Unpacking python3-skbio (0.5.9-4build1) ... 398s Selecting previously unselected package python3-iow. 398s Preparing to unpack .../85-python3-iow_1.0.6-5_arm64.deb ... 398s Unpacking python3-iow (1.0.6-5) ... 398s Selecting previously unselected package python3-unifrac. 398s Preparing to unpack .../86-python3-unifrac_1.3-2build1_arm64.deb ... 398s Unpacking python3-unifrac (1.3-2build1) ... 398s Selecting previously unselected package autopkgtest-satdep. 398s Preparing to unpack .../87-2-autopkgtest-satdep.deb ... 398s Unpacking autopkgtest-satdep (0) ... 399s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 399s Setting up liblcms2-2:arm64 (2.14-2build1) ... 399s Setting up python3-pure-eval (0.2.2-2) ... 399s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 399s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 399s Setting up python3-parso (0.8.3-1) ... 400s Setting up python3-colorama (0.4.6-4) ... 400s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 400s Setting up python3-asttokens (2.4.1-1) ... 400s Setting up fonts-lyx (2.4.0-1) ... 400s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 400s Setting up x11-common (1:7.7+23ubuntu3) ... 403s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 403s Setting up python3-all (3.12.3-0ubuntu1) ... 403s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ... 403s Setting up python3-click (8.1.7-1) ... 403s Setting up libaec0:arm64 (1.1.3-1) ... 403s Setting up python3-natsort (8.0.2-2) ... 403s Setting up unicode-data (15.1.0-1) ... 403s Setting up python3-decorator (5.1.1-5) ... 403s Setting up libblas3:arm64 (3.12.0-3build1) ... 403s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 403s Setting up python3-packaging (24.0-1) ... 403s Setting up python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 404s Setting up python3-typeshed (0.0~git20231111.6764465-3) ... 404s Setting up python3-executing (2.0.1-0.1) ... 404s Setting up python3-brotli (1.1.0-2build2) ... 404s Setting up liblzf1:arm64 (3.6-4) ... 404s Setting up python3-cycler (0.12.1-1) ... 404s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 404s Setting up python3-kiwisolver (1.4.5-1) ... 404s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 404s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ... 404s Setting up python3-traitlets (5.5.0-2) ... 404s Setting up libxslt1.1:arm64 (1.1.39-0exp1build1) ... 404s Setting up libopenjp2-7:arm64 (2.5.0-2build3) ... 404s Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ... 404s Setting up python3-dateutil (2.9.0-2) ... 405s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 405s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 405s Setting up python3-mpmath (1.3.0-1) ... 405s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 405s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 405s Setting up python3-appdirs (1.4.4-4) ... 405s Setting up python3-stack-data (0.6.3-1) ... 406s Setting up libssw0:arm64 (1.1-14build1) ... 406s Setting up libsz2:arm64 (1.1.3-1) ... 406s Setting up python3-ptyprocess (0.7.0-5) ... 406s Setting up python3-prompt-toolkit (3.0.47-1) ... 406s Setting up python3-sympy (1.12-8) ... 412s Setting up liblapack3:arm64 (3.12.0-3build1) ... 412s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 412s Setting up libxft2:arm64 (2.3.6-1build1) ... 412s Setting up python3-jedi (0.19.1+ds1-1) ... 412s Setting up libtk8.6:arm64 (8.6.14-1build1) ... 412s Setting up python3-matplotlib-inline (0.1.6-2) ... 413s Setting up python3-fs (2.4.16-4) ... 413s Setting up libtmglib3:arm64 (3.12.0-3build1) ... 413s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 413s Setting up python3-pexpect (4.9-2) ... 413s Setting up libraqm0:arm64 (0.10.1-1build1) ... 413s Setting up python3-numpy (1:1.26.4+ds-10) ... 415s Setting up python3-hdmedians (0.14.2-5.1build1) ... 416s Setting up python3-lxml:arm64 (5.2.1-1) ... 416s Setting up liblapacke:arm64 (3.12.0-3build1) ... 416s Setting up python3-contourpy (1.0.7-3) ... 416s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 416s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 416s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 416s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 416s Setting up python3-scipy (1.12.0-2) ... 419s Setting up blt (2.5.3+dfsg-7build1) ... 419s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 419s Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 419s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 420s Setting up python3-tk:arm64 (3.12.3-0ubuntu1) ... 420s Setting up python3-pil:arm64 (10.3.0-2) ... 420s Setting up python3-pandas (2.1.4+dfsg-8) ... 425s Setting up python3-pil.imagetk:arm64 (10.3.0-2) ... 425s Setting up python3-ipython (8.20.0-1ubuntu1) ... 426s Setting up python3-h5py (3.10.0-1ubuntu3) ... 426s Setting up libssu0:arm64 (1.4-3build2) ... 426s Setting up python3-biom-format (2.1.16-1) ... 426s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 426s Setting up python3-fonttools (4.46.0-1build2) ... 427s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 428s Setting up python3-skbio (0.5.9-4build1) ... 429s Setting up python3-iow (1.0.6-5) ... 429s Setting up python3-unifrac (1.3-2build1) ... 429s Setting up autopkgtest-satdep (0) ... 429s Processing triggers for libc-bin (2.39-3.1ubuntu2) ... 429s Processing triggers for man-db (2.12.1-2) ... 435s (Reading database ... 95513 files and directories currently installed.) 435s Removing autopkgtest-satdep (0) ... 437s autopkgtest [05:06:56]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import unifrac; print(unifrac)" ; done 437s autopkgtest [05:06:56]: test autodep8-python3: [----------------------- 437s Testing with python3.12: 440s 441s autopkgtest [05:07:00]: test autodep8-python3: -----------------------] 442s autopkgtest [05:07:01]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 442s autodep8-python3 PASS (superficial) 442s autopkgtest [05:07:01]: @@@@@@@@@@@@@@@@@@@@ summary 442s run-unit-test PASS 442s autodep8-python3 PASS (superficial) 454s nova [W] Skipping flock in bos03-arm64 454s Creating nova instance adt-oracular-arm64-unifrac-20240629-045939-juju-7f2275-prod-proposed-migration-environment-2-1c7fdc80-cdc3-4cff-ad47-e04b37a32ec1 from image adt/ubuntu-oracular-arm64-server-20240628.img (UUID 1d33ad8b-0074-4d9e-8f8a-17cdfc67ef5f)... 454s nova [W] Skipping flock in bos03-arm64 454s Creating nova instance adt-oracular-arm64-unifrac-20240629-045939-juju-7f2275-prod-proposed-migration-environment-2-1c7fdc80-cdc3-4cff-ad47-e04b37a32ec1 from image adt/ubuntu-oracular-arm64-server-20240628.img (UUID 1d33ad8b-0074-4d9e-8f8a-17cdfc67ef5f)...