0s autopkgtest [09:26:39]: starting date and time: 2024-05-24 09:26:39+0000 0s autopkgtest [09:26:39]: git checkout: 699e7f9f ssh-setup/nova: explicitely set 'fqdn' in cloud-init 0s autopkgtest [09:26:39]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8y649_y4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/3.5.1+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-8.secgroup --name adt-oracular-arm64-r-cran-stars-20240524-092638-juju-7f2275-prod-proposed-migration-environment-3-a65eb06e-913b-4c18-ad28-f32c1623e75b --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 241s autopkgtest [09:30:40]: testbed dpkg architecture: arm64 241s autopkgtest [09:30:40]: testbed apt version: 2.9.3 241s autopkgtest [09:30:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 243s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 244s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [54.1 kB] 244s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3388 B] 244s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [497 kB] 245s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 245s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [173 kB] 245s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [12.3 kB] 245s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [505 kB] 245s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [2532 B] 246s Fetched 1323 kB in 3s (449 kB/s) 246s Reading package lists... 252s Reading package lists... 253s Building dependency tree... 253s Reading state information... 255s Calculating upgrade... 256s The following packages will be upgraded: 256s libclang-cpp18 libclang1-18 libllvm18 256s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 256s Need to get 47.0 MB of archives. 256s After this operation, 1054 kB of additional disk space will be used. 256s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 libclang-cpp18 arm64 1:18.1.6-1 [13.2 MB] 260s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libllvm18 arm64 1:18.1.6-1 [26.3 MB] 264s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libclang1-18 arm64 1:18.1.6-1 [7531 kB] 267s Fetched 47.0 MB in 9s (5174 kB/s) 267s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78364 files and directories currently installed.) 267s Preparing to unpack .../libclang-cpp18_1%3a18.1.6-1_arm64.deb ... 267s Unpacking libclang-cpp18 (1:18.1.6-1) over (1:18.1.3-1) ... 269s Preparing to unpack .../libllvm18_1%3a18.1.6-1_arm64.deb ... 269s Unpacking libllvm18:arm64 (1:18.1.6-1) over (1:18.1.3-1) ... 271s Preparing to unpack .../libclang1-18_1%3a18.1.6-1_arm64.deb ... 271s Unpacking libclang1-18 (1:18.1.6-1) over (1:18.1.3-1) ... 272s Setting up libllvm18:arm64 (1:18.1.6-1) ... 272s Setting up libclang1-18 (1:18.1.6-1) ... 272s Setting up libclang-cpp18 (1:18.1.6-1) ... 272s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 273s Reading package lists... 274s Building dependency tree... 274s Reading state information... 276s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 277s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 277s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 277s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 277s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 282s Reading package lists... 282s Reading package lists... 283s Building dependency tree... 283s Reading state information... 285s Calculating upgrade... 286s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 286s Reading package lists... 287s Building dependency tree... 287s Reading state information... 289s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 294s autopkgtest [09:31:33]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 294s autopkgtest [09:31:33]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 297s Get:1 http://ftpmaster.internal/ubuntu oracular/universe r-cran-stars 0.6-4-1 (dsc) [2749 B] 297s Get:2 http://ftpmaster.internal/ubuntu oracular/universe r-cran-stars 0.6-4-1 (tar) [3714 kB] 297s Get:3 http://ftpmaster.internal/ubuntu oracular/universe r-cran-stars 0.6-4-1 (diff) [4316 B] 298s gpgv: Signature made Tue Oct 17 13:19:14 2023 UTC 298s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 298s gpgv: issuer "tille@debian.org" 298s gpgv: Can't check signature: No public key 298s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-4-1.dsc: no acceptable signature found 299s autopkgtest [09:31:38]: testing package r-cran-stars version 0.6-4-1 299s autopkgtest [09:31:38]: build not needed 303s autopkgtest [09:31:42]: test run-unit-test: preparing testbed 305s Reading package lists... 305s Building dependency tree... 305s Reading state information... 306s Starting pkgProblemResolver with broken count: 0 307s Starting 2 pkgProblemResolver with broken count: 0 307s Done 308s The following additional packages will be installed: 308s fontconfig fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax 308s gdal-data gdal-plugins javascript-common libaec0 libarmadillo12 308s libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 308s libfreexl1 libfyba0t64 libgdal34t64 libgeos-c1t64 libgeos3.12.1t64 308s libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b 308s libhdf4-0-alt libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libjs-bootstrap 308s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 308s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 308s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 308s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 308s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 libltdl7 308s liblua5.4-0 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 308s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 308s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpoppler134 308s libpq5 libproj25 libqhull-r8.0 librttopo1 libsm6 libsnappy1v5 308s libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 308s libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libxcb-render0 308s libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 littler 308s mysql-common node-bootstrap-sass node-html5shiv node-normalize.css pandoc 308s pandoc-data proj-data r-base-core r-cran-abind r-cran-areal r-cran-askpass 308s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 308s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 308s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 308s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 308s r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 308s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate 308s r-cran-exactextractr r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn 308s r-cran-fontawesome r-cran-formula r-cran-fs r-cran-future 308s r-cran-future.apply r-cran-generics r-cran-ggforce r-cran-ggplot2 308s r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest r-cran-gridextra 308s r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv 308s r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib r-cran-jsonlite 308s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 308s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest 308s r-cran-lwgeom r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass 308s r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime 308s r-cran-misctools r-cran-munsell r-cran-ncdfgeom r-cran-ncmeta r-cran-nlme 308s r-cran-openssl r-cran-parallelly r-cran-pbapply r-cran-pcict r-cran-pillar 308s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm 308s r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises r-cran-proxy 308s r-cran-ps r-cran-purrr r-cran-r6 r-cran-randomforest r-cran-rappdirs 308s r-cran-raster r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 308s r-cran-rcppeigen r-cran-rdpack r-cran-rematch2 r-cran-rex r-cran-rlang 308s r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot r-cran-s2 308s r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-sftime 308s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 308s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 308s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 308s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stars r-cran-stringi 308s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 308s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 308s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 308s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 308s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 308s unzip x11-common xdg-utils zip 308s Suggested packages: 308s apache2 | lighttpd | httpd geotiff-bin gdal-bin libgeotiff-epsg 308s libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs fonts-mathjax-extras 308s fonts-stix libjs-mathjax-doc liblcms2-utils odbc-postgresql tdsodbc ogdi-bin 308s proj-bin tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 308s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 308s librsvg2-bin groff ghc php python ruby libjs-katex 308s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 308s r-base-html r-cran-png r-cran-lpsolve r-cran-quadprog r-cran-kernlab 308s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-rstudioapi 308s r-cran-rmysql r-cran-sessioninfo r-cran-reshape2 r-cran-magick r-cran-getopt 308s r-cran-mapproj r-cran-tinytest r-cran-bit64 r-cran-formattable 308s r-cran-nanotime r-cran-palmerpenguins r-cran-vdiffr r-cran-roxygen2 308s r-cran-inline r-cran-hmisc r-cran-rvest r-cran-spelling r-cran-bench 308s r-cran-blob r-cran-here r-cran-hms 308s Recommended packages: 308s proj-bin node-jquery poppler-data r-recommended r-base-dev r-doc-html 308s r-cran-thematic r-cran-mockery r-cran-spelling r-cran-spdata r-cran-tinytest 308s r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami r-cran-data.table 308s r-cran-rcpparmadillo r-cran-xml2 r-cran-dt r-cran-bench r-cran-decor 308s r-cran-lobstr r-cran-progress r-cran-webutils r-cran-gh r-cran-broom 308s r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-foreign 308s r-cran-ncdf4 r-cran-unitizer r-cran-rsvg r-cran-rhpcblasctl r-cran-r.rsp 308s r-cran-markdown r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-multcomp 308s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-svglite r-cran-vdiffr 308s r-cran-lintr r-cran-pander r-cran-fields r-cran-testit r-cran-jpeg 308s r-cran-png r-cran-readr r-cran-formatr r-cran-gridsvg r-cran-magick 308s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot 308s node-highlight.js r-cran-tidyverse r-cran-r.utils r-cran-geosphere 308s r-cran-runit r-cran-pkgdown r-cran-zip r-cran-sodium r-cran-lubridate 308s r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-remotes r-cran-aer 308s r-cran-car r-cran-spdep r-cran-statmod r-cran-urca r-cran-bookdown 308s r-cran-webfakes r-cran-cba r-cran-pingr r-cran-igraph r-cran-gbrd 308s r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-bit64 308s r-cran-dichromat r-cran-hms r-cran-blob r-cran-nanoarrow r-cran-googlevis 308s r-cran-isocodes r-cran-sm r-cran-gsl r-cran-locfit r-cran-spatial 308s r-cran-nleqslv r-cran-glmnet r-cran-xml r-cran-formattable r-cran-zeallot 308s r-cran-renv r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron 308s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 308s x11-xserver-utils 309s The following NEW packages will be installed: 309s autopkgtest-satdep fontconfig fonts-font-awesome fonts-glyphicons-halflings 309s fonts-mathjax gdal-data gdal-plugins javascript-common libaec0 309s libarmadillo12 libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64 309s libdatrie1 libfreexl1 libfyba0t64 libgdal34t64 libgeos-c1t64 309s libgeos3.12.1t64 libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 309s libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 libhdf5-hl-100t64 libice6 309s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 309s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 309s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 309s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 309s libjs-twitter-bootstrap-datepicker libkmlbase1t64 libkmldom1t64 309s libkmlengine1t64 liblapack3 liblcms2-2 libltdl7 liblua5.4-0 libminizip1t64 309s libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 309s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 309s libpaper-utils libpaper1 libpixman-1-0 libpoppler134 libpq5 libproj25 309s libqhull-r8.0 librttopo1 libsm6 libsnappy1v5 libspatialite8t64 libsuperlu6 309s libsz2 libtcl8.6 libthai-data libthai0 libtk8.6 libudunits2-0 309s libudunits2-data liburiparser1 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 309s libxft2 libxrender1 libxss1 libxt6t64 littler mysql-common 309s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 309s proj-data r-base-core r-cran-abind r-cran-areal r-cran-askpass 309s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 309s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 309s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 309s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 309s r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 309s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate 309s r-cran-exactextractr r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn 309s r-cran-fontawesome r-cran-formula r-cran-fs r-cran-future 309s r-cran-future.apply r-cran-generics r-cran-ggforce r-cran-ggplot2 309s r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest r-cran-gridextra 309s r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv 309s r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib r-cran-jsonlite 309s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 309s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest 309s r-cran-lwgeom r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass 309s r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime 309s r-cran-misctools r-cran-munsell r-cran-ncdfgeom r-cran-ncmeta r-cran-nlme 309s r-cran-openssl r-cran-parallelly r-cran-pbapply r-cran-pcict r-cran-pillar 309s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm 309s r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises r-cran-proxy 309s r-cran-ps r-cran-purrr r-cran-r6 r-cran-randomforest r-cran-rappdirs 309s r-cran-raster r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 309s r-cran-rcppeigen r-cran-rdpack r-cran-rematch2 r-cran-rex r-cran-rlang 309s r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot r-cran-s2 309s r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-sftime 309s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 309s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 309s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 309s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stars r-cran-stringi 309s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 309s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 309s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 309s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 309s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 309s unzip x11-common xdg-utils zip 309s 0 upgraded, 270 newly installed, 0 to remove and 0 not upgraded. 309s Need to get 275 MB/275 MB of archives. 309s After this operation, 748 MB of additional disk space will be used. 309s Get:1 /tmp/autopkgtest.PhjGwe/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [948 B] 310s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 310s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 310s Get:4 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 310s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 310s Get:6 http://ftpmaster.internal/ubuntu oracular/universe arm64 gdal-data all 3.8.5+dfsg-1 [261 kB] 310s Get:7 http://ftpmaster.internal/ubuntu oracular/universe arm64 gdal-plugins arm64 3.8.5+dfsg-1 [24.6 kB] 310s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 javascript-common all 11+nmu1 [5936 B] 310s Get:9 http://ftpmaster.internal/ubuntu oracular/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 310s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 310s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB] 311s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 311s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 libarpack2t64 arm64 3.9.1-1.1build2 [90.6 kB] 311s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1build1 [166 kB] 311s Get:15 http://ftpmaster.internal/ubuntu oracular/universe arm64 libarmadillo12 arm64 1:12.8.2+dfsg-1 [105 kB] 311s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB] 311s Get:17 http://ftpmaster.internal/ubuntu oracular/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB] 311s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 311s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 311s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 311s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 311s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 libcairo2 arm64 1.18.0-3build1 [555 kB] 311s Get:23 http://ftpmaster.internal/ubuntu oracular/universe arm64 libcfitsio10t64 arm64 4.3.1-1.1build2 [520 kB] 311s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 311s Get:25 http://ftpmaster.internal/ubuntu oracular/universe arm64 libfyba0t64 arm64 4.1.1-11build1 [120 kB] 311s Get:26 http://ftpmaster.internal/ubuntu oracular/universe arm64 libminizip1t64 arm64 1:1.3.dfsg-3.1ubuntu2 [22.7 kB] 311s Get:27 http://ftpmaster.internal/ubuntu oracular/universe arm64 libfreexl1 arm64 2.0.0-1build2 [41.9 kB] 311s Get:28 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgeos3.12.1t64 arm64 3.12.1-3build1 [828 kB] 311s Get:29 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgeos-c1t64 arm64 3.12.1-3build1 [88.7 kB] 311s Get:30 http://ftpmaster.internal/ubuntu oracular/universe arm64 proj-data all 9.4.0-1build2 [7885 kB] 312s Get:31 http://ftpmaster.internal/ubuntu oracular/universe arm64 libproj25 arm64 9.4.0-1build2 [1293 kB] 312s Get:32 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgeotiff5 arm64 1.7.1-5build1 [60.3 kB] 312s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 libgif7 arm64 5.2.2-1ubuntu1 [35.5 kB] 312s Get:34 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 312s Get:35 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf4-0-alt arm64 4.3.0-1 [271 kB] 312s Get:36 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [1192 kB] 312s Get:37 http://ftpmaster.internal/ubuntu oracular/universe arm64 liburiparser1 arm64 0.9.7+dfsg-2build1 [35.4 kB] 312s Get:38 http://ftpmaster.internal/ubuntu oracular/universe arm64 libkmlbase1t64 arm64 1.3.0-12build1 [47.8 kB] 312s Get:39 http://ftpmaster.internal/ubuntu oracular/universe arm64 libkmldom1t64 arm64 1.3.0-12build1 [146 kB] 312s Get:40 http://ftpmaster.internal/ubuntu oracular/universe arm64 libkmlengine1t64 arm64 1.3.0-12build1 [68.1 kB] 312s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 mysql-common all 5.8+1.1.0build1 [6746 B] 312s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 libmysqlclient21 arm64 8.0.37-1 [1244 kB] 312s Get:43 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu4 [55.8 kB] 312s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 libnetcdf19t64 arm64 1:4.9.2-5ubuntu4 [471 kB] 312s Get:45 http://ftpmaster.internal/ubuntu oracular/main arm64 libltdl7 arm64 2.4.7-7build1 [40.4 kB] 312s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 libodbc2 arm64 2.3.12-1build2 [145 kB] 312s Get:47 http://ftpmaster.internal/ubuntu oracular/main arm64 unixodbc-common all 2.3.12-1build2 [8646 B] 312s Get:48 http://ftpmaster.internal/ubuntu oracular/main arm64 libodbcinst2 arm64 2.3.12-1build2 [29.6 kB] 312s Get:49 http://ftpmaster.internal/ubuntu oracular/universe arm64 libogdi4.1 arm64 4.1.1+ds-4 [211 kB] 312s Get:50 http://ftpmaster.internal/ubuntu oracular/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB] 312s Get:51 http://ftpmaster.internal/ubuntu oracular/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] 312s Get:52 http://ftpmaster.internal/ubuntu oracular/main arm64 libpoppler134 arm64 24.02.0-1ubuntu9 [1072 kB] 312s Get:53 http://ftpmaster.internal/ubuntu oracular/main arm64 libpq5 arm64 16.2-1ubuntu4 [137 kB] 312s Get:54 http://ftpmaster.internal/ubuntu oracular/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 312s Get:55 http://ftpmaster.internal/ubuntu oracular/universe arm64 librttopo1 arm64 1.1.0-3build2 [187 kB] 312s Get:56 http://ftpmaster.internal/ubuntu oracular/universe arm64 libspatialite8t64 arm64 5.1.0-3build1 [1814 kB] 312s Get:57 http://ftpmaster.internal/ubuntu oracular/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3 [874 kB] 312s Get:58 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgdal34t64 arm64 3.8.5+dfsg-1 [7904 kB] 313s Get:59 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB] 313s Get:60 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2build1 [70.8 kB] 313s Get:61 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB] 313s Get:62 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 313s Get:63 http://ftpmaster.internal/ubuntu oracular/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 313s Get:64 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 313s Get:65 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 313s Get:66 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 313s Get:67 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 313s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 313s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 313s Get:70 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 313s Get:71 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 313s Get:72 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 313s Get:73 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 313s Get:74 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 313s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 313s Get:76 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 313s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 313s Get:78 http://ftpmaster.internal/ubuntu oracular/main arm64 liblua5.4-0 arm64 5.4.6-3build2 [158 kB] 313s Get:79 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 313s Get:80 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 313s Get:81 http://ftpmaster.internal/ubuntu oracular/main arm64 libpango-1.0-0 arm64 1.52.2+ds-1 [230 kB] 313s Get:82 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangoft2-1.0-0 arm64 1.52.2+ds-1 [41.9 kB] 313s Get:83 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangocairo-1.0-0 arm64 1.52.2+ds-1 [27.2 kB] 313s Get:84 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB] 313s Get:85 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B] 313s Get:86 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 313s Get:87 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 313s Get:88 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 313s Get:89 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 313s Get:90 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 313s Get:91 http://ftpmaster.internal/ubuntu oracular/universe arm64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 313s Get:92 http://ftpmaster.internal/ubuntu oracular/universe arm64 libudunits2-0 arm64 2.2.28-7build1 [52.8 kB] 313s Get:93 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 313s Get:94 http://ftpmaster.internal/ubuntu oracular/main arm64 zip arm64 3.0-13build1 [171 kB] 313s Get:95 http://ftpmaster.internal/ubuntu oracular/main arm64 unzip arm64 6.0-28ubuntu4 [171 kB] 313s Get:96 http://ftpmaster.internal/ubuntu oracular/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 313s Get:97 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-base-core arm64 4.4.0-2 [28.3 MB] 315s Get:98 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-littler arm64 0.3.20-1 [96.4 kB] 315s Get:99 http://ftpmaster.internal/ubuntu oracular/universe arm64 littler all 0.3.20-1 [2486 B] 315s Get:100 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 315s Get:101 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 315s Get:102 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 315s Get:103 http://ftpmaster.internal/ubuntu oracular/universe arm64 pandoc-data all 3.1.3-2build2 [78.3 kB] 315s Get:104 http://ftpmaster.internal/ubuntu oracular/universe arm64 pandoc arm64 3.1.3+ds-3build1 [27.7 MB] 317s Get:105 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 317s Get:106 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 317s Get:107 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 317s Get:108 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 317s Get:109 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 318s Get:110 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 318s Get:111 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 318s Get:112 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 318s Get:113 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 318s Get:114 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 318s Get:115 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 318s Get:116 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 318s Get:117 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 318s Get:118 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 318s Get:119 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 318s Get:120 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 318s Get:121 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 318s Get:122 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 318s Get:123 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 318s Get:124 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-class arm64 7.3-22-2build1 [88.3 kB] 318s Get:125 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 318s Get:126 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 318s Get:127 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-kernsmooth arm64 2.23-24-1 [92.6 kB] 318s Get:128 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 318s Get:129 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 318s Get:130 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 318s Get:131 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 318s Get:132 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 318s Get:133 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-s2 arm64 1.1.6-1build2 [1947 kB] 318s Get:134 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 318s Get:135 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sf arm64 1.0-16+dfsg-1 [3023 kB] 319s Get:136 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 319s Get:137 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 319s Get:138 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 319s Get:139 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 319s Get:140 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bdsmatrix arm64 1.3-7-1 [300 kB] 319s Get:141 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 319s Get:142 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 319s Get:143 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 319s Get:144 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-digest arm64 0.6.35-1 [195 kB] 319s Get:145 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 319s Get:146 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 319s Get:147 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 319s Get:148 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 319s Get:149 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 319s Get:150 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1build2 [228 kB] 319s Get:151 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 319s Get:152 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 319s Get:153 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 319s Get:154 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cairo arm64 1.6-2-1 [89.0 kB] 319s Get:155 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 319s Get:156 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 319s Get:157 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 319s Get:158 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cluster arm64 2.1.6-1build1 [551 kB] 319s Get:159 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-clue arm64 0.3-65-1 [959 kB] 319s Get:160 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 319s Get:161 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-collapse arm64 2.0.13-1 [3048 kB] 319s Get:162 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 319s Get:163 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 319s Get:164 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 319s Get:165 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 319s Get:166 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1build2 [176 kB] 319s Get:167 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2build2 [402 kB] 319s Get:168 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 320s Get:169 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 320s Get:170 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-yaml arm64 2.3.8-2 [108 kB] 320s Get:171 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 320s Get:172 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 320s Get:173 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cubelyr all 1.0.2-1 [347 kB] 320s Get:174 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 320s Get:175 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 320s Get:176 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 320s Get:177 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 320s Get:178 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 320s Get:179 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 320s Get:180 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-terra arm64 1.7-65-1build2 [3590 kB] 320s Get:181 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-raster arm64 3.6-26-1 [3100 kB] 320s Get:182 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-exactextractr arm64 0.10.0-1build2 [568 kB] 320s Get:183 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-farver arm64 2.1.1-2 [1340 kB] 320s Get:184 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fnn arm64 1.1.4-1 [121 kB] 320s Get:185 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 320s Get:186 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 320s Get:187 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-globals all 0.16.3-1 [120 kB] 320s Get:188 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 321s Get:189 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-parallelly arm64 1.37.1-1build1 [365 kB] 321s Get:190 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 321s Get:191 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 321s Get:192 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 321s Get:193 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 321s Get:194 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-nlme arm64 3.1.164-1build1 [2264 kB] 321s Get:195 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 321s Get:196 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 321s Get:197 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 321s Get:198 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 321s Get:199 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 321s Get:200 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 321s Get:201 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 321s Get:202 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 321s Get:203 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tweenr arm64 2.0.3-1 [404 kB] 322s Get:204 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-polyclip arm64 1.10-6-1 [110 kB] 322s Get:205 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-systemfonts arm64 1.0.5-1 [218 kB] 322s Get:206 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.0-1build1 [1417 kB] 322s Get:207 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ggforce arm64 0.4.2-1 [1778 kB] 322s Get:208 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 322s Get:209 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 322s Get:210 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ggthemes all 5.1.0-1 [434 kB] 322s Get:211 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 322s Get:212 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 322s Get:213 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 323s Get:214 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sftime all 0.2-0-6 [168 kB] 323s Get:215 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xts arm64 0.13.2-1 [770 kB] 323s Get:216 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-intervals arm64 0.15.4-1 [755 kB] 323s Get:217 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spacetime all 1.3-1-1 [2804 kB] 323s Get:218 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stars all 0.6-4-1 [4030 kB] 323s Get:219 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-gstat arm64 2.1-1-2 [2338 kB] 323s Get:220 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xfun arm64 0.44+dfsg-1 [517 kB] 323s Get:221 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-highr all 0.10+dfsg-2 [38.5 kB] 323s Get:222 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 323s Get:223 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-promises arm64 1.3.0+dfsg-1 [286 kB] 323s Get:224 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 323s Get:225 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 324s Get:226 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-knitr all 1.46+dfsg-1 [911 kB] 324s Get:227 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lmtest arm64 0.9.40-1 [396 kB] 324s Get:228 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lwgeom arm64 0.2-13-3build2 [383 kB] 324s Get:229 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 324s Get:230 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 325s Get:231 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-misctools all 0.6-28-1 [99.9 kB] 325s Get:232 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sandwich all 3.1-0-1 [1484 kB] 325s Get:233 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-maxlik all 1.5-2-1 [1550 kB] 325s Get:234 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rnetcdf arm64 2.9-1-1build2 [228 kB] 325s Get:235 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 325s Get:236 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ncmeta all 0.3.6-1 [360 kB] 325s Get:237 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 326s Get:238 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB] 326s Get:239 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pcict arm64 0.5-4.4-1 [94.0 kB] 326s Get:240 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 326s Get:241 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 326s Get:242 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 326s Get:243 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rbibutils arm64 2.2.16-1 [748 kB] 326s Get:244 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rdpack all 2.6-1 [742 kB] 326s Get:245 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-plm all 2.6-4-1 [2161 kB] 326s Get:246 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 326s Get:247 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-randomforest arm64 4.7-1.1-1 [214 kB] 326s Get:248 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 326s Get:249 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 326s Get:250 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 326s Get:251 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 326s Get:252 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 326s Get:253 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 326s Get:254 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB] 326s Get:255 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 326s Get:256 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 326s Get:257 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rpart arm64 4.1.23-1build1 [660 kB] 327s Get:258 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.utils arm64 3.0-4-1 [360 kB] 327s Get:259 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 327s Get:260 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.geom arm64 3.2-9-1 [3938 kB] 327s Get:261 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.random arm64 3.2-3-1 [1157 kB] 327s Get:262 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 327s Get:263 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.sparse arm64 3.0-3-1 [214 kB] 327s Get:264 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.explore arm64 3.2-5-1 [3264 kB] 327s Get:265 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.model arm64 3.2-11-1 [3384 kB] 327s Get:266 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.linnet arm64 3.1-5-1 [1468 kB] 327s Get:267 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat arm64 3.0-7-1 [3817 kB] 328s Get:268 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 328s Get:269 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 328s Get:270 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 330s Preconfiguring packages ... 330s Fetched 275 MB in 19s (14.8 MB/s) 331s Selecting previously unselected package fontconfig. 331s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78365 files and directories currently installed.) 331s Preparing to unpack .../000-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 331s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 331s Selecting previously unselected package fonts-font-awesome. 331s Preparing to unpack .../001-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 331s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 331s Selecting previously unselected package fonts-glyphicons-halflings. 331s Preparing to unpack .../002-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 331s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 331s Selecting previously unselected package fonts-mathjax. 331s Preparing to unpack .../003-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 331s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 332s Selecting previously unselected package gdal-data. 332s Preparing to unpack .../004-gdal-data_3.8.5+dfsg-1_all.deb ... 332s Unpacking gdal-data (3.8.5+dfsg-1) ... 332s Selecting previously unselected package gdal-plugins:arm64. 332s Preparing to unpack .../005-gdal-plugins_3.8.5+dfsg-1_arm64.deb ... 332s Unpacking gdal-plugins:arm64 (3.8.5+dfsg-1) ... 332s Selecting previously unselected package javascript-common. 332s Preparing to unpack .../006-javascript-common_11+nmu1_all.deb ... 332s Unpacking javascript-common (11+nmu1) ... 333s Selecting previously unselected package libaec0:arm64. 333s Preparing to unpack .../007-libaec0_1.1.3-1_arm64.deb ... 333s Unpacking libaec0:arm64 (1.1.3-1) ... 333s Selecting previously unselected package libblas3:arm64. 333s Preparing to unpack .../008-libblas3_3.12.0-3build1_arm64.deb ... 333s Unpacking libblas3:arm64 (3.12.0-3build1) ... 333s Selecting previously unselected package libgfortran5:arm64. 333s Preparing to unpack .../009-libgfortran5_14.1.0-1ubuntu1_arm64.deb ... 333s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ... 333s Selecting previously unselected package liblapack3:arm64. 333s Preparing to unpack .../010-liblapack3_3.12.0-3build1_arm64.deb ... 333s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 333s Selecting previously unselected package libarpack2t64:arm64. 333s Preparing to unpack .../011-libarpack2t64_3.9.1-1.1build2_arm64.deb ... 333s Unpacking libarpack2t64:arm64 (3.9.1-1.1build2) ... 333s Selecting previously unselected package libsuperlu6:arm64. 333s Preparing to unpack .../012-libsuperlu6_6.0.1+dfsg1-1build1_arm64.deb ... 333s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1build1) ... 333s Selecting previously unselected package libarmadillo12. 333s Preparing to unpack .../013-libarmadillo12_1%3a12.8.2+dfsg-1_arm64.deb ... 333s Unpacking libarmadillo12 (1:12.8.2+dfsg-1) ... 334s Selecting previously unselected package libsnappy1v5:arm64. 334s Preparing to unpack .../014-libsnappy1v5_1.2.1-1_arm64.deb ... 334s Unpacking libsnappy1v5:arm64 (1.2.1-1) ... 334s Selecting previously unselected package libblosc1:arm64. 334s Preparing to unpack .../015-libblosc1_1.21.5+ds-1build1_arm64.deb ... 334s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ... 334s Selecting previously unselected package libpixman-1-0:arm64. 334s Preparing to unpack .../016-libpixman-1-0_0.42.2-1build1_arm64.deb ... 334s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 334s Selecting previously unselected package libxcb-render0:arm64. 334s Preparing to unpack .../017-libxcb-render0_1.17.0-2_arm64.deb ... 334s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 334s Selecting previously unselected package libxcb-shm0:arm64. 334s Preparing to unpack .../018-libxcb-shm0_1.17.0-2_arm64.deb ... 334s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 334s Selecting previously unselected package libxrender1:arm64. 334s Preparing to unpack .../019-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 334s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 334s Selecting previously unselected package libcairo2:arm64. 334s Preparing to unpack .../020-libcairo2_1.18.0-3build1_arm64.deb ... 334s Unpacking libcairo2:arm64 (1.18.0-3build1) ... 335s Selecting previously unselected package libcfitsio10t64:arm64. 335s Preparing to unpack .../021-libcfitsio10t64_4.3.1-1.1build2_arm64.deb ... 335s Unpacking libcfitsio10t64:arm64 (4.3.1-1.1build2) ... 335s Selecting previously unselected package libdatrie1:arm64. 335s Preparing to unpack .../022-libdatrie1_0.2.13-3build1_arm64.deb ... 335s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 335s Selecting previously unselected package libfyba0t64:arm64. 335s Preparing to unpack .../023-libfyba0t64_4.1.1-11build1_arm64.deb ... 335s Unpacking libfyba0t64:arm64 (4.1.1-11build1) ... 335s Selecting previously unselected package libminizip1t64:arm64. 335s Preparing to unpack .../024-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ... 335s Unpacking libminizip1t64:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 335s Selecting previously unselected package libfreexl1:arm64. 335s Preparing to unpack .../025-libfreexl1_2.0.0-1build2_arm64.deb ... 335s Unpacking libfreexl1:arm64 (2.0.0-1build2) ... 335s Selecting previously unselected package libgeos3.12.1t64:arm64. 335s Preparing to unpack .../026-libgeos3.12.1t64_3.12.1-3build1_arm64.deb ... 335s Unpacking libgeos3.12.1t64:arm64 (3.12.1-3build1) ... 335s Selecting previously unselected package libgeos-c1t64:arm64. 335s Preparing to unpack .../027-libgeos-c1t64_3.12.1-3build1_arm64.deb ... 335s Unpacking libgeos-c1t64:arm64 (3.12.1-3build1) ... 336s Selecting previously unselected package proj-data. 336s Preparing to unpack .../028-proj-data_9.4.0-1build2_all.deb ... 336s Unpacking proj-data (9.4.0-1build2) ... 336s Selecting previously unselected package libproj25:arm64. 336s Preparing to unpack .../029-libproj25_9.4.0-1build2_arm64.deb ... 336s Unpacking libproj25:arm64 (9.4.0-1build2) ... 336s Selecting previously unselected package libgeotiff5:arm64. 337s Preparing to unpack .../030-libgeotiff5_1.7.1-5build1_arm64.deb ... 337s Unpacking libgeotiff5:arm64 (1.7.1-5build1) ... 337s Selecting previously unselected package libgif7:arm64. 337s Preparing to unpack .../031-libgif7_5.2.2-1ubuntu1_arm64.deb ... 337s Unpacking libgif7:arm64 (5.2.2-1ubuntu1) ... 337s Selecting previously unselected package libsz2:arm64. 337s Preparing to unpack .../032-libsz2_1.1.3-1_arm64.deb ... 337s Unpacking libsz2:arm64 (1.1.3-1) ... 337s Selecting previously unselected package libhdf4-0-alt:arm64. 337s Preparing to unpack .../033-libhdf4-0-alt_4.3.0-1_arm64.deb ... 337s Unpacking libhdf4-0-alt:arm64 (4.3.0-1) ... 337s Selecting previously unselected package libhdf5-103-1t64:arm64. 337s Preparing to unpack .../034-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 337s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 337s Selecting previously unselected package liburiparser1:arm64. 337s Preparing to unpack .../035-liburiparser1_0.9.7+dfsg-2build1_arm64.deb ... 337s Unpacking liburiparser1:arm64 (0.9.7+dfsg-2build1) ... 337s Selecting previously unselected package libkmlbase1t64:arm64. 337s Preparing to unpack .../036-libkmlbase1t64_1.3.0-12build1_arm64.deb ... 337s Unpacking libkmlbase1t64:arm64 (1.3.0-12build1) ... 337s Selecting previously unselected package libkmldom1t64:arm64. 338s Preparing to unpack .../037-libkmldom1t64_1.3.0-12build1_arm64.deb ... 338s Unpacking libkmldom1t64:arm64 (1.3.0-12build1) ... 338s Selecting previously unselected package libkmlengine1t64:arm64. 338s Preparing to unpack .../038-libkmlengine1t64_1.3.0-12build1_arm64.deb ... 338s Unpacking libkmlengine1t64:arm64 (1.3.0-12build1) ... 338s Selecting previously unselected package mysql-common. 338s Preparing to unpack .../039-mysql-common_5.8+1.1.0build1_all.deb ... 338s Unpacking mysql-common (5.8+1.1.0build1) ... 338s Selecting previously unselected package libmysqlclient21:arm64. 338s Preparing to unpack .../040-libmysqlclient21_8.0.37-1_arm64.deb ... 338s Unpacking libmysqlclient21:arm64 (8.0.37-1) ... 338s Selecting previously unselected package libhdf5-hl-100t64:arm64. 338s Preparing to unpack .../041-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 338s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 338s Selecting previously unselected package libnetcdf19t64:arm64. 338s Preparing to unpack .../042-libnetcdf19t64_1%3a4.9.2-5ubuntu4_arm64.deb ... 338s Unpacking libnetcdf19t64:arm64 (1:4.9.2-5ubuntu4) ... 338s Selecting previously unselected package libltdl7:arm64. 339s Preparing to unpack .../043-libltdl7_2.4.7-7build1_arm64.deb ... 339s Unpacking libltdl7:arm64 (2.4.7-7build1) ... 339s Selecting previously unselected package libodbc2:arm64. 339s Preparing to unpack .../044-libodbc2_2.3.12-1build2_arm64.deb ... 339s Unpacking libodbc2:arm64 (2.3.12-1build2) ... 339s Selecting previously unselected package unixodbc-common. 339s Preparing to unpack .../045-unixodbc-common_2.3.12-1build2_all.deb ... 339s Unpacking unixodbc-common (2.3.12-1build2) ... 339s Selecting previously unselected package libodbcinst2:arm64. 339s Preparing to unpack .../046-libodbcinst2_2.3.12-1build2_arm64.deb ... 339s Unpacking libodbcinst2:arm64 (2.3.12-1build2) ... 339s Selecting previously unselected package libogdi4.1:arm64. 339s Preparing to unpack .../047-libogdi4.1_4.1.1+ds-4_arm64.deb ... 339s Unpacking libogdi4.1:arm64 (4.1.1+ds-4) ... 339s Selecting previously unselected package libopenjp2-7:arm64. 339s Preparing to unpack .../048-libopenjp2-7_2.5.0-2build3_arm64.deb ... 339s Unpacking libopenjp2-7:arm64 (2.5.0-2build3) ... 339s Selecting previously unselected package liblcms2-2:arm64. 339s Preparing to unpack .../049-liblcms2-2_2.14-2build1_arm64.deb ... 339s Unpacking liblcms2-2:arm64 (2.14-2build1) ... 339s Selecting previously unselected package libpoppler134:arm64. 339s Preparing to unpack .../050-libpoppler134_24.02.0-1ubuntu9_arm64.deb ... 339s Unpacking libpoppler134:arm64 (24.02.0-1ubuntu9) ... 339s Selecting previously unselected package libpq5:arm64. 340s Preparing to unpack .../051-libpq5_16.2-1ubuntu4_arm64.deb ... 340s Unpacking libpq5:arm64 (16.2-1ubuntu4) ... 340s Selecting previously unselected package libqhull-r8.0:arm64. 340s Preparing to unpack .../052-libqhull-r8.0_2020.2-6build1_arm64.deb ... 340s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 340s Selecting previously unselected package librttopo1:arm64. 340s Preparing to unpack .../053-librttopo1_1.1.0-3build2_arm64.deb ... 340s Unpacking librttopo1:arm64 (1.1.0-3build2) ... 340s Selecting previously unselected package libspatialite8t64:arm64. 340s Preparing to unpack .../054-libspatialite8t64_5.1.0-3build1_arm64.deb ... 340s Unpacking libspatialite8t64:arm64 (5.1.0-3build1) ... 340s Selecting previously unselected package libxerces-c3.2t64:arm64. 340s Preparing to unpack .../055-libxerces-c3.2t64_3.2.4+debian-1.3_arm64.deb ... 340s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.3) ... 340s Selecting previously unselected package libgdal34t64:arm64. 340s Preparing to unpack .../056-libgdal34t64_3.8.5+dfsg-1_arm64.deb ... 340s Unpacking libgdal34t64:arm64 (3.8.5+dfsg-1) ... 341s Selecting previously unselected package libgomp1:arm64. 341s Preparing to unpack .../057-libgomp1_14.1.0-1ubuntu1_arm64.deb ... 341s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ... 341s Selecting previously unselected package libgraphite2-3:arm64. 341s Preparing to unpack .../058-libgraphite2-3_1.3.14-2build1_arm64.deb ... 341s Unpacking libgraphite2-3:arm64 (1.3.14-2build1) ... 341s Selecting previously unselected package libharfbuzz0b:arm64. 341s Preparing to unpack .../059-libharfbuzz0b_8.3.0-2build2_arm64.deb ... 341s Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ... 341s Selecting previously unselected package x11-common. 341s Preparing to unpack .../060-x11-common_1%3a7.7+23ubuntu3_all.deb ... 341s Unpacking x11-common (1:7.7+23ubuntu3) ... 341s Selecting previously unselected package libice6:arm64. 342s Preparing to unpack .../061-libice6_2%3a1.0.10-1build3_arm64.deb ... 342s Unpacking libice6:arm64 (2:1.0.10-1build3) ... 342s Selecting previously unselected package libjs-bootstrap. 342s Preparing to unpack .../062-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 342s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 342s Selecting previously unselected package libjs-popper.js. 342s Preparing to unpack .../063-libjs-popper.js_1.16.1+ds-6_all.deb ... 342s Unpacking libjs-popper.js (1.16.1+ds-6) ... 342s Selecting previously unselected package libjs-bootstrap4. 342s Preparing to unpack .../064-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 342s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 342s Selecting previously unselected package libjs-d3. 342s Preparing to unpack .../065-libjs-d3_3.5.17-4_all.deb ... 342s Unpacking libjs-d3 (3.5.17-4) ... 343s Selecting previously unselected package libjs-es5-shim. 343s Preparing to unpack .../066-libjs-es5-shim_4.6.7-2_all.deb ... 343s Unpacking libjs-es5-shim (4.6.7-2) ... 343s Selecting previously unselected package libjs-highlight.js. 343s Preparing to unpack .../067-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 343s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 343s Selecting previously unselected package libjs-jquery. 343s Preparing to unpack .../068-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 343s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 343s Selecting previously unselected package libjs-jquery-datatables. 343s Preparing to unpack .../069-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 343s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 343s Selecting previously unselected package libjs-sifter.js. 343s Preparing to unpack .../070-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 343s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 343s Selecting previously unselected package libjs-microplugin.js. 343s Preparing to unpack .../071-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 343s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 344s Selecting previously unselected package libjs-jquery-selectize.js. 344s Preparing to unpack .../072-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 344s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 344s Selecting previously unselected package libjs-jquery-ui. 344s Preparing to unpack .../073-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 344s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 344s Selecting previously unselected package libjs-json. 344s Preparing to unpack .../074-libjs-json_0~20221030+~1.0.8-1_all.deb ... 344s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 344s Selecting previously unselected package libjs-prettify. 344s Preparing to unpack .../075-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 344s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 345s Selecting previously unselected package liblua5.4-0:arm64. 345s Preparing to unpack .../076-liblua5.4-0_5.4.6-3build2_arm64.deb ... 345s Unpacking liblua5.4-0:arm64 (5.4.6-3build2) ... 345s Selecting previously unselected package libthai-data. 345s Preparing to unpack .../077-libthai-data_0.1.29-2build1_all.deb ... 345s Unpacking libthai-data (0.1.29-2build1) ... 345s Selecting previously unselected package libthai0:arm64. 345s Preparing to unpack .../078-libthai0_0.1.29-2build1_arm64.deb ... 345s Unpacking libthai0:arm64 (0.1.29-2build1) ... 345s Selecting previously unselected package libpango-1.0-0:arm64. 345s Preparing to unpack .../079-libpango-1.0-0_1.52.2+ds-1_arm64.deb ... 345s Unpacking libpango-1.0-0:arm64 (1.52.2+ds-1) ... 345s Selecting previously unselected package libpangoft2-1.0-0:arm64. 345s Preparing to unpack .../080-libpangoft2-1.0-0_1.52.2+ds-1_arm64.deb ... 345s Unpacking libpangoft2-1.0-0:arm64 (1.52.2+ds-1) ... 345s Selecting previously unselected package libpangocairo-1.0-0:arm64. 345s Preparing to unpack .../081-libpangocairo-1.0-0_1.52.2+ds-1_arm64.deb ... 345s Unpacking libpangocairo-1.0-0:arm64 (1.52.2+ds-1) ... 345s Selecting previously unselected package libpaper1:arm64. 345s Preparing to unpack .../082-libpaper1_1.1.29build1_arm64.deb ... 345s Unpacking libpaper1:arm64 (1.1.29build1) ... 346s Selecting previously unselected package libpaper-utils. 346s Preparing to unpack .../083-libpaper-utils_1.1.29build1_arm64.deb ... 346s Unpacking libpaper-utils (1.1.29build1) ... 346s Selecting previously unselected package libsm6:arm64. 346s Preparing to unpack .../084-libsm6_2%3a1.2.3-1build3_arm64.deb ... 346s Unpacking libsm6:arm64 (2:1.2.3-1build3) ... 346s Selecting previously unselected package libtcl8.6:arm64. 346s Preparing to unpack .../085-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ... 346s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 346s Selecting previously unselected package libxft2:arm64. 346s Preparing to unpack .../086-libxft2_2.3.6-1build1_arm64.deb ... 346s Unpacking libxft2:arm64 (2.3.6-1build1) ... 346s Selecting previously unselected package libxss1:arm64. 346s Preparing to unpack .../087-libxss1_1%3a1.2.3-1build3_arm64.deb ... 346s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 346s Selecting previously unselected package libtk8.6:arm64. 346s Preparing to unpack .../088-libtk8.6_8.6.14-1build1_arm64.deb ... 346s Unpacking libtk8.6:arm64 (8.6.14-1build1) ... 347s Selecting previously unselected package libudunits2-data. 347s Preparing to unpack .../089-libudunits2-data_2.2.28-7build1_all.deb ... 347s Unpacking libudunits2-data (2.2.28-7build1) ... 347s Selecting previously unselected package libudunits2-0. 347s Preparing to unpack .../090-libudunits2-0_2.2.28-7build1_arm64.deb ... 347s Unpacking libudunits2-0 (2.2.28-7build1) ... 347s Selecting previously unselected package libxt6t64:arm64. 347s Preparing to unpack .../091-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 347s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 347s Selecting previously unselected package zip. 347s Preparing to unpack .../092-zip_3.0-13build1_arm64.deb ... 347s Unpacking zip (3.0-13build1) ... 347s Selecting previously unselected package unzip. 347s Preparing to unpack .../093-unzip_6.0-28ubuntu4_arm64.deb ... 347s Unpacking unzip (6.0-28ubuntu4) ... 347s Selecting previously unselected package xdg-utils. 347s Preparing to unpack .../094-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 347s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 347s Selecting previously unselected package r-base-core. 347s Preparing to unpack .../095-r-base-core_4.4.0-2_arm64.deb ... 347s Unpacking r-base-core (4.4.0-2) ... 349s Selecting previously unselected package r-cran-littler. 349s Preparing to unpack .../096-r-cran-littler_0.3.20-1_arm64.deb ... 349s Unpacking r-cran-littler (0.3.20-1) ... 350s Selecting previously unselected package littler. 350s Preparing to unpack .../097-littler_0.3.20-1_all.deb ... 350s Unpacking littler (0.3.20-1) ... 350s Selecting previously unselected package node-bootstrap-sass. 350s Preparing to unpack .../098-node-bootstrap-sass_3.4.3-2_all.deb ... 350s Unpacking node-bootstrap-sass (3.4.3-2) ... 350s Selecting previously unselected package node-html5shiv. 350s Preparing to unpack .../099-node-html5shiv_3.7.3+dfsg-5_all.deb ... 350s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 350s Selecting previously unselected package node-normalize.css. 350s Preparing to unpack .../100-node-normalize.css_8.0.1-5_all.deb ... 350s Unpacking node-normalize.css (8.0.1-5) ... 350s Selecting previously unselected package pandoc-data. 350s Preparing to unpack .../101-pandoc-data_3.1.3-2build2_all.deb ... 350s Unpacking pandoc-data (3.1.3-2build2) ... 350s Selecting previously unselected package pandoc. 350s Preparing to unpack .../102-pandoc_3.1.3+ds-3build1_arm64.deb ... 350s Unpacking pandoc (3.1.3+ds-3build1) ... 355s Selecting previously unselected package r-cran-abind. 355s Preparing to unpack .../103-r-cran-abind_1.4-5-2_all.deb ... 355s Unpacking r-cran-abind (1.4-5-2) ... 355s Selecting previously unselected package r-cran-cli. 355s Preparing to unpack .../104-r-cran-cli_3.6.2-1_arm64.deb ... 355s Unpacking r-cran-cli (3.6.2-1) ... 355s Selecting previously unselected package r-cran-generics. 355s Preparing to unpack .../105-r-cran-generics_0.1.3-1_all.deb ... 355s Unpacking r-cran-generics (0.1.3-1) ... 355s Selecting previously unselected package r-cran-glue. 356s Preparing to unpack .../106-r-cran-glue_1.7.0-1_arm64.deb ... 356s Unpacking r-cran-glue (1.7.0-1) ... 356s Selecting previously unselected package r-cran-rlang. 356s Preparing to unpack .../107-r-cran-rlang_1.1.3-1_arm64.deb ... 356s Unpacking r-cran-rlang (1.1.3-1) ... 356s Selecting previously unselected package r-cran-lifecycle. 356s Preparing to unpack .../108-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 356s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 356s Selecting previously unselected package r-cran-magrittr. 356s Preparing to unpack .../109-r-cran-magrittr_2.0.3-1_arm64.deb ... 356s Unpacking r-cran-magrittr (2.0.3-1) ... 356s Selecting previously unselected package r-cran-fansi. 356s Preparing to unpack .../110-r-cran-fansi_1.0.5-1_arm64.deb ... 356s Unpacking r-cran-fansi (1.0.5-1) ... 356s Selecting previously unselected package r-cran-utf8. 356s Preparing to unpack .../111-r-cran-utf8_1.2.4-1_arm64.deb ... 356s Unpacking r-cran-utf8 (1.2.4-1) ... 357s Selecting previously unselected package r-cran-vctrs. 357s Preparing to unpack .../112-r-cran-vctrs_0.6.5-1_arm64.deb ... 357s Unpacking r-cran-vctrs (0.6.5-1) ... 357s Selecting previously unselected package r-cran-pillar. 357s Preparing to unpack .../113-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 357s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 357s Selecting previously unselected package r-cran-r6. 357s Preparing to unpack .../114-r-cran-r6_2.5.1-1_all.deb ... 357s Unpacking r-cran-r6 (2.5.1-1) ... 357s Selecting previously unselected package r-cran-pkgconfig. 357s Preparing to unpack .../115-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 357s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 357s Selecting previously unselected package r-cran-tibble. 357s Preparing to unpack .../116-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 357s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 358s Selecting previously unselected package r-cran-withr. 358s Preparing to unpack .../117-r-cran-withr_2.5.0-1_all.deb ... 358s Unpacking r-cran-withr (2.5.0-1) ... 358s Selecting previously unselected package r-cran-tidyselect. 358s Preparing to unpack .../118-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 358s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 358s Selecting previously unselected package r-cran-dplyr. 358s Preparing to unpack .../119-r-cran-dplyr_1.1.4-1_arm64.deb ... 358s Unpacking r-cran-dplyr (1.1.4-1) ... 358s Selecting previously unselected package r-cran-purrr. 358s Preparing to unpack .../120-r-cran-purrr_1.0.2-1_arm64.deb ... 358s Unpacking r-cran-purrr (1.0.2-1) ... 358s Selecting previously unselected package r-cran-mass. 358s Preparing to unpack .../121-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 358s Unpacking r-cran-mass (7.3-60.0.1-1) ... 359s Selecting previously unselected package r-cran-class. 359s Preparing to unpack .../122-r-cran-class_7.3-22-2build1_arm64.deb ... 359s Unpacking r-cran-class (7.3-22-2build1) ... 359s Selecting previously unselected package r-cran-proxy. 359s Preparing to unpack .../123-r-cran-proxy_0.4-27-1_arm64.deb ... 359s Unpacking r-cran-proxy (0.4-27-1) ... 359s Selecting previously unselected package r-cran-e1071. 359s Preparing to unpack .../124-r-cran-e1071_1.7-14-1_arm64.deb ... 359s Unpacking r-cran-e1071 (1.7-14-1) ... 359s Selecting previously unselected package r-cran-kernsmooth. 359s Preparing to unpack .../125-r-cran-kernsmooth_2.23-24-1_arm64.deb ... 359s Unpacking r-cran-kernsmooth (2.23-24-1) ... 359s Selecting previously unselected package r-cran-classint. 359s Preparing to unpack .../126-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 359s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 359s Selecting previously unselected package r-cran-dbi. 359s Preparing to unpack .../127-r-cran-dbi_1.2.2-1_all.deb ... 359s Unpacking r-cran-dbi (1.2.2-1) ... 360s Selecting previously unselected package r-cran-pkgkitten. 360s Preparing to unpack .../128-r-cran-pkgkitten_0.2.3-1_all.deb ... 360s Unpacking r-cran-pkgkitten (0.2.3-1) ... 360s Selecting previously unselected package r-cran-rcpp. 360s Preparing to unpack .../129-r-cran-rcpp_1.0.12-1_arm64.deb ... 360s Unpacking r-cran-rcpp (1.0.12-1) ... 360s Selecting previously unselected package r-cran-wk. 361s Preparing to unpack .../130-r-cran-wk_0.9.1-1_arm64.deb ... 361s Unpacking r-cran-wk (0.9.1-1) ... 361s Selecting previously unselected package r-cran-s2. 361s Preparing to unpack .../131-r-cran-s2_1.1.6-1build2_arm64.deb ... 361s Unpacking r-cran-s2 (1.1.6-1build2) ... 361s Selecting previously unselected package r-cran-units. 361s Preparing to unpack .../132-r-cran-units_0.8-5+dfsg-1_arm64.deb ... 361s Unpacking r-cran-units (0.8-5+dfsg-1) ... 361s Selecting previously unselected package r-cran-sf. 361s Preparing to unpack .../133-r-cran-sf_1.0-16+dfsg-1_arm64.deb ... 361s Unpacking r-cran-sf (1.0-16+dfsg-1) ... 362s Selecting previously unselected package r-cran-areal. 362s Preparing to unpack .../134-r-cran-areal_0.1.8+dfsg-2_all.deb ... 362s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 362s Selecting previously unselected package r-cran-sys. 362s Preparing to unpack .../135-r-cran-sys_3.4.2-1_arm64.deb ... 362s Unpacking r-cran-sys (3.4.2-1) ... 362s Selecting previously unselected package r-cran-askpass. 362s Preparing to unpack .../136-r-cran-askpass_1.2.0-1_arm64.deb ... 362s Unpacking r-cran-askpass (1.2.0-1) ... 362s Selecting previously unselected package r-cran-base64enc. 362s Preparing to unpack .../137-r-cran-base64enc_0.1-3-3_arm64.deb ... 362s Unpacking r-cran-base64enc (0.1-3-3) ... 362s Selecting previously unselected package r-cran-bdsmatrix. 362s Preparing to unpack .../138-r-cran-bdsmatrix_1.3-7-1_arm64.deb ... 362s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 362s Selecting previously unselected package r-cran-brio. 362s Preparing to unpack .../139-r-cran-brio_1.1.5-1_arm64.deb ... 362s Unpacking r-cran-brio (1.1.5-1) ... 363s Selecting previously unselected package r-cran-fastmap. 363s Preparing to unpack .../140-r-cran-fastmap_1.1.1-1_arm64.deb ... 363s Unpacking r-cran-fastmap (1.1.1-1) ... 363s Selecting previously unselected package r-cran-cachem. 363s Preparing to unpack .../141-r-cran-cachem_1.0.8-1_arm64.deb ... 363s Unpacking r-cran-cachem (1.0.8-1) ... 363s Selecting previously unselected package r-cran-digest. 363s Preparing to unpack .../142-r-cran-digest_0.6.35-1_arm64.deb ... 363s Unpacking r-cran-digest (0.6.35-1) ... 363s Selecting previously unselected package r-cran-htmltools. 363s Preparing to unpack .../143-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 363s Unpacking r-cran-htmltools (0.5.8.1-1) ... 363s Selecting previously unselected package r-cran-jquerylib. 363s Preparing to unpack .../144-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 363s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 364s Selecting previously unselected package r-cran-jsonlite. 364s Preparing to unpack .../145-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 364s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 364s Selecting previously unselected package r-cran-memoise. 364s Preparing to unpack .../146-r-cran-memoise_2.0.1-1_all.deb ... 364s Unpacking r-cran-memoise (2.0.1-1) ... 364s Selecting previously unselected package r-cran-mime. 364s Preparing to unpack .../147-r-cran-mime_0.12-2_arm64.deb ... 364s Unpacking r-cran-mime (0.12-2) ... 364s Selecting previously unselected package r-cran-fs. 364s Preparing to unpack .../148-r-cran-fs_1.6.3+dfsg-1build2_arm64.deb ... 364s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ... 364s Selecting previously unselected package r-cran-rappdirs. 364s Preparing to unpack .../149-r-cran-rappdirs_0.3.3-1_arm64.deb ... 364s Unpacking r-cran-rappdirs (0.3.3-1) ... 364s Selecting previously unselected package r-cran-sass. 364s Preparing to unpack .../150-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 364s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 365s Selecting previously unselected package r-cran-bslib. 365s Preparing to unpack .../151-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 365s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 366s Selecting previously unselected package r-cran-cairo. 366s Preparing to unpack .../152-r-cran-cairo_1.6-2-1_arm64.deb ... 366s Unpacking r-cran-cairo (1.6-2-1) ... 366s Selecting previously unselected package r-cran-ps. 366s Preparing to unpack .../153-r-cran-ps_1.7.6-1_arm64.deb ... 366s Unpacking r-cran-ps (1.7.6-1) ... 366s Selecting previously unselected package r-cran-processx. 366s Preparing to unpack .../154-r-cran-processx_3.8.3-1_arm64.deb ... 366s Unpacking r-cran-processx (3.8.3-1) ... 366s Selecting previously unselected package r-cran-callr. 366s Preparing to unpack .../155-r-cran-callr_3.7.6-1_all.deb ... 366s Unpacking r-cran-callr (3.7.6-1) ... 366s Selecting previously unselected package r-cran-cluster. 367s Preparing to unpack .../156-r-cran-cluster_2.1.6-1build1_arm64.deb ... 367s Unpacking r-cran-cluster (2.1.6-1build1) ... 367s Selecting previously unselected package r-cran-clue. 367s Preparing to unpack .../157-r-cran-clue_0.3-65-1_arm64.deb ... 367s Unpacking r-cran-clue (0.3-65-1) ... 367s Selecting previously unselected package r-cran-codetools. 367s Preparing to unpack .../158-r-cran-codetools_0.2-20-1_all.deb ... 367s Unpacking r-cran-codetools (0.2-20-1) ... 367s Selecting previously unselected package r-cran-collapse. 367s Preparing to unpack .../159-r-cran-collapse_2.0.13-1_arm64.deb ... 367s Unpacking r-cran-collapse (2.0.13-1) ... 367s Selecting previously unselected package r-cran-colorspace. 367s Preparing to unpack .../160-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 367s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 368s Selecting previously unselected package r-cran-commonmark. 368s Preparing to unpack .../161-r-cran-commonmark_1.9.1-1_arm64.deb ... 368s Unpacking r-cran-commonmark (1.9.1-1) ... 368s Selecting previously unselected package r-cran-lazyeval. 368s Preparing to unpack .../162-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 368s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 368s Selecting previously unselected package r-cran-rex. 368s Preparing to unpack .../163-r-cran-rex_1.2.1-1_all.deb ... 368s Unpacking r-cran-rex (1.2.1-1) ... 368s Selecting previously unselected package r-cran-curl. 368s Preparing to unpack .../164-r-cran-curl_5.2.0+dfsg-1build2_arm64.deb ... 368s Unpacking r-cran-curl (5.2.0+dfsg-1build2) ... 368s Selecting previously unselected package r-cran-openssl. 368s Preparing to unpack .../165-r-cran-openssl_2.1.1+dfsg-2build2_arm64.deb ... 368s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ... 368s Selecting previously unselected package r-cran-httr. 369s Preparing to unpack .../166-r-cran-httr_1.4.7+dfsg-1_all.deb ... 369s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 369s Selecting previously unselected package r-cran-crayon. 369s Preparing to unpack .../167-r-cran-crayon_1.5.2-1_all.deb ... 369s Unpacking r-cran-crayon (1.5.2-1) ... 369s Selecting previously unselected package r-cran-yaml. 369s Preparing to unpack .../168-r-cran-yaml_2.3.8-2_arm64.deb ... 369s Unpacking r-cran-yaml (2.3.8-2) ... 369s Selecting previously unselected package r-cran-covr. 369s Preparing to unpack .../169-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 369s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 369s Selecting previously unselected package r-cran-cpp11. 369s Preparing to unpack .../170-r-cran-cpp11_0.4.7-1_all.deb ... 369s Unpacking r-cran-cpp11 (0.4.7-1) ... 370s Selecting previously unselected package r-cran-cubelyr. 370s Preparing to unpack .../171-r-cran-cubelyr_1.0.2-1_all.deb ... 370s Unpacking r-cran-cubelyr (1.0.2-1) ... 370s Selecting previously unselected package r-cran-deldir. 370s Preparing to unpack .../172-r-cran-deldir_2.0-4-1build1_arm64.deb ... 370s Unpacking r-cran-deldir (2.0-4-1build1) ... 370s Selecting previously unselected package r-cran-desc. 370s Preparing to unpack .../173-r-cran-desc_1.4.3-1_all.deb ... 370s Unpacking r-cran-desc (1.4.3-1) ... 370s Selecting previously unselected package r-cran-diffobj. 370s Preparing to unpack .../174-r-cran-diffobj_0.3.5-1_arm64.deb ... 370s Unpacking r-cran-diffobj (0.3.5-1) ... 370s Selecting previously unselected package r-cran-evaluate. 371s Preparing to unpack .../175-r-cran-evaluate_0.23-1_all.deb ... 371s Unpacking r-cran-evaluate (0.23-1) ... 371s Selecting previously unselected package r-cran-lattice. 371s Preparing to unpack .../176-r-cran-lattice_0.22-6-1_arm64.deb ... 371s Unpacking r-cran-lattice (0.22-6-1) ... 371s Selecting previously unselected package r-cran-sp. 371s Preparing to unpack .../177-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 371s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 371s Selecting previously unselected package r-cran-terra. 371s Preparing to unpack .../178-r-cran-terra_1.7-65-1build2_arm64.deb ... 371s Unpacking r-cran-terra (1.7-65-1build2) ... 372s Selecting previously unselected package r-cran-raster. 372s Preparing to unpack .../179-r-cran-raster_3.6-26-1_arm64.deb ... 372s Unpacking r-cran-raster (3.6-26-1) ... 372s Selecting previously unselected package r-cran-exactextractr. 372s Preparing to unpack .../180-r-cran-exactextractr_0.10.0-1build2_arm64.deb ... 372s Unpacking r-cran-exactextractr (0.10.0-1build2) ... 372s Selecting previously unselected package r-cran-farver. 372s Preparing to unpack .../181-r-cran-farver_2.1.1-2_arm64.deb ... 372s Unpacking r-cran-farver (2.1.1-2) ... 372s Selecting previously unselected package r-cran-fnn. 372s Preparing to unpack .../182-r-cran-fnn_1.1.4-1_arm64.deb ... 372s Unpacking r-cran-fnn (1.1.4-1) ... 372s Selecting previously unselected package r-cran-fontawesome. 372s Preparing to unpack .../183-r-cran-fontawesome_0.5.2-1_all.deb ... 372s Unpacking r-cran-fontawesome (0.5.2-1) ... 373s Selecting previously unselected package r-cran-formula. 373s Preparing to unpack .../184-r-cran-formula_1.2-5-1_all.deb ... 373s Unpacking r-cran-formula (1.2-5-1) ... 373s Selecting previously unselected package r-cran-globals. 373s Preparing to unpack .../185-r-cran-globals_0.16.3-1_all.deb ... 373s Unpacking r-cran-globals (0.16.3-1) ... 373s Selecting previously unselected package r-cran-listenv. 373s Preparing to unpack .../186-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 373s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 373s Selecting previously unselected package r-cran-parallelly. 373s Preparing to unpack .../187-r-cran-parallelly_1.37.1-1build1_arm64.deb ... 373s Unpacking r-cran-parallelly (1.37.1-1build1) ... 373s Selecting previously unselected package r-cran-future. 373s Preparing to unpack .../188-r-cran-future_1.33.1+dfsg-1_all.deb ... 373s Unpacking r-cran-future (1.33.1+dfsg-1) ... 373s Selecting previously unselected package r-cran-future.apply. 373s Preparing to unpack .../189-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 373s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 374s Selecting previously unselected package r-cran-gtable. 374s Preparing to unpack .../190-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 374s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 374s Selecting previously unselected package r-cran-isoband. 374s Preparing to unpack .../191-r-cran-isoband_0.2.7-1_arm64.deb ... 374s Unpacking r-cran-isoband (0.2.7-1) ... 374s Selecting previously unselected package r-cran-nlme. 374s Preparing to unpack .../192-r-cran-nlme_3.1.164-1build1_arm64.deb ... 374s Unpacking r-cran-nlme (3.1.164-1build1) ... 374s Selecting previously unselected package r-cran-matrix. 374s Preparing to unpack .../193-r-cran-matrix_1.6-5-1_arm64.deb ... 374s Unpacking r-cran-matrix (1.6-5-1) ... 375s Selecting previously unselected package r-cran-mgcv. 375s Preparing to unpack .../194-r-cran-mgcv_1.9-1-1_arm64.deb ... 375s Unpacking r-cran-mgcv (1.9-1-1) ... 375s Selecting previously unselected package r-cran-labeling. 375s Preparing to unpack .../195-r-cran-labeling_0.4.3-1_all.deb ... 375s Unpacking r-cran-labeling (0.4.3-1) ... 375s Selecting previously unselected package r-cran-munsell. 375s Preparing to unpack .../196-r-cran-munsell_0.5.0-2build1_all.deb ... 375s Unpacking r-cran-munsell (0.5.0-2build1) ... 375s Selecting previously unselected package r-cran-rcolorbrewer. 375s Preparing to unpack .../197-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 375s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 375s Selecting previously unselected package r-cran-viridislite. 375s Preparing to unpack .../198-r-cran-viridislite_0.4.2-2_all.deb ... 375s Unpacking r-cran-viridislite (0.4.2-2) ... 375s Selecting previously unselected package r-cran-scales. 375s Preparing to unpack .../199-r-cran-scales_1.3.0-1_all.deb ... 375s Unpacking r-cran-scales (1.3.0-1) ... 376s Selecting previously unselected package r-cran-ggplot2. 376s Preparing to unpack .../200-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 376s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 376s Selecting previously unselected package r-cran-tweenr. 376s Preparing to unpack .../201-r-cran-tweenr_2.0.3-1_arm64.deb ... 376s Unpacking r-cran-tweenr (2.0.3-1) ... 376s Selecting previously unselected package r-cran-polyclip. 377s Preparing to unpack .../202-r-cran-polyclip_1.10-6-1_arm64.deb ... 377s Unpacking r-cran-polyclip (1.10-6-1) ... 377s Selecting previously unselected package r-cran-systemfonts. 377s Preparing to unpack .../203-r-cran-systemfonts_1.0.5-1_arm64.deb ... 377s Unpacking r-cran-systemfonts (1.0.5-1) ... 377s Selecting previously unselected package r-cran-rcppeigen. 377s Preparing to unpack .../204-r-cran-rcppeigen_0.3.4.0.0-1build1_arm64.deb ... 377s Unpacking r-cran-rcppeigen (0.3.4.0.0-1build1) ... 378s Selecting previously unselected package r-cran-ggforce. 378s Preparing to unpack .../205-r-cran-ggforce_0.4.2-1_arm64.deb ... 378s Unpacking r-cran-ggforce (0.4.2-1) ... 378s Selecting previously unselected package r-cran-stringi. 378s Preparing to unpack .../206-r-cran-stringi_1.8.3-1_arm64.deb ... 378s Unpacking r-cran-stringi (1.8.3-1) ... 378s Selecting previously unselected package r-cran-stringr. 378s Preparing to unpack .../207-r-cran-stringr_1.5.1-1_all.deb ... 378s Unpacking r-cran-stringr (1.5.1-1) ... 378s Selecting previously unselected package r-cran-ggthemes. 378s Preparing to unpack .../208-r-cran-ggthemes_5.1.0-1_all.deb ... 378s Unpacking r-cran-ggthemes (5.1.0-1) ... 379s Selecting previously unselected package r-cran-goftest. 379s Preparing to unpack .../209-r-cran-goftest_1.2-3-1_arm64.deb ... 379s Unpacking r-cran-goftest (1.2-3-1) ... 379s Selecting previously unselected package r-cran-gridextra. 379s Preparing to unpack .../210-r-cran-gridextra_2.3-3build1_all.deb ... 379s Unpacking r-cran-gridextra (2.3-3build1) ... 379s Selecting previously unselected package r-cran-zoo. 379s Preparing to unpack .../211-r-cran-zoo_1.8-12-2_arm64.deb ... 379s Unpacking r-cran-zoo (1.8-12-2) ... 379s Selecting previously unselected package r-cran-sftime. 379s Preparing to unpack .../212-r-cran-sftime_0.2-0-6_all.deb ... 379s Unpacking r-cran-sftime (0.2-0-6) ... 379s Selecting previously unselected package r-cran-xts. 379s Preparing to unpack .../213-r-cran-xts_0.13.2-1_arm64.deb ... 379s Unpacking r-cran-xts (0.13.2-1) ... 380s Selecting previously unselected package r-cran-intervals. 380s Preparing to unpack .../214-r-cran-intervals_0.15.4-1_arm64.deb ... 380s Unpacking r-cran-intervals (0.15.4-1) ... 380s Selecting previously unselected package r-cran-spacetime. 380s Preparing to unpack .../215-r-cran-spacetime_1.3-1-1_all.deb ... 380s Unpacking r-cran-spacetime (1.3-1-1) ... 380s Selecting previously unselected package r-cran-stars. 380s Preparing to unpack .../216-r-cran-stars_0.6-4-1_all.deb ... 380s Unpacking r-cran-stars (0.6-4-1) ... 381s Selecting previously unselected package r-cran-gstat. 381s Preparing to unpack .../217-r-cran-gstat_2.1-1-2_arm64.deb ... 381s Unpacking r-cran-gstat (2.1-1-2) ... 381s Selecting previously unselected package r-cran-xfun. 381s Preparing to unpack .../218-r-cran-xfun_0.44+dfsg-1_arm64.deb ... 381s Unpacking r-cran-xfun (0.44+dfsg-1) ... 381s Selecting previously unselected package r-cran-highr. 381s Preparing to unpack .../219-r-cran-highr_0.10+dfsg-2_all.deb ... 381s Unpacking r-cran-highr (0.10+dfsg-2) ... 381s Selecting previously unselected package r-cran-later. 381s Preparing to unpack .../220-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 381s Unpacking r-cran-later (1.3.2+dfsg-1) ... 382s Selecting previously unselected package r-cran-promises. 382s Preparing to unpack .../221-r-cran-promises_1.3.0+dfsg-1_arm64.deb ... 382s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 382s Selecting previously unselected package r-cran-httpuv. 382s Preparing to unpack .../222-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 382s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 382s Selecting previously unselected package libjs-mathjax. 382s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 382s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 387s Selecting previously unselected package r-cran-knitr. 387s Preparing to unpack .../224-r-cran-knitr_1.46+dfsg-1_all.deb ... 387s Unpacking r-cran-knitr (1.46+dfsg-1) ... 387s Selecting previously unselected package r-cran-lmtest. 387s Preparing to unpack .../225-r-cran-lmtest_0.9.40-1_arm64.deb ... 387s Unpacking r-cran-lmtest (0.9.40-1) ... 387s Selecting previously unselected package r-cran-lwgeom. 387s Preparing to unpack .../226-r-cran-lwgeom_0.2-13-3build2_arm64.deb ... 387s Unpacking r-cran-lwgeom (0.2-13-3build2) ... 388s Selecting previously unselected package r-cran-maps. 388s Preparing to unpack .../227-r-cran-maps_3.4.2-1_arm64.deb ... 388s Unpacking r-cran-maps (3.4.2-1) ... 388s Selecting previously unselected package r-cran-mapdata. 388s Preparing to unpack .../228-r-cran-mapdata_2.3.1-1_arm64.deb ... 388s Unpacking r-cran-mapdata (2.3.1-1) ... 389s Selecting previously unselected package r-cran-misctools. 389s Preparing to unpack .../229-r-cran-misctools_0.6-28-1_all.deb ... 389s Unpacking r-cran-misctools (0.6-28-1) ... 390s Selecting previously unselected package r-cran-sandwich. 390s Preparing to unpack .../230-r-cran-sandwich_3.1-0-1_all.deb ... 390s Unpacking r-cran-sandwich (3.1-0-1) ... 390s Selecting previously unselected package r-cran-maxlik. 390s Preparing to unpack .../231-r-cran-maxlik_1.5-2-1_all.deb ... 390s Unpacking r-cran-maxlik (1.5-2-1) ... 390s Selecting previously unselected package r-cran-rnetcdf. 390s Preparing to unpack .../232-r-cran-rnetcdf_2.9-1-1build2_arm64.deb ... 390s Unpacking r-cran-rnetcdf (2.9-1-1build2) ... 390s Selecting previously unselected package r-cran-tidyr. 390s Preparing to unpack .../233-r-cran-tidyr_1.3.1-1_arm64.deb ... 390s Unpacking r-cran-tidyr (1.3.1-1) ... 390s Selecting previously unselected package r-cran-ncmeta. 390s Preparing to unpack .../234-r-cran-ncmeta_0.3.6-1_all.deb ... 390s Unpacking r-cran-ncmeta (0.3.6-1) ... 391s Selecting previously unselected package r-cran-ncdfgeom. 391s Preparing to unpack .../235-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 391s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 391s Selecting previously unselected package r-cran-pbapply. 391s Preparing to unpack .../236-r-cran-pbapply_1.7-2-1_all.deb ... 391s Unpacking r-cran-pbapply (1.7-2-1) ... 391s Selecting previously unselected package r-cran-pcict. 391s Preparing to unpack .../237-r-cran-pcict_0.5-4.4-1_arm64.deb ... 391s Unpacking r-cran-pcict (0.5-4.4-1) ... 391s Selecting previously unselected package r-cran-pkgbuild. 391s Preparing to unpack .../238-r-cran-pkgbuild_1.4.3-1_all.deb ... 391s Unpacking r-cran-pkgbuild (1.4.3-1) ... 391s Selecting previously unselected package r-cran-rprojroot. 391s Preparing to unpack .../239-r-cran-rprojroot_2.0.4-1_all.deb ... 391s Unpacking r-cran-rprojroot (2.0.4-1) ... 392s Selecting previously unselected package r-cran-pkgload. 392s Preparing to unpack .../240-r-cran-pkgload_1.3.4-1_all.deb ... 392s Unpacking r-cran-pkgload (1.3.4-1) ... 392s Selecting previously unselected package r-cran-rbibutils. 392s Preparing to unpack .../241-r-cran-rbibutils_2.2.16-1_arm64.deb ... 392s Unpacking r-cran-rbibutils (2.2.16-1) ... 392s Selecting previously unselected package r-cran-rdpack. 392s Preparing to unpack .../242-r-cran-rdpack_2.6-1_all.deb ... 392s Unpacking r-cran-rdpack (2.6-1) ... 392s Selecting previously unselected package r-cran-plm. 392s Preparing to unpack .../243-r-cran-plm_2.6-4-1_all.deb ... 393s Unpacking r-cran-plm (2.6-4-1) ... 393s Selecting previously unselected package r-cran-praise. 393s Preparing to unpack .../244-r-cran-praise_1.0.0-4build1_all.deb ... 393s Unpacking r-cran-praise (1.0.0-4build1) ... 393s Selecting previously unselected package r-cran-randomforest. 393s Preparing to unpack .../245-r-cran-randomforest_4.7-1.1-1_arm64.deb ... 393s Unpacking r-cran-randomforest (4.7-1.1-1) ... 393s Selecting previously unselected package r-cran-rematch2. 393s Preparing to unpack .../246-r-cran-rematch2_2.1.2-2build1_all.deb ... 393s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 393s Selecting previously unselected package r-cran-tinytex. 393s Preparing to unpack .../247-r-cran-tinytex_0.49-1_all.deb ... 393s Unpacking r-cran-tinytex (0.49-1) ... 393s Selecting previously unselected package libjs-modernizr. 393s Preparing to unpack .../248-libjs-modernizr_3.13.0-0.1_all.deb ... 393s Unpacking libjs-modernizr (3.13.0-0.1) ... 394s Selecting previously unselected package r-cran-xtable. 394s Preparing to unpack .../249-r-cran-xtable_1%3a1.8-4-2_all.deb ... 394s Unpacking r-cran-xtable (1:1.8-4-2) ... 394s Selecting previously unselected package r-cran-sourcetools. 394s Preparing to unpack .../250-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 394s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 394s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 394s Preparing to unpack .../251-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 394s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 394s Selecting previously unselected package r-cran-shiny. 394s Preparing to unpack .../252-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ... 394s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ... 395s Selecting previously unselected package r-cran-rmarkdown. 395s Preparing to unpack .../253-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 395s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 396s Selecting previously unselected package r-cran-survival. 396s Preparing to unpack .../254-r-cran-survival_3.5-8-1_arm64.deb ... 396s Unpacking r-cran-survival (3.5-8-1) ... 396s Selecting previously unselected package r-cran-rpart. 396s Preparing to unpack .../255-r-cran-rpart_4.1.23-1build1_arm64.deb ... 396s Unpacking r-cran-rpart (4.1.23-1build1) ... 396s Selecting previously unselected package r-cran-spatstat.utils. 396s Preparing to unpack .../256-r-cran-spatstat.utils_3.0-4-1_arm64.deb ... 396s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 396s Selecting previously unselected package r-cran-spatstat.data. 396s Preparing to unpack .../257-r-cran-spatstat.data_3.0-4-1_all.deb ... 396s Unpacking r-cran-spatstat.data (3.0-4-1) ... 396s Selecting previously unselected package r-cran-spatstat.geom. 397s Preparing to unpack .../258-r-cran-spatstat.geom_3.2-9-1_arm64.deb ... 397s Unpacking r-cran-spatstat.geom (3.2-9-1) ... 397s Selecting previously unselected package r-cran-spatstat.random. 397s Preparing to unpack .../259-r-cran-spatstat.random_3.2-3-1_arm64.deb ... 397s Unpacking r-cran-spatstat.random (3.2-3-1) ... 397s Selecting previously unselected package r-cran-tensor. 397s Preparing to unpack .../260-r-cran-tensor_1.5-4_all.deb ... 397s Unpacking r-cran-tensor (1.5-4) ... 397s Selecting previously unselected package r-cran-spatstat.sparse. 397s Preparing to unpack .../261-r-cran-spatstat.sparse_3.0-3-1_arm64.deb ... 397s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 397s Selecting previously unselected package r-cran-spatstat.explore. 397s Preparing to unpack .../262-r-cran-spatstat.explore_3.2-5-1_arm64.deb ... 397s Unpacking r-cran-spatstat.explore (3.2-5-1) ... 397s Selecting previously unselected package r-cran-spatstat.model. 398s Preparing to 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(2.1-0+dfsg-1) ... 407s Setting up r-cran-parallelly (1.37.1-1build1) ... 407s Setting up r-cran-stringi (1.8.3-1) ... 407s Setting up r-cran-rex (1.2.1-1) ... 407s Setting up r-cran-cpp11 (0.4.7-1) ... 407s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 407s Setting up r-cran-isoband (0.2.7-1) ... 407s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 407s Setting up r-cran-terra (1.7-65-1build2) ... 407s Setting up r-cran-zoo (1.8-12-2) ... 407s Setting up r-cran-units (0.8-5+dfsg-1) ... 407s Setting up r-cran-later (1.3.2+dfsg-1) ... 407s Setting up r-cran-matrix (1.6-5-1) ... 407s Setting up r-cran-spatstat.sparse (3.0-3-1) ... 407s Setting up r-cran-htmltools (0.5.8.1-1) ... 407s Setting up r-cran-tinytex (0.49-1) ... 407s Setting up r-cran-kernsmooth (2.23-24-1) ... 407s Setting up r-cran-knitr (1.46+dfsg-1) ... 407s Setting up r-cran-mgcv (1.9-1-1) ... 407s Setting up r-cran-cachem (1.0.8-1) ... 407s Setting up r-cran-lmtest (0.9.40-1) ... 407s Setting up r-cran-sass (0.4.9+dfsg-1) ... 407s Setting up r-cran-globals (0.16.3-1) ... 407s Setting up r-cran-vctrs (0.6.5-1) ... 407s Setting up r-cran-rcppeigen (0.3.4.0.0-1build1) ... 407s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 407s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ... 407s Setting up r-cran-misctools (0.6-28-1) ... 407s Setting up r-cran-stringr (1.5.1-1) ... 407s Setting up r-cran-class (7.3-22-2build1) ... 407s Setting up r-cran-callr (3.7.6-1) ... 407s Setting up r-cran-desc (1.4.3-1) ... 407s Setting up r-cran-munsell (0.5.0-2build1) ... 407s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 407s Setting up r-cran-sandwich (3.1-0-1) ... 407s Setting up r-cran-fontawesome (0.5.2-1) ... 407s Setting up r-cran-survival (3.5-8-1) ... 407s Setting up r-cran-xts (0.13.2-1) ... 407s Setting up r-cran-rdpack (2.6-1) ... 407s Setting up r-cran-tweenr (2.0.3-1) ... 407s Setting up r-cran-future (1.33.1+dfsg-1) ... 407s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 407s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 407s Setting up r-cran-future.apply (1.11.2+dfsg-1) ... 407s Setting up r-cran-raster (3.6-26-1) ... 407s Setting up r-cran-systemfonts (1.0.5-1) ... 407s Setting up r-cran-httr (1.4.7+dfsg-1) ... 407s Setting up r-cran-gridextra (2.3-3build1) ... 407s Setting up r-cran-scales (1.3.0-1) ... 407s Setting up r-cran-memoise (2.0.1-1) ... 407s Setting up r-cran-covr (3.6.4+dfsg-1) ... 407s Setting up r-cran-promises (1.3.0+dfsg-1) ... 407s Setting up r-cran-purrr (1.0.2-1) ... 407s Setting up r-cran-e1071 (1.7-14-1) ... 407s Setting up r-cran-spatstat.data (3.0-4-1) ... 407s Setting up r-cran-maxlik (1.5-2-1) ... 407s Setting up r-cran-spacetime (1.3-1-1) ... 407s Setting up r-cran-spatstat.geom (3.2-9-1) ... 407s Setting up r-cran-pkgbuild (1.4.3-1) ... 407s Setting up r-cran-dplyr (1.1.4-1) ... 407s Setting up r-cran-cubelyr (1.0.2-1) ... 407s Setting up r-cran-pkgload (1.3.4-1) ... 407s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 407s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 407s Setting up r-cran-rematch2 (2.1.2-2build1) ... 407s Setting up r-cran-rpart (4.1.23-1build1) ... 407s Setting up r-cran-spatstat.random (3.2-3-1) ... 407s Setting up r-cran-plm (2.6-4-1) ... 407s Setting up r-cran-viridis (0.6.5-1) ... 407s Setting up r-cran-classint (0.4-10+dfsg-1) ... 407s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 407s Setting up r-cran-spatstat.explore (3.2-5-1) ... 407s Setting up r-cran-ggthemes (5.1.0-1) ... 407s Setting up r-cran-waldo (0.5.2-1build1) ... 407s Setting up r-cran-tidyr (1.3.1-1) ... 407s Setting up r-cran-sf (1.0-16+dfsg-1) ... 407s Setting up r-cran-exactextractr (0.10.0-1build2) ... 407s Setting up r-cran-stars (0.6-4-1) ... 407s Setting up r-cran-ggforce (0.4.2-1) ... 408s Setting up r-cran-sftime (0.2-0-6) ... 408s Setting up r-cran-spatstat.model (3.2-11-1) ... 408s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... 408s Setting up r-cran-areal (0.1.8+dfsg-2) ... 408s Setting up r-cran-gstat (2.1-1-2) ... 408s Setting up r-cran-testthat (3.2.1-1) ... 408s Setting up r-cran-lwgeom (0.2-13-3build2) ... 408s Setting up r-cran-ncmeta (0.3.6-1) ... 408s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 408s Setting up r-cran-spatstat.linnet (3.1-5-1) ... 408s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 408s Setting up r-cran-spatstat (3.0-7-1) ... 408s Setting up autopkgtest-satdep (0) ... 408s Processing triggers for man-db (2.12.1-1) ... 410s Processing triggers for install-info (7.1-3build2) ... 411s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 449s (Reading database ... 102722 files and directories currently installed.) 449s Removing autopkgtest-satdep (0) ... 450s autopkgtest [09:34:09]: test run-unit-test: [----------------------- 450s BEGIN TEST aggregate.R 450s 450s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 450s Copyright (C) 2024 The R Foundation for Statistical Computing 450s Platform: aarch64-unknown-linux-gnu 450s 450s R is free software and comes with ABSOLUTELY NO WARRANTY. 450s You are welcome to redistribute it under certain conditions. 450s Type 'license()' or 'licence()' for distribution details. 450s 450s R is a collaborative project with many contributors. 450s Type 'contributors()' for more information and 450s 'citation()' on how to cite R or R packages in publications. 450s 450s Type 'demo()' for some demos, 'help()' for on-line help, or 450s 'help.start()' for an HTML browser interface to help. 450s Type 'q()' to quit R. 450s 451s > library(stars) 451s Loading required package: abind 451s Loading required package: sf 452s Linking to GEOS 3.12.1, GDAL 3.8.5, PROJ 9.4.0; sf_use_s2() is TRUE 453s > 453s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 453s + data(air) # this loads several datasets in .GlobalEnv 453s + dim(air) 453s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 453s + 453s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 453s + n = c(3,3)) 453s + 453s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 453s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 453s + } 456s stars object with 2 dimensions and 1 attribute 456s attribute(s): 456s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 456s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 456s dimension(s): 456s from to offset delta refsys point 456s station 1 70 NA NA WGS 84 TRUE 456s time 1 4383 1998-01-01 1 days Date FALSE 456s values 456s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 456s time NULL 457s stars object with 2 dimensions and 1 attribute 457s attribute(s): 457s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 457s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 457s dimension(s): 458s from to offset delta refsys point 458s geometry 1 9 NA NA WGS 84 FALSE 458s time 1 4383 1998-01-01 1 days Date FALSE 458s values 458s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 458s time NULL 458s > 458s > # adapted from ?read_stars: 458s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 458s > st = st_as_stars(m) 458s > attr(st, "dimensions")$y$delta = -1 458s > attr(st, "dimensions")$y$offset = 12 458s > tm = as.Date("2019-02-19") + 1:6 458s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 458s > 458s > tmp = tempfile(fileext = ".tif") 458s > write_stars(st, tmp) 458s > 458s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 458s + nBufXSize = 2, nBufYSize = 2)), "foo")) 458s stars object with 3 dimensions and 1 attribute 458s attribute(s): 458s Min. 1st Qu. Median Mean 3rd Qu. Max. 458s foo 33 199.25 365.5 365.5 531.75 698 458s dimension(s): 458s from to offset delta refsys point x/y 458s x 1 2 0 5 WGS 84 FALSE [x] 458s y 1 2 12 -6 WGS 84 FALSE [y] 458s band 1 6 NA NA NA NA 458s > 458s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 458s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 458s stars object with 2 dimensions and 1 attribute 458s attribute(s): 458s Min. 1st Qu. Median Mean 3rd Qu. Max. 458s A1 28 194.25 360.5 360.5 526.75 693 458s dimension(s): 458s from to offset delta refsys point 458s geom 1 4 NA NA WGS 84 FALSE 458s t 1 6 2019-02-20 1 days Date FALSE 458s values 458s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 458s t NULL 458s > (a = aggregate(st, sfc, mean)) 458s stars object with 2 dimensions and 1 attribute 458s attribute(s): 458s Min. 1st Qu. Median Mean 3rd Qu. Max. 458s A1 28 194.25 360.5 360.5 526.75 693 458s dimension(s): 458s from to offset delta refsys point 458s geometry 1 4 NA NA WGS 84 FALSE 458s t 1 6 2019-02-20 1 days Date FALSE 458s values 458s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 458s t NULL 458s > 458s > tm0 = as.Date("2019-02-19") + -1:8 458s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 458s stars object with 3 dimensions and 1 attribute 458s attribute(s): 458s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 458s A1 1 180.75 360.5 360.5 540.25 720 480 458s dimension(s): 458s from to offset delta refsys point x/y 458s time 1 10 2019-02-18 1 days Date NA 458s x 1 10 0 1 WGS 84 FALSE [x] 458s y 1 12 12 -1 WGS 84 FALSE [y] 458s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 458s stars object with 3 dimensions and 1 attribute 458s attribute(s): 458s Min. 1st Qu. Median Mean 3rd Qu. Max. 458s A1 1 180.75 360.5 360.5 540.25 720 458s dimension(s): 458s from to offset delta refsys point x/y 458s time 1 6 2019-02-20 1 days Date NA 458s x 1 10 0 1 WGS 84 FALSE [x] 458s y 1 12 12 -1 WGS 84 FALSE [y] 458s > yd = function(x) as.POSIXlt(x)$yday 458s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 458s stars object with 3 dimensions and 1 attribute 458s attribute(s): 458s Min. 1st Qu. Median Mean 3rd Qu. Max. 458s A1 1 180.75 360.5 360.5 540.25 720 458s dimension(s): 458s from to offset delta refsys point values x/y 458s geometry 1 6 NA NA NA NA 50,...,55 458s x 1 10 0 1 WGS 84 FALSE NULL [x] 458s y 1 12 12 -1 WGS 84 FALSE NULL [y] 458s > 458s > # with "by" geometry not overlapping x 458s > pt = st_point(c(-10,-10)) 458s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 458s Geometry set for 5 features 458s Geometry type: GEOMETRY 458s Dimension: XY 458s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 458s Geodetic CRS: WGS 84 458s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 458s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 458s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 458s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 458s POINT (-10 -10) 458s > (a = aggregate(st, sfc, mean)) 458s stars object with 2 dimensions and 1 attribute 458s attribute(s): 458s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 458s A1 28 194.25 360.5 360.5 526.75 693 6 458s dimension(s): 458s from to offset delta refsys point 458s geometry 1 5 NA NA WGS 84 FALSE 458s t 1 6 2019-02-20 1 days Date FALSE 458s values 458s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 458s t NULL 458s > (a = aggregate(st, st, mean)) 459s stars object with 2 dimensions and 1 attribute 459s attribute(s): 459s Min. 1st Qu. Median Mean 3rd Qu. Max. 459s A1 1 180.75 360.5 360.5 540.25 720 459s dimension(s): 459s from to offset delta refsys point 459s geometry 1 120 NA NA WGS 84 FALSE 459s t 1 6 2019-02-20 1 days Date FALSE 459s values 459s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 459s t NULL 459s > 459s BEGIN TEST align.R 459s 459s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 459s Copyright (C) 2024 The R Foundation for Statistical Computing 459s Platform: aarch64-unknown-linux-gnu 459s 459s R is free software and comes with ABSOLUTELY NO WARRANTY. 459s You are welcome to redistribute it under certain conditions. 459s Type 'license()' or 'licence()' for distribution details. 459s 459s R is a collaborative project with many contributors. 459s Type 'contributors()' for more information and 459s 'citation()' on how to cite R or R packages in publications. 459s 459s Type 'demo()' for some demos, 'help()' for on-line help, or 459s 'help.start()' for an HTML browser interface to help. 459s Type 'q()' to quit R. 459s 459s > suppressPackageStartupMessages(library(stars)) 462s > set.seed(1331) 462s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 462s Geometry set for 1 feature 462s Geometry type: POINT 462s Dimension: XY 462s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 462s Projected CRS: SIRGAS 2000 / UTM zone 25S 462s POINT (291430.8 9111430) 462s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 462s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 462s > 462s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 463s > plot(b, add = TRUE, col = NA, border = 'red') 463s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 463s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 463s > st_bbox(b) 463s xmin ymin xmax ymax 463s 297116.8 9119404.1 297786.8 9120074.1 463s > bba 463s xmin ymin xmax ymax 463s 297098.3 9119392.8 297810.8 9120076.8 463s > 463s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 463s > plot(b, col = 'red', add = TRUE) 463s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 463s > 463s > b0 = st_buffer(b, -100) 463s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 463s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 463s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 463s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 463s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 463s > plot(b, col = NA, border = 'red', add = TRUE) 463s > 463s > all.equal(bbb, bba) 463s [1] TRUE 463s > 463s BEGIN TEST area.R 464s 464s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 464s Copyright (C) 2024 The R Foundation for Statistical Computing 464s Platform: aarch64-unknown-linux-gnu 464s 464s R is free software and comes with ABSOLUTELY NO WARRANTY. 464s You are welcome to redistribute it under certain conditions. 464s Type 'license()' or 'licence()' for distribution details. 464s 464s R is a collaborative project with many contributors. 464s Type 'contributors()' for more information and 464s 'citation()' on how to cite R or R packages in publications. 464s 464s Type 'demo()' for some demos, 'help()' for on-line help, or 464s 'help.start()' for an HTML browser interface to help. 464s Type 'q()' to quit R. 464s 464s > suppressPackageStartupMessages(library(stars)) 466s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 466s > x = read_stars(tif) 466s > (a = st_area(x[,1:5,1:5])) 466s stars object with 2 dimensions and 1 attribute 466s attribute(s): 466s Min. 1st Qu. Median Mean 3rd Qu. Max. 466s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 466s dimension(s): 467s from to offset delta refsys point x/y 467s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 467s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 467s > 467s > m = matrix(1:20, nrow = 5, ncol = 4) 467s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 467s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 467s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 467s stars object with 2 dimensions and 1 attribute 467s attribute(s): 467s Missing coordinate reference system: assuming Cartesian coordinates 467s Min. 1st Qu. Median Mean 3rd Qu. Max. 467s m 1 5.75 10.5 10.5 15.25 20 467s dimension(s): 467s from to point values x/y 467s x 1 5 FALSE [0,0.5),...,[4,5) [x] 467s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 467s > # image(r, axes = TRUE, col = grey((1:20)/20)) 467s > (a = st_area(r)) 467s stars object with 2 dimensions and 1 attribute 467s attribute(s): 467s Min. 1st Qu. Median Mean 3rd Qu. Max. 467s area 0.1 0.2 0.325 0.475 0.5 2 467s dimension(s): 467s from to point values x/y 467s x 1 5 FALSE [0,0.5),...,[4,5) [x] 467s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 467s > #plot(a, axes = TRUE) 467s > 467s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 467s > if (s5p != "") { 467s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 467s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 467s + if (inherits(nit.c[[1]], "units")) 467s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 467s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 467s + st_crs(nit.c) = 4326 467s + print((a <- st_area(nit.c[,1:5,1:5]))) 467s + # plot(a, axes = TRUE, border = NA) 467s + } 467s > 467s BEGIN TEST crop.R 467s 467s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 467s Copyright (C) 2024 The R Foundation for Statistical Computing 467s Platform: aarch64-unknown-linux-gnu 467s 467s R is free software and comes with ABSOLUTELY NO WARRANTY. 467s You are welcome to redistribute it under certain conditions. 467s Type 'license()' or 'licence()' for distribution details. 467s 467s R is a collaborative project with many contributors. 467s Type 'contributors()' for more information and 467s 'citation()' on how to cite R or R packages in publications. 467s 467s Type 'demo()' for some demos, 'help()' for on-line help, or 467s 'help.start()' for an HTML browser interface to help. 467s Type 'q()' to quit R. 467s 467s > suppressPackageStartupMessages(library(stars)) 470s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 470s > x = read_stars(tif) 470s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 470s + 9111328.49619133)), .Names = c("x", "y")) 470s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 470s > image(x, axes = TRUE) 470s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 470s > 470s > bb = st_bbox(pts) 470s > (xx = x[bb]) 470s stars object with 3 dimensions and 1 attribute 470s attribute(s): 470s Min. 1st Qu. Median Mean 3rd Qu. Max. 470s L7_ETMs.tif 3 56 73 70.87303 89 255 470s dimension(s): 471s from to offset delta refsys point x/y 471s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 471s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 471s band 1 6 NA NA NA NA 471s > image(xx) 471s > plot(st_as_sfc(bb), add = TRUE, col = NA) 471s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 471s Sparse geometry binary predicate list of length 1, where the predicate 471s was `contains' 471s 1: 1 471s > 471s > image(x) 471s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 471s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 471s > plot(buf, add = TRUE) 471s > 471s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 471s + crs = st_crs(x)) 471s > image(x[buf]) 471s > plot(buf, add = TRUE, col = NA) 471s > image(x[buf,crop=FALSE]) 474s > plot(buf, add = TRUE, col = NA) 474s > 474s > plot(x, rgb = 1:3) 474s > 474s > # #638: 474s > l = st_as_stars(L7_ETMs) 474s > st_bbox(l) |> st_as_sfc() -> bb 474s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 474s > st_crop(l, b) 477s stars object with 3 dimensions and 1 attribute 477s attribute(s): 477s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 477s L7_ETMs NA NA NA NaN NA NA 737088 477s dimension(s): 477s from to offset delta refsys point x/y 477s x 1Warning message: 477s 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 477s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 477s band 1 6 NA NA NA NA 477s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 477s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 477s [,1] 477s [1,] FALSE 477s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 477s > st_crop(l, b) 479s stars object with 3 dimensions and 1 attribute 479s attribute(s): 480s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 480s L7_ETMs NA NA NA NaN NA NA 737088 480s dimension(s): 480s from to offset deltaWarning message: 480s refsys point x/y 480s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 480s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 480s band 1 6 NA NA NA NA 480s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 480s > 480s BEGIN TEST curvilinear.R 480s 480s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 480s Copyright (C) 2024 The R Foundation for Statistical Computing 480s Platform: aarch64-unknown-linux-gnu 480s 480s R is free software and comes with ABSOLUTELY NO WARRANTY. 480s You are welcome to redistribute it under certain conditions. 480s Type 'license()' or 'licence()' for distribution details. 480s 480s R is a collaborative project with many contributors. 480s Type 'contributors()' for more information and 480s 'citation()' on how to cite R or R packages in publications. 480s 480s Type 'demo()' for some demos, 'help()' for on-line help, or 480s 'help.start()' for an HTML browser interface to help. 480s Type 'q()' to quit R. 480s 480s > suppressPackageStartupMessages(library(stars)) 483s > 483s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 483s > if (s5p != "") { 483s + 483s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 483s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 483s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 483s + lat = read_stars(lat_ds) 483s + lon = read_stars(lon_ds) 483s + nit = read_stars(nit_ds) 483s + nit[[1]][nit[[1]] > 9e+36] = NA 483s + 483s + ll = setNames(c(lon, lat), c("x", "y")) 483s + nit.c0 = st_as_stars(nit, curvilinear = ll) 483s + 483s + # more direct method: 483s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 483s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 483s + if (inherits(nit.c[[1]], "units")) 483s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 483s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 483s + all.equal(nit.c0, nit.c) 483s + st_crs(nit.c) = 4326 483s + print(nit.c) 483s + 483s + if (FALSE && capabilities()["png"]) { 483s + png("nit1.png", 800, 800) 483s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 483s + maps::map('world', add = TRUE, col = 'red') 483s + dev.off() 483s + 483s + png("nit2.png", 800, 800) 483s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 483s + maps::map('world', add = TRUE, col = 'red') 483s + dev.off() 483s + 483s + nit.c = stars:::st_downsample(nit.c, 8) 483s + print(nit.c) 483s + 483s + png("nit3.png", 800, 800) 483s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 483s + maps::map('world', add = TRUE, col = 'red') 483s + dev.off() 483s + 483s + png("nit4.png", 800, 800) 483s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 483s + maps::map('world', add = TRUE, col = 'red') 483s + dev.off() 483s + } 483s + 483s + } 483s > 483s BEGIN TEST datasets.R 483s 483s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 483s Copyright (C) 2024 The R Foundation for Statistical Computing 483s Platform: aarch64-unknown-linux-gnu 483s 483s R is free software and comes with ABSOLUTELY NO WARRANTY. 483s You are welcome to redistribute it under certain conditions. 483s Type 'license()' or 'licence()' for distribution details. 483s 483s R is a collaborative project with many contributors. 483s Type 'contributors()' for more information and 483s 'citation()' on how to cite R or R packages in publications. 483s 483s Type 'demo()' for some demos, 'help()' for on-line help, or 483s 'help.start()' for an HTML browser interface to help. 483s Type 'q()' to quit R. 483s 483s > suppressPackageStartupMessages(library(stars)) 486s > bcsd_obs 486s stars_proxy object with 2 attributes in 2 file(s): 486s $foo 486s [1] "[...]/bcsd_obs_1999.nc:pr" 486s 486s $bar 486s [1] "[...]/bcsd_obs_1999.nc:tas" 486s 486s dimension(s): 486s from to offset delta refsys values x/y 486s x 1 81 -85 0.125 NA NULL [x] 486s y 1 33 37.12 -0.125 NA NULL [y] 486s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 486s > L7_ETMs 486s stars_proxy object with 1 attribute in 1 file(s): 486s $L7_ETMs 486s [1] "[...]/L7_ETMs.tif" 486s 486s dimension(s): 486s from to offset delta refsys point x/y 486s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 486s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 486s band 1 6 NA NA NA NA 486s > if (require(starsdata, quietly = TRUE)) { 486s + print(stars_sentinel2) 486s + } 486s > 486s BEGIN TEST dimensions.R 487s 487s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 487s Copyright (C) 2024 The R Foundation for Statistical Computing 487s Platform: aarch64-unknown-linux-gnu 487s 487s R is free software and comes with ABSOLUTELY NO WARRANTY. 487s You are welcome to redistribute it under certain conditions. 487s Type 'license()' or 'licence()' for distribution details. 487s 487s R is a collaborative project with many contributors. 487s Type 'contributors()' for more information and 487s 'citation()' on how to cite R or R packages in publications. 487s 487s Type 'demo()' for some demos, 'help()' for on-line help, or 487s 'help.start()' for an HTML browser interface to help. 487s Type 'q()' to quit R. 487s 487s > # https://github.com/r-spatial/stars/issues/295 487s > suppressPackageStartupMessages(library(stars)) 490s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 490s pr, tas, 490s > foo <- function(x, idx) stats::lowess(idx, x)$y 490s > 490s > timeline <- st_get_dimension_values(raw, "time") 490s > smooth = st_apply(raw, 490s + MARGIN = c("x", "y"), 490s + FUN = foo, 490s + idx = st_get_dimension_values(raw, "time") 490s + ) 492s > 492s > st_set_dimensions(smooth, 492s + which = "foo", 492s + values = st_get_dimension_values(raw, "time"), 492s + names = "time" 492s + ) 493s stars object with 3 dimensions and 2 attributes 493s attribute(s): 493s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 493s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 493s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 493s dimension(s): 493s from to offset delta refsys values x/y 493s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 493s x 1 81 -85 0.125 NA NULL [x] 493s y 1 33 37.12 -0.125 NA NULL [y] 493s > 493s > raw %>% 493s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 493s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 495s stars object with 3 dimensions and 2 attributes 495s attribute(s): 495s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 495s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 495s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 495s dimension(s): 495s from to offset delta refsys values x/y 495s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 495s x 1 81 -85 0.125 NA NULL [x] 495s y 1 33 37.12 -0.125 NA NULL [y] 495s > 495s BEGIN TEST downsample.R 495s 495s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 495s Copyright (C) 2024 The R Foundation for Statistical Computing 495s Platform: aarch64-unknown-linux-gnu 495s 495s R is free software and comes with ABSOLUTELY NO WARRANTY. 495s You are welcome to redistribute it under certain conditions. 495s Type 'license()' or 'licence()' for distribution details. 495s 495s R is a collaborative project with many contributors. 495s Type 'contributors()' for more information and 495s 'citation()' on how to cite R or R packages in publications. 495s 495s Type 'demo()' for some demos, 'help()' for on-line help, or 495s 'help.start()' for an HTML browser interface to help. 495s Type 'q()' to quit R. 495s 496s > library(stars) 496s Loading required package: abind 496s Loading required package: sf 497s Linking to GEOS 3.12.1, GDAL 3.8.5, PROJ 9.4.0; sf_use_s2() is TRUE 498s > m = matrix(1:121, 11, 11) 498s > m 498s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 498s [1,] 1 12 23 34 45 56 67 78 89 100 111 498s [2,] 2 13 24 35 46 57 68 79 90 101 112 498s [3,] 3 14 25 36 47 58 69 80 91 102 113 498s [4,] 4 15 26 37 48 59 70 81 92 103 114 498s [5,] 5 16 27 38 49 60 71 82 93 104 115 498s [6,] 6 17 28 39 50 61 72 83 94 105 116 498s [7,] 7 18 29 40 51 62 73 84 95 106 117 498s [8,] 8 19 30 41 52 63 74 85 96 107 118 498s [9,] 9 20 31 42 53 64 75 86 97 108 119 498s [10,] 10 21 32 43 54 65 76 87 98 109 120 498s [11,] 11 22 33 44 55 66 77 88 99 110 121 498s > s = st_as_stars(m) 498s > st_downsample(s, 1) 498s stars object with 2 dimensions and 1 attribute 498s attribute(s): 498s Min. 1st Qu. Median Mean 3rd Qu. Max. 498s A1 1 28.5 61 61 93.5 121 498s dimension(s): 498s from to offset delta point x/y 498s X1 1 6 0 2 FALSE [x] 498s X2 1 6 0 2 FALSE [y] 498s > st_downsample(s, 1)[[1]] 498s [,1] [,2] [,3] [,4] [,5] [,6] 498s [1,] 1 23 45 67 89 111 498s [2,] 3 25 47 69 91 113 498s [3,] 5 27 49 71 93 115 498s [4,] 7 29 51 73 95 117 498s [5,] 9 31 53 75 97 119 498s [6,] 11 33 55 77 99 121 498s > st_downsample(s, 1, offset = 1) 498s stars object with 2 dimensions and 1 attribute 498s attribute(s): 498s Min. 1st Qu. Median Mean 3rd Qu. Max. 498s A1 13 37 61 61 85 109 498s dimension(s): 498s from to offset delta point x/y 498s X1 1 5 1 2 FALSE [x] 498s X2 1 5 1 2 FALSE [y] 498s > st_downsample(s, 1, offset = 1)[[1]] 498s [,1] [,2] [,3] [,4] [,5] 498s [1,] 13 35 57 79 101 498s [2,] 15 37 59 81 103 498s [3,] 17 39 61 83 105 498s [4,] 19 41 63 85 107 498s [5,] 21 43 65 87 109 498s > st_downsample(s, 1, FUN = mean) 498s stars object with 2 dimensions and 1 attribute 498s attribute(s): 498s Min. 1st Qu. Median Mean 3rd Qu. Max. 498s A1 7 31 55 55 79 103 498s dimension(s): 499s from to offset delta point x/y 499s X1 1 5 0 2 FALSE [x] 499s X2 1 5 0 2 FALSE [y] 499s > st_downsample(s, 1, FUN = mean)[[1]] 499s [,1] [,2] [,3] [,4] [,5] 499s [1,] 7 29 51 73 95 499s [2,] 9 31 53 75 97 499s [3,] 11 33 55 77 99 499s [4,] 13 35 57 79 101 499s [5,] 15 37 59 81 103 499s > st_downsample(s, 1, offset = 1, FUN = mean) 499s stars object with 2 dimensions and 1 attribute 499s attribute(s): 499s Min. 1st Qu. Median Mean 3rd Qu. Max. 499s A1 19 43 67 67 91 115 499s dimension(s): 499s from to offset delta point x/y 499s X1 1 5 1 2 FALSE [x] 499s X2 1 5 1 2 FALSE [y] 499s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 499s [,1] [,2] [,3] [,4] [,5] 499s [1,] 18 40 62 84 106 499s [2,] 20 42 64 86 108 499s [3,] 22 44 66 88 110 499s [4,] 24 46 68 90 112 499s [5,] 26 48 70 92 114 499s > st_downsample(s, 1, offset = c(0,1)) 499s stars object with 2 dimensions and 1 attribute 499s attribute(s): 499s Min. 1st Qu. Median Mean 3rd Qu. Max. 499s A1 12 36.5 61 61 85.5 110 499s dimension(s): 499s from to offset delta point x/y 499s X1 1 6 0 2 FALSE [x] 499s X2 1 5 1 2 FALSE [y] 499s > st_downsample(s, 1, offset = c(0,1))[[1]] 499s [,1] [,2] [,3] [,4] [,5] 499s [1,] 12 34 56 78 100 499s [2,] 14 36 58 80 102 499s [3,] 16 38 60 82 104 499s [4,] 18 40 62 84 106 499s [5,] 20 42 64 86 108 499s [6,] 22 44 66 88 110 499s > 499s BEGIN TEST ee.R 499s 499s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 499s Copyright (C) 2024 The R Foundation for Statistical Computing 499s Platform: aarch64-unknown-linux-gnu 499s 499s R is free software and comes with ABSOLUTELY NO WARRANTY. 499s You are welcome to redistribute it under certain conditions. 499s Type 'license()' or 'licence()' for distribution details. 499s 499s R is a collaborative project with many contributors. 499s Type 'contributors()' for more information and 499s 'citation()' on how to cite R or R packages in publications. 499s 499s Type 'demo()' for some demos, 'help()' for on-line help, or 499s 'help.start()' for an HTML browser interface to help. 499s Type 'q()' to quit R. 499s 499s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 499s > options(digits=15) 499s > suppressPackageStartupMessages(library(stars)) 502s > L = st_as_stars(L7_ETMs)[,,,1] 502s > set.seed(123432) 502s > st_bbox(L) |> 502s + st_as_sfc() |> 502s + st_centroid() |> 502s + st_buffer(50) |> 502s + st_sample(10) |> 502s + st_combine() |> 502s + st_convex_hull() -> ch 503s > if (interactive()) { 503s + plot(L, reset = FALSE) 503s + plot(ch, add = TRUE, border = 'red', col = NA) 503s + } 503s > if (FALSE) { 503s + e = st_extract(L, ch)[[1]] 503s + a = aggregate(L, ch, mean)[[1]] 503s + identical(e, a) # same code path 503s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 503s + all.equal(e, ee) 503s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 503s + all.equal(as.vector(ee), aw) 503s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 503s + all.equal(ee0, ee) # ?? 503s + } 503s > 503s BEGIN TEST extract.R 503s 503s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 503s Copyright (C) 2024 The R Foundation for Statistical Computing 503s Platform: aarch64-unknown-linux-gnu 503s 503s R is free software and comes with ABSOLUTELY NO WARRANTY. 503s You are welcome to redistribute it under certain conditions. 503s Type 'license()' or 'licence()' for distribution details. 503s 503s R is a collaborative project with many contributors. 503s Type 'contributors()' for more information and 503s 'citation()' on how to cite R or R packages in publications. 503s 503s Type 'demo()' for some demos, 'help()' for on-line help, or 503s 'help.start()' for an HTML browser interface to help. 503s Type 'q()' to quit R. 503s 504s > # Create 'stars' object 504s > set.seed(1331) 504s > suppressPackageStartupMessages(library(stars)) 506s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 506s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 506s > (r = st_as_stars(t(volcano))) 506s stars object with 2 dimensions and 1 attribute 506s attribute(s): 506s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 506s A1 94 108 124 130.1879 150 195 732 506s dimension(s): 506s from to offset delta point x/y 506s X1 1 61 0 1 FALSE [x] 506s X2 1 99 0 1 FALSE [y] 506s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 506s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 506s > 506s > # Create points 506s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 506s > pnt = st_as_sf(pnt) 506s > 506s > # Extract - 'st_join' 506s > x = st_join(pnt, st_as_sf(r)) 507s > 507s > # Extract - 'st_extract' 507s > y = st_extract(r, pnt) 507s > 507s > # check there are NA's: 507s > any(is.na(x)) 507s [1] TRUE 507s > # Compare 507s > all.equal(x$A1, y[[1]]) 507s [1] TRUE 507s > 507s > ################################################ 507s > if (FALSE) { 507s + 507s + ## tic: segfaults 507s + # check equal results with stars_proxy: 507s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 507s + #all.equal(x$A1, y[[1]]) 507s + #all.equal(x, y) 507s + 507s + r = c(r, 2*r, 10*r) 507s + x = st_join(pnt, st_as_sf(r)) 507s + y = st_as_sf(st_extract(r, pnt)) 507s + all.equal(x, y) 507s + 507s + ## tic: segfaults 507s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 507s + #all.equal(st_as_sf(x), y) 507s + 507s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 507s + xp = read_stars(tif, proxy = TRUE) 507s + xm = read_stars(tif, proxy = FALSE) 507s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 507s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 507s + em = st_extract(xm, pts) 507s + if (utils::packageVersion("sf") >= "0.9-7") { 507s + ep = st_extract(xp, pts) 507s + print(all.equal(ep, em, check.attributes = TRUE)) 507s + } 507s + 507s + # two-attribute objects: 507s + library(stars) 507s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 507s + xp = read_stars(c(tif, tif), proxy = TRUE) 507s + xm = read_stars(c(tif, tif), proxy = FALSE) 507s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 507s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 507s + em = st_extract(xm, pts) 507s + if (utils::packageVersion("sf") >= "0.9-7") { 507s + ep = st_extract(xp, pts) 507s + print(all.equal(ep, em, check.attributes = TRUE)) 507s + } 507s + 507s + # single-attribute, single raster objects: 507s + tif1 = paste0(tempfile(), ".tif") 507s + write_stars(xm[1,,,1], "x.tif") 507s + xp = read_stars("x.tif", proxy = TRUE) 507s + xm = read_stars("x.tif", proxy = FALSE) 507s + em = st_extract(xm, pts) 507s + if (utils::packageVersion("sf") >= "0.9-7") { 507s + ep = st_extract(xp, pts) 507s + print(all.equal(ep, em, check.attributes = TRUE)) 507s + } 507s + 507s + # multiple-file attributes: 507s + x = c( 507s + "avhrr-only-v2.19810901.nc", 507s + "avhrr-only-v2.19810902.nc", 507s + "avhrr-only-v2.19810903.nc", 507s + "avhrr-only-v2.19810904.nc", 507s + "avhrr-only-v2.19810905.nc", 507s + "avhrr-only-v2.19810906.nc", 507s + "avhrr-only-v2.19810907.nc", 507s + "avhrr-only-v2.19810908.nc", 507s + "avhrr-only-v2.19810909.nc" 507s + ) 507s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 507s + if (!identical(file_list, "")) { 507s + y = read_stars(file_list, quiet = TRUE) 507s + print(y) 507s + st_crs(y) = "OGC:CRS84" 507s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 507s + em = st_extract(y, pts) 507s + 507s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 507s + print(y) 507s + st_crs(y) = "OGC:CRS84" 507s + if (utils::packageVersion("sf") >= "0.9-7") { 507s + ep = st_extract(y, pts) 507s + print(all.equal(em, ep)) 507s + } 507s + } 507s + 507s + # nearest & bilinear comparison: 507s + if (utils::packageVersion("sf") >= "0.9-7") { 507s + set.seed(12331) 507s + s = st_as_stars(matrix(rnorm(16), 4)) 507s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 507s + s1 = st_extract(s, pts, bilinear = FALSE) 507s + s2 = st_extract(s, pts, bilinear = TRUE) 507s + s1$s2 = s2[[1]] 507s + names(s1)[c(1,3)] = c("nearest", "bilinear") 507s + print(s1[sample(10000, 5),]) 507s + } 507s + } 507s > 507s BEGIN TEST gridtypes.R 507s 507s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 507s Copyright (C) 2024 The R Foundation for Statistical Computing 507s Platform: aarch64-unknown-linux-gnu 507s 507s R is free software and comes with ABSOLUTELY NO WARRANTY. 507s You are welcome to redistribute it under certain conditions. 507s Type 'license()' or 'licence()' for distribution details. 507s 507s R is a collaborative project with many contributors. 507s Type 'contributors()' for more information and 507s 'citation()' on how to cite R or R packages in publications. 507s 507s Type 'demo()' for some demos, 'help()' for on-line help, or 507s 'help.start()' for an HTML browser interface to help. 507s Type 'q()' to quit R. 507s 508s > suppressPackageStartupMessages(library(stars)) 510s > 510s > # regular, but not spatial: 510s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 510s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 510s stars object with 3 dimensions and 1 attribute 510s attribute(s): 510s Min. 1st Qu. Median Mean 3rd Qu. Max. 510s X 1 5.25 9.5 9.5 13.75 18 510s dimension(s): 510s from to offset delta point values 510s a 1 3 1 1 FALSE NULL 510s b 1 3 1 1 FALSE NULL 510s band 1 2 NA NA FALSE foo, bar 510s > as.data.frame(st, add_max=FALSE)[1:4,] 510s a b band X 510s 1 1 1 foo 1 510s 2 2 1 foo 2 510s 3 3 1 foo 3 510s 4 1 2 foo 4 510s > try(x <- st_bbox(st)) # error 510s > 510s > # regular, geotransform: 510s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 510s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 510s dimensions table does not have x & y, nor an sfc dimension 510s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 510s stars object with 3 dimensions and 1 attribute 510s attribute(s): 510s Min. 1st Qu. Median Mean 3rd Qu. Max. 510s X 1 5.25 9.5 9.5 13.75 18 510s dimension(s): 510s from to offset delta point values x/y 510s x 1 3 1 1 FALSE NULL [x] 510s y 1 3 1 1 FALSE NULL [y] 510s band 1 2 NA NA FALSE foo, bar 510s > as.data.frame(st, add_max=FALSE)[1:4,] 510s x y band X 510s 1 1.5 1.5 foo 1 510s 2 2.5 1.5 foo 2 510s 3 3.5 1.5 foo 3 510s 4 1.5 2.5 foo 4 510s > as.data.frame(st, add_max=TRUE)[1:4,] 510s x y band x_max y_max X 510s 1 1 1 foo 2 2 1 510s 2 2 1 foo 3 2 2 510s 3 3 1 foo 4 2 3 510s 4 1 2 foo 2 3 4 510s > st_bbox(st) 510s xmin ymin xmax ymax 510s 1 1 4 4 510s > 510s > # rectilinear with offset given: 510s > xd = c(1, 2, 4) 510s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 510s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 510s stars object with 3 dimensions and 1 attribute 510s attribute(s): 510s Min. 1st Qu. Median Mean 3rd Qu. Max. 510s X 1 5.25 9.5 9.5 13.75 18 510s dimension(s): 510s from to offset delta point values x/y 510s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 510s y 1 3 1 1 FALSE NULL [y] 510s band 1 2 NA NA FALSE foo, bar 510s > as.data.frame(st, add_max=FALSE)[1:4,] 510s x y band X 510s 1 1.5 1.5 foo 1 510s 2 3.0 1.5 foo 2 510s 3 5.0 1.5 foo 3 510s 4 1.5 2.5 foo 4 510s > as.data.frame(st, add_max=TRUE)[1:4,] 510s x y band x_max y_max X 510s 1 1 1 foo 2 2 1 510s 2 2 1 foo 4 2 2 510s 3 4 1 foo 6 2 3 510s 4 1 2 foo 2 3 4 510s > st_bbox(st) 510s xmin ymin xmax ymax 510s 1 1 6 4 510s > 510s > # rectilinear with midpoints given: 510s > xd = c(1, 2, 4) 510s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 510s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 510s stars object with 3 dimensions and 1 attribute 510s attribute(s): 510s Min. 1st Qu. Median Mean 3rd Qu. Max. 510s X 1 5.25 9.5 9.5 13.75 18 510s dimension(s): 510s from to offset delta point values x/y 510s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 510s y 1 3 0.5 1 FALSE NULL [y] 510s band 1 2 NA NA FALSE foo, bar 510s > as.data.frame(st, add_max=FALSE)[1:4,] 510s x y band X 510s 1 1.00 1 foo 1 510s 2 2.25 1 foo 2 510s 3 4.00 1 foo 3 510s 4 1.00 2 foo 4 510s > as.data.frame(st, add_max=TRUE)[1:4,] 510s x y band x_max y_max X 510s 1 0.5 0.5 foo 1.5 1.5 1 510s 2 1.5 0.5 foo 3.0 1.5 2 510s 3 3.0 0.5 foo 5.0 1.5 3 510s 4 0.5 1.5 foo 1.5 2.5 4 510s > st_bbox(st) 510s xmin ymin xmax ymax 510s 0.5 0.5 5.0 3.5 510s > 510s > # rectilinear with midpoints given, point support 510s > xd = c(1, 2, 4) 510s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 510s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 510s stars object with 3 dimensions and 1 attribute 510s attribute(s): 510s Min. 1st Qu. Median Mean 3rd Qu. Max. 510s X 1 5.25 9.5 9.5 13.75 18 510s dimension(s): 510s from to offset delta point values x/y 510s x 1 3 NA NA TRUE 1, 2, 4 [x] 510s y 1 3 0.5 1 TRUE NULL [y] 510s band 1 2 NA NA TRUE foo, bar 510s > as.data.frame(st, add_max=FALSE)[1:4,] 510s x y band X 510s 1 1 1 foo 1 510s 2 2 1 foo 2 510s 3 4 1 foo 3 510s 4 1 2 foo 4 510s > as.data.frame(st, add_max=TRUE)[1:4,] 510s x y band x_max y_max X 510s 1 1 0.5 foo 1 1.5 1 510s 2 2 0.5 foo 2 1.5 2 510s 3 4 0.5 foo 4 1.5 3 510s 4 1 1.5 foo 1 2.5 4 510s > st_bbox(st) 510s xmin ymin xmax ymax 510s 1.0 0.5 4.0 3.5 510s > 510s > # rectilinear with start/end given: 510s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 510s > xd = c(1, 2, 4, 8) # one more than dim of the data array 510s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 510s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 511s stars object with 3 dimensions and 1 attribute 511s attribute(s): 511s Min. 1st Qu. Median Mean 3rd Qu. Max. 511s X 1 5.25 9.5 9.5 13.75 18 511s dimension(s): 511s from to offset delta point values x/y 511s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 511s y 1 3 1 1 FALSE NULL [y] 511s band 1 2 NA NA FALSE foo, bar 511s > as.data.frame(st, add_max=FALSE)[1:4,] 511s x y band X 511s 1 1.5 1.5 foo 1 511s 2 3.0 1.5 foo 2 511s 3 6.0 1.5 foo 3 511s 4 1.5 2.5 foo 4 511s > as.data.frame(st, add_max=TRUE)[1:4,] 511s x y band x_max y_max X 511s 1 1 1 foo 2 2 1 511s 2 2 1 foo 4 2 2 511s 3 4 1 foo 8 2 3 511s 4 1 2 foo 2 3 4 511s > st_bbox(st) 511s xmin ymin xmax ymax 511s 1 1 8 4 511s > 511s > # with sfc: 511s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 511s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 511s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 511s stars object with 3 dimensions and 1 attribute 511s attribute(s): 511s Min. 1st Qu. Median Mean 3rd Qu. Max. 511s X 1 5.25 9.5 9.5 13.75 18 511s dimension(s): 511s from to offset delta point values 511s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 511s y 1 3 1 1 FALSE NULL 511s band 1 2 NA NA FALSE foo, bar 511s > as.data.frame(st, add_max=FALSE)[1:4,] 511s x y band X 511s 1 POINT (0 1) 1 foo 1 511s 2 POINT (2 1) 1 foo 2 511s 3 POINT (4 3) 1 foo 3 511s 4 POINT (0 1) 2 foo 4 511s > st_as_sf(st, long = TRUE)[1:4,] 511s Simple feature collection with 4 features and 3 fields 511s Geometry type: POINT 511s Dimension: XY 511s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 511s CRS: NA 511s y band X x 511s 1 1 foo 1 POINT (0 1) 511s 2 1 foo 2 POINT (2 1) 511s 3 1 foo 3 POINT (4 3) 511s 4 2 foo 4 POINT (0 1) 511s > st_bbox(st) 511s xmin ymin xmax ymax 511s 0 1 4 3 511s > 511s > # rotated/sheared: 511s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 511s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 511s stars object with 3 dimensions and 1 attribute 511s attribute(s): 511s Min. 1st Qu. Median Mean 3rd Qu. Max. 511s X 1 5.25 9.5 9.5 13.75 18 511s dimension(s): 511s from to offset delta point values x/y 511s x 1 3 1 1 FALSE NULL [x] 511s y 1 3 1 1 FALSE NULL [y] 511s band 1 2 NA NA FALSE foo, bar 511s sheared raster with parameters: 0.2 -0.2 511s > as.data.frame(st, add_max=FALSE)[1:4,] 511s x y X 511s 1 1.6 1.4 1 511s 2 2.6 1.2 2 511s 3 3.6 1.0 3 511s 4 1.8 2.4 4 511s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 511s Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 511s add_max will not work for rotated/shared rasters 511s > st_bbox(st) 511s xmin ymin xmax ymax 511s 1.0 0.4 4.6 4.0 511s > 511s > # curvilinear: 511s > set.seed(13531) 511s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 511s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 511s > ll = setNames(c(lon, lat), c("lon", "lat")) 511s > d = st_dimensions(lon = 1:3, lat = 1:3) 511s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 511s > (st = st_as_stars(a, curvilinear = ll)) 511s stars object with 2 dimensions and 1 attribute 511s attribute(s): 511s Min. 1st Qu. Median Mean 3rd Qu. Max. 511s X 1 3 5 5 7 9 511s dimension(s): 511s from to refsys point values x/y 511s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 511s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 511s curvilinear grid 511s > as.data.frame(st) 511s lon lat X 511s 1 0.89 0.250 1 511s 2 0.64 0.510 2 511s 3 0.30 0.670 3 511s 4 0.69 0.890 4 511s 5 0.47 0.890 5 511s 6 0.26 0.190 6 511s 7 0.57 0.021 7 511s 8 0.27 0.220 8 511s 9 0.03 0.340 9 511s > st_bbox(st) 511s xmin ymin xmax ymax 511s 0.030 0.021 0.890 0.890 511s > 511s > # time regular: 511s > t = as.Date("2019-01-20") + 0:3 511s > d = st_dimensions(t, sfc) 511s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 511s stars object with 2 dimensions and 1 attribute 511s attribute(s): 511s Min. 1st Qu. Median Mean 3rd Qu. Max. 511s a 1 3.75 6.5 6.5 9.25 12 511s dimension(s): 511s from to offset delta refsys point values 511s X1 1 4 2019-01-20 1 days Date FALSE NULL 511s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 511s > as.data.frame(st) 511s X1 X2 a 511s 1 2019-01-20 POINT (0 1) 1 511s 2 2019-01-21 POINT (0 1) 2 511s 3 2019-01-22 POINT (0 1) 3 511s 4 2019-01-23 POINT (0 1) 4 511s 5 2019-01-20 POINT (2 1) 5 511s 6 2019-01-21 POINT (2 1) 6 511s 7 2019-01-22 POINT (2 1) 7 511s 8 2019-01-23 POINT (2 1) 8 511s 9 2019-01-20 POINT (4 3) 9 511s 10 2019-01-21 POINT (4 3) 10 511s 11 2019-01-22 POINT (4 3) 11 511s 12 2019-01-23 POINT (4 3) 12 511s > 511s > # time, rectilinear 511s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 511s > d = st_dimensions(t, sfc) 511s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 511s stars object with 2 dimensions and 1 attribute 511s attribute(s): 511s Min. 1st Qu. Median Mean 3rd Qu. Max. 511s a 1 3.75 6.5 6.5 9.25 12 511s dimension(s): 511s from to refsys point values 511s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 511s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 511s > as.data.frame(st) 511s X1 X2 a 511s 1 2019-01-20 POINT (0 1) 1 511s 2 2019-01-22 POINT (0 1) 2 511s 3 2019-01-23 POINT (0 1) 3 511s 4 2019-01-30 POINT (0 1) 4 511s 5 2019-01-20 POINT (2 1) 5 511s 6 2019-01-22 POINT (2 1) 6 511s 7 2019-01-23 POINT (2 1) 7 511s 8 2019-01-30 POINT (2 1) 8 511s 9 2019-01-20 POINT (4 3) 9 511s 10 2019-01-22 POINT (4 3) 10 511s 11 2019-01-23 POINT (4 3) 11 511s 12 2019-01-30 POINT (4 3) 12 511s > 511s BEGIN TEST mdim.R 512s 512s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 512s Copyright (C) 2024 The R Foundation for Statistical Computing 512s Platform: aarch64-unknown-linux-gnu 512s 512s R is free software and comes with ABSOLUTELY NO WARRANTY. 512s You are welcome to redistribute it under certain conditions. 512s Type 'license()' or 'licence()' for distribution details. 512s 512s R is a collaborative project with many contributors. 512s Type 'contributors()' for more information and 512s 'citation()' on how to cite R or R packages in publications. 512s 512s Type 'demo()' for some demos, 'help()' for on-line help, or 512s 'help.start()' for an HTML browser interface to help. 512s Type 'q()' to quit R. 512s 512s > Sys.setenv(TZ="") 512s > suppressPackageStartupMessages(library(stars)) 515s > matrix(1:4,2) 515s [,1] [,2] 515s [1,] 1 3 515s [2,] 2 4 515s > m = matrix(1:4,2) 515s > s = st_as_stars(m) 515s > 515s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 515s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 515s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 515s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 515s > (s = st_set_dimensions(s, 2, tm)) 515s stars object with 2 dimensions and 1 attribute 515s attribute(s): 515s Min. 1st Qu. Median Mean 3rd Qu. Max. 515s A1 1 1.75 2.5 2.5 3.25 4 515s dimension(s): 515s from to offset delta refsys point 515s X1 1 2 NA NA WGS 84 TRUE 515s X2 1 2 2023-03-04 12:35:00 Universal 1 hours POSIXct FALSE 515s values 515s X1 POINT (0 1), POINT (3 2) 515s X2 NULL 515s > f = tempfile(fileext = ".nc") 515s > if (compareVersion(sf_extSoftVersion()["GDAL"], "3.4.0") > -1) { 515s + write_mdim(s, f, as_float = FALSE) 515s + s2 = read_mdim(f) 515s + print(s2) 515s + print(all.equal(s, s2, check.attributes = FALSE)) 515s + print(all.equal(s, s2)) 515s + 515s + st_crs(sfc) = st_crs(s2) 515s + st_crs(s) = st_crs(s2) 515s + tm = as.Date("2023-02-25") + 0:1 515s + sd = st_set_dimensions(s, 2, tm) 515s + print(sd) 515s + sd = st_set_dimensions(sd, 1, sfc) 515s + print(sd) 515s + f = tempfile(fileext = ".nc") 515s + write_mdim(sd, f) 515s + sd2 = read_mdim(f) 515s + print(sd2) 515s + print(all.equal(sd, sd2, check.attributes = FALSE)) 515s + print(all.equal(sd, sd2)) 515s + } 515s stars object with 2 dimensions and 1 attribute 515s attribute(s): 515s Min. 1st Qu. Median Mean 3rd Qu. Max. 515s A1 1 1.75 2.5 2.5 3.25 4 515s dimension(s): 515s from to offset delta refsys point 515s X1 1 2 NA NA WGS 84 TRUE 515s X2 1 2 2023-03-04 12:35:00 UTC 1 hours POSIXct NA 515s values 515s X1 POINT (0 1), POINT (3 2) 515s X2 NULL 515s [1] TRUE 515s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 515s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 515s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 515s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 515s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 515s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 515s stars object with 2 dimensions and 1 attribute 515s attribute(s): 515s Min. 1st Qu. Median Mean 3rd Qu. Max. 515s A1 1 1.75 2.5 2.5 3.25 4 515s dimension(s): 515s from to offset delta refsys point values 515s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 515s X2 1 2 2023-02-25 1 days Date FALSE NULL 515s stars object with 2 dimensions and 1 attribute 515s attribute(s): 515s Min. 1st Qu. Median Mean 3rd Qu. Max. 515s A1 1 1.75 2.5 2.5 3.25 4 515s dimension(s): 515s from to offset delta refsys point values 515s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 515s X2 1 2 2023-02-25 1 days Date FALSE NULL 515s stars object with 2 dimensions and 1 attribute 515s attribute(s): 516s Min. 1st Qu. Median Mean 3rd Qu. Max. 516s A1 1 1.75 2.5 2.5 3.25 4 516s dimension(s): 516s from to offset delta refsys point values 516s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 516s X2 1 2 2023-02-25 1 days Date NA NULL 516s [1] TRUE 516s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 516s > 516s Warning messages: 516s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 516s GDAL Error 6: SetIndexingVariable() not implemented 516s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 516s GDAL Error 6: SetIndexingVariable() not implemented 516s 3: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 516s GDAL Error 6: SetIndexingVariable() not implemented 516s 4: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 516s GDAL Error 6: SetIndexingVariable() not implemented 516s BEGIN TEST nc.R 516s 516s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 516s Copyright (C) 2024 The R Foundation for Statistical Computing 516s Platform: aarch64-unknown-linux-gnu 516s 516s R is free software and comes with ABSOLUTELY NO WARRANTY. 516s You are welcome to redistribute it under certain conditions. 516s Type 'license()' or 'licence()' for distribution details. 516s 516s R is a collaborative project with many contributors. 516s Type 'contributors()' for more information and 516s 'citation()' on how to cite R or R packages in publications. 516s 516s Type 'demo()' for some demos, 'help()' for on-line help, or 516s 'help.start()' for an HTML browser interface to help. 516s Type 'q()' to quit R. 516s 516s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 516s > suppressPackageStartupMessages(library(sf)) 518s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 520s > m = st_set_geometry(nc, NULL) 520s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 520s > dim(n) = c(county = 100, var = 3, year = 2) 520s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 520s > suppressPackageStartupMessages(library(stars)) 520s > (st = st_as_stars(pop = n)) 520s stars object with 3 dimensions and 1 attribute 520s attribute(s): 520s Min. 1st Qu. Median Mean 3rd Qu. Max. 520s pop 0 8 538 1657.032 1784 30757 520s dimension(s): 520s from to values 520s county 1 100 Ashe,...,Brunswick 520s var 1 3 BIR , SID , NWBIR 520s year 1 2 1974, 1979 520s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 520s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 520s stars object with 3 dimensions and 1 attribute 520s attribute(s): 520s Min. 1st Qu. Median Mean 3rd Qu. Max. 520s pop 0 8 538 1657.032 1784 30757 520s dimension(s): 520s from to refsys point 520s geometries 1 100 NAD27 FALSE 520s var 1 3 NA NA 520s year 1 2 NA NA 520s values 520s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 520s var BIR , SID , NWBIR 520s year 1974, 1979 520s > foo 520s stars object with 3 dimensions and 1 attribute 520s attribute(s): 520s Min. 1st Qu. Median Mean 3rd Qu. Max. 520s pop 0 8 538 1657.032 1784 30757 520s dimension(s): 520s from to refsys point 520s county 1 100 NAD27 FALSE 520s var 1 3 NA NA 520s year 1 2 NA NA 520s values 520s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 520s var BIR , SID , NWBIR 520s year 1974, 1979 520s > st_bbox(foo) 520s xmin ymin xmax ymax 520s -84.32385 33.88199 -75.45698 36.58965 520s > (x = st_as_sf(foo)) 520s Simple feature collection with 100 features and 6 fields 520s Geometry type: MULTIPOLYGON 520s Dimension: XY 520s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 520s Geodetic CRS: NAD27 520s First 10 features: 521s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 521s 1 1091 1 10 1364 0 19 521s 2 487 0 10 542 3 12 521s 3 3188 5 208 3616 6 260 521s 4 508 1 123 830 2 145 521s 5 1421 9 1066 1606 3 1197 521s 6 1452 7 954 1838 5 1237 521s 7 286 0 115 350 2 139 521s 8 420 0 254 594 2 371 521s 9 968 4 748 1190 2 844 521s 10 1612 1 160 2038 5 176 521s county 521s 1 MULTIPOLYGON (((-81.47276 3... 521s 2 MULTIPOLYGON (((-81.23989 3... 521s 3 MULTIPOLYGON (((-80.45634 3... 521s 4 MULTIPOLYGON (((-76.00897 3... 521s 5 MULTIPOLYGON (((-77.21767 3... 521s 6 MULTIPOLYGON (((-76.74506 3... 521s 7 MULTIPOLYGON (((-76.00897 3... 521s 8 MULTIPOLYGON (((-76.56251 3... 521s 9 MULTIPOLYGON (((-78.30876 3... 521s 10 MULTIPOLYGON (((-80.02567 3... 521s > frac = function(x) x[2] / x[1] 521s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 521s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 521s > st_apply(foo, c(1,3), frac) 521s stars object with 2 dimensions and 1 attribute 521s attribute(s): 521s Min. 1st Qu. Median Mean 3rd Qu. Max. 521s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 521s dimension(s): 521s from to refsys point 521s county 1 100 NAD27 FALSE 521s year 1 2 NA NA 521s values 521s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 521s year 1974, 1979 521s > st_apply(foo, c(1,3), frac2) 521s stars object with 3 dimensions and 1 attribute 521s attribute(s): 521s Min. 1st Qu. Median Mean 3rd Qu. Max. 521s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 521s dimension(s): 521s from to refsys point 521s frac2 1 2 NA NA 521s county 1 100 NAD27 FALSE 521s year 1 2 NA NA 521s values 521s frac2 sidsr, nwbr 521s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 521s year 1974, 1979 521s > st_apply(foo, c(1,3), frac2an) 521s stars object with 3 dimensions and 1 attribute 521s attribute(s): 521s Min. 1st Qu. Median Mean 3rd Qu. Max. 521s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 521s dimension(s): 521s from to refsys point 521s frac2an 1 2 NA NA 521s county 1 100 NAD27 FALSE 521s year 1 2 NA NA 521s values 521s frac2an NULL 521s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 521s year 1974, 1979 521s > library(abind) 521s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 521s stars object with 3 dimensions and 1 attribute 521s attribute(s): 521s Min. 1st Qu. Median Mean 3rd Qu. Max. 521s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 521s dimension(s): 521s from to refsys point 521s county 1 100 NAD27 FALSE 521s year 1 2 NA NA 521s frac2 1 2 NA NA 521s values 521s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 521s year 1974, 1979 521s frac2 sidsr, nwbr 521s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 521s > all.equal(st_dimensions(x), st_dimensions(y)) 521s [1] TRUE 521s > 521s > split(foo, 2) 521s stars object with 2 dimensions and 3 attributes 521s attribute(s): 521s Min. 1st Qu. Median Mean 3rd Qu. Max. 521s BIR 248 1176.75 2265 3761.770 4450.75 30757 521s SID 0 2.00 5 7.515 9.00 57 521s NWBIR 1 206.00 742 1201.810 1315.75 11631 521s dimension(s): 521s from to refsys point 521s county 1 100 NAD27 FALSE 521s year 1 2 NA NA 521s values 521s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 521s year 1974, 1979 521s > split(foo, 3) 521s stars object with 2 dimensions and 2 attributes 521s attribute(s): 521s Min. 1st Qu. Median Mean 3rd Qu. Max. 521s 1974 0 8 501.5 1452.367 1580.50 21588 521s 1979 0 9 614.0 1861.697 2040.25 30757 521s dimension(s): 521s from to refsys point 521s county 1 100 NAD27 FALSE 521s var 1 3 NA NA 521s values 521s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 521s var BIR , SID , NWBIR 521s > 521s > st_crs(foo) 521s Coordinate Reference System: 521s User input: NAD27 521s wkt: 521s GEOGCRS["NAD27", 521s DATUM["North American Datum 1927", 521s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 521s LENGTHUNIT["metre",1]]], 521s PRIMEM["Greenwich",0, 521s ANGLEUNIT["degree",0.0174532925199433]], 521s CS[ellipsoidal,2], 521s AXIS["geodetic latitude (Lat)",north, 521s ORDER[1], 521s ANGLEUNIT["degree",0.0174532925199433]], 521s AXIS["geodetic longitude (Lon)",east, 521s ORDER[2], 521s ANGLEUNIT["degree",0.0174532925199433]], 521s USAGE[ 521s SCOPE["Geodesy."], 521s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 521s BBOX[7.15,167.65,83.17,-47.74]], 521s ID["EPSG",4267]] 521s > plot(foo) 522s > 522s > # subset vector cube: 522s > foo[nc[1]] 523s stars object with 3 dimensions and 1 attribute 523s attribute(s): 523s Min. 1st Qu. Median Mean 3rd Qu. Max. 523s pop 0 8 538 1657.032 1784 30757 523s dimension(s): 523s from to refsys point 523s county 1 100 NAD27 FALSE 523s var 1 3 NA NA 523s year 1 2 NA NA 523s values 523s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 523s var BIR , SID , NWBIR 523s year 1974, 1979 523s > 523s BEGIN TEST plot.R 523s 523s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 523s Copyright (C) 2024 The R Foundation for Statistical Computing 523s Platform: aarch64-unknown-linux-gnu 523s 523s R is free software and comes with ABSOLUTELY NO WARRANTY. 523s You are welcome to redistribute it under certain conditions. 523s Type 'license()' or 'licence()' for distribution details. 523s 523s R is a collaborative project with many contributors. 523s Type 'contributors()' for more information and 523s 'citation()' on how to cite R or R packages in publications. 523s 523s Type 'demo()' for some demos, 'help()' for on-line help, or 523s 'help.start()' for an HTML browser interface to help. 523s Type 'q()' to quit R. 523s 523s > suppressPackageStartupMessages(library(stars)) 526s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 526s + data(air) # this loads several datasets in .GlobalEnv 526s + dim(air) 526s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 526s + aq = st_as_stars(list(PM10 = air), dimensions = d) 526s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 526s + st_geometry(aq) 526s + } 530s Geometry set for 70 features 530s Geometry type: POINT 530s Dimension: XY 530s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 530s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 530s First 5 geometries: 530s POINT (9.585911 53.67057) 530s POINT (9.68503 53.52418) 530s > 530s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 530s > if (csv != "") { 530s + rgb = read.csv(csv, header = TRUE, sep = ";") 530s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 530s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 530s + } 530s > 530s > # https://github.com/r-spatial/stars/issues/233 : 530s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 530s POINT (9.791584 54.07312) 530s POINT (13.64701 52.44775) 530s POINT (13.29635 52.65315) 531s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 531s > plot(output) 532s > 532s Warning message: 532s In plot.stars(output) : 532s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 532s BEGIN TEST predict.R 532s 532s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 532s Copyright (C) 2024 The R Foundation for Statistical Computing 532s Platform: aarch64-unknown-linux-gnu 532s 532s R is free software and comes with ABSOLUTELY NO WARRANTY. 532s You are welcome to redistribute it under certain conditions. 532s Type 'license()' or 'licence()' for distribution details. 532s 532s R is a collaborative project with many contributors. 532s Type 'contributors()' for more information and 532s 'citation()' on how to cite R or R packages in publications. 532s 532s Type 'demo()' for some demos, 'help()' for on-line help, or 532s 'help.start()' for an HTML browser interface to help. 532s Type 'q()' to quit R. 532s 533s > suppressPackageStartupMessages(library(stars)) 535s > # predict: 535s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 535s > (x = read_stars(tif)) 536s stars object with 3 dimensions and 1 attribute 536s attribute(s): 536s Min. 1st Qu. Median Mean 3rd Qu. Max. 536s L7_ETMs.tif 1 54 69 68.91242 86 255 536s dimension(s): 536s from to offset delta refsys point x/y 536s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 536s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 536s band 1 6 NA NA NA NA 536s > st_crs(x) = st_crs(x) # cleans trailing space 536s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 536s > x = predict(x, model) 541s > 541s > (y = read_stars(tif, proxy = TRUE)) 541s stars_proxy object with 1 attribute in 1 file(s): 541s $L7_ETMs.tif 541s [1] "[...]/L7_ETMs.tif" 541s 541s dimension(s): 541s from to offset delta refsys point x/y 541s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 541s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 541s band 1 6 NA NA NA NA 541s > (yp = predict(y, model)) 541s stars_proxy object with 1 attribute in 1 file(s): 541s $L7_ETMs.tif 541s [1] "[...]/L7_ETMs.tif" 541s 541s dimension(s): 541s from to offset delta refsys point x/y 541s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 541s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 541s band 1 6 NA NA NA NA 541s call_list: 541s [[1]] 541s predict(object = object, model = model) 541s attr(,".Environment") 541s 541s 541s This object has pending lazy operations: dimensions as printed may not reflect this. 541s > all.equal(x, st_as_stars(yp)) 545s [1] TRUE 545s > 545s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 545s > (y_spl = split(yy, 3)) 545s stars_proxy object with 1 attribute in 1 file(s): 545s $L7_ETMs.tif 545s [1] "[...]/L7_ETMs.tif" 545s 545s dimension(s): 545s from to offset delta refsys point values 545s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 545s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 545s band 1 6 NA NA NA NA band1,...,band6 545s x/y 545s x [x] 545s y [y] 545s band 545s call_list: 545s [[1]] 545s split(x = x, 3) 545s attr(,".Environment") 545s 545s 545s This object has pending lazy operations: dimensions as printed may not reflect this. 545s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 545s x y band1 band2 band3 band4 band5 band6 545s 1 288790.5 9120747 69 56 46 79 86 46 545s 2 288819.0 9120747 69 57 49 75 88 49 545s 3 288847.5 9120747 63 52 45 66 75 41 545s > 545s BEGIN TEST proxy.R 545s 545s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 545s Copyright (C) 2024 The R Foundation for Statistical Computing 545s Platform: aarch64-unknown-linux-gnu 545s 545s R is free software and comes with ABSOLUTELY NO WARRANTY. 545s You are welcome to redistribute it under certain conditions. 545s Type 'license()' or 'licence()' for distribution details. 545s 545s R is a collaborative project with many contributors. 545s Type 'contributors()' for more information and 545s 'citation()' on how to cite R or R packages in publications. 545s 545s Type 'demo()' for some demos, 'help()' for on-line help, or 545s 'help.start()' for an HTML browser interface to help. 545s Type 'q()' to quit R. 545s 546s > Sys.setenv(TZ="UTC") 546s > suppressPackageStartupMessages(library(sf)) 548s > suppressPackageStartupMessages(library(stars)) 549s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 549s > (r = read_stars(tif, proxy = TRUE)) 549s stars_proxy object with 1 attribute in 1 file(s): 549s $L7_ETMs.tif 549s [1] "[...]/L7_ETMs.tif" 549s 549s dimension(s): 549s from to offset delta refsys point x/y 549s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 549s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 549s band 1 6 NA NA NA NA 549s > if (interactive()) { 549s + plot(r) 549s + } 549s > dim(r) 549s x y band 549s 349 352 6 549s > r[,,,2:3] 549s stars_proxy object with 1 attribute in 1 file(s): 549s $L7_ETMs.tif 549s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 2 3 NA NA NA NA 555s > r+r 555s stars_proxy object with 1 attribute in 1 file(s): 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s call_list: 555s [[1]] 555s e1 + e2 555s attr(,".Environment") 555s 555s 555s This object has pending lazy operations: dimensions as printed may not reflect this. 555s > st_as_stars(sin(r), downsample = 2) 555s stars object with 3 dimensions and 1 attribute 555s attribute(s): 555s Min. 1st Qu. Median Mean 3rd Qu. Max. 555s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s > aperm(r, c(3,2,1)) 555s stars_proxy object with 1 attribute in 1 file(s): 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s call_list: 555s [[1]] 555s aperm(a = a, perm = perm) 555s attr(,".Environment") 555s 555s 555s This object has pending lazy operations: dimensions as printed may not reflect this. 555s > if (interactive()) { 555s + plot(r) 555s + } 555s > (xx = c(r,r)) 555s stars_proxy object with 2 attributes in 2 file(s): 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s > st_redimension(xx) 555s stars_proxy object with 1 attribute in 2 file(s): 555s $L7_ETMs.tif.L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 555s band 1 6 NA NA NA NA 555s new_dim 1 2 NA NA NA NA 555s values x/y 555s x NULL [x] 555s y NULL [y] 555s band NULL 555s new_dim L7_ETMs.tif, L7_ETMs.tif 555s > st_as_stars(r) 555s stars object with 3 dimensions and 1 attribute 555s attribute(s): 555s Min. 1st Qu. Median Mean 3rd Qu. Max. 555s L7_ETMs.tif 1 54 69 68.91242 86 255 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s > (y = st_apply(r, 1:2, max)) 555s stars_proxy object with 1 attribute in 1 file(s): 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s call_list: 555s [[1]] 555s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 555s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 555s attr(,".Environment") 555s 555s 555s This object has pending lazy operations: dimensions as printed may not reflect this. 555s > (yy = st_as_stars(y, downsample = 1)) 555s stars object with 2 dimensions and 1 attribute 555s attribute(s): 555s Min. 1st Qu. Median Mean 3rd Qu. Max. 555s max 55 85 96 99.38568 113 255 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s > (y = adrop(st_apply(r, c("x", "y"), max))) 555s stars_proxy object with 1 attribute in 1 file(s): 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s call_list: 555s [[1]] 555s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 555s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 555s attr(,".Environment") 555s 555s 555s [[2]] 555s adrop(x = x, drop = drop) 555s attr(,".Environment") 555s 555s 555s This object has pending lazy operations: dimensions as printed may not reflect this. 555s > (yy = st_as_stars(y, downsample = 1)) 555s stars object with 2 dimensions and 1 attribute 555s attribute(s): 555s Min. 1st Qu. Median Mean 3rd Qu. Max. 555s max 55 85 96 99.38568 113 255 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s > plot(yy) 555s > (y = adrop(st_apply(r, c("x", "band"), max))) 555s stars_proxy object with 1 attribute in 1 file(s): 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s call_list: 555s [[1]] 555s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 555s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 555s attr(,".Environment") 555s 555s 555s [[2]] 555s adrop(x = x, drop = drop) 555s attr(,".Environment") 555s 555s 555s This object has pending lazy operations: dimensions as printed may not reflect this. 555s > (yy = st_as_stars(y, downsample = 1)) 555s stars object with 2 dimensions and 1 attribute 555s attribute(s): 555s Min. 1st Qu. Median Mean 3rd Qu. Max. 555s max 77 111 133 137.8505 157 255 555s dimension(s): 555s from to offset delta refsys point 555s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 555s band 1 6 NA NA NA NA 555s > rm(yy) 555s > 555s > (xx = c(r,r)) 555s Warning message: 555s In FUN(X[[i]], ...) : 555s st_apply on x/y dimensions applied to downsampled image(s) 555s stars_proxy object with 2 attributes in 2 file(s): 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s > names(xx) = c("a", "b") 555s > xx["a"] 555s stars_proxy object with 1 attribute in 1 file(s): 555s $a 555s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 555s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 555s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 555s + crs = st_crs(r)) 555s > r = r[buf] # crops 555s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 555s > 555s > # c: 555s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 555s > if (FALSE && f != "") { 555s + files = c("avhrr-only-v2.19810901.nc", 555s + "avhrr-only-v2.19810902.nc", 555s + "avhrr-only-v2.19810903.nc", 555s + "avhrr-only-v2.19810904.nc", 555s + "avhrr-only-v2.19810905.nc", 555s + "avhrr-only-v2.19810906.nc", 555s + "avhrr-only-v2.19810907.nc", 555s + "avhrr-only-v2.19810908.nc", 555s + "avhrr-only-v2.19810909.nc") 555s + l = list() 555s + for (f in files) { 555s + from = system.file(paste0("netcdf/", f), package = "starsdata") 555s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 555s + } 555s + ret = do.call(c, l) 555s + print(ret) 555s + all = system.file(paste0("netcdf/", files), package = "starsdata") 555s + ret = read_stars(all, sub = c("sst", "anom")) 555s + print(ret) 555s + print(st_redimension(ret)) # collapse the two attributes into new dimension 555s + 555s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 555s + #print(ret) 555s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 555s + #print(ret) 555s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 555s + print(ret) 555s + } 555s > 555s > # demonstrate that environments work: 555s > x = read_stars(tif, proxy = TRUE) 555s > f = function(x) { 555s + g = function(xx) { 555s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 555s + st_apply(xx, 1:2, ndvi) 555s + } 555s + g(x) 555s + } 555s > (x = f(x)) 555s stars_proxy object with 1 attribute in 1 file(s): 555s $L7_ETMs.tif 555s [1] "[...]/L7_ETMs.tif" 555s 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s band 1 6 NA NA NA NA 555s call_list: 555s [[1]] 555s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 555s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 555s attr(,".Environment") 555s 555s 555s This object has pending lazy operations: dimensions as printed may not reflect this. 555s > st_as_stars(x) 555s stars object with 2 dimensions and 1 attribute 555s attribute(s): 555s Min. 1st Qu. Median Mean 3rd Qu. Max. 555s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 555s dimension(s): 555s from to offset delta refsys point x/y 555s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 555s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 555s > 555s BEGIN TEST raster.R 555s 555s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 555s Copyright (C) 2024 The R Foundation for Statistical Computing 555s Platform: aarch64-unknown-linux-gnu 555s 555s R is free software and comes with ABSOLUTELY NO WARRANTY. 555s You are welcome to redistribute it under certain conditions. 555s Type 'license()' or 'licence()' for distribution details. 555s 555s R is a collaborative project with many contributors. 555s Type 'contributors()' for more information and 555s 'citation()' on how to cite R or R packages in publications. 555s 555s Type 'demo()' for some demos, 'help()' for on-line help, or 555s 'help.start()' for an HTML browser interface to help. 555s Type 'q()' to quit R. 555s 555s > options(rgdal_show_exportToProj4_warnings = "none") 555s > suppressPackageStartupMessages(library(stars)) 558s > 558s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 558s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 558s + 558s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 558s + (x = read_stars(tif)) 558s + (r = as(x, "Raster")) 558s + (y = st_as_stars(r)) 558s + 558s + # single band: 558s + x = adrop(x[,,,1]) 558s + r = as(x, "Raster") 558s + (y = st_as_stars(r)) 558s + 558s + # proxy: 558s + (x = read_stars(tif, proxy = TRUE)) 558s + (r = as(x, "Raster")) 558s + (y = st_as_stars(r)) 558s + (y2 = st_as_stars(r, proxy = TRUE)) 558s + } 587s stars_proxy object with 1 attribute in 1 file(s): 587s $L7_ETMs.tif 587s [1] "[...]/L7_ETMs.tif" 587s 587s dimension(s): 587s from to offset delta refsys point x/y 587s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 587s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 587s band 1 6 NA NA NA NA 587s > 587s > if (require(terra, quietly = TRUE)) { 587s + ## terra ------------- 587s + stopifnot(require(terra)) 587s + (x = read_stars(tif)) 587s + (r = as(x, "SpatRaster")) 587s + (y = st_as_stars(r)) 587s + 587s + # single band: 587s + x = adrop(x[,,,1]) 587s + r = as(x, "SpatRaster") 587s + (y = st_as_stars(r)) 587s + 587s + # proxy: 587s + (x = read_stars(tif, proxy = TRUE)) 587s + (r = as(x, "SpatRaster")) 587s + (y = st_as_stars(r)) 587s + (y2 = st_as_stars(r, proxy = TRUE)) 587s + 587s + f = system.file("tif/lc.tif", package = "stars") 587s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 587s + levels(lc[[1]]) 587s + r = rast(lc) 587s + e = attr(lc[[1]], "exclude") 587s + 587s + if (packageVersion("terra") >= "1.5.48") { 587s + 587s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 587s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 587s + 587s + r<- rast(nrow=10, ncol=10) 587s + set.seed(5) 587s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 587s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 587s + 587s + r2<- rast(nrow=10, ncol=10) 587s + set.seed(6) 587s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 587s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 587s + 587s + r3<- c(r,r2) 587s + names(r3)<- c("lyr.1", "lyr.2") 587s + 587s + r3_stars<- st_as_stars(r3) 587s + 587s + st_redimension(r3_stars) |> print() 587s + rast(r3_stars) |> levels() |> print() 587s + 587s + m = matrix(1:121, 11, 11) 587s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 587s + s = st_as_stars(bb, values = m) 587s + r = rast(s) 587s + aggregate(r, 2) |> st_as_stars() -> r.s 587s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 587s + } 587s + } 589s [1] TRUE 589s [1] TRUE 590s stars object with 3 dimensions and 1 attribute 590s attribute(s): 590s lyr.1.lyr.2 590s c1:34 590s c2:32 590s c3:34 590s x1:28 590s x2:37 590s x3:35 590s dimension(s): 590s from to offset delta refsys values x/y 590s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 590s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 590s new_dim 1 2 NA NA NA lyr.1, lyr.2 591s [[1]] 591s IDs categories 591s 1 1 c1 591s 2 2 c2 591s 3 3 c3 591s 591s [[2]] 591s IDs categories 591s 1 0 x1 591s 2 2 x2 591s 3 3 x3 591s 591s > 591s > 591s BEGIN TEST rasterize.R 591s 591s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 591s Copyright (C) 2024 The R Foundation for Statistical Computing 591s Platform: aarch64-unknown-linux-gnu 591s 591s R is free software and comes with ABSOLUTELY NO WARRANTY. 591s You are welcome to redistribute it under certain conditions. 591s Type 'license()' or 'licence()' for distribution details. 591s 591s R is a collaborative project with many contributors. 591s Type 'contributors()' for more information and 591s 'citation()' on how to cite R or R packages in publications. 591s 591s Type 'demo()' for some demos, 'help()' for on-line help, or 591s 'help.start()' for an HTML browser interface to help. 591s Type 'q()' to quit R. 591s 592s > suppressPackageStartupMessages(library(stars)) 595s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 596s > (x = st_rasterize(nc)) # default grid: 598s stars object with 2 dimensions and 12 attributes 598s attribute(s): 598s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 598s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 598s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 598s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 598s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 598s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 598s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 598s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 598s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 598s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 598s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 598s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 598s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 598s dimension(s): 599s from to offset delta refsys point x/y 599s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 599s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 599s > plot(x, axes = TRUE) 599s > # a bit more customized grid: 599s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 599s stars object with 2 dimensions and 12 attributes 599s attribute(s): 599s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 599s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 599s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 599s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 599s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 599s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 599s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 599s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 599s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 599s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 599s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 599s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 599s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 599s dimension(s): 599s from to offset delta refsys point x/y 599s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 599s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 599s > plot(x, axes = TRUE) 599s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 599s Simple feature collection with 2 features and 1 field 599s Geometry type: LINESTRING 599s Dimension: XY 599s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 599s CRS: NA 599s a 599s 1 1 599s 2 2 599s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 599s 1 LINESTRING (0.1 0, 1.1 1) 599s 2 LINESTRING (0 0.05, 1 0.05) 599s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 599s stars object with 2 dimensions and 1 attribute 599s attribute(s): 599s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 599s values NA NA NA NaN NA NA 100 599s dimension(s): 599s from to offset delta x/y 599s x 1 10 0 0.1 [x] 599s y 1 10 1 -0.1 [y] 599s > # the following two plots confirm that (only) the 599s > # upper-left corner is part of the grid cell (when dy is negative), leading 599s > # to a seemingly half-gridcell-shift problem: 599s > ## sf_extSoftVersion()["GDAL"] 599s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 599s > plot(ls, add = TRUE, col = "red") 599s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 600s > plot(ls, add = TRUE, col = "red") 600s > # add lines to existing 0 values, summing values in case of multiple lines: 600s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 600s stars object with 2 dimensions and 1 attribute 600s attribute(s): 600s Min. 1st Qu. Median Mean 3rd Qu. Max. 600s values 0 0 0 0 0 0 600s dimension(s): 600s from to offset delta x/y 600s x 1 10 0 0.1 [x] 600s y 1 10 1 -0.1 [y] 600s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 600s > plot(r, axes = TRUE, reset = FALSE) 600s > plot(ls, add = TRUE, col = "red") 600s > 600s BEGIN TEST rectilinear.R 600s 600s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 600s Copyright (C) 2024 The R Foundation for Statistical Computing 600s Platform: aarch64-unknown-linux-gnu 600s 600s R is free software and comes with ABSOLUTELY NO WARRANTY. 600s You are welcome to redistribute it under certain conditions. 600s Type 'license()' or 'licence()' for distribution details. 600s 600s R is a collaborative project with many contributors. 600s Type 'contributors()' for more information and 600s 'citation()' on how to cite R or R packages in publications. 600s 600s Type 'demo()' for some demos, 'help()' for on-line help, or 600s 'help.start()' for an HTML browser interface to help. 600s Type 'q()' to quit R. 600s 600s > suppressPackageStartupMessages(library(stars)) 603s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 603s > x = read_stars(tif) 603s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 603s stars object with 3 dimensions and 1 attribute 603s attribute(s): 603s Min. 1st Qu. Median Mean 3rd Qu. Max. 603s L7_ETMs.tif 1 54 69 68.9915 86 255 603s dimension(s): 604s from to refsys point 604s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 604s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 604s band 1 6 NA NA 604s values x/y 604s x [288790.5,288819),...,[298708.5,298737) [x] 604s y [9120747,9120718),...,[9110743,9110715) [y] 604s band NULL 604s > image(xx) # chooses useRaster itself 604s > # see also tidy.R for a ggplot example, leaving out the row. 604s > 604s > m = matrix(1:16, 4, 4) 604s > x = 1:4 604s > y = 2:5 604s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 604s stars object with 2 dimensions and 1 attribute 604s attribute(s): 604s Min. 1st Qu. Median Mean 3rd Qu. Max. 604s m 1 4.75 8.5 8.5 12.25 16 604s dimension(s): 605s from to offset delta point x/y 605s x 1 4 1 1 FALSE [x] 605s y 1 4 2 1 FALSE [y] 605s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 605s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 605s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 605s > 605s > # $<-.stars: 605s > st$foo = st$m * 2 605s > st 605s stars object with 2 dimensions and 2 attributes 605s attribute(s): 605s Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 605s length of values ( 6 ) does not match length of dimension 2 ( 4 ) 605s Min. 1st Qu. Median Mean 3rd Qu. Max. 605s m 1 4.75 8.5 8.5 12.25 16 605s foo 2 9.50 17.0 17.0 24.50 32 605s dimension(s): 605s from to point values x/y 605s x 1 4 FALSE [1,2),...,[4,6) [x] 605s y 1 4 FALSE [2,3),...,[5,8) [y] 605s > 605s > # st_as_sf: 605s > 605s > if (utils::packageVersion("sf") > "0.7.2") { 605s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 605s + } 605s > 605s > image(st, text_values = TRUE, axes = TRUE) 605s > 605s BEGIN TEST redimension.R 605s 605s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 605s Copyright (C) 2024 The R Foundation for Statistical Computing 605s Platform: aarch64-unknown-linux-gnu 605s 605s R is free software and comes with ABSOLUTELY NO WARRANTY. 605s You are welcome to redistribute it under certain conditions. 605s Type 'license()' or 'licence()' for distribution details. 605s 605s R is a collaborative project with many contributors. 605s Type 'contributors()' for more information and 605s 'citation()' on how to cite R or R packages in publications. 605s 605s Type 'demo()' for some demos, 'help()' for on-line help, or 605s 'help.start()' for an HTML browser interface to help. 605s Type 'q()' to quit R. 605s 606s > suppressPackageStartupMessages(library(stars)) 608s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 608s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 609s > (xx = st_redimension(r, along = list(foo = 1:4))) 609s stars_proxy object with 1 attribute in 4 file(s): 609s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 609s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s [4] "[...]/L7_ETMs.tif" 609s 609s dimension(s): 609s from to offset delta refsys point x/y 609s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 609s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 609s band 1 6 NA NA NA NA 609s foo 1 4 1 1 NA NA 609s > (rr = c(xx, xx)) 609s stars_proxy object with 2 attributes in 8 file(s): 609s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 609s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s [4] "[...]/L7_ETMs.tif" 609s 609s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 609s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s [4] "[...]/L7_ETMs.tif" 609s 609s dimension(s): 609s from to offset delta refsys point x/y 609s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 609s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 609s band 1 6 NA NA NA NA 609s foo 1 4 1 1 NA NA 609s > # st_as_stars(rr) 609s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 609s stars_proxy object with 1 attribute in 8 file(s): 609s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 609s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s 609s dimension(s): 609s from to offset delta refsys point x/y 609s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 609s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 609s band 1 6 NA NA NA NA 609s foo 1 4 1 1 NA NA 609s bar 1 2 2001-01-01 365 days Date NA 609s > (rr = c(a = xx, b = xx)) 609s stars_proxy object with 2 attributes in 8 file(s): 609s $a 609s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s [4] "[...]/L7_ETMs.tif" 609s 609s $b 609s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s [4] "[...]/L7_ETMs.tif" 609s 609s dimension(s): 609s from to offset delta refsys point x/y 609s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 609s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 609s band 1 6 NA NA NA NA 609s foo 1 4 1 1 NA NA 609s > # st_as_stars(rr) 609s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 609s stars_proxy object with 1 attribute in 8 file(s): 609s $a.b 609s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 609s 609s dimension(s): 610s from to offset delta refsys point x/y 610s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 610s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 610s band 1 6 NA NA NA NA 610s foo 1 4 1 1 NA NA 610s bar 1 2 2001-01-01 365 days Date NA 610s > 610s BEGIN TEST sf.R 610s 610s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 610s Copyright (C) 2024 The R Foundation for Statistical Computing 610s Platform: aarch64-unknown-linux-gnu 610s 610s R is free software and comes with ABSOLUTELY NO WARRANTY. 610s You are welcome to redistribute it under certain conditions. 610s Type 'license()' or 'licence()' for distribution details. 610s 610s R is a collaborative project with many contributors. 610s Type 'contributors()' for more information and 610s 'citation()' on how to cite R or R packages in publications. 610s 610s Type 'demo()' for some demos, 'help()' for on-line help, or 610s 'help.start()' for an HTML browser interface to help. 610s Type 'q()' to quit R. 610s 610s > suppressPackageStartupMessages(library(stars)) 613s > library(sf) 613s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 613s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 613s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 613s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 613s > (x = read_stars(tif)[,1:20,1:20]) 613s stars object with 3 dimensions and 1 attribute 613s attribute(s): 613s Min. 1st Qu. Median Mean 3rd Qu. Max. 613s L7_ETMs.tif 17 44 58 58.19667 70 130 613s dimension(s): 613s from to offset delta refsys point x/y 613s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 613s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 613s band 1 6 NA NA NA NA 613s > # names(x) = "L7_ETM" 613s > 613s > # library(abind) 613s > # x = adrop(x) 613s > image(x) 614s > (sfc = st_as_sfc(x, as_points = FALSE)) 614s Geometry set for 400 features 614s Geometry type: POLYGON 614s Dimension: XY 614s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 614s Projected CRS: SIRGAS 2000 / UTM zone 25S 614s First 5 geometries: 614s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 614s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 614s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 614s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 614s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 614s > plot(sfc, add =TRUE) 614s > (sfc = st_as_sfc(x, as_points = TRUE)) 614s Geometry set for 400 features 614s Geometry type: POINT 614s Dimension: XY 614s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 614s Projected CRS: SIRGAS 2000 / UTM zone 25S 614s First 5 geometries: 614s POINT (288790.5 9120747) 614s POINT (288819 9120747) 614s POINT (288847.5 9120747) 614s POINT (288876 9120747) 614s POINT (288904.5 9120747) 614s > plot(sfc, add = TRUE) 614s > 614s > sf = st_as_sf(x, as_points = FALSE) 614s > plot(sf, border = NA) 615s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 615s > plot(sf, border = NA) 615s > 615s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 615s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 615s > identical(sfc1, sfc2) 615s [1] TRUE 615s > 615s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 615s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 616s > identical(sfc1, sfc2) 616s [1] TRUE 616s > 616s > # sf -> stars -> sf 616s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 616s > m = matrix(1:9,3) 616s > colnames(m) = c("a", "b", "c") 616s > foo = st_sf(m, geom = x) 616s > x = st_as_stars(foo) 616s > c(x) 616s stars object with 1 dimensions and 3 attributes 616s attribute(s): 616s Min. 1st Qu. Median Mean 3rd Qu. Max. 616s a 1 1.5 2 2 2.5 3 616s b 4 4.5 5 5 5.5 6 616s c 7 7.5 8 8 8.5 9 616s dimension(s): 616s from to point values 616s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 616s > st_redimension(x) 616s stars object with 2 dimensions and 1 attribute 616s attribute(s): 616s Min. 1st Qu. Median Mean 3rd Qu. Max. 616s a.b.c 1 3 5 5 7 9 616s dimension(s): 616s from to point values 616s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 616s new_dim 1 3 NA a, b, c 616s > c(x, x) 616s stars object with 1 dimensions and 6 attributes 616s attribute(s): 616s Min. 1st Qu. Median Mean 3rd Qu. Max. 616s a 1 1.5 2 2 2.5 3 616s b 4 4.5 5 5 5.5 6 616s c 7 7.5 8 8 8.5 9 616s a.1 1 1.5 2 2 2.5 3 616s b.1 4 4.5 5 5 5.5 6 616s c.1 7 7.5 8 8 8.5 9 616s dimension(s): 616s from to point values 616s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 616s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 616s stars object with 2 dimensions and 1 attribute 616s attribute(s): 616s Min. 1st Qu. Median Mean 3rd Qu. Max. 616s a.b.c 1 3 5 5 7 9 616s dimension(s): 616s from to offset delta refsys point values 616s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 616s time 1 3 2017-11-27 1 days Date NA NULL 616s > st_as_sf(y) 616s Simple feature collection with 3 features and 3 fields 616s Geometry type: POINT 616s Dimension: XY 616s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 616s CRS: NA 616s 2017-11-27 2017-11-28 2017-11-29 geom 616s 1 1 4 7 POINT (0 1) 616s 2 2 5 8 POINT (1 2) 616s 3 3 6 9 POINT (2 3) 616s > st_as_sf(st_as_stars(foo)) 616s Simple feature collection with 3 features and 3 fields 616s Geometry type: POINT 616s Dimension: XY 616s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 616s CRS: NA 616s a b c geom 616s 1 1 4 7 POINT (0 1) 616s 2 2 5 8 POINT (1 2) 616s 3 3 6 9 POINT (2 3) 616s > 616s > c(x,x,along=1) # NEEDS FIXING! 616s stars object with 1 dimensions and 3 attributes 616s attribute(s): 616s Min. 1st Qu. Median Mean 3rd Qu. Max. 616s a 1 1.25 2 2 2.75 3 616s b 4 4.25 5 5 5.75 6 616s c 7 7.25 8 8 8.75 9 616s dimension(s): 616s from to point values 616s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 616s > # st_as_stars.sfc 616s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 616s stars object with 2 dimensions and 1 attribute 616s attribute(s): 616s Min. 1st Qu. Median Mean 3rd Qu. Max. 616s values 0 0 0 0.06 0 1 616s dimension(s): 616s from to offset delta x/y 616s x 1 10 0 0.2 [x] 616s y 1 10 3 -0.2 [y] 616s > 616s BEGIN TEST sp.R 616s 616s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 616s Copyright (C) 2024 The R Foundation for Statistical Computing 616s Platform: aarch64-unknown-linux-gnu 616s 616s R is free software and comes with ABSOLUTELY NO WARRANTY. 616s You are welcome to redistribute it under certain conditions. 616s Type 'license()' or 'licence()' for distribution details. 616s 616s R is a collaborative project with many contributors. 616s Type 'contributors()' for more information and 616s 'citation()' on how to cite R or R packages in publications. 616s 616s Type 'demo()' for some demos, 'help()' for on-line help, or 616s 'help.start()' for an HTML browser interface to help. 616s Type 'q()' to quit R. 616s 617s > options(rgdal_show_exportToProj4_warnings = "none") 617s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 617s + demo(meuse) 617s + # remove +init=xxx 617s + meuse@proj4string = CRS( 617s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 617s + ) 617s + meuse.grid@proj4string = CRS( 617s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 617s + ) 617s + 617s + suppressPackageStartupMessages(library(stars)) 617s + (m = st_as_stars(meuse)) 617s + (gr = st_as_stars(meuse.grid)) 617s + 617s + m2 = as(m, "Spatial") 617s + summary(m2) 617s + gr2 = as(gr, "Spatial") 617s + summary(gr2) 617s + 617s + all.equal(meuse, m2, check.attributes = FALSE) 617s + fullgrid(meuse.grid) = TRUE 617s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 617s + 617s + #all.equal(meuse, m2) 617s + #all.equal(meuse.grid, gr2) 617s + } 618s 618s 618s demo(meuse) 618s ---- ~~~~~ 618s 618s > require(sp) 618s 618s > crs = CRS("EPSG:28992") 620s 620s > data("meuse") 620s 620s > coordinates(meuse) <- ~x+y 620s 620s > proj4string(meuse) <- crs 620s 620s > data("meuse.grid") 620s 620s > coordinates(meuse.grid) <- ~x+y 620s 620s > gridded(meuse.grid) <- TRUE 620s 620s > proj4string(meuse.grid) <- crs 620s 620s > data("meuse.riv") 620s 620s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 620s 620s > proj4string(meuse.riv) <- crs 620s 620s > data("meuse.area") 620s 620s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 620s 620s > proj4string(meuse.area) <- crs 622s [1] TRUE 622s > 622s BEGIN TEST spacetime.R 622s 622s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 622s Copyright (C) 2024 The R Foundation for Statistical Computing 622s Platform: aarch64-unknown-linux-gnu 622s 622s R is free software and comes with ABSOLUTELY NO WARRANTY. 622s You are welcome to redistribute it under certain conditions. 622s Type 'license()' or 'licence()' for distribution details. 622s 622s R is a collaborative project with many contributors. 622s Type 'contributors()' for more information and 622s 'citation()' on how to cite R or R packages in publications. 622s 622s Type 'demo()' for some demos, 'help()' for on-line help, or 622s 'help.start()' for an HTML browser interface to help. 622s Type 'q()' to quit R. 622s 622s > suppressPackageStartupMessages(library(stars)) 625s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 625s + set.seed(1331) 625s + Sys.setenv(TZ="UTC") 625s + example(STFDF) 625s + 625s + x = st_as_stars(stfdf) 625s + xx = as(x, "STFDF") 625s + 625s + # as.xts.stars: 625s + library(xts) 625s + xts = as.xts(x) 625s + st_as_stars(xts) 625s + st_as_stars(xts, dimensions = st_dimensions(x)) 625s + 625s + library(sp) 625s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 625s + gridded(pts) = TRUE 625s + 625s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 625s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 625s + x = st_as_stars(stfdf) 625s + xx = as(x, "STFDF") 625s + 625s + x = st_as_stars(as(stfdf, "STSDF")) 625s + } 627s 627s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 627s 627s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 627s 627s STFDF> library(sp) 627s 627s STFDF> sp = SpatialPoints(sp) 627s 627s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 627s 627s STFDF> m = c(10,20,30) # means for each of the 3 point locations 627s 627s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 627s 627s STFDF> IDs = paste("ID",1:length(mydata)) 627s 627s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 627s 627s STFDF> stfdf = STFDF(sp, time, mydata) 628s 628s STFDF> stfdf 628s An object of class "STFDF" 628s Slot "data": 628s values ID 628s 1 9.38 ID 1 628s 2 21.10 ID 2 628s 3 29.80 ID 3 628s 4 11.50 ID 4 628s 5 19.80 ID 5 628s 6 31.20 ID 6 628s 7 10.40 ID 7 628s 8 20.50 ID 8 628s 9 29.80 ID 9 628s 10 10.30 ID 10 628s 11 21.40 ID 11 628s 12 29.40 ID 12 628s 628s Slot "sp": 628s SpatialPoints: 628s x y 628s point1 0 0 628s point2 0 1 628s point3 1 1 628s Coordinate Reference System (CRS) arguments: NA 628s 628s Slot "time": 628s timeIndex 628s 2010-08-05 10:00:00 1 628s 2010-08-05 11:00:00 2 628s 2010-08-05 12:00:00 3 628s 2010-08-05 13:00:00 4 628s 628s Slot "endTime": 628s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 628s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 628s 628s 628s STFDF> stfdf[1:2,] 628s An object of class "STFDF" 628s Slot "data": 628s values ID 628s 1 9.38 ID 1 628s 2 21.10 ID 2 628s 3 11.50 ID 4 628s 4 19.80 ID 5 628s 5 10.40 ID 7 628s 6 20.50 ID 8 628s 7 10.30 ID 10 628s 8 21.40 ID 11 628s 628s Slot "sp": 628s SpatialPoints: 628s x y 628s point1 0 0 628s point2 0 1 628s Coordinate Reference System (CRS) arguments: NA 628s 628s Slot "time": 628s timeIndex 628s 2010-08-05 10:00:00 1 628s 2010-08-05 11:00:00 2 628s 2010-08-05 12:00:00 3 628s 2010-08-05 13:00:00 4 628s 628s Slot "endTime": 628s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 628s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 628s 628s 628s STFDF> stfdf[,1:2] 628s An object of class "STFDF" 628s Slot "data": 628s values ID 628s 1 9.38 ID 1 628s 2 21.10 ID 2 628s 3 29.80 ID 3 628s 4 11.50 ID 4 628s 5 19.80 ID 5 628s 6 31.20 ID 6 628s 628s Slot "sp": 628s SpatialPoints: 628s x y 628s point1 0 0 628s point2 0 1 628s point3 1 1 628s Coordinate Reference System (CRS) arguments: NA 628s 628s Slot "time": 628s timeIndex 628s 2010-08-05 10:00:00 1 628s 2010-08-05 11:00:00 2 628s 628s Slot "endTime": 628s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 628s 628s 628s STFDF> stfdf[,,2] 628s An object of class "STFDF" 628s Slot "data": 628s ID 628s 1 ID 1 628s 2 ID 2 628s 3 ID 3 628s 4 ID 4 628s 5 ID 5 628s 6 ID 6 628s 7 ID 7 628s 8 ID 8 628s 9 ID 9 628s 10 ID 10 628s 11 ID 11 628s 12 ID 12 628s 628s Slot "sp": 628s SpatialPoints: 628s x y 628s point1 0 0 628s point2 0 1 628s point3 1 1 628s Coordinate Reference System (CRS) arguments: NA 628s 628s Slot "time": 628s timeIndex 628s 2010-08-05 10:00:00 1 628s 2010-08-05 11:00:00 2 628s 2010-08-05 12:00:00 3 628s 2010-08-05 13:00:00 4 628s 628s Slot "endTime": 628s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 628s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 628s 628s 628s STFDF> stfdf[,,"values"] 628s An object of class "STFDF" 628s Slot "data": 628s values 628s 1 9.38 628s 2 21.10 628s 3 29.80 628s 4 11.50 628s 5 19.80 628s 6 31.20 628s 7 10.40 628s 8 20.50 628s 9 29.80 628s 10 10.30 628s 11 21.40 628s 12 29.40 628s 628s Slot "sp": 628s SpatialPoints: 628s x y 628s point1 0 0 628s point2 0 1 628s point3 1 1 628s Coordinate Reference System (CRS) arguments: NA 628s 628s Slot "time": 628s timeIndex 628s 2010-08-05 10:00:00 1 628s 2010-08-05 11:00:00 2 628s 2010-08-05 12:00:00 3 628s 2010-08-05 13:00:00 4 628s 628s Slot "endTime": 628s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 628s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 628s 628s 628s STFDF> stfdf[1,] 628s values ID timeIndex 628s 2010-08-05 10:00:00 9.38 ID 1 1 628s 2010-08-05 11:00:00 11.50 ID 4 2 628s 2010-08-05 12:00:00 10.40 ID 7 3 628s 2010-08-05 13:00:00 10.30 ID 10 4 628s 628s STFDF> stfdf[,2] 628s coordinates values ID 628s 1 (0, 0) 11.5 ID 4 628s 2 (0, 1) 19.8 ID 5 628s 3 (1, 1) 31.2 ID 6 628s 628s STFDF> as(stfdf[,,1], "xts") 628s point1 point2 point3 628s 2010-08-05 10:00:00 9.38 21.1 29.8 628s 2010-08-05 11:00:00 11.50 19.8 31.2 628s 2010-08-05 12:00:00 10.40 20.5 29.8 628s 2010-08-05 13:00:00 10.30 21.4 29.4 628s 628s STFDF> as(stfdf[,,2], "xts") 628s point1 point2 point3 628s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 628s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 628s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 628s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 628s 628s STFDF> # examples for [[, [[<-, $ and $<- 628s STFDF> stfdf[[1]] 628s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 628s 628s STFDF> stfdf[["values"]] 628s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 628s 628s STFDF> stfdf[["newVal"]] <- rnorm(12) 628s 628s STFDF> stfdf$ID 628s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 628s [10] "ID 10" "ID 11" "ID 12" 628s 628s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 628s 628s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 628s 628s STFDF> stfdf 628s An object of class "STFDF" 628s Slot "data": 628s values ID newVal NewID 628s 1 9.38 OldIDs1 -0.3125824 NewIDs12 628s 2 21.10 OldIDs2 -1.0536246 NewIDs11 628s 3 29.80 OldIDs3 -0.7188880 NewIDs10 628s 4 11.50 OldIDs4 -1.0525404 NewIDs9 628s 5 19.80 OldIDs5 -0.8441413 NewIDs8 628s 6 31.20 OldIDs6 1.1420848 NewIDs7 628s 7 10.40 OldIDs7 1.9479070 NewIDs6 628s 8 20.50 OldIDs8 -0.4512836 NewIDs5 628s 9 29.80 OldIDs9 0.6695716 NewIDs4 628s 10 10.30 OldIDs10 0.1269003 NewIDs3 628s 11 21.40 OldIDs11 -0.7273297 NewIDs2 628s 12 29.40 OldIDs12 -0.8151803 NewIDs1 628s 628s Slot "sp": 628s SpatialPoints: 628s x y 628s point1 0 0 628s point2 0 1 628s point3 1 1 628s Coordinate Reference System (CRS) arguments: NA 628s 628s Slot "time": 628s timeIndex 628s 2010-08-05 10:00:00 1 628s 2010-08-05 11:00:00 2 628s 2010-08-05 12:00:00 3 628s 2010-08-05 13:00:00 4 628s 628s Slot "endTime": 628s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 628s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 628s 628s 628s STFDF> x = stfdf[stfdf[1:2,],] 628s 628s STFDF> all.equal(x, stfdf[1:2,]) 628s [1] TRUE 628s 628s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 628s [1] TRUE 629s Loading required package: zoo 629s 629s Attaching package: 'zoo' 629s 629s The following objects are masked from 'package:base': 629s 629s as.Date, as.Date.numeric 629s 629s only the first attribute will used; maybe use merge() first? 630s > 631s BEGIN TEST spatstat.R 631s 631s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 631s Copyright (C) 2024 The R Foundation for Statistical Computing 631s Platform: aarch64-unknown-linux-gnu 631s 631s R is free software and comes with ABSOLUTELY NO WARRANTY. 631s You are welcome to redistribute it under certain conditions. 631s Type 'license()' or 'licence()' for distribution details. 631s 631s R is a collaborative project with many contributors. 631s Type 'contributors()' for more information and 631s 'citation()' on how to cite R or R packages in publications. 631s 631s Type 'demo()' for some demos, 'help()' for on-line help, or 631s 'help.start()' for an HTML browser interface to help. 631s Type 'q()' to quit R. 631s 631s > suppressPackageStartupMessages(library(sf)) 633s > 633s > library(stars) 633s Loading required package: abind 634s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 634s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 634s + s = adrop(read_stars(tif)[,,,1]) > 70 634s + plot(s) 634s + m = as.owin(s) 634s + plot(m) 634s + print(table(m$m)) 634s + } 640s 640s FALSE TRUE 640s 39494 83354 640s > 640s BEGIN TEST stars.R 640s 640s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 640s Copyright (C) 2024 The R Foundation for Statistical Computing 640s Platform: aarch64-unknown-linux-gnu 640s 640s R is free software and comes with ABSOLUTELY NO WARRANTY. 640s You are welcome to redistribute it under certain conditions. 640s Type 'license()' or 'licence()' for distribution details. 640s 640s R is a collaborative project with many contributors. 640s Type 'contributors()' for more information and 640s 'citation()' on how to cite R or R packages in publications. 640s 640s Type 'demo()' for some demos, 'help()' for on-line help, or 640s 'help.start()' for an HTML browser interface to help. 640s Type 'q()' to quit R. 640s 641s > Sys.setenv(TZ="UTC") 641s > suppressPackageStartupMessages(library(stars)) 643s > set.seed(13521) # runif 643s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 643s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 644s stars object with 3 dimensions and 2 attributes 644s attribute(s): 644s Min. 1st Qu. Median Mean 3rd Qu. Max. 644s L7_ETMs.tif 1 54 69 68.91242 86 255 644s L7_ETMs.tif.1 1 54 69 68.91242 86 255 644s dimension(s): 644s from to offset delta refsys point x/y 644s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 644s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 644s band 1 6 NA NA NA NA 644s > (x = read_stars(tif)) 645s stars object with 3 dimensions and 1 attribute 645s attribute(s): 645s Min. 1st Qu. Median Mean 3rd Qu. Max. 645s L7_ETMs.tif 1 54 69 68.91242 86 255 645s dimension(s): 645s from to offset delta refsys point x/y 645s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 645s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 645s band 1 6 NA NA NA NA 645s > # image(x) 645s > gdal_crs(tif) 645s Coordinate Reference System: 645s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 645s wkt: 645s PROJCRS["SIRGAS 2000 / UTM zone 25S", 645s BASEGEOGCRS["SIRGAS 2000", 645s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 645s ELLIPSOID["GRS 1980",6378137,298.257222101, 645s LENGTHUNIT["metre",1]]], 645s PRIMEM["Greenwich",0, 645s ANGLEUNIT["degree",0.0174532925199433]], 645s ID["EPSG",4674]], 645s CONVERSION["UTM zone 25S", 645s METHOD["Transverse Mercator", 645s ID["EPSG",9807]], 645s PARAMETER["Latitude of natural origin",0, 645s ANGLEUNIT["degree",0.0174532925199433], 645s ID["EPSG",8801]], 645s PARAMETER["Longitude of natural origin",-33, 645s ANGLEUNIT["degree",0.0174532925199433], 645s ID["EPSG",8802]], 645s PARAMETER["Scale factor at natural origin",0.9996, 645s SCALEUNIT["unity",1], 645s ID["EPSG",8805]], 645s PARAMETER["False easting",500000, 645s LENGTHUNIT["metre",1], 645s ID["EPSG",8806]], 645s PARAMETER["False northing",10000000, 645s LENGTHUNIT["metre",1], 645s ID["EPSG",8807]]], 645s CS[Cartesian,2], 645s AXIS["easting",east, 645s ORDER[1], 645s LENGTHUNIT["metre",1]], 645s AXIS["northing",north, 645s ORDER[2], 645s LENGTHUNIT["metre",1]], 645s ID["EPSG",31985]] 645s > plot(x) 646s > plot(x, join_zlim = FALSE) 648s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 648s stars object with 3 dimensions and 1 attribute 648s attribute(s): 648s Min. 1st Qu. Median Mean 3rd Qu. Max. 648s L7_ETMs.tif 1 54 69 68.91242 86 255 648s dimension(s): 648s from to offset delta refsys point x/y 648s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 648s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 648s c 1 6 NA NA NA NA 648s > st_get_dimension_values(x, 3) 648s [1] 1 2 3 4 5 6 648s > 648s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 648s stars object with 3 dimensions and 1 attribute 648s attribute(s): 648s Min. 1st Qu. Median Mean 3rd Qu. Max. 648s L7_ETMs.tif 1 54 69 68.91242 86 255 648s dimension(s): 648s from to offset delta refsys point values x/y 648s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 648s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 648s band_number 1 6 NA NA NA TRUE 1,...,7 648s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 648s + units::set_units(um) -> bw # units::set_units(µm) -> bw 648s > # set bandwidth midpoint: 648s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 648s + names = "bandwidth_midpoint", point = TRUE)) 648s stars object with 3 dimensions and 1 attribute 648s attribute(s): 649s Min. 1st Qu. Median Mean 3rd Qu. Max. 649s L7_ETMs.tif 1 54 69 68.91242 86 255 649s dimension(s): 649s from to offset delta refsys point 649s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 649s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 649s bandwidth_midpoint 1 6 NA NA udunits TRUE 649s values x/y 649s x NULL [x] 649s y NULL [y] 649s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 649s > # set bandwidth intervals: 649s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 649s stars object with 3 dimensions and 1 attribute 649s attribute(s): 649s Min. 1st Qu. Median Mean 3rd Qu. Max. 649s L7_ETMs.tif 1 54 69 68.91242 86 255 649s dimension(s): 649s from to offset delta refsys point 649s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 649s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 649s bandwidth 1 6 NA NA udunits NA 649s values x/y 649s x NULL [x] 649s y NULL [y] 649s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 649s > 649s > x + x 649s stars object with 3 dimensions and 1 attribute 649s attribute(s): 650s Min. 1st Qu. Median Mean 3rd Qu. Max. 650s L7_ETMs.tif 2 108 138 137.8248 172 510 650s dimension(s): 650s from to offset delta refsys point x/y 650s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 650s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 650s band 1 6 NA NA NA NA 650s > x * x 650s stars object with 3 dimensions and 1 attribute 650s attribute(s): 650s Min. 1st Qu. Median Mean 3rd Qu. Max. 650s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 650s dimension(s): 650s from to offset delta refsys point x/y 650s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 650s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 650s band 1 6 NA NA NA NA 650s > x[,,,1:3] 650s stars object with 3 dimensions and 1 attribute 650s attribute(s): 650s Min. 1st Qu. Median Mean 3rd Qu. Max. 650s L7_ETMs.tif 21 58 70 70.36041 83 255 650s dimension(s): 651s from to offset delta refsys point x/y 651s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 651s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 651s band 1 3 NA NA NA NA 651s > x[,1:100,100:200,] 651s stars object with 3 dimensions and 1 attribute 651s attribute(s): 651s Min. 1st Qu. Median Mean 3rd Qu. Max. 651s L7_ETMs.tif 13 54 65 67.21531 77 252 651s dimension(s): 651s from to offset delta refsys point x/y 651s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 651s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 651s band 1 6 NA NA NA NA 651s > sqrt(x) 651s stars object with 3 dimensions and 1 attribute 651s attribute(s): 651s Min. 1st Qu. Median Mean 3rd Qu. Max. 651s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 651s dimension(s): 651s from to offset delta refsys point x/y 651s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 651s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 651s band 1 6 NA NA NA NA 651s > st_apply(x, 3, min) 651s stars object with 1 dimensions and 1 attribute 651s attribute(s): 651s Min. 1st Qu. Median Mean 3rd Qu. Max. 651s min 1 3 15 18.5 29.25 47 651s dimension(s): 651s from to 651s band 1 6 651s > st_apply(x, 1:2, max) 652s stars object with 2 dimensions and 1 attribute 652s attribute(s): 652s Min. 1st Qu. Median Mean 3rd Qu. Max. 652s max 55 85 96 99.36018 113 255 652s dimension(s): 653s from to offset delta refsys point x/y 653s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 653s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 653s > st_apply(x, 1:2, range) 656s stars object with 3 dimensions and 1 attribute 656s attribute(s): 656s Min. 1st Qu. Median Mean 3rd Qu. Max. 656s L7_ETMs.tif 1 50 71 72.43565 96 255 656s dimension(s): 656s from to offset delta refsys point x/y 656s range 1 2 NA NA NA NA 656s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 656s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 656s > 656s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 656s > x = read_stars(geomatrix) 656s > y = st_transform(x, st_crs(4326)) 656s > st_coordinates(x)[1:10,] 656s x y 656s 1 1841000 1144000 656s 2 1841002 1143995 656s 3 1841003 1143990 656s 4 1841004 1143985 656s 5 1841006 1143980 656s 6 1841008 1143975 656s 7 1841009 1143970 656s 8 1841010 1143965 656s 9 1841012 1143960 656s 10 1841014 1143955 656s > 656s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 656s > if (nc != "" && require(PCICt, quietly = TRUE)) { 656s + print(x <- read_stars(nc)) 656s + print(st_bbox(x)) 656s + s = st_as_stars(st_bbox(x)) # inside = NA 656s + print(st_bbox(s)) 656s + s = st_as_stars(st_bbox(x), inside = TRUE) 656s + print(st_bbox(s)) 656s + s = st_as_stars(st_bbox(x), inside = FALSE) 656s + print(st_bbox(s)) 656s + (s = st_as_stars(st_bbox(x), dy = 1)) 656s + print(st_bbox(s)) 656s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 656s + s = st_as_stars(st_bbox(x), dx = 10) 656s + print(st_bbox(s)) 656s + s = st_as_stars(st_bbox(x), dx = 20) 656s + print(st_bbox(s)) 656s + x1 = x 656s + st_crs(x1) = "OGC:CRS84" 656s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 656s + 656s + df = as.data.frame(x) 656s + if (require(units, quietly = TRUE)) 656s + print(units::drop_units(x)) 656s + 656s + print(dimnames(x)) 656s + dimnames(x) <- letters[1:3] 656s + print(dimnames(x)) 656s + } # PCICt 656s > 656s > st_as_stars() 656s stars object with 2 dimensions and 1 attribute 656s attribute(s): 656s Min. 1st Qu. Median Mean 3rd Qu. Max. 656s values 0 0 0 0 0 0 656s dimension(s): 657s from to offset delta refsys x/y 657s x 1 360 -180 1 WGS 84 (CRS84) [x] 657s y 1 180 90 -1 WGS 84 (CRS84) [y] 657s > 657s > # multiple sub-datasets: 657s > nc_red = system.file("nc/reduced.nc", package = "stars") 657s > red = read_stars(nc_red) 657s sst, anom, err, ice, 657s > red 657s stars object with 4 dimensions and 4 attributes 657s attribute(s): 657s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 657s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 657s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 657s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 657s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 657s dimension(s): 657s from to offset delta refsys x/y 657s x 1 180 -1 2 NA [x] 657s y 1 90 90 -2 NA [y] 657s zlev 1 1 0 [m] NA NA 657s time 1 1 1981-12-31 UTC NA POSIXct 657s > plot(red) 657s > 657s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 657s > st_bbox(x) 657s xmin ymin xmax ymax 657s 288776.3 9120475.8 289061.3 9120760.8 657s > x = read_stars(tif) 657s > merge(split(x, "band")) 659s stars object with 3 dimensions and 1 attribute 659s attribute(s): 661s Min. 1st Qu. Median Mean 3rd Qu. Max. 661s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 661s dimension(s): 661s from to offset delta refsys point values 661s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 661s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 661s attributes 1 6 NA NA NA NA X1,...,X6 661s x/y 661s x [x] 661s y [y] 661s attributes 661s > 661s > read_stars(c(tif,tif)) # merges as attributes 661s stars object with 3 dimensions and 2 attributes 661s attribute(s): 662s Min. 1st Qu. Median Mean 3rd Qu. Max. 662s L7_ETMs.tif 1 54 69 68.91242 86 255 662s L7_ETMs.tif.1 1 54 69 68.91242 86 255 662s dimension(s): 662s from to offset delta refsys point x/y 662s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 662s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 662s band 1 6 NA NA NA NA 662s > read_stars(c(tif,tif), along = "sensor") 663s stars object with 4 dimensions and 1 attribute 663s attribute(s), summary of first 1e+05 cells: 663s Min. 1st Qu. Median Mean 3rd Qu. Max. 663s L7_ETMs.tif 47 65 76 77.3419 87 255 663s dimension(s): 663s from to offset delta refsys point x/y 663s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 663s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 663s band 1 6 NA NA NA NA 663s sensor 1 2 NA NA NA NA 663s > read_stars(c(tif,tif), along = 4) 663s stars object with 4 dimensions and 1 attribute 663s attribute(s), summary of first 1e+05 cells: 663s Min. 1st Qu. Median Mean 3rd Qu. Max. 663s L7_ETMs.tif 47 65 76 77.3419 87 255 663s dimension(s): 663s from to offset delta refsys point x/y 663s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 663s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 663s band 1 6 NA NA NA NA 663s new_dim 1 2 NA NA NA NA 663s > read_stars(c(tif,tif), along = "band") 663s stars object with 3 dimensions and 1 attribute 663s attribute(s), summary of first 1e+05 cells: 663s Min. 1st Qu. Median Mean 3rd Qu. Max. 663s L7_ETMs.tif 47 65 76 77.3419 87 255 663s dimension(s): 664s from to offset delta refsys point x/y 664s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 664s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 664s band 1 12 NA NA NA NA 664s > read_stars(c(tif,tif), along = 3) 664s stars object with 3 dimensions and 1 attribute 664s attribute(s), summary of first 1e+05 cells: 664s Min. 1st Qu. Median Mean 3rd Qu. Max. 664s L7_ETMs.tif 47 65 76 77.3419 87 255 664s dimension(s): 664s from to offset delta refsys point x/y 664s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 664s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 664s band 1 12 NA NA NA NA 664s > 664s > # cut: 664s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 664s > x = read_stars(tif) 664s > cut(x, c(0, 50, 100, 255)) 664s stars object with 3 dimensions and 1 attribute 664s attribute(s): 665s L7_ETMs.tif 665s (0,50] :156060 665s (50,100] :503764 665s (100,255]: 77264 665s dimension(s): 665s from to offset delta refsys point x/y 665s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 665s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 665s band 1 6 NA NA NA NA 665s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 665s stars object with 2 dimensions and 1 attribute 665s attribute(s): 665s L7_ETMs.tif 665s (0,50] : 1 665s (50,100] :117134 665s (100,255]: 5713 665s dimension(s): 665s from to offset delta refsys point x/y 665s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 665s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 665s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 665s > 665s > st_bbox(st_dimensions(x)) 665s xmin ymin xmax ymax 665s 288776.3 9110728.8 298722.8 9120760.8 665s > x[x < 0] = NA 665s > x[is.na(x)] = 0 665s > 665s > # c: 665s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 665s > if (FALSE && f != "") { 665s + files = c("avhrr-only-v2.19810901.nc", 665s + "avhrr-only-v2.19810902.nc", 665s + "avhrr-only-v2.19810903.nc", 665s + "avhrr-only-v2.19810904.nc", 665s + "avhrr-only-v2.19810905.nc", 665s + "avhrr-only-v2.19810906.nc", 665s + "avhrr-only-v2.19810907.nc", 665s + "avhrr-only-v2.19810908.nc", 665s + "avhrr-only-v2.19810909.nc") 665s + l = list() 665s + for (f in files) { 665s + from = system.file(paste0("netcdf/", f), package = "starsdata") 665s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 665s + } 665s + ret = do.call(c, l) 665s + print(ret) 665s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 665s + print(ret) 665s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 665s + #print(ret) 665s + } 665s > 665s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 665s from to point values 665s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 665s > 665s > if (FALSE && require("starsdata", quietly = TRUE)) { 665s + # curvilinear: 665s + s5p = system.file( 665s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 665s + package = "starsdata") 665s + print(s5p) 665s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 665s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 665s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 665s + lat = read_stars(lat_ds) 665s + lon = read_stars(lon_ds) 665s + nit = read_stars(nit_ds) 665s + nit[[1]][nit[[1]] > 9e+36] = NA 665s + 665s + ll = setNames(c(lon, lat), c("x", "y")) 665s + nit.c = st_as_stars(nit, curvilinear = ll) 665s + print(nit.c) 665s + 665s + s5p = system.file( 665s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 665s + package = "starsdata") 665s + nit.c2 = read_stars(s5p, 665s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 665s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 665s + print(all.equal(nit.c, nit.c2)) 665s + } 665s > 665s BEGIN TEST subset.R 666s 666s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 666s Copyright (C) 2024 The R Foundation for Statistical Computing 666s Platform: aarch64-unknown-linux-gnu 666s 666s R is free software and comes with ABSOLUTELY NO WARRANTY. 666s You are welcome to redistribute it under certain conditions. 666s Type 'license()' or 'licence()' for distribution details. 666s 666s R is a collaborative project with many contributors. 666s Type 'contributors()' for more information and 666s 'citation()' on how to cite R or R packages in publications. 666s 666s Type 'demo()' for some demos, 'help()' for on-line help, or 666s 'help.start()' for an HTML browser interface to help. 666s Type 'q()' to quit R. 666s 666s > suppressPackageStartupMessages(library(stars)) 668s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 668s > x = read_stars(tif) 669s > y = st_set_dimensions(x, "band", point = TRUE) 669s > y[,1:10, 1:10, c(1,4,3,2)] 669s stars object with 3 dimensions and 1 attribute 669s attribute(s): 669s Min. 1st Qu. Median Mean 3rd Qu. Max. 669s L7_ETMs.tif 25 45 57 56.535 64 97 669s dimension(s): 669s from to offset delta refsys point values x/y 669s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 669s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 669s band 1 4 NA NA NA TRUE 1,...,2 669s > y = st_set_dimensions(x, "band", point = NA) 669s > y[,1:10, 1:10, c(1,4,3,2)] 669s stars object with 3 dimensions and 1 attribute 669s attribute(s): 669s Min. 1st Qu. Median Mean 3rd Qu. Max. 669s L7_ETMs.tif 25 45 57 56.535 64 97 669s dimension(s): 669s from to offset delta refsys point values x/y 669s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 669s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 669s band 1 4 NA NA NA NA [1,2),...,[2,3) 669s > y = st_set_dimensions(x, "band", point = FALSE) 669s > y[,1:10, 1:10, c(1,4,3,2)] 669s stars object with 3 dimensions and 1 attribute 669s attribute(s): 669s Min. 1st Qu. Median Mean 3rd Qu. Max. 669s L7_ETMs.tif 25 45 57 56.535 64 97 669s dimension(s): 669s from to offset delta refsys point values x/y 669s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 669s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 669s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 669s > y = st_set_dimensions(x, "band", values = letters[1:6]) 669s > y[,1:10, 1:10, c(1,4,3,2)] 669s stars object with 3 dimensions and 1 attribute 669s attribute(s): 669s Min. 1st Qu. Median Mean 3rd Qu. Max. 669s L7_ETMs.tif 25 45 57 56.535 64 97 669s dimension(s): 670s from to offset delta refsys point values x/y 670s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 670s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 670s band 1 4 NA NA NA NA a,...,b 670s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 670s > y[,1:10, 1:10, c(1,4,3,2)] 670s stars object with 3 dimensions and 1 attribute 670s attribute(s): 670s Min. 1st Qu. Median Mean 3rd Qu. Max. 670s L7_ETMs.tif 25 45 57 56.535 64 97 670s dimension(s): 670s from to offset delta refsys point values x/y 670s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 670s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 670s band 1 4 NA NA NA NA a,...,b 670s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 670s > y[,1:10, 1:10, c(1,4,3,2)] 670s stars object with 3 dimensions and 1 attribute 670s attribute(s): 670s Min. 1st Qu. Median Mean 3rd Qu. Max. 670s L7_ETMs.tif 25 45 57 56.535 64 97 670s dimension(s): 670s from to offset delta refsys point values x/y 670s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 670s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 670s band 1 4 NA NA NA TRUE a,...,b 670s > 670s BEGIN TEST testthat.R 670s 670s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 670s Copyright (C) 2024 The R Foundation for Statistical Computing 670s Platform: aarch64-unknown-linux-gnu 670s 670s R is free software and comes with ABSOLUTELY NO WARRANTY. 670s You are welcome to redistribute it under certain conditions. 670s Type 'license()' or 'licence()' for distribution details. 670s 670s R is a collaborative project with many contributors. 670s Type 'contributors()' for more information and 670s 'citation()' on how to cite R or R packages in publications. 670s 670s Type 'demo()' for some demos, 'help()' for on-line help, or 670s 'help.start()' for an HTML browser interface to help. 670s Type 'q()' to quit R. 670s 671s > ## load dependencies 671s > library(testthat) 672s > suppressPackageStartupMessages(library(stars)) 674s > 674s > ## test package 674s > test_check("stars") 708s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 708s 708s == Skipped tests (5) =========================================================== 708s * On CRAN (4): 'test_ncdf.R:1:1', 'test_ncproxy.R:1:1', 'test_osm.R:4:3', 708s 'test_rectilinear.R:89:3' 708s * cubble cannot be loaded (1): 'test_cubble.R:2:3' 708s 708s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 708s > 709s BEGIN TEST tidy.R 709s 709s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 709s Copyright (C) 2024 The R Foundation for Statistical Computing 709s Platform: aarch64-unknown-linux-gnu 709s 709s R is free software and comes with ABSOLUTELY NO WARRANTY. 709s You are welcome to redistribute it under certain conditions. 709s Type 'license()' or 'licence()' for distribution details. 709s 709s R is a collaborative project with many contributors. 709s Type 'contributors()' for more information and 709s 'citation()' on how to cite R or R packages in publications. 709s 709s Type 'demo()' for some demos, 'help()' for on-line help, or 709s 'help.start()' for an HTML browser interface to help. 709s Type 'q()' to quit R. 709s 709s > suppressPackageStartupMessages(library(stars)) 712s > 712s > if (require(dplyr, quietly = TRUE)) { 712s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 712s + x <- read_stars(tif) 712s + (y <- x %>% select(L7_ETMs.tif)) 712s + (y <- x %>% filter(band > 2)) 712s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 712s + x %>% pull(L7_ETMs.tif) %>% class() 712s + x %>% filter(x > 289900) 712s + x %>% slice("x", 50:100) 712s + 712s + suppressPackageStartupMessages(library(ggplot2)) 712s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 712s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 712s + coord_equal() 712s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 712s + 712s + 712s + # see https://github.com/r-spatial/stars/issues/539 : 712s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 712s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 712s + 712s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 712s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 712s + try(x - slice(y, 'band', 1)) # fails as expected 712s + y - slice(y, 'band', 1) # runs as expected 712s + } 713s 713s Attaching package: 'dplyr' 713s 713s The following objects are masked from 'package:stats': 713s 713s filter, lag 713s 713s The following objects are masked from 'package:base': 713s 713s intersect, setdiff, setequal, union 713s 715s Error in Ops.units(X[[i]], ...) : 715s both operands of the expression should be "units" objects 715s Error in Ops.units(X[[i]], ...) : 715s both operands of the expression should be "units" objects 715s stars object with 3 dimensions and 1 attribute 715s attribute(s): 715s Min. 1st Qu. Median Mean 3rd Qu. Max. 715s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 715s dimension(s): 715s from to offset delta refsys point x/y 715s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 715s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 715s band 1 6 NA NA NA NA 715s > 715s BEGIN TEST transform.R 716s 716s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 716s Copyright (C) 2024 The R Foundation for Statistical Computing 716s Platform: aarch64-unknown-linux-gnu 716s 716s R is free software and comes with ABSOLUTELY NO WARRANTY. 716s You are welcome to redistribute it under certain conditions. 716s Type 'license()' or 'licence()' for distribution details. 716s 716s R is a collaborative project with many contributors. 716s Type 'contributors()' for more information and 716s 'citation()' on how to cite R or R packages in publications. 716s 716s Type 'demo()' for some demos, 'help()' for on-line help, or 716s 'help.start()' for an HTML browser interface to help. 716s Type 'q()' to quit R. 716s 716s > suppressPackageStartupMessages(library(stars)) 719s > suppressPackageStartupMessages(library(lwgeom)) 719s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 719s > (x = read_stars(geomatrix)) 719s stars object with 2 dimensions and 1 attribute 719s attribute(s): 719s Min. 1st Qu. Median Mean 3rd Qu. Max. 719s geomatrix.tif 74 107 123 126.765 132 255 719s dimension(s): 719s from to offset delta refsys point x/y 719s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 719s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 719s sheared raster with parameters: -5 -5 719s > new = st_crs(4326) 719s > y = st_transform(x, new) 719s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 720s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 720s > image(y, add = TRUE) 720s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 720s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 720s > 720s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 720s > x = read_stars(tif)[,1:10,1:10,1:3] 720s > x_ = st_transform(x, st_crs(4326)) 720s > x__ = st_transform_proj(x, st_crs(4326)$proj4string) 720s > st_crs(x_) = st_crs(x__) 720s > all.equal(x_,x__) 720s [1] TRUE 720s > 720s > # x__ = st_transform(x, x_) #now in st_warp 720s > # all.equal(x_, x__) 720s > 720s > x = st_xy2sfc(x, as_points = FALSE) 720s > (x_ = st_transform(x, st_crs(4326))) 720s stars object with 2 dimensions and 1 attribute 720s attribute(s): 720s Min. 1st Qu. Median Mean 3rd Qu. Max. 720s L7_ETMs.tif 25 43 51 50.72 60 74 720s dimension(s): 720s from to refsys point 720s geometry 1 100 WGS 84 FALSE 720s band 1 3 NA NA 720s values 720s geometry POLYGON ((-34.91617 -7.94...,...,POLYGON ((-34.91385 -7.95... 720s band NULL 720s > (x__ = st_transform_proj(x, st_crs(4326))) 720s stars object with 2 dimensions and 1 attribute 720s attribute(s): 720s Min. 1st Qu. Median Mean 3rd Qu. Max. 720s L7_ETMs.tif 25 43 51 50.72 60 74 720s dimension(s): 720s from to refsys point 720s geometry 1 100 WGS 84 FALSE 720s band 1 3 NA NA 720s values 720s geometry POLYGON ((-34.91617 -7.94...,...,POLYGON ((-34.91385 -7.95... 720s band NULL 720s > all.equal(x_,x__,check.attributes = FALSE) 720s [1] TRUE 720s > 720s > # nothing to transform: now errs: 720s > try(st_transform(st_as_stars(list(matrix(1,10,10))), st_crs(4326))) 720s Error in st_transform.stars(st_as_stars(list(matrix(1, 10, 10))), st_crs(4326)) : 720s !is.na(st_crs(x)) is not TRUE 720s > try(st_transform_proj(st_as_stars(list(matrix(1,10,10))), st_crs(4326))) 720s > 720s Error in st_transform_proj.stars(st_as_stars(list(matrix(1, 10, 10))), : 720s !is.na(st_crs(x)) is not TRUE 721s BEGIN TEST warp.R 721s 721s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 721s Copyright (C) 2024 The R Foundation for Statistical Computing 721s Platform: aarch64-unknown-linux-gnu 721s 721s R is free software and comes with ABSOLUTELY NO WARRANTY. 721s You are welcome to redistribute it under certain conditions. 721s Type 'license()' or 'licence()' for distribution details. 721s 721s R is a collaborative project with many contributors. 721s Type 'contributors()' for more information and 721s 'citation()' on how to cite R or R packages in publications. 721s 721s Type 'demo()' for some demos, 'help()' for on-line help, or 721s 'help.start()' for an HTML browser interface to help. 721s Type 'q()' to quit R. 721s 721s > suppressPackageStartupMessages(library(stars)) 724s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 724s > x = read_stars(geomatrix) 724s > # can stars reproduce what gdal does, by default? 724s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 724s > y = st_warp(x, x2) 724s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 724s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 724s > names(x2) = names(y) 724s > all.equal(x2, y) # yes? 724s [1] TRUE 724s > 724s > # does gdal reproduce with stars template object? 724s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 724s stars object with 2 dimensions and 1 attribute 724s attribute(s): 724s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 724s file.tif 74 115 123 126.4289 132 255 224 724s dimension(s): 724s from to offset delta refsys point x/y 724s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 724s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 724s > 724s > # does gdal reproduce what stars does, default cell size? 724s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 725s stars object with 2 dimensions and 1 attribute 725s attribute(s): 725s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 725s geomatrix.tif 74 115 123 126.4289 132 255 224 725s dimension(s): 725s from to offset delta refsys x/y 725s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 725s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 725s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 725s stars object with 2 dimensions and 1 attribute 725s attribute(s): 725s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 725s file.tif 74 115 123 126.4289 132 255 224 725s dimension(s): 725s from to offset delta refsys point x/y 725s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 725s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 725s > 725s > # try with multiple bands: 725s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 725s > (x1 = read_stars(tif)) 725s stars object with 3 dimensions and 1 attribute 725s attribute(s): 725s Min. 1st Qu. Median Mean 3rd Qu. Max. 725s L7_ETMs.tif 1 54 69 68.91242 86 255 725s dimension(s): 726s from to offset delta refsys point x/y 726s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 726s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 726s band 1 6 NA NA NA NA 726s > tifcp = tempfile(fileext = ".tif") 726s > file.copy(tif, tifcp) 726s [1] TRUE 726s > x1p = read_stars(tifcp, proxy = TRUE) 726s > st_dimensions(x1p) 726s from to offset delta refsys point x/y 726s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 726s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 726s band 1 6 NA NA NA NA 726s > (x1a = st_warp(x1, crs = st_crs(4326))) 726s stars object with 3 dimensions and 1 attribute 726s attribute(s): 727s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 727s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 727s dimension(s): 727s from to offset delta refsys x/y 727s x 1 350 -34.92 0.0002592 WGS 84 [x] 727s y 1 352 -7.95 -0.0002592 WGS 84 [y] 727s band 1 6 NA NA NA 727s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 727s stars object with 3 dimensions and 1 attribute 727s attribute(s): 727s Min. 1st Qu. Median Mean 3rd Qu. Max. 727s file.tif 1 54 69 68.91242 86 255 727s dimension(s): 728s from to offset delta refsys point x/y 728s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 728s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 728s band 1 6 NA NA NA NA 728s > 728s > # does gdal reproduce what stars does? Smaller grid: 728s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3)) 728s stars object with 2 dimensions and 1 attribute 728s attribute(s): 728s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 728s geomatrix.tif 74 107 123 126.7262 132 255 727 728s dimension(s): 728s from to offset delta refsys x/y 728s x 1 44 1840902 3 WGS 84 / UTM zone 11N [x] 728s y 1 44 1144003 -3 WGS 84 / UTM zone 11N [y] 728s > # x2 = x2[,2:43,2:43] 728s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 728s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 728s > ### doesn't work: FIXME: check with more recent GDAL: 728s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 728s stars object with 2 dimensions and 1 attribute 728s attribute(s): 728s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 728s file.tif 74 107 123 126.6584 132 255 727 728s dimension(s): 728s from to offset delta refsys point x/y 728s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 728s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 728s > if (interactive()) { plot(y, breaks = "equal") } 728s > names(x2) = names(y) 728s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 728s > mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 728s [1] 0.9975186 728s > unique(as.vector(x2[[1]]-y[[1]])) 728s [1] NA 0 25 49 8 728s > 728s > g = st_as_stars() 728s > attr(g, "dimensions")$x$offset = 0 728s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 728s > if (interactive()) { plot(g, axes=TRUE) } 728s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 728s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 728s > all.equal(a, b, check.attributes = FALSE) 728s [1] TRUE 728s > 728s BEGIN TEST write.R 729s 729s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 729s Copyright (C) 2024 The R Foundation for Statistical Computing 729s Platform: aarch64-unknown-linux-gnu 729s 729s R is free software and comes with ABSOLUTELY NO WARRANTY. 729s You are welcome to redistribute it under certain conditions. 729s Type 'license()' or 'licence()' for distribution details. 729s 729s R is a collaborative project with many contributors. 729s Type 'contributors()' for more information and 729s 'citation()' on how to cite R or R packages in publications. 729s 729s Type 'demo()' for some demos, 'help()' for on-line help, or 729s 'help.start()' for an HTML browser interface to help. 729s Type 'q()' to quit R. 729s 729s > suppressPackageStartupMessages(library(stars)) 732s > 732s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 732s > (x = read_stars(tif)) 732s stars object with 3 dimensions and 1 attribute 732s attribute(s): 732s Min. 1st Qu. Median Mean 3rd Qu. Max. 732s L7_ETMs.tif 1 54 69 68.91242 86 255 732s dimension(s): 732s from to offset delta refsys point x/y 732s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 732s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 732s band 1 6 NA NA NA NA 732s > 732s > # write stars object: 732s > write_stars(x, tempfile(), driver = "GTiff") 732s > 732s > # write stars_proxy object: 732s > (x = read_stars(tif, proxy = TRUE)) 732s stars_proxy object with 1 attribute in 1 file(s): 733s $L7_ETMs.tif 733s [1] "[...]/L7_ETMs.tif" 733s 733s dimension(s): 733s from to offset delta refsys point x/y 733s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 733s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 733s band 1 6 NA NA NA NA 733s > write_stars(x, tempfile(), driver = "GTiff") 733s 733s > 733s autopkgtest [09:38:52]: test run-unit-test: -----------------------] 735s run-unit-test PASS 735s autopkgtest [09:38:54]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 735s autopkgtest [09:38:54]: test pkg-r-autopkgtest: preparing testbed 867s autopkgtest [09:41:06]: testbed dpkg architecture: arm64 867s autopkgtest [09:41:06]: testbed apt version: 2.9.3 867s autopkgtest [09:41:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 868s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 869s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [507 kB] 870s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3388 B] 870s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 870s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [57.4 kB] 870s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [177 kB] 870s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [12.3 kB] 870s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [505 kB] 870s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [2532 B] 870s Fetched 1341 kB in 2s (855 kB/s) 870s Reading package lists... 874s Reading package lists... 875s Building dependency tree... 875s Reading state information... 876s Calculating upgrade... 877s The following packages will be upgraded: 877s libclang-cpp18 libclang1-18 libllvm18 878s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 878s Need to get 47.0 MB of archives. 878s After this operation, 1054 kB of additional disk space will be used. 878s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 libclang-cpp18 arm64 1:18.1.6-1 [13.2 MB] 880s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libllvm18 arm64 1:18.1.6-1 [26.3 MB] 882s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libclang1-18 arm64 1:18.1.6-1 [7531 kB] 883s Fetched 47.0 MB in 5s (10.3 MB/s) 883s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78364 files and directories currently installed.) 883s Preparing to unpack .../libclang-cpp18_1%3a18.1.6-1_arm64.deb ... 883s Unpacking libclang-cpp18 (1:18.1.6-1) over (1:18.1.3-1) ... 885s Preparing to unpack .../libllvm18_1%3a18.1.6-1_arm64.deb ... 885s Unpacking libllvm18:arm64 (1:18.1.6-1) over (1:18.1.3-1) ... 886s Preparing to unpack .../libclang1-18_1%3a18.1.6-1_arm64.deb ... 886s Unpacking libclang1-18 (1:18.1.6-1) over (1:18.1.3-1) ... 887s Setting up libllvm18:arm64 (1:18.1.6-1) ... 887s Setting up libclang1-18 (1:18.1.6-1) ... 887s Setting up libclang-cpp18 (1:18.1.6-1) ... 887s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 888s Reading package lists... 888s Building dependency tree... 888s Reading state information... 890s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 891s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 891s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 891s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 891s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 895s Reading package lists... 895s Reading package lists... 895s Building dependency tree... 895s Reading state information... 897s Calculating upgrade... 898s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 898s Reading package lists... 898s Building dependency tree... 898s Reading state information... 900s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 905s Reading package lists... 906s Building dependency tree... 906s Reading state information... 907s Starting pkgProblemResolver with broken count: 0 907s Starting 2 pkgProblemResolver with broken count: 0 907s Done 909s The following additional packages will be installed: 909s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 909s dctrl-tools fontconfig fonts-font-awesome fonts-glyphicons-halflings 909s fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 909s gcc-13 gcc-13-aarch64-linux-gnu gcc-13-base gcc-aarch64-linux-gnu gdal-data 909s gdal-plugins gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 909s gfortran-aarch64-linux-gnu icu-devtools javascript-common libaec0 909s libarmadillo12 libarpack2t64 libasan8 libatomic1 libblas-dev libblas3 909s libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1 909s libdeflate-dev libfreexl1 libfyba0t64 libgcc-13-dev libgdal34t64 909s libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 libgfortran-13-dev libgfortran5 909s libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 909s libhdf5-hl-100t64 libhwasan0 libice6 libicu-dev libisl23 libitm1 libjpeg-dev 909s libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 909s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 909s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 909s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 909s libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1t64 909s libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 liblcms2-2 liblsan0 909s libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 libmpc3 libmysqlclient21 909s libncurses-dev libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 909s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 909s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 909s libpixman-1-0 libpkgconf3 libpng-dev libpoppler134 libpq5 libproj25 909s libqhull-r8.0 libreadline-dev librttopo1 libsm6 libsnappy1v5 909s libspatialite8t64 libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data 909s libthai0 libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 909s libudunits2-data liburiparser1 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 909s libxft2 libxrender1 libxss1 libxt6t64 littler mysql-common 909s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 909s pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core r-base-dev 909s r-cran-abind r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix 909s r-cran-brio r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr 909s r-cran-class r-cran-classint r-cran-cli r-cran-clue r-cran-cluster 909s r-cran-codetools r-cran-collapse r-cran-colorspace r-cran-commonmark 909s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 909s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 909s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn 909s r-cran-fontawesome r-cran-formula r-cran-fs r-cran-future 909s r-cran-future.apply r-cran-generics r-cran-ggforce r-cran-ggplot2 909s r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest r-cran-gridextra 909s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 909s r-cran-intervals r-cran-isoband r-cran-jquerylib r-cran-jsonlite 909s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 909s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest 909s r-cran-lwgeom r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass 909s r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime 909s r-cran-misctools r-cran-munsell r-cran-ncdfgeom r-cran-ncmeta r-cran-nlme 909s r-cran-openssl r-cran-parallelly r-cran-pbapply r-cran-pcict r-cran-pillar 909s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm 909s r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises r-cran-proxy 909s r-cran-ps r-cran-purrr r-cran-r6 r-cran-randomforest r-cran-rappdirs 909s r-cran-raster r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 909s r-cran-rcppeigen r-cran-rdpack r-cran-rematch2 r-cran-rex r-cran-rlang 909s r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot r-cran-s2 909s r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-shiny 909s r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 909s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 909s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 909s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stars r-cran-stringi 909s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 909s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 909s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 909s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 909s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 909s unzip x11-common xdg-utils zip zlib1g-dev 909s Suggested packages: 909s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 909s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 909s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 909s | lighttpd | httpd liblapack-doc geotiff-bin gdal-bin libgeotiff-epsg 909s libhdf4-alt-dev hdf4-tools icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 909s fonts-stix libjs-mathjax-doc liblcms2-utils liblzma-doc ncurses-doc 909s odbc-postgresql tdsodbc ogdi-bin proj-bin readline-doc libstdc++-13-doc 909s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 909s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 909s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 909s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base 909s texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra 909s texlive-extra-utils texinfo r-cran-png r-cran-lpsolve r-cran-quadprog 909s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg 909s r-cran-rstudioapi r-cran-rmysql r-cran-sessioninfo r-cran-reshape2 909s r-cran-magick r-cran-getopt r-cran-mapproj r-cran-tinytest r-cran-bit64 909s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-vdiffr 909s r-cran-roxygen2 r-cran-inline r-cran-hmisc r-cran-rvest r-cran-spelling 909s r-cran-bench r-cran-blob r-cran-here r-cran-hms 909s Recommended packages: 909s bzip2-doc proj-bin node-jquery libpng-tools poppler-data r-recommended 909s r-doc-html r-cran-thematic r-cran-mockery r-cran-spelling r-cran-spdata 909s r-cran-tinytest r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami 909s r-cran-data.table r-cran-rcpparmadillo r-cran-xml2 r-cran-dt r-cran-bench 909s r-cran-decor r-cran-lobstr r-cran-progress r-cran-webutils r-cran-gh 909s r-cran-broom r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite 909s r-cran-unitizer r-cran-rsvg r-cran-rhpcblasctl r-cran-r.rsp r-cran-markdown 909s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-multcomp r-cran-profvis 909s r-cran-quantreg r-cran-ragg r-cran-svglite r-cran-vdiffr r-cran-lintr 909s r-cran-pander r-cran-testit r-cran-jpeg r-cran-png r-cran-readr 909s r-cran-formatr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 909s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-tidyverse 909s r-cran-r.utils r-cran-geosphere r-cran-runit r-cran-pkgdown r-cran-zip 909s r-cran-ncdf4 r-cran-sodium r-cran-lubridate r-cran-bitops r-cran-mathjaxr 909s r-cran-mockr r-cran-remotes r-cran-aer r-cran-car r-cran-spdep 909s r-cran-statmod r-cran-urca r-cran-foreign r-cran-bookdown r-cran-webfakes 909s r-cran-cba r-cran-pingr r-cran-igraph r-cran-gstat r-cran-fields 909s r-cran-exactextractr r-cran-gbrd r-cran-usethis r-cran-dygraphs 909s r-cran-rsconnect r-cran-downlit r-cran-bit64 r-cran-dichromat r-cran-hms 909s r-cran-blob r-cran-nanoarrow r-cran-googlevis r-cran-isocodes r-cran-sftime 909s r-cran-sm r-cran-gsl r-cran-locfit r-cran-spatial r-cran-nleqslv 909s r-cran-glmnet r-cran-cubelyr r-cran-xml r-cran-formattable r-cran-zeallot 909s r-cran-renv r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron 909s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 909s x11-xserver-utils 910s The following NEW packages will be installed: 910s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 910s cpp-aarch64-linux-gnu dctrl-tools fontconfig fonts-font-awesome 910s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 910s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-13-base 910s gcc-aarch64-linux-gnu gdal-data gdal-plugins gfortran gfortran-13 910s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 910s javascript-common libaec0 libarmadillo12 libarpack2t64 libasan8 libatomic1 910s libblas-dev libblas3 libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 910s libdatrie1 libdeflate-dev libfreexl1 libfyba0t64 libgcc-13-dev libgdal34t64 910s libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 libgfortran-13-dev libgfortran5 910s libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 910s libhdf5-hl-100t64 libhwasan0 libice6 libicu-dev libisl23 libitm1 libjpeg-dev 910s libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 910s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 910s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 910s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 910s libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1t64 910s libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 liblcms2-2 liblsan0 910s libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 libmpc3 libmysqlclient21 910s libncurses-dev libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 910s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 910s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 910s libpixman-1-0 libpkgconf3 libpng-dev libpoppler134 libpq5 libproj25 910s libqhull-r8.0 libreadline-dev librttopo1 libsm6 libsnappy1v5 910s libspatialite8t64 libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data 910s libthai0 libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 910s libudunits2-data liburiparser1 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 910s libxft2 libxrender1 libxss1 libxt6t64 littler mysql-common 910s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 910s pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core r-base-dev 910s r-cran-abind r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix 910s r-cran-brio r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr 910s r-cran-class r-cran-classint r-cran-cli r-cran-clue r-cran-cluster 910s r-cran-codetools r-cran-collapse r-cran-colorspace r-cran-commonmark 910s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 910s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 910s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn 910s r-cran-fontawesome r-cran-formula r-cran-fs r-cran-future 910s r-cran-future.apply r-cran-generics r-cran-ggforce r-cran-ggplot2 910s r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest r-cran-gridextra 910s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 910s r-cran-intervals r-cran-isoband r-cran-jquerylib r-cran-jsonlite 910s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 910s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest 910s r-cran-lwgeom r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass 910s r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime 910s r-cran-misctools r-cran-munsell r-cran-ncdfgeom r-cran-ncmeta r-cran-nlme 910s r-cran-openssl r-cran-parallelly r-cran-pbapply r-cran-pcict r-cran-pillar 910s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm 910s r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises r-cran-proxy 910s r-cran-ps r-cran-purrr r-cran-r6 r-cran-randomforest r-cran-rappdirs 910s r-cran-raster r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 910s r-cran-rcppeigen r-cran-rdpack r-cran-rematch2 r-cran-rex r-cran-rlang 910s r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot r-cran-s2 910s r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-shiny 910s r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 910s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 910s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 910s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stars r-cran-stringi 910s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 910s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 910s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 910s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 910s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 910s unzip x11-common xdg-utils zip zlib1g-dev 910s 0 upgraded, 322 newly installed, 0 to remove and 0 not upgraded. 910s Need to get 361 MB/361 MB of archives. 910s After this operation, 1069 MB of additional disk space will be used. 910s Get:1 /tmp/autopkgtest.PhjGwe/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [908 B] 910s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-13-base arm64 13.2.0-23ubuntu4 [49.0 kB] 910s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libisl23 arm64 0.26-3build1 [669 kB] 910s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libmpc3 arm64 1.3.1-1build1 [56.4 kB] 910s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [10.3 MB] 911s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-13 arm64 13.2.0-23ubuntu4 [1032 B] 911s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 911s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 911s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 libcc1-0 arm64 14.1.0-1ubuntu1 [49.4 kB] 911s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB] 911s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libitm1 arm64 14.1.0-1ubuntu1 [27.9 kB] 911s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14.1.0-1ubuntu1 [11.4 kB] 911s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 libasan8 arm64 14.1.0-1ubuntu1 [2922 kB] 911s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 liblsan0 arm64 14.1.0-1ubuntu1 [1286 kB] 911s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libtsan2 arm64 14.1.0-1ubuntu1 [2692 kB] 911s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libubsan1 arm64 14.1.0-1ubuntu1 [1155 kB] 911s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libhwasan0 arm64 14.1.0-1ubuntu1 [1604 kB] 911s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-13-dev arm64 13.2.0-23ubuntu4 [2470 kB] 911s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [20.1 MB] 912s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-13 arm64 13.2.0-23ubuntu4 [472 kB] 912s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 912s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 912s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++-13-dev arm64 13.2.0-23ubuntu4 [2379 kB] 913s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [11.7 MB] 913s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-13 arm64 13.2.0-23ubuntu4 [14.5 kB] 913s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 913s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 913s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 913s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 913s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 913s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 913s Get:32 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 913s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 913s Get:34 http://ftpmaster.internal/ubuntu oracular/universe arm64 gdal-data all 3.8.5+dfsg-1 [261 kB] 913s Get:35 http://ftpmaster.internal/ubuntu oracular/universe arm64 gdal-plugins arm64 3.8.5+dfsg-1 [24.6 kB] 913s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB] 913s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran-13-dev arm64 13.2.0-23ubuntu4 [478 kB] 913s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [10.8 MB] 914s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran-13 arm64 13.2.0-23ubuntu4 [11.7 kB] 914s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 914s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 914s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 icu-devtools arm64 74.2-1ubuntu3 [209 kB] 914s Get:43 http://ftpmaster.internal/ubuntu oracular/main arm64 javascript-common all 11+nmu1 [5936 B] 914s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 914s Get:45 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 914s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 914s Get:47 http://ftpmaster.internal/ubuntu oracular/universe arm64 libarpack2t64 arm64 3.9.1-1.1build2 [90.6 kB] 914s Get:48 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1build1 [166 kB] 914s Get:49 http://ftpmaster.internal/ubuntu oracular/universe arm64 libarmadillo12 arm64 1:12.8.2+dfsg-1 [105 kB] 914s Get:50 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas-dev arm64 3.12.0-3build1 [111 kB] 914s Get:51 http://ftpmaster.internal/ubuntu oracular/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB] 914s Get:52 http://ftpmaster.internal/ubuntu oracular/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB] 914s Get:53 http://ftpmaster.internal/ubuntu oracular/main arm64 libbz2-dev arm64 1.0.8-5.1 [35.8 kB] 914s Get:54 http://ftpmaster.internal/ubuntu oracular/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 914s Get:55 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 914s Get:56 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 914s Get:57 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 914s Get:58 http://ftpmaster.internal/ubuntu oracular/main arm64 libcairo2 arm64 1.18.0-3build1 [555 kB] 914s Get:59 http://ftpmaster.internal/ubuntu oracular/universe arm64 libcfitsio10t64 arm64 4.3.1-1.1build2 [520 kB] 914s Get:60 http://ftpmaster.internal/ubuntu oracular/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 914s Get:61 http://ftpmaster.internal/ubuntu oracular/main arm64 libdeflate-dev arm64 1.20-1 [53.2 kB] 914s Get:62 http://ftpmaster.internal/ubuntu oracular/universe arm64 libfyba0t64 arm64 4.1.1-11build1 [120 kB] 914s Get:63 http://ftpmaster.internal/ubuntu oracular/universe arm64 libminizip1t64 arm64 1:1.3.dfsg-3.1ubuntu2 [22.7 kB] 914s Get:64 http://ftpmaster.internal/ubuntu oracular/universe arm64 libfreexl1 arm64 2.0.0-1build2 [41.9 kB] 914s Get:65 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgeos3.12.1t64 arm64 3.12.1-3build1 [828 kB] 914s Get:66 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgeos-c1t64 arm64 3.12.1-3build1 [88.7 kB] 914s Get:67 http://ftpmaster.internal/ubuntu oracular/universe arm64 proj-data all 9.4.0-1build2 [7885 kB] 915s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 libproj25 arm64 9.4.0-1build2 [1293 kB] 915s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgeotiff5 arm64 1.7.1-5build1 [60.3 kB] 915s Get:70 http://ftpmaster.internal/ubuntu oracular/main arm64 libgif7 arm64 5.2.2-1ubuntu1 [35.5 kB] 915s Get:71 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 915s Get:72 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf4-0-alt arm64 4.3.0-1 [271 kB] 915s Get:73 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [1192 kB] 915s Get:74 http://ftpmaster.internal/ubuntu oracular/universe arm64 liburiparser1 arm64 0.9.7+dfsg-2build1 [35.4 kB] 915s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 libkmlbase1t64 arm64 1.3.0-12build1 [47.8 kB] 915s Get:76 http://ftpmaster.internal/ubuntu oracular/universe arm64 libkmldom1t64 arm64 1.3.0-12build1 [146 kB] 915s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 libkmlengine1t64 arm64 1.3.0-12build1 [68.1 kB] 915s Get:78 http://ftpmaster.internal/ubuntu oracular/main arm64 mysql-common all 5.8+1.1.0build1 [6746 B] 915s Get:79 http://ftpmaster.internal/ubuntu oracular/main arm64 libmysqlclient21 arm64 8.0.37-1 [1244 kB] 915s Get:80 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu4 [55.8 kB] 915s Get:81 http://ftpmaster.internal/ubuntu oracular/universe arm64 libnetcdf19t64 arm64 1:4.9.2-5ubuntu4 [471 kB] 915s Get:82 http://ftpmaster.internal/ubuntu oracular/main arm64 libltdl7 arm64 2.4.7-7build1 [40.4 kB] 915s Get:83 http://ftpmaster.internal/ubuntu oracular/main arm64 libodbc2 arm64 2.3.12-1build2 [145 kB] 915s Get:84 http://ftpmaster.internal/ubuntu oracular/main arm64 unixodbc-common all 2.3.12-1build2 [8646 B] 915s Get:85 http://ftpmaster.internal/ubuntu oracular/main arm64 libodbcinst2 arm64 2.3.12-1build2 [29.6 kB] 915s Get:86 http://ftpmaster.internal/ubuntu oracular/universe arm64 libogdi4.1 arm64 4.1.1+ds-4 [211 kB] 915s Get:87 http://ftpmaster.internal/ubuntu oracular/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB] 915s Get:88 http://ftpmaster.internal/ubuntu oracular/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] 915s Get:89 http://ftpmaster.internal/ubuntu oracular/main arm64 libpoppler134 arm64 24.02.0-1ubuntu9 [1072 kB] 915s Get:90 http://ftpmaster.internal/ubuntu oracular/main arm64 libpq5 arm64 16.2-1ubuntu4 [137 kB] 915s Get:91 http://ftpmaster.internal/ubuntu oracular/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 915s Get:92 http://ftpmaster.internal/ubuntu oracular/universe arm64 librttopo1 arm64 1.1.0-3build2 [187 kB] 915s Get:93 http://ftpmaster.internal/ubuntu oracular/universe arm64 libspatialite8t64 arm64 5.1.0-3build1 [1814 kB] 915s Get:94 http://ftpmaster.internal/ubuntu oracular/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3 [874 kB] 915s Get:95 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgdal34t64 arm64 3.8.5+dfsg-1 [7904 kB] 916s Get:96 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2build1 [70.8 kB] 916s Get:97 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB] 916s Get:98 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 916s Get:99 http://ftpmaster.internal/ubuntu oracular/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 916s Get:100 http://ftpmaster.internal/ubuntu oracular/main arm64 libicu-dev arm64 74.2-1ubuntu3 [11.9 MB] 916s Get:101 http://ftpmaster.internal/ubuntu oracular/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 916s Get:102 http://ftpmaster.internal/ubuntu oracular/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 916s Get:103 http://ftpmaster.internal/ubuntu oracular/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 916s Get:104 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 917s Get:105 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 917s Get:106 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 917s Get:107 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 917s Get:108 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 917s Get:109 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 917s Get:110 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 917s Get:111 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 917s Get:112 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 917s Get:113 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 917s Get:114 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 917s Get:115 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 917s Get:116 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 917s Get:117 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 917s Get:118 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack-dev arm64 3.12.0-3build1 [4293 kB] 917s Get:119 http://ftpmaster.internal/ubuntu oracular/main arm64 liblua5.4-0 arm64 5.4.6-3build2 [158 kB] 917s Get:120 http://ftpmaster.internal/ubuntu oracular/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu2 [385 kB] 917s Get:121 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 917s Get:122 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 917s Get:123 http://ftpmaster.internal/ubuntu oracular/main arm64 libpango-1.0-0 arm64 1.52.2+ds-1 [230 kB] 917s Get:124 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangoft2-1.0-0 arm64 1.52.2+ds-1 [41.9 kB] 917s Get:125 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangocairo-1.0-0 arm64 1.52.2+ds-1 [27.2 kB] 917s Get:126 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB] 917s Get:127 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B] 917s Get:128 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu2 [196 kB] 917s Get:129 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu2 [184 kB] 917s Get:130 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu2 [6642 B] 917s Get:131 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-dev arm64 10.42-4ubuntu2 [680 kB] 917s Get:132 http://ftpmaster.internal/ubuntu oracular/main arm64 libpkgconf3 arm64 1.8.1-2build1 [31.2 kB] 917s Get:133 http://ftpmaster.internal/ubuntu oracular/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB] 917s Get:134 http://ftpmaster.internal/ubuntu oracular/main arm64 libpng-dev arm64 1.6.43-5build1 [266 kB] 917s Get:135 http://ftpmaster.internal/ubuntu oracular/main arm64 libreadline-dev arm64 8.2-4build1 [177 kB] 917s Get:136 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 917s Get:137 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 917s Get:138 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 917s Get:139 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 917s Get:140 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 917s Get:141 http://ftpmaster.internal/ubuntu oracular/universe arm64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 917s Get:142 http://ftpmaster.internal/ubuntu oracular/universe arm64 libudunits2-0 arm64 2.2.28-7build1 [52.8 kB] 917s Get:143 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 917s Get:144 http://ftpmaster.internal/ubuntu oracular/main arm64 zip arm64 3.0-13build1 [171 kB] 918s Get:145 http://ftpmaster.internal/ubuntu oracular/main arm64 unzip arm64 6.0-28ubuntu4 [171 kB] 918s Get:146 http://ftpmaster.internal/ubuntu oracular/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 918s Get:147 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-base-core arm64 4.4.0-2 [28.3 MB] 919s Get:148 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-littler arm64 0.3.20-1 [96.4 kB] 919s Get:149 http://ftpmaster.internal/ubuntu oracular/universe arm64 littler all 0.3.20-1 [2486 B] 919s Get:150 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 919s Get:151 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 919s Get:152 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 919s Get:153 http://ftpmaster.internal/ubuntu oracular/universe arm64 pandoc-data all 3.1.3-2build2 [78.3 kB] 919s Get:154 http://ftpmaster.internal/ubuntu oracular/universe arm64 pandoc arm64 3.1.3+ds-3build1 [27.7 MB] 919s Get:155 http://ftpmaster.internal/ubuntu oracular/main arm64 liblzma-dev arm64 5.6.1+really5.4.5-1 [178 kB] 919s Get:156 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf-bin arm64 1.8.1-2build1 [20.5 kB] 919s Get:157 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf arm64 1.8.1-2build1 [16.8 kB] 919s Get:158 http://ftpmaster.internal/ubuntu oracular/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 920s Get:159 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-base-dev all 4.4.0-2 [4340 B] 920s Get:160 http://ftpmaster.internal/ubuntu oracular/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 920s Get:161 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 920s Get:162 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 920s Get:163 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 920s Get:164 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 920s Get:165 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 920s Get:166 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 920s Get:167 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 920s Get:168 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 920s Get:169 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 920s Get:170 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 920s Get:171 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 920s Get:172 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 920s Get:173 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 920s Get:174 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 920s Get:175 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 920s Get:176 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 920s Get:177 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 920s Get:178 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 920s Get:179 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mass arm64 7.3-60.2-1 [1109 kB] 920s Get:180 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-class arm64 7.3-22-2build1 [88.3 kB] 920s Get:181 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 920s Get:182 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 920s Get:183 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-kernsmooth arm64 2.23-24-1 [92.6 kB] 920s Get:184 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 920s Get:185 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 920s Get:186 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 920s Get:187 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 920s Get:188 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 920s Get:189 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-s2 arm64 1.1.6-1build2 [1947 kB] 920s Get:190 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 920s Get:191 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sf arm64 1.0-16+dfsg-1 [3023 kB] 920s Get:192 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 920s Get:193 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 920s Get:194 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 920s Get:195 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 920s Get:196 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bdsmatrix arm64 1.3-7-1 [300 kB] 920s Get:197 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 920s Get:198 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 920s Get:199 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 920s Get:200 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-digest arm64 0.6.35-1 [195 kB] 920s Get:201 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 920s Get:202 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 920s Get:203 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 921s Get:204 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 921s Get:205 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 921s Get:206 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1build2 [228 kB] 921s Get:207 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 921s Get:208 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 921s Get:209 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 921s Get:210 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cairo arm64 1.6-2-1 [89.0 kB] 921s Get:211 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 921s Get:212 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 921s Get:213 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 921s Get:214 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cluster arm64 2.1.6-1build1 [551 kB] 921s Get:215 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-clue arm64 0.3-65-1 [959 kB] 921s Get:216 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 921s Get:217 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-collapse arm64 2.0.13-1 [3048 kB] 921s Get:218 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 922s Get:219 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 922s Get:220 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 922s Get:221 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 922s Get:222 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1build2 [176 kB] 922s Get:223 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2build2 [402 kB] 922s Get:224 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 922s Get:225 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 922s Get:226 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-yaml arm64 2.3.8-2 [108 kB] 922s Get:227 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 922s Get:228 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 922s Get:229 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 922s Get:230 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 922s Get:231 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 922s Get:232 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 922s Get:233 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-farver arm64 2.1.1-2 [1340 kB] 922s Get:234 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fnn arm64 1.1.4-1 [121 kB] 922s Get:235 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 922s Get:236 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 922s Get:237 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-globals all 0.16.3-1 [120 kB] 922s Get:238 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 922s Get:239 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-parallelly arm64 1.37.1-1build1 [365 kB] 922s Get:240 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 922s Get:241 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 922s Get:242 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 922s Get:243 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 922s Get:244 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 922s Get:245 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-nlme arm64 3.1.164-1build1 [2264 kB] 922s Get:246 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 922s Get:247 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 922s Get:248 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 922s Get:249 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 922s Get:250 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 922s Get:251 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 923s Get:252 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 923s Get:253 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 923s Get:254 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tweenr arm64 2.0.3-1 [404 kB] 923s Get:255 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-polyclip arm64 1.10-6-1 [110 kB] 923s Get:256 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-systemfonts arm64 1.0.5-1 [218 kB] 923s Get:257 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.0-1build1 [1417 kB] 923s Get:258 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ggforce arm64 0.4.2-1 [1778 kB] 923s Get:259 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 923s Get:260 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 923s Get:261 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ggthemes all 5.1.0-1 [434 kB] 923s Get:262 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 923s Get:263 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 923s Get:264 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xfun arm64 0.44+dfsg-1 [517 kB] 923s Get:265 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-highr all 0.10+dfsg-2 [38.5 kB] 923s Get:266 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 923s Get:267 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-promises arm64 1.3.0+dfsg-1 [286 kB] 923s Get:268 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 923s Get:269 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-intervals arm64 0.15.4-1 [755 kB] 923s Get:270 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 923s Get:271 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-knitr all 1.46+dfsg-1 [911 kB] 923s Get:272 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 923s Get:273 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lmtest arm64 0.9.40-1 [396 kB] 923s Get:274 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lwgeom arm64 0.2-13-3build2 [383 kB] 923s Get:275 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 924s Get:276 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 925s Get:277 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-misctools all 0.6-28-1 [99.9 kB] 925s Get:278 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sandwich all 3.1-0-1 [1484 kB] 925s Get:279 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-maxlik all 1.5-2-1 [1550 kB] 925s Get:280 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rnetcdf arm64 2.9-1-1build2 [228 kB] 925s Get:281 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 925s Get:282 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ncmeta all 0.3.6-1 [360 kB] 925s Get:283 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stars all 0.6-4-1 [4030 kB] 925s Get:284 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 925s Get:285 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB] 925s Get:286 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pcict arm64 0.5-4.4-1 [94.0 kB] 925s Get:287 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 925s Get:288 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 925s Get:289 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 925s Get:290 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rbibutils arm64 2.2.16-1 [748 kB] 925s Get:291 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rdpack all 2.6-1 [742 kB] 925s Get:292 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-plm all 2.6-4-1 [2161 kB] 925s Get:293 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 925s Get:294 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-randomforest arm64 4.7-1.1-1 [214 kB] 925s Get:295 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 925s Get:296 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-terra arm64 1.7-65-1build2 [3590 kB] 925s Get:297 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-raster arm64 3.6-26-1 [3100 kB] 926s Get:298 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 926s Get:299 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 926s Get:300 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 926s Get:301 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 926s Get:302 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 926s Get:303 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 926s Get:304 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB] 926s Get:305 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 926s Get:306 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 927s Get:307 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rpart arm64 4.1.23-1build1 [660 kB] 927s Get:308 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xts arm64 0.13.2-1 [770 kB] 927s Get:309 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spacetime all 1.3-1-1 [2804 kB] 927s Get:310 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.utils arm64 3.0-4-1 [360 kB] 927s Get:311 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 928s Get:312 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.geom arm64 3.2-9-1 [3938 kB] 928s Get:313 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.random arm64 3.2-3-1 [1157 kB] 928s Get:314 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 928s Get:315 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.sparse arm64 3.0-3-1 [214 kB] 928s Get:316 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.explore arm64 3.2-5-1 [3264 kB] 928s Get:317 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.model arm64 3.2-11-1 [3384 kB] 928s Get:318 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat.linnet arm64 3.1-5-1 [1468 kB] 928s Get:319 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-spatstat arm64 3.0-7-1 [3817 kB] 929s Get:320 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 929s Get:321 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 929s Get:322 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 930s Preconfiguring packages ... 931s Fetched 361 MB in 19s (19.1 MB/s) 931s Selecting previously unselected package gcc-13-base:arm64. 931s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78365 files and directories currently installed.) 931s Preparing to unpack .../000-gcc-13-base_13.2.0-23ubuntu4_arm64.deb ... 931s Unpacking gcc-13-base:arm64 (13.2.0-23ubuntu4) ... 931s Selecting previously unselected package libisl23:arm64. 931s Preparing to unpack .../001-libisl23_0.26-3build1_arm64.deb ... 931s Unpacking libisl23:arm64 (0.26-3build1) ... 931s Selecting previously unselected package libmpc3:arm64. 931s Preparing to unpack .../002-libmpc3_1.3.1-1build1_arm64.deb ... 931s Unpacking libmpc3:arm64 (1.3.1-1build1) ... 931s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 931s Preparing to unpack .../003-cpp-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 931s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 932s Selecting previously unselected package cpp-13. 932s Preparing to unpack .../004-cpp-13_13.2.0-23ubuntu4_arm64.deb ... 932s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 932s Selecting previously unselected package cpp-aarch64-linux-gnu. 932s Preparing to unpack .../005-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 932s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 932s Selecting previously unselected package cpp. 932s Preparing to unpack .../006-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 932s Unpacking cpp (4:13.2.0-7ubuntu1) ... 932s Selecting previously unselected package libcc1-0:arm64. 932s Preparing to unpack .../007-libcc1-0_14.1.0-1ubuntu1_arm64.deb ... 932s Unpacking libcc1-0:arm64 (14.1.0-1ubuntu1) ... 932s Selecting previously unselected package libgomp1:arm64. 932s Preparing to unpack .../008-libgomp1_14.1.0-1ubuntu1_arm64.deb ... 932s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ... 932s Selecting previously unselected package libitm1:arm64. 932s Preparing to unpack .../009-libitm1_14.1.0-1ubuntu1_arm64.deb ... 932s Unpacking libitm1:arm64 (14.1.0-1ubuntu1) ... 932s Selecting previously unselected package libatomic1:arm64. 932s Preparing to unpack .../010-libatomic1_14.1.0-1ubuntu1_arm64.deb ... 932s Unpacking libatomic1:arm64 (14.1.0-1ubuntu1) ... 932s Selecting previously unselected package libasan8:arm64. 932s Preparing to unpack .../011-libasan8_14.1.0-1ubuntu1_arm64.deb ... 932s Unpacking libasan8:arm64 (14.1.0-1ubuntu1) ... 932s Selecting previously unselected package liblsan0:arm64. 932s Preparing to unpack .../012-liblsan0_14.1.0-1ubuntu1_arm64.deb ... 932s Unpacking liblsan0:arm64 (14.1.0-1ubuntu1) ... 933s Selecting previously unselected package libtsan2:arm64. 933s Preparing to unpack .../013-libtsan2_14.1.0-1ubuntu1_arm64.deb ... 933s Unpacking libtsan2:arm64 (14.1.0-1ubuntu1) ... 933s Selecting previously unselected package libubsan1:arm64. 933s Preparing to unpack .../014-libubsan1_14.1.0-1ubuntu1_arm64.deb ... 933s Unpacking libubsan1:arm64 (14.1.0-1ubuntu1) ... 933s Selecting previously unselected package libhwasan0:arm64. 933s Preparing to unpack .../015-libhwasan0_14.1.0-1ubuntu1_arm64.deb ... 933s Unpacking libhwasan0:arm64 (14.1.0-1ubuntu1) ... 933s Selecting previously unselected package libgcc-13-dev:arm64. 933s Preparing to unpack .../016-libgcc-13-dev_13.2.0-23ubuntu4_arm64.deb ... 933s Unpacking libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ... 933s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 933s Preparing to unpack .../017-gcc-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 933s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 934s Selecting previously unselected package gcc-13. 934s Preparing to unpack .../018-gcc-13_13.2.0-23ubuntu4_arm64.deb ... 934s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 935s Selecting previously unselected package gcc-aarch64-linux-gnu. 935s Preparing to unpack .../019-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 935s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 935s Selecting previously unselected package gcc. 935s Preparing to unpack .../020-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 935s Unpacking gcc (4:13.2.0-7ubuntu1) ... 935s Selecting previously unselected package libstdc++-13-dev:arm64. 935s Preparing to unpack .../021-libstdc++-13-dev_13.2.0-23ubuntu4_arm64.deb ... 935s Unpacking libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ... 935s Selecting previously unselected package g++-13-aarch64-linux-gnu. 935s Preparing to unpack .../022-g++-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 935s Unpacking g++-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 936s Selecting previously unselected package g++-13. 936s Preparing to unpack .../023-g++-13_13.2.0-23ubuntu4_arm64.deb ... 936s Unpacking g++-13 (13.2.0-23ubuntu4) ... 936s Selecting previously unselected package g++-aarch64-linux-gnu. 936s Preparing to unpack .../024-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 936s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 936s Selecting previously unselected package g++. 936s Preparing to unpack .../025-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 936s Unpacking g++ (4:13.2.0-7ubuntu1) ... 936s Selecting previously unselected package build-essential. 936s Preparing to unpack .../026-build-essential_12.10ubuntu1_arm64.deb ... 936s Unpacking build-essential (12.10ubuntu1) ... 936s Selecting previously unselected package dctrl-tools. 936s Preparing to unpack .../027-dctrl-tools_2.24-3build3_arm64.deb ... 937s Unpacking dctrl-tools (2.24-3build3) ... 937s Selecting previously unselected package fontconfig. 937s Preparing to unpack .../028-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 937s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 937s Selecting previously unselected package fonts-font-awesome. 937s Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 937s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 937s Selecting previously unselected package fonts-glyphicons-halflings. 937s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 937s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 937s Selecting previously unselected package fonts-mathjax. 937s Preparing to unpack .../031-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 937s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 937s Selecting previously unselected package gdal-data. 937s Preparing to unpack .../032-gdal-data_3.8.5+dfsg-1_all.deb ... 937s Unpacking gdal-data (3.8.5+dfsg-1) ... 938s Selecting previously unselected package gdal-plugins:arm64. 938s Preparing to unpack .../033-gdal-plugins_3.8.5+dfsg-1_arm64.deb ... 938s Unpacking gdal-plugins:arm64 (3.8.5+dfsg-1) ... 938s Selecting previously unselected package libgfortran5:arm64. 938s Preparing to unpack .../034-libgfortran5_14.1.0-1ubuntu1_arm64.deb ... 938s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ... 938s Selecting previously unselected package libgfortran-13-dev:arm64. 938s Preparing to unpack .../035-libgfortran-13-dev_13.2.0-23ubuntu4_arm64.deb ... 938s Unpacking libgfortran-13-dev:arm64 (13.2.0-23ubuntu4) ... 938s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 938s Preparing to unpack .../036-gfortran-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 938s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 938s Selecting previously unselected package gfortran-13. 938s Preparing to unpack .../037-gfortran-13_13.2.0-23ubuntu4_arm64.deb ... 938s Unpacking gfortran-13 (13.2.0-23ubuntu4) ... 939s Selecting previously unselected package gfortran-aarch64-linux-gnu. 939s Preparing to unpack .../038-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 939s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 939s Selecting previously unselected package gfortran. 939s Preparing to unpack .../039-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 939s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 939s Selecting previously unselected package icu-devtools. 939s Preparing to unpack .../040-icu-devtools_74.2-1ubuntu3_arm64.deb ... 939s Unpacking icu-devtools (74.2-1ubuntu3) ... 939s Selecting previously unselected package javascript-common. 939s Preparing to unpack .../041-javascript-common_11+nmu1_all.deb ... 939s Unpacking javascript-common (11+nmu1) ... 939s Selecting previously unselected package libaec0:arm64. 939s Preparing to unpack .../042-libaec0_1.1.3-1_arm64.deb ... 939s Unpacking libaec0:arm64 (1.1.3-1) ... 939s Selecting previously unselected package libblas3:arm64. 939s Preparing to unpack .../043-libblas3_3.12.0-3build1_arm64.deb ... 939s Unpacking libblas3:arm64 (3.12.0-3build1) ... 939s Selecting previously unselected package liblapack3:arm64. 939s Preparing to unpack .../044-liblapack3_3.12.0-3build1_arm64.deb ... 939s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 939s Selecting previously unselected package libarpack2t64:arm64. 939s Preparing to unpack .../045-libarpack2t64_3.9.1-1.1build2_arm64.deb ... 939s Unpacking libarpack2t64:arm64 (3.9.1-1.1build2) ... 939s Selecting previously unselected package libsuperlu6:arm64. 939s Preparing to unpack .../046-libsuperlu6_6.0.1+dfsg1-1build1_arm64.deb ... 939s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1build1) ... 940s Selecting previously unselected package libarmadillo12. 940s Preparing to unpack .../047-libarmadillo12_1%3a12.8.2+dfsg-1_arm64.deb ... 940s Unpacking libarmadillo12 (1:12.8.2+dfsg-1) ... 940s Selecting previously unselected package libblas-dev:arm64. 940s Preparing to unpack .../048-libblas-dev_3.12.0-3build1_arm64.deb ... 940s Unpacking libblas-dev:arm64 (3.12.0-3build1) ... 940s Selecting previously unselected package libsnappy1v5:arm64. 940s Preparing to unpack .../049-libsnappy1v5_1.2.1-1_arm64.deb ... 940s Unpacking libsnappy1v5:arm64 (1.2.1-1) ... 940s Selecting previously unselected package libblosc1:arm64. 940s Preparing to unpack .../050-libblosc1_1.21.5+ds-1build1_arm64.deb ... 940s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ... 940s Selecting previously unselected package libbz2-dev:arm64. 940s Preparing to unpack .../051-libbz2-dev_1.0.8-5.1_arm64.deb ... 940s Unpacking libbz2-dev:arm64 (1.0.8-5.1) ... 940s Selecting previously unselected package libpixman-1-0:arm64. 940s Preparing to unpack .../052-libpixman-1-0_0.42.2-1build1_arm64.deb ... 940s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 940s Selecting previously unselected package libxcb-render0:arm64. 940s Preparing to unpack .../053-libxcb-render0_1.17.0-2_arm64.deb ... 940s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 940s Selecting previously unselected package libxcb-shm0:arm64. 940s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_arm64.deb ... 940s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 940s Selecting previously unselected package libxrender1:arm64. 940s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 940s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 940s Selecting previously unselected package libcairo2:arm64. 940s Preparing to unpack .../056-libcairo2_1.18.0-3build1_arm64.deb ... 940s Unpacking libcairo2:arm64 (1.18.0-3build1) ... 940s Selecting previously unselected package libcfitsio10t64:arm64. 940s Preparing to unpack .../057-libcfitsio10t64_4.3.1-1.1build2_arm64.deb ... 940s Unpacking libcfitsio10t64:arm64 (4.3.1-1.1build2) ... 941s Selecting previously unselected package libdatrie1:arm64. 941s Preparing to unpack .../058-libdatrie1_0.2.13-3build1_arm64.deb ... 941s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 941s Selecting previously unselected package libdeflate-dev:arm64. 941s Preparing to unpack .../059-libdeflate-dev_1.20-1_arm64.deb ... 941s Unpacking libdeflate-dev:arm64 (1.20-1) ... 941s Selecting previously unselected package libfyba0t64:arm64. 941s Preparing to unpack .../060-libfyba0t64_4.1.1-11build1_arm64.deb ... 941s Unpacking libfyba0t64:arm64 (4.1.1-11build1) ... 941s Selecting previously unselected package libminizip1t64:arm64. 941s Preparing to unpack .../061-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ... 941s Unpacking libminizip1t64:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 941s Selecting previously unselected package libfreexl1:arm64. 941s Preparing to unpack .../062-libfreexl1_2.0.0-1build2_arm64.deb ... 941s Unpacking libfreexl1:arm64 (2.0.0-1build2) ... 941s Selecting previously unselected package libgeos3.12.1t64:arm64. 941s Preparing to unpack .../063-libgeos3.12.1t64_3.12.1-3build1_arm64.deb ... 941s Unpacking libgeos3.12.1t64:arm64 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libsz2:arm64. 942s Preparing to unpack .../069-libsz2_1.1.3-1_arm64.deb ... 942s Unpacking libsz2:arm64 (1.1.3-1) ... 942s Selecting previously unselected package libhdf4-0-alt:arm64. 942s Preparing to unpack .../070-libhdf4-0-alt_4.3.0-1_arm64.deb ... 942s Unpacking libhdf4-0-alt:arm64 (4.3.0-1) ... 942s Selecting previously unselected package libhdf5-103-1t64:arm64. 942s Preparing to unpack .../071-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 942s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 942s Selecting previously unselected package liburiparser1:arm64. 942s Preparing to unpack .../072-liburiparser1_0.9.7+dfsg-2build1_arm64.deb ... 942s Unpacking liburiparser1:arm64 (0.9.7+dfsg-2build1) ... 943s Selecting previously unselected package libkmlbase1t64:arm64. 943s Preparing to unpack .../073-libkmlbase1t64_1.3.0-12build1_arm64.deb ... 943s Unpacking libkmlbase1t64:arm64 (1.3.0-12build1) ... 943s Selecting previously unselected package libkmldom1t64:arm64. 943s Preparing to unpack .../074-libkmldom1t64_1.3.0-12build1_arm64.deb ... 943s Unpacking libkmldom1t64:arm64 (1.3.0-12build1) ... 943s Selecting previously unselected package libkmlengine1t64:arm64. 943s Preparing to unpack .../075-libkmlengine1t64_1.3.0-12build1_arm64.deb ... 943s Unpacking libkmlengine1t64:arm64 (1.3.0-12build1) ... 943s Selecting previously unselected package mysql-common. 943s Preparing to unpack .../076-mysql-common_5.8+1.1.0build1_all.deb ... 943s Unpacking mysql-common (5.8+1.1.0build1) ... 943s Selecting previously unselected package libmysqlclient21:arm64. 943s Preparing to unpack .../077-libmysqlclient21_8.0.37-1_arm64.deb ... 943s Unpacking libmysqlclient21:arm64 (8.0.37-1) ... 943s Selecting previously unselected package libhdf5-hl-100t64:arm64. 943s Preparing to unpack .../078-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 943s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 943s Selecting previously unselected package libnetcdf19t64:arm64. 943s Preparing to unpack .../079-libnetcdf19t64_1%3a4.9.2-5ubuntu4_arm64.deb ... 943s Unpacking libnetcdf19t64:arm64 (1:4.9.2-5ubuntu4) ... 943s Selecting previously unselected package libltdl7:arm64. 943s Preparing to unpack .../080-libltdl7_2.4.7-7build1_arm64.deb ... 943s Unpacking libltdl7:arm64 (2.4.7-7build1) ... 943s Selecting previously unselected package libodbc2:arm64. 943s Preparing to unpack .../081-libodbc2_2.3.12-1build2_arm64.deb ... 943s Unpacking libodbc2:arm64 (2.3.12-1build2) ... 943s Selecting previously unselected package unixodbc-common. 943s Preparing to unpack .../082-unixodbc-common_2.3.12-1build2_all.deb ... 943s Unpacking unixodbc-common (2.3.12-1build2) ... 944s Selecting previously unselected package libodbcinst2:arm64. 944s Preparing to unpack .../083-libodbcinst2_2.3.12-1build2_arm64.deb ... 944s Unpacking libodbcinst2:arm64 (2.3.12-1build2) ... 944s Selecting previously unselected package libogdi4.1:arm64. 944s Preparing to unpack .../084-libogdi4.1_4.1.1+ds-4_arm64.deb ... 944s Unpacking libogdi4.1:arm64 (4.1.1+ds-4) ... 944s Selecting previously unselected package libopenjp2-7:arm64. 944s Preparing to unpack .../085-libopenjp2-7_2.5.0-2build3_arm64.deb ... 944s Unpacking libopenjp2-7:arm64 (2.5.0-2build3) ... 944s Selecting previously unselected package liblcms2-2:arm64. 944s Preparing to unpack .../086-liblcms2-2_2.14-2build1_arm64.deb ... 944s Unpacking liblcms2-2:arm64 (2.14-2build1) ... 944s Selecting previously unselected package libpoppler134:arm64. 944s Preparing to unpack .../087-libpoppler134_24.02.0-1ubuntu9_arm64.deb ... 944s Unpacking libpoppler134:arm64 (24.02.0-1ubuntu9) ... 944s Selecting previously unselected package libpq5:arm64. 944s Preparing to unpack .../088-libpq5_16.2-1ubuntu4_arm64.deb ... 944s Unpacking libpq5:arm64 (16.2-1ubuntu4) ... 944s Selecting previously unselected package libqhull-r8.0:arm64. 944s Preparing to unpack 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previously unselected package libjs-prettify. 948s Preparing to unpack .../115-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 948s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 949s Selecting previously unselected package liblapack-dev:arm64. 949s Preparing to unpack .../116-liblapack-dev_3.12.0-3build1_arm64.deb ... 949s Unpacking liblapack-dev:arm64 (3.12.0-3build1) ... 949s Selecting previously unselected package liblua5.4-0:arm64. 949s Preparing to unpack .../117-liblua5.4-0_5.4.6-3build2_arm64.deb ... 949s Unpacking liblua5.4-0:arm64 (5.4.6-3build2) ... 949s Selecting previously unselected package libncurses-dev:arm64. 949s Preparing to unpack .../118-libncurses-dev_6.4+20240113-1ubuntu2_arm64.deb ... 949s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu2) ... 949s Selecting previously unselected package libthai-data. 949s Preparing to unpack .../119-libthai-data_0.1.29-2build1_all.deb ... 949s Unpacking libthai-data (0.1.29-2build1) ... 949s Selecting previously unselected package libthai0:arm64. 949s Preparing to unpack .../120-libthai0_0.1.29-2build1_arm64.deb ... 949s Unpacking libthai0:arm64 (0.1.29-2build1) ... 949s Selecting previously unselected package libpango-1.0-0:arm64. 950s Preparing to unpack .../121-libpango-1.0-0_1.52.2+ds-1_arm64.deb ... 950s Unpacking libpango-1.0-0:arm64 (1.52.2+ds-1) ... 950s Selecting previously unselected package libpangoft2-1.0-0:arm64. 950s Preparing to unpack .../122-libpangoft2-1.0-0_1.52.2+ds-1_arm64.deb ... 950s Unpacking libpangoft2-1.0-0:arm64 (1.52.2+ds-1) ... 950s Selecting previously unselected package libpangocairo-1.0-0:arm64. 950s Preparing to unpack .../123-libpangocairo-1.0-0_1.52.2+ds-1_arm64.deb ... 950s Unpacking libpangocairo-1.0-0:arm64 (1.52.2+ds-1) ... 950s Selecting previously unselected package libpaper1:arm64. 950s Preparing to unpack .../124-libpaper1_1.1.29build1_arm64.deb ... 950s Unpacking libpaper1:arm64 (1.1.29build1) ... 950s Selecting previously unselected package 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libudunits2-0 (2.2.28-7build1) ... 952s Selecting previously unselected package libxt6t64:arm64. 952s Preparing to unpack .../141-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 952s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 952s Selecting previously unselected package zip. 952s Preparing to unpack .../142-zip_3.0-13build1_arm64.deb ... 952s Unpacking zip (3.0-13build1) ... 952s Selecting previously unselected package unzip. 952s Preparing to unpack .../143-unzip_6.0-28ubuntu4_arm64.deb ... 952s Unpacking unzip (6.0-28ubuntu4) ... 952s Selecting previously unselected package xdg-utils. 952s Preparing to unpack .../144-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 952s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 952s Selecting previously unselected package r-base-core. 952s Preparing to unpack .../145-r-base-core_4.4.0-2_arm64.deb ... 952s Unpacking r-base-core (4.4.0-2) ... 953s Selecting previously unselected package r-cran-littler. 953s Preparing to unpack .../146-r-cran-littler_0.3.20-1_arm64.deb ... 953s Unpacking r-cran-littler (0.3.20-1) ... 953s Selecting previously unselected package littler. 953s Preparing to unpack .../147-littler_0.3.20-1_all.deb ... 953s Unpacking littler (0.3.20-1) ... 953s Selecting previously unselected package node-bootstrap-sass. 954s Preparing to unpack .../148-node-bootstrap-sass_3.4.3-2_all.deb ... 954s Unpacking node-bootstrap-sass (3.4.3-2) ... 954s Selecting previously unselected package node-html5shiv. 954s Preparing to unpack .../149-node-html5shiv_3.7.3+dfsg-5_all.deb ... 954s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 954s Selecting previously unselected package node-normalize.css. 954s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 954s Unpacking node-normalize.css (8.0.1-5) ... 954s Selecting previously unselected package pandoc-data. 954s Preparing to unpack .../151-pandoc-data_3.1.3-2build2_all.deb ... 954s Unpacking pandoc-data (3.1.3-2build2) ... 954s Selecting previously unselected package pandoc. 954s Preparing to unpack .../152-pandoc_3.1.3+ds-3build1_arm64.deb ... 954s Unpacking pandoc (3.1.3+ds-3build1) ... 957s Selecting previously unselected package liblzma-dev:arm64. 957s Preparing to unpack .../153-liblzma-dev_5.6.1+really5.4.5-1_arm64.deb ... 957s Unpacking liblzma-dev:arm64 (5.6.1+really5.4.5-1) ... 957s Selecting previously unselected package pkgconf-bin. 957s Preparing to unpack .../154-pkgconf-bin_1.8.1-2build1_arm64.deb ... 957s Unpacking pkgconf-bin (1.8.1-2build1) ... 957s Selecting previously unselected package pkgconf:arm64. 957s Preparing to unpack .../155-pkgconf_1.8.1-2build1_arm64.deb ... 957s Unpacking pkgconf:arm64 (1.8.1-2build1) ... 957s Selecting previously unselected package libtirpc-dev:arm64. 957s Preparing to unpack .../156-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 957s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 957s Selecting previously unselected package r-base-dev. 957s Preparing to unpack .../157-r-base-dev_4.4.0-2_all.deb ... 957s Unpacking r-base-dev (4.4.0-2) ... 957s Selecting previously unselected package pkg-r-autopkgtest. 957s Preparing to unpack .../158-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 957s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 957s Selecting previously unselected package r-cran-abind. 957s Preparing to unpack .../159-r-cran-abind_1.4-5-2_all.deb ... 957s Unpacking r-cran-abind (1.4-5-2) ... 958s Selecting previously unselected package r-cran-cli. 958s Preparing to unpack .../160-r-cran-cli_3.6.2-1_arm64.deb ... 958s Unpacking r-cran-cli (3.6.2-1) ... 958s Selecting previously unselected package r-cran-generics. 958s Preparing to unpack .../161-r-cran-generics_0.1.3-1_all.deb ... 958s Unpacking r-cran-generics (0.1.3-1) ... 958s Selecting previously unselected package r-cran-glue. 958s Preparing to unpack .../162-r-cran-glue_1.7.0-1_arm64.deb ... 958s Unpacking r-cran-glue (1.7.0-1) ... 958s Selecting previously unselected package r-cran-rlang. 958s Preparing to unpack .../163-r-cran-rlang_1.1.3-1_arm64.deb ... 958s Unpacking r-cran-rlang (1.1.3-1) ... 958s Selecting previously unselected package r-cran-lifecycle. 958s Preparing to unpack .../164-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 958s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 958s Selecting previously unselected package r-cran-magrittr. 958s Preparing to unpack .../165-r-cran-magrittr_2.0.3-1_arm64.deb ... 958s Unpacking r-cran-magrittr (2.0.3-1) ... 958s Selecting previously unselected package r-cran-fansi. 958s Preparing to unpack .../166-r-cran-fansi_1.0.5-1_arm64.deb ... 958s Unpacking r-cran-fansi (1.0.5-1) ... 959s Selecting previously unselected package r-cran-utf8. 959s Preparing to unpack .../167-r-cran-utf8_1.2.4-1_arm64.deb ... 959s Unpacking r-cran-utf8 (1.2.4-1) ... 959s Selecting previously unselected package r-cran-vctrs. 959s Preparing to unpack .../168-r-cran-vctrs_0.6.5-1_arm64.deb ... 959s Unpacking r-cran-vctrs (0.6.5-1) ... 959s Selecting previously unselected package r-cran-pillar. 959s Preparing to unpack .../169-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 959s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 959s Selecting previously unselected package r-cran-r6. 959s Preparing to unpack .../170-r-cran-r6_2.5.1-1_all.deb ... 959s Unpacking r-cran-r6 (2.5.1-1) ... 959s Selecting previously unselected package r-cran-pkgconfig. 959s Preparing to unpack .../171-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 959s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 959s Selecting previously unselected package r-cran-tibble. 959s Preparing to unpack .../172-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 959s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 959s Selecting previously unselected package r-cran-withr. 959s Preparing to unpack .../173-r-cran-withr_2.5.0-1_all.deb ... 959s Unpacking r-cran-withr (2.5.0-1) ... 959s Selecting previously unselected package r-cran-tidyselect. 960s Preparing to unpack .../174-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 960s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 960s Selecting previously unselected package r-cran-dplyr. 960s Preparing to unpack .../175-r-cran-dplyr_1.1.4-1_arm64.deb ... 960s Unpacking r-cran-dplyr (1.1.4-1) ... 960s Selecting previously unselected package r-cran-purrr. 960s Preparing to unpack .../176-r-cran-purrr_1.0.2-1_arm64.deb ... 960s Unpacking r-cran-purrr (1.0.2-1) ... 960s Selecting previously unselected package r-cran-mass. 960s Preparing to unpack .../177-r-cran-mass_7.3-60.2-1_arm64.deb ... 960s Unpacking r-cran-mass (7.3-60.2-1) ... 960s Selecting previously unselected package r-cran-class. 960s Preparing to unpack .../178-r-cran-class_7.3-22-2build1_arm64.deb ... 960s Unpacking r-cran-class (7.3-22-2build1) ... 960s Selecting previously unselected package r-cran-proxy. 960s Preparing to unpack .../179-r-cran-proxy_0.4-27-1_arm64.deb ... 960s Unpacking r-cran-proxy (0.4-27-1) ... 960s Selecting previously unselected package r-cran-e1071. 961s Preparing to unpack .../180-r-cran-e1071_1.7-14-1_arm64.deb ... 961s Unpacking r-cran-e1071 (1.7-14-1) ... 961s Selecting previously unselected package r-cran-kernsmooth. 961s Preparing to unpack .../181-r-cran-kernsmooth_2.23-24-1_arm64.deb ... 961s Unpacking r-cran-kernsmooth (2.23-24-1) ... 961s Selecting previously unselected package r-cran-classint. 961s Preparing to unpack .../182-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 961s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 961s Selecting previously unselected package r-cran-dbi. 961s Preparing to unpack .../183-r-cran-dbi_1.2.2-1_all.deb ... 961s Unpacking r-cran-dbi (1.2.2-1) ... 961s Selecting previously unselected package r-cran-pkgkitten. 961s Preparing to unpack .../184-r-cran-pkgkitten_0.2.3-1_all.deb ... 961s Unpacking r-cran-pkgkitten (0.2.3-1) ... 961s Selecting previously unselected package r-cran-rcpp. 961s Preparing to unpack .../185-r-cran-rcpp_1.0.12-1_arm64.deb ... 961s Unpacking r-cran-rcpp (1.0.12-1) ... 962s Selecting previously unselected package r-cran-wk. 962s Preparing to unpack .../186-r-cran-wk_0.9.1-1_arm64.deb ... 962s Unpacking r-cran-wk (0.9.1-1) ... 962s Selecting previously unselected package r-cran-s2. 962s Preparing to unpack .../187-r-cran-s2_1.1.6-1build2_arm64.deb ... 962s Unpacking r-cran-s2 (1.1.6-1build2) ... 962s Selecting previously unselected package r-cran-units. 962s Preparing to unpack .../188-r-cran-units_0.8-5+dfsg-1_arm64.deb ... 962s Unpacking r-cran-units (0.8-5+dfsg-1) ... 962s Selecting previously unselected package r-cran-sf. 962s Preparing to unpack .../189-r-cran-sf_1.0-16+dfsg-1_arm64.deb ... 962s Unpacking r-cran-sf (1.0-16+dfsg-1) ... 962s Selecting previously unselected package r-cran-areal. 962s Preparing to unpack .../190-r-cran-areal_0.1.8+dfsg-2_all.deb ... 962s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 962s Selecting previously unselected package r-cran-sys. 962s Preparing to unpack .../191-r-cran-sys_3.4.2-1_arm64.deb ... 962s Unpacking r-cran-sys (3.4.2-1) ... 963s Selecting previously unselected package r-cran-askpass. 963s Preparing to unpack .../192-r-cran-askpass_1.2.0-1_arm64.deb ... 963s Unpacking r-cran-askpass (1.2.0-1) ... 963s Selecting previously unselected package r-cran-base64enc. 963s Preparing to unpack .../193-r-cran-base64enc_0.1-3-3_arm64.deb ... 963s Unpacking r-cran-base64enc (0.1-3-3) ... 963s Selecting previously unselected package r-cran-bdsmatrix. 963s Preparing to unpack .../194-r-cran-bdsmatrix_1.3-7-1_arm64.deb ... 963s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 963s Selecting previously unselected package r-cran-brio. 963s Preparing to unpack .../195-r-cran-brio_1.1.5-1_arm64.deb ... 963s Unpacking r-cran-brio (1.1.5-1) ... 963s Selecting previously unselected package r-cran-fastmap. 963s Preparing to unpack .../196-r-cran-fastmap_1.1.1-1_arm64.deb ... 963s Unpacking r-cran-fastmap (1.1.1-1) ... 963s Selecting previously unselected package r-cran-cachem. 963s Preparing to unpack .../197-r-cran-cachem_1.0.8-1_arm64.deb ... 963s Unpacking r-cran-cachem (1.0.8-1) ... 963s Selecting previously unselected package r-cran-digest. 963s Preparing to unpack .../198-r-cran-digest_0.6.35-1_arm64.deb ... 963s Unpacking r-cran-digest (0.6.35-1) ... 963s Selecting previously unselected package r-cran-htmltools. 963s Preparing to unpack .../199-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 963s Unpacking r-cran-htmltools (0.5.8.1-1) ... 963s Selecting previously unselected package r-cran-jquerylib. 963s Preparing to unpack .../200-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 963s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 964s Selecting previously unselected package r-cran-jsonlite. 964s Preparing to unpack .../201-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 964s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 964s Selecting previously unselected package r-cran-memoise. 964s Preparing to unpack .../202-r-cran-memoise_2.0.1-1_all.deb ... 964s Unpacking r-cran-memoise (2.0.1-1) ... 964s Selecting previously unselected package r-cran-mime. 964s Preparing to unpack .../203-r-cran-mime_0.12-2_arm64.deb ... 964s Unpacking r-cran-mime (0.12-2) ... 964s Selecting previously unselected package r-cran-fs. 964s Preparing to unpack .../204-r-cran-fs_1.6.3+dfsg-1build2_arm64.deb ... 964s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ... 964s Selecting previously unselected package r-cran-rappdirs. 964s Preparing to unpack .../205-r-cran-rappdirs_0.3.3-1_arm64.deb ... 964s Unpacking r-cran-rappdirs (0.3.3-1) ... 964s Selecting previously unselected package r-cran-sass. 964s Preparing to unpack .../206-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 964s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 964s Selecting previously unselected package r-cran-bslib. 964s Preparing to unpack .../207-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 964s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 965s Selecting previously unselected package r-cran-cairo. 965s Preparing to unpack .../208-r-cran-cairo_1.6-2-1_arm64.deb ... 965s Unpacking r-cran-cairo (1.6-2-1) ... 965s Selecting previously unselected package r-cran-ps. 965s Preparing to unpack .../209-r-cran-ps_1.7.6-1_arm64.deb ... 965s Unpacking r-cran-ps (1.7.6-1) ... 965s Selecting previously unselected package r-cran-processx. 965s Preparing to unpack .../210-r-cran-processx_3.8.3-1_arm64.deb ... 965s Unpacking r-cran-processx (3.8.3-1) ... 965s Selecting previously unselected package r-cran-callr. 965s Preparing to unpack .../211-r-cran-callr_3.7.6-1_all.deb ... 965s Unpacking r-cran-callr (3.7.6-1) ... 965s Selecting previously unselected package r-cran-cluster. 965s Preparing to unpack .../212-r-cran-cluster_2.1.6-1build1_arm64.deb ... 965s Unpacking r-cran-cluster (2.1.6-1build1) ... 965s Selecting previously unselected package r-cran-clue. 965s Preparing to unpack .../213-r-cran-clue_0.3-65-1_arm64.deb ... 965s Unpacking r-cran-clue (0.3-65-1) ... 966s Selecting previously unselected package r-cran-codetools. 966s Preparing to unpack .../214-r-cran-codetools_0.2-20-1_all.deb ... 966s Unpacking r-cran-codetools (0.2-20-1) ... 966s Selecting previously unselected package r-cran-collapse. 966s Preparing to unpack .../215-r-cran-collapse_2.0.13-1_arm64.deb ... 966s Unpacking r-cran-collapse (2.0.13-1) ... 966s Selecting previously unselected package r-cran-colorspace. 966s Preparing to unpack .../216-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 966s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 966s Selecting previously unselected package r-cran-commonmark. 966s Preparing to unpack .../217-r-cran-commonmark_1.9.1-1_arm64.deb ... 966s Unpacking r-cran-commonmark (1.9.1-1) ... 966s Selecting previously unselected package r-cran-lazyeval. 966s Preparing to unpack .../218-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 966s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 966s Selecting previously unselected package r-cran-rex. 966s Preparing to unpack .../219-r-cran-rex_1.2.1-1_all.deb ... 966s Unpacking r-cran-rex (1.2.1-1) ... 966s Selecting previously unselected package r-cran-curl. 966s Preparing to unpack .../220-r-cran-curl_5.2.0+dfsg-1build2_arm64.deb ... 966s Unpacking r-cran-curl (5.2.0+dfsg-1build2) ... 967s Selecting previously unselected package r-cran-openssl. 967s Preparing to unpack .../221-r-cran-openssl_2.1.1+dfsg-2build2_arm64.deb ... 967s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ... 967s Selecting previously unselected package r-cran-httr. 967s Preparing to unpack .../222-r-cran-httr_1.4.7+dfsg-1_all.deb ... 967s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 967s Selecting previously unselected package r-cran-crayon. 967s Preparing to unpack .../223-r-cran-crayon_1.5.2-1_all.deb ... 967s Unpacking r-cran-crayon (1.5.2-1) ... 967s Selecting previously unselected package r-cran-yaml. 967s Preparing to unpack .../224-r-cran-yaml_2.3.8-2_arm64.deb ... 967s Unpacking r-cran-yaml (2.3.8-2) ... 967s Selecting previously unselected package r-cran-covr. 967s Preparing to unpack .../225-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 967s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 967s Selecting previously unselected package r-cran-cpp11. 967s Preparing to unpack .../226-r-cran-cpp11_0.4.7-1_all.deb ... 967s Unpacking r-cran-cpp11 (0.4.7-1) ... 967s Selecting previously unselected package r-cran-deldir. 967s Preparing to unpack .../227-r-cran-deldir_2.0-4-1build1_arm64.deb ... 967s Unpacking r-cran-deldir (2.0-4-1build1) ... 968s Selecting previously unselected package r-cran-desc. 968s Preparing to unpack .../228-r-cran-desc_1.4.3-1_all.deb ... 968s Unpacking r-cran-desc (1.4.3-1) ... 968s Selecting previously unselected package r-cran-diffobj. 968s Preparing to unpack .../229-r-cran-diffobj_0.3.5-1_arm64.deb ... 968s Unpacking r-cran-diffobj (0.3.5-1) ... 968s Selecting previously unselected package r-cran-evaluate. 968s Preparing to unpack .../230-r-cran-evaluate_0.23-1_all.deb ... 968s Unpacking r-cran-evaluate (0.23-1) ... 968s Selecting previously unselected package r-cran-farver. 968s Preparing to unpack .../231-r-cran-farver_2.1.1-2_arm64.deb ... 968s Unpacking r-cran-farver (2.1.1-2) ... 968s Selecting previously unselected package r-cran-fnn. 968s Preparing to unpack .../232-r-cran-fnn_1.1.4-1_arm64.deb ... 968s Unpacking r-cran-fnn (1.1.4-1) ... 968s Selecting previously unselected package r-cran-fontawesome. 968s Preparing to unpack .../233-r-cran-fontawesome_0.5.2-1_all.deb ... 968s Unpacking r-cran-fontawesome (0.5.2-1) ... 969s Selecting previously unselected package r-cran-formula. 969s Preparing to unpack .../234-r-cran-formula_1.2-5-1_all.deb ... 969s Unpacking r-cran-formula (1.2-5-1) ... 969s Selecting previously unselected package r-cran-globals. 969s Preparing to unpack .../235-r-cran-globals_0.16.3-1_all.deb ... 969s Unpacking r-cran-globals (0.16.3-1) ... 969s Selecting previously unselected package r-cran-listenv. 969s Preparing to unpack .../236-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 969s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 969s Selecting previously unselected package r-cran-parallelly. 969s Preparing to unpack .../237-r-cran-parallelly_1.37.1-1build1_arm64.deb ... 969s Unpacking r-cran-parallelly (1.37.1-1build1) ... 969s Selecting previously unselected package r-cran-future. 969s Preparing to unpack .../238-r-cran-future_1.33.1+dfsg-1_all.deb ... 969s Unpacking r-cran-future (1.33.1+dfsg-1) ... 969s Selecting previously unselected package r-cran-future.apply. 969s Preparing to unpack .../239-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 969s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 969s Selecting previously unselected package r-cran-gtable. 969s Preparing to unpack .../240-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 969s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 969s Selecting previously unselected package r-cran-isoband. 969s Preparing to unpack .../241-r-cran-isoband_0.2.7-1_arm64.deb ... 969s Unpacking r-cran-isoband (0.2.7-1) ... 969s Selecting previously unselected package r-cran-lattice. 970s Preparing to unpack .../242-r-cran-lattice_0.22-6-1_arm64.deb ... 970s Unpacking r-cran-lattice (0.22-6-1) ... 970s Selecting previously unselected package r-cran-nlme. 970s Preparing to unpack .../243-r-cran-nlme_3.1.164-1build1_arm64.deb ... 970s Unpacking r-cran-nlme (3.1.164-1build1) ... 970s Selecting previously unselected package r-cran-matrix. 970s Preparing to unpack .../244-r-cran-matrix_1.6-5-1_arm64.deb ... 970s Unpacking r-cran-matrix (1.6-5-1) ... 970s Selecting previously unselected package r-cran-mgcv. 970s Preparing to unpack .../245-r-cran-mgcv_1.9-1-1_arm64.deb ... 970s Unpacking r-cran-mgcv (1.9-1-1) ... 970s Selecting previously unselected package r-cran-labeling. 970s Preparing to unpack .../246-r-cran-labeling_0.4.3-1_all.deb ... 970s Unpacking r-cran-labeling (0.4.3-1) ... 970s Selecting previously unselected package r-cran-munsell. 970s Preparing to unpack .../247-r-cran-munsell_0.5.0-2build1_all.deb ... 970s Unpacking r-cran-munsell (0.5.0-2build1) ... 971s Selecting previously unselected package r-cran-rcolorbrewer. 971s Preparing to unpack .../248-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 971s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 971s Selecting previously unselected package r-cran-viridislite. 971s Preparing to unpack .../249-r-cran-viridislite_0.4.2-2_all.deb ... 971s Unpacking r-cran-viridislite (0.4.2-2) ... 971s Selecting previously unselected package r-cran-scales. 971s Preparing to unpack .../250-r-cran-scales_1.3.0-1_all.deb ... 971s Unpacking r-cran-scales (1.3.0-1) ... 971s Selecting previously unselected package r-cran-ggplot2. 971s Preparing to unpack .../251-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 971s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 972s Selecting previously unselected package r-cran-tweenr. 972s Preparing to unpack .../252-r-cran-tweenr_2.0.3-1_arm64.deb ... 972s Unpacking r-cran-tweenr (2.0.3-1) ... 972s Selecting previously unselected package r-cran-polyclip. 972s Preparing to unpack .../253-r-cran-polyclip_1.10-6-1_arm64.deb ... 972s Unpacking r-cran-polyclip (1.10-6-1) ... 972s Selecting previously unselected package r-cran-systemfonts. 972s Preparing to unpack .../254-r-cran-systemfonts_1.0.5-1_arm64.deb ... 972s Unpacking r-cran-systemfonts (1.0.5-1) ... 972s Selecting previously unselected package r-cran-rcppeigen. 972s Preparing to unpack .../255-r-cran-rcppeigen_0.3.4.0.0-1build1_arm64.deb ... 972s Unpacking r-cran-rcppeigen (0.3.4.0.0-1build1) ... 973s Selecting previously unselected package r-cran-ggforce. 973s Preparing to unpack .../256-r-cran-ggforce_0.4.2-1_arm64.deb ... 973s Unpacking r-cran-ggforce (0.4.2-1) ... 973s Selecting previously unselected package r-cran-stringi. 973s Preparing to unpack .../257-r-cran-stringi_1.8.3-1_arm64.deb ... 973s Unpacking r-cran-stringi (1.8.3-1) ... 973s Selecting previously unselected package r-cran-stringr. 973s Preparing to unpack .../258-r-cran-stringr_1.5.1-1_all.deb ... 973s Unpacking r-cran-stringr (1.5.1-1) ... 973s Selecting previously unselected package r-cran-ggthemes. 973s Preparing to unpack .../259-r-cran-ggthemes_5.1.0-1_all.deb ... 973s Unpacking r-cran-ggthemes (5.1.0-1) ... 973s Selecting previously unselected package r-cran-goftest. 973s Preparing to unpack .../260-r-cran-goftest_1.2-3-1_arm64.deb ... 973s Unpacking r-cran-goftest (1.2-3-1) ... 974s Selecting previously unselected package r-cran-gridextra. 974s Preparing to unpack .../261-r-cran-gridextra_2.3-3build1_all.deb ... 974s Unpacking r-cran-gridextra (2.3-3build1) ... 974s Selecting previously unselected package r-cran-xfun. 974s Preparing to unpack .../262-r-cran-xfun_0.44+dfsg-1_arm64.deb ... 974s Unpacking r-cran-xfun (0.44+dfsg-1) ... 974s Selecting previously unselected package r-cran-highr. 974s Preparing to unpack .../263-r-cran-highr_0.10+dfsg-2_all.deb ... 974s Unpacking r-cran-highr (0.10+dfsg-2) ... 974s Selecting previously unselected package r-cran-later. 974s Preparing to unpack .../264-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 974s Unpacking r-cran-later (1.3.2+dfsg-1) ... 974s Selecting previously unselected package r-cran-promises. 974s Preparing to unpack .../265-r-cran-promises_1.3.0+dfsg-1_arm64.deb ... 974s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 974s Selecting previously unselected package r-cran-httpuv. 974s Preparing to unpack .../266-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 974s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 974s Selecting previously unselected package r-cran-intervals. 974s Preparing to unpack .../267-r-cran-intervals_0.15.4-1_arm64.deb ... 974s Unpacking r-cran-intervals (0.15.4-1) ... 975s Selecting previously unselected package libjs-mathjax. 975s Preparing to unpack .../268-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 975s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 978s Selecting previously unselected package r-cran-knitr. 978s Preparing to unpack .../269-r-cran-knitr_1.46+dfsg-1_all.deb ... 978s Unpacking r-cran-knitr (1.46+dfsg-1) ... 978s Selecting previously unselected package r-cran-zoo. 978s Preparing to unpack .../270-r-cran-zoo_1.8-12-2_arm64.deb ... 978s Unpacking r-cran-zoo (1.8-12-2) ... 978s Selecting previously unselected package r-cran-lmtest. 978s Preparing to unpack .../271-r-cran-lmtest_0.9.40-1_arm64.deb ... 978s Unpacking r-cran-lmtest (0.9.40-1) ... 978s Selecting previously unselected package r-cran-lwgeom. 978s Preparing to unpack .../272-r-cran-lwgeom_0.2-13-3build2_arm64.deb ... 978s Unpacking r-cran-lwgeom (0.2-13-3build2) ... 978s Selecting previously unselected package r-cran-maps. 978s Preparing to unpack .../273-r-cran-maps_3.4.2-1_arm64.deb ... 978s Unpacking r-cran-maps (3.4.2-1) ... 978s Selecting previously unselected package r-cran-mapdata. 978s Preparing to unpack .../274-r-cran-mapdata_2.3.1-1_arm64.deb ... 978s Unpacking r-cran-mapdata (2.3.1-1) ... 980s Selecting previously unselected package r-cran-misctools. 980s Preparing to unpack .../275-r-cran-misctools_0.6-28-1_all.deb ... 980s Unpacking r-cran-misctools (0.6-28-1) ... 980s Selecting previously unselected package r-cran-sandwich. 980s Preparing to unpack .../276-r-cran-sandwich_3.1-0-1_all.deb ... 980s Unpacking r-cran-sandwich (3.1-0-1) ... 980s Selecting previously unselected package r-cran-maxlik. 980s Preparing to unpack .../277-r-cran-maxlik_1.5-2-1_all.deb ... 980s Unpacking r-cran-maxlik (1.5-2-1) ... 980s Selecting previously unselected package r-cran-rnetcdf. 980s Preparing to unpack .../278-r-cran-rnetcdf_2.9-1-1build2_arm64.deb ... 980s Unpacking r-cran-rnetcdf (2.9-1-1build2) ... 980s Selecting previously unselected package r-cran-tidyr. 980s Preparing to unpack .../279-r-cran-tidyr_1.3.1-1_arm64.deb ... 980s Unpacking r-cran-tidyr (1.3.1-1) ... 980s Selecting previously unselected package r-cran-ncmeta. 980s Preparing to unpack .../280-r-cran-ncmeta_0.3.6-1_all.deb ... 980s Unpacking r-cran-ncmeta (0.3.6-1) ... 980s Selecting previously unselected package r-cran-stars. 981s Preparing to unpack .../281-r-cran-stars_0.6-4-1_all.deb ... 981s Unpacking r-cran-stars (0.6-4-1) ... 981s Selecting previously unselected package r-cran-ncdfgeom. 981s Preparing to unpack .../282-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 981s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 981s Selecting previously unselected package r-cran-pbapply. 981s Preparing to unpack .../283-r-cran-pbapply_1.7-2-1_all.deb ... 981s Unpacking r-cran-pbapply (1.7-2-1) ... 981s Selecting previously unselected package r-cran-pcict. 981s Preparing to unpack .../284-r-cran-pcict_0.5-4.4-1_arm64.deb ... 981s Unpacking r-cran-pcict (0.5-4.4-1) ... 981s Selecting previously unselected package r-cran-pkgbuild. 981s Preparing to unpack .../285-r-cran-pkgbuild_1.4.3-1_all.deb ... 981s Unpacking r-cran-pkgbuild (1.4.3-1) ... 981s Selecting previously unselected package r-cran-rprojroot. 981s Preparing to unpack .../286-r-cran-rprojroot_2.0.4-1_all.deb ... 981s Unpacking r-cran-rprojroot (2.0.4-1) ... 981s Selecting previously unselected package r-cran-pkgload. 981s Preparing to unpack .../287-r-cran-pkgload_1.3.4-1_all.deb ... 981s Unpacking r-cran-pkgload (1.3.4-1) ... 982s Selecting previously unselected package r-cran-rbibutils. 982s Preparing to unpack .../288-r-cran-rbibutils_2.2.16-1_arm64.deb ... 982s Unpacking r-cran-rbibutils (2.2.16-1) ... 982s Selecting previously unselected package r-cran-rdpack. 982s Preparing to unpack .../289-r-cran-rdpack_2.6-1_all.deb ... 982s Unpacking r-cran-rdpack (2.6-1) ... 982s Selecting previously unselected package r-cran-plm. 982s Preparing to unpack .../290-r-cran-plm_2.6-4-1_all.deb ... 982s Unpacking r-cran-plm (2.6-4-1) ... 982s Selecting previously unselected package r-cran-praise. 982s Preparing to unpack .../291-r-cran-praise_1.0.0-4build1_all.deb ... 982s Unpacking r-cran-praise (1.0.0-4build1) ... 982s Selecting previously unselected package r-cran-randomforest. 982s Preparing to unpack .../292-r-cran-randomforest_4.7-1.1-1_arm64.deb ... 982s Unpacking r-cran-randomforest (4.7-1.1-1) ... 983s Selecting previously unselected package r-cran-sp. 983s Preparing to unpack .../293-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 983s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 983s Selecting previously unselected package r-cran-terra. 983s Preparing to unpack .../294-r-cran-terra_1.7-65-1build2_arm64.deb ... 983s Unpacking r-cran-terra (1.7-65-1build2) ... 983s Selecting previously unselected package r-cran-raster. 983s Preparing to unpack .../295-r-cran-raster_3.6-26-1_arm64.deb ... 983s Unpacking r-cran-raster (3.6-26-1) ... 983s Selecting previously unselected package r-cran-rematch2. 983s Preparing to unpack .../296-r-cran-rematch2_2.1.2-2build1_all.deb ... 983s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 984s Selecting previously unselected package r-cran-tinytex. 984s Preparing to unpack .../297-r-cran-tinytex_0.49-1_all.deb ... 984s Unpacking r-cran-tinytex (0.49-1) ... 984s Selecting previously unselected package libjs-modernizr. 984s Preparing to unpack .../298-libjs-modernizr_3.13.0-0.1_all.deb ... 984s Unpacking libjs-modernizr (3.13.0-0.1) ... 984s Selecting previously unselected package r-cran-xtable. 984s Preparing to unpack .../299-r-cran-xtable_1%3a1.8-4-2_all.deb ... 984s Unpacking r-cran-xtable (1:1.8-4-2) ... 984s Selecting previously unselected package r-cran-sourcetools. 984s Preparing to unpack .../300-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 984s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 984s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 984s Preparing to unpack .../301-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 984s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 984s Selecting previously unselected package r-cran-shiny. 984s Preparing to unpack .../302-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ... 984s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ... 985s Selecting previously unselected package r-cran-rmarkdown. 985s Preparing to unpack .../303-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 985s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 985s Selecting previously unselected package r-cran-survival. 985s Preparing to unpack .../304-r-cran-survival_3.5-8-1_arm64.deb ... 985s Unpacking r-cran-survival (3.5-8-1) ... 985s Selecting previously unselected package r-cran-rpart. 985s Preparing to unpack .../305-r-cran-rpart_4.1.23-1build1_arm64.deb ... 985s Unpacking r-cran-rpart (4.1.23-1build1) ... 985s Selecting previously unselected package r-cran-xts. 985s Preparing to unpack .../306-r-cran-xts_0.13.2-1_arm64.deb ... 985s Unpacking r-cran-xts (0.13.2-1) ... 985s Selecting previously unselected package r-cran-spacetime. 985s Preparing to unpack .../307-r-cran-spacetime_1.3-1-1_all.deb ... 985s Unpacking r-cran-spacetime (1.3-1-1) ... 986s Selecting previously unselected package r-cran-spatstat.utils. 986s Preparing to unpack .../308-r-cran-spatstat.utils_3.0-4-1_arm64.deb ... 986s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 986s Selecting previously unselected package r-cran-spatstat.data. 986s Preparing to unpack .../309-r-cran-spatstat.data_3.0-4-1_all.deb ... 986s Unpacking r-cran-spatstat.data (3.0-4-1) ... 986s Selecting previously unselected package r-cran-spatstat.geom. 986s Preparing to unpack .../310-r-cran-spatstat.geom_3.2-9-1_arm64.deb ... 986s Unpacking r-cran-spatstat.geom (3.2-9-1) ... 986s Selecting previously unselected package r-cran-spatstat.random. 986s Preparing to unpack .../311-r-cran-spatstat.random_3.2-3-1_arm64.deb ... 986s Unpacking r-cran-spatstat.random (3.2-3-1) ... 986s Selecting previously unselected package r-cran-tensor. 986s Preparing to unpack .../312-r-cran-tensor_1.5-4_all.deb ... 986s Unpacking r-cran-tensor (1.5-4) ... 986s Selecting previously unselected package r-cran-spatstat.sparse. 986s Preparing to unpack .../313-r-cran-spatstat.sparse_3.0-3-1_arm64.deb ... 986s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 986s Selecting previously unselected package r-cran-spatstat.explore. 986s Preparing to unpack .../314-r-cran-spatstat.explore_3.2-5-1_arm64.deb ... 986s Unpacking r-cran-spatstat.explore (3.2-5-1) ... 987s Selecting previously unselected package r-cran-spatstat.model. 987s Preparing to unpack .../315-r-cran-spatstat.model_3.2-11-1_arm64.deb ... 987s Unpacking r-cran-spatstat.model (3.2-11-1) ... 987s Selecting previously unselected package r-cran-spatstat.linnet. 987s Preparing to unpack .../316-r-cran-spatstat.linnet_3.1-5-1_arm64.deb ... 987s Unpacking r-cran-spatstat.linnet (3.1-5-1) ... 987s Selecting previously unselected package r-cran-spatstat. 987s Preparing to unpack .../317-r-cran-spatstat_3.0-7-1_arm64.deb ... 987s Unpacking r-cran-spatstat (3.0-7-1) ... 987s Selecting previously unselected package r-cran-waldo. 987s Preparing to unpack .../318-r-cran-waldo_0.5.2-1build1_all.deb ... 987s Unpacking r-cran-waldo 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libjs-es5-shim (4.6.7-2) ... 992s Setting up zip (3.0-13build1) ... 992s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu2) ... 992s Setting up libblas3:arm64 (3.12.0-3build1) ... 992s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 992s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 992s Setting up libpkgconf3:arm64 (1.8.1-2build1) ... 992s Setting up gcc-13-base:arm64 (13.2.0-23ubuntu4) ... 992s Setting up libcfitsio10t64:arm64 (4.3.1-1.1build2) ... 992s Setting up libjs-d3 (3.5.17-4) ... 992s Setting up libmpc3:arm64 (1.3.1-1build1) ... 992s Setting up libatomic1:arm64 (14.1.0-1ubuntu1) ... 992s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 992s Setting up icu-devtools (74.2-1ubuntu3) ... 992s Setting up unixodbc-common (2.3.12-1build2) ... 992s Setting up pkgconf-bin (1.8.1-2build1) ... 992s Setting up libltdl7:arm64 (2.4.7-7build1) ... 992s Setting up 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/usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 994s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 994s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 994s Setting up r-cran-rbibutils (2.2.16-1) ... 994s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 994s Setting up r-cran-rprojroot (2.0.4-1) ... 994s Setting up r-cran-fnn (1.1.4-1) ... 994s Setting up r-cran-deldir (2.0-4-1build1) ... 994s Setting up r-cran-goftest (1.2-3-1) ... 994s Setting up r-cran-randomforest (4.7-1.1-1) ... 994s Setting up r-cran-askpass (1.2.0-1) ... 994s Setting up r-cran-fastmap (1.1.1-1) ... 994s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 994s Setting up r-cran-rnetcdf (2.9-1-1build2) ... 994s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 994s Setting up r-cran-sp 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(4:13.2.0-7ubuntu1) ... 994s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 994s Setting up r-cran-cachem (1.0.8-1) ... 994s Setting up r-cran-lmtest (0.9.40-1) ... 994s Setting up r-cran-sass (0.4.9+dfsg-1) ... 994s Setting up build-essential (12.10ubuntu1) ... 994s Setting up r-cran-globals (0.16.3-1) ... 994s Setting up r-cran-vctrs (0.6.5-1) ... 994s Setting up r-cran-rcppeigen (0.3.4.0.0-1build1) ... 994s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 994s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ... 994s Setting up r-base-dev (4.4.0-2) ... 994s Setting up r-cran-misctools (0.6-28-1) ... 994s Setting up r-cran-stringr (1.5.1-1) ... 994s Setting up r-cran-class (7.3-22-2build1) ... 994s Setting up r-cran-callr (3.7.6-1) ... 994s Setting up r-cran-desc (1.4.3-1) ... 994s Setting up r-cran-munsell (0.5.0-2build1) ... 994s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 994s Setting up r-cran-sandwich (3.1-0-1) ... 994s Setting up r-cran-fontawesome (0.5.2-1) ... 994s Setting up r-cran-survival (3.5-8-1) ... 994s Setting up r-cran-xts (0.13.2-1) ... 994s Setting up r-cran-rdpack (2.6-1) ... 994s Setting up r-cran-tweenr (2.0.3-1) ... 994s Setting up r-cran-future (1.33.1+dfsg-1) ... 994s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 994s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 994s Setting up r-cran-future.apply (1.11.2+dfsg-1) ... 994s Setting up r-cran-raster (3.6-26-1) ... 994s Setting up r-cran-systemfonts (1.0.5-1) ... 994s Setting up r-cran-httr (1.4.7+dfsg-1) ... 994s Setting up r-cran-gridextra (2.3-3build1) ... 994s Setting up r-cran-scales (1.3.0-1) ... 994s Setting up r-cran-memoise (2.0.1-1) ... 994s Setting up r-cran-covr (3.6.4+dfsg-1) ... 994s Setting up r-cran-promises (1.3.0+dfsg-1) ... 994s Setting up r-cran-purrr (1.0.2-1) ... 994s Setting up r-cran-e1071 (1.7-14-1) ... 994s Setting up r-cran-spatstat.data (3.0-4-1) ... 994s Setting up r-cran-maxlik (1.5-2-1) ... 994s Setting up r-cran-spacetime (1.3-1-1) ... 994s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 994s Setting up r-cran-spatstat.geom (3.2-9-1) ... 994s Setting up r-cran-pkgbuild (1.4.3-1) ... 994s Setting up r-cran-dplyr (1.1.4-1) ... 994s Setting up r-cran-pkgload (1.3.4-1) ... 994s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 994s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 994s Setting up r-cran-rematch2 (2.1.2-2build1) ... 994s Setting up r-cran-rpart (4.1.23-1build1) ... 994s Setting up r-cran-spatstat.random (3.2-3-1) ... 994s Setting up r-cran-plm (2.6-4-1) ... 994s Setting up r-cran-viridis (0.6.5-1) ... 994s Setting up r-cran-classint (0.4-10+dfsg-1) ... 994s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 994s Setting up r-cran-spatstat.explore (3.2-5-1) ... 994s Setting up r-cran-ggthemes (5.1.0-1) ... 994s Setting up r-cran-waldo (0.5.2-1build1) ... 994s Setting up r-cran-tidyr (1.3.1-1) ... 994s Setting up r-cran-sf (1.0-16+dfsg-1) ... 994s Setting up r-cran-stars (0.6-4-1) ... 994s Setting up r-cran-ggforce (0.4.2-1) ... 994s Setting up r-cran-spatstat.model (3.2-11-1) ... 994s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... 994s Setting up r-cran-areal (0.1.8+dfsg-2) ... 994s Setting up r-cran-testthat (3.2.1-1) ... 994s Setting up r-cran-lwgeom (0.2-13-3build2) ... 994s Setting up r-cran-ncmeta (0.3.6-1) ... 994s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 994s Setting up r-cran-spatstat.linnet (3.1-5-1) ... 994s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 994s Setting up r-cran-spatstat (3.0-7-1) ... 994s Setting up autopkgtest-satdep (0) ... 994s Processing triggers for man-db (2.12.1-1) ... 997s Processing triggers for install-info (7.1-3build2) ... 997s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 1037s (Reading database ... 104414 files and directories currently installed.) 1037s Removing autopkgtest-satdep (0) ... 1040s autopkgtest [09:43:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1040s autopkgtest [09:43:59]: test pkg-r-autopkgtest: [----------------------- 1041s Test: Try to load the R library stars 1041s 1041s R version 4.4.0 (2024-04-24) -- "Puppy Cup" 1041s Copyright (C) 2024 The R Foundation for Statistical Computing 1041s Platform: aarch64-unknown-linux-gnu 1041s 1041s R is free software and comes with ABSOLUTELY NO WARRANTY. 1041s You are welcome to redistribute it under certain conditions. 1041s Type 'license()' or 'licence()' for distribution details. 1041s 1041s R is a collaborative project with many contributors. 1041s Type 'contributors()' for more information and 1041s 'citation()' on how to cite R or R packages in publications. 1041s 1041s Type 'demo()' for some demos, 'help()' for on-line help, or 1041s 'help.start()' for an HTML browser interface to help. 1041s Type 'q()' to quit R. 1041s 1041s > library('stars') 1041s Loading required package: abind 1041s Loading required package: sf 1043s Linking to GEOS 3.12.1, GDAL 3.8.5, PROJ 9.4.0; sf_use_s2() is TRUE 1043s > 1043s > 1043s Other tests are currently unsupported! 1043s They will be progressively added. 1044s autopkgtest [09:44:03]: test pkg-r-autopkgtest: -----------------------] 1044s autopkgtest [09:44:03]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1044s pkg-r-autopkgtest PASS 1045s autopkgtest [09:44:04]: @@@@@@@@@@@@@@@@@@@@ summary 1045s run-unit-test PASS 1045s pkg-r-autopkgtest PASS 1060s flock: timeout while waiting to get lock 1060s Creating nova instance adt-oracular-arm64-r-cran-stars-20240524-092638-juju-7f2275-prod-proposed-migration-environment-3-a65eb06e-913b-4c18-ad28-f32c1623e75b from image adt/ubuntu-oracular-arm64-server-20240524.img (UUID 9ddfed2a-4e9c-460c-af7b-bfa3e6fa86ca)... 1060s Creating nova instance adt-oracular-arm64-r-cran-stars-20240524-092638-juju-7f2275-prod-proposed-migration-environment-3-a65eb06e-913b-4c18-ad28-f32c1623e75b from image adt/ubuntu-oracular-arm64-server-20240524.img (UUID 9ddfed2a-4e9c-460c-af7b-bfa3e6fa86ca)...