0s autopkgtest [16:11:26]: starting date and time: 2024-07-26 16:11:26+0000
  0s autopkgtest [16:11:26]: git checkout: fd3bed09 nova: allow more retries for quota issues
  0s autopkgtest [16:11:26]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ukfji117/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-bigmemory --apt-upgrade r-cran-bigmemory --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-bigmemory/4.6.4-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-40.secgroup --name adt-oracular-arm64-r-cran-bigmemory-20240726-161126-juju-7f2275-prod-proposed-migration-environment-3-847f70ee-2758-4d22-908f-ae7906a54243 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
100s autopkgtest [16:13:06]: testbed dpkg architecture: arm64
101s autopkgtest [16:13:07]: testbed apt version: 2.9.6
101s autopkgtest [16:13:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup
102s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
105s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [436 kB]
106s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB]
106s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
106s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B]
106s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [88.6 kB]
106s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2116 B]
106s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB]
106s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B]
106s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [482 kB]
107s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8752 B]
107s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8744 B]
107s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B]
114s Fetched 1261 kB in 5s (243 kB/s)
114s Reading package lists...
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Calculating upgrade...
119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
120s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
120s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
120s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
121s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
121s Reading package lists...
122s Reading package lists...
122s Building dependency tree...
122s Reading state information...
122s Calculating upgrade...
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
128s autopkgtest [16:13:34]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024
129s autopkgtest [16:13:35]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bigmemory
132s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe r-cran-bigmemory 4.6.4-1 (dsc) [2219 B]
132s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe r-cran-bigmemory 4.6.4-1 (tar) [72.3 kB]
132s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe r-cran-bigmemory 4.6.4-1 (diff) [3096 B]
133s gpgv: Signature made Wed Jan 17 13:08:49 2024 UTC
133s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
133s gpgv:                issuer "tille@debian.org"
133s gpgv: Can't check signature: No public key
133s dpkg-source: warning: cannot verify inline signature for ./r-cran-bigmemory_4.6.4-1.dsc: no acceptable signature found
133s autopkgtest [16:13:39]: testing package r-cran-bigmemory version 4.6.4-1
133s autopkgtest [16:13:39]: build not needed
135s autopkgtest [16:13:41]: test run-unit-test: preparing testbed
136s Reading package lists...
137s Building dependency tree...
137s Reading state information...
137s Starting pkgProblemResolver with broken count: 0
137s Starting 2 pkgProblemResolver with broken count: 0
137s Done
139s The following additional packages will be installed:
139s   fontconfig gcc-13-base libasan8 libatomic1 libblas3 libboost-dev
139s   libboost1.83-dev libcairo2 libdatrie1 libgcc-13-dev libgfortran5 libhwasan0
139s   libice6 libitm1 liblapack3 liblsan0 libpango-1.0-0 libpangocairo-1.0-0
139s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libsm6
139s   libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtk8.6 libtsan2 libubsan1
139s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler
139s   r-base-core r-cran-bh r-cran-bigmemory r-cran-bigmemory.sri r-cran-brio
139s   r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
139s   r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
139s   r-cran-jsonlite r-cran-lifecycle r-cran-littler r-cran-magrittr
139s   r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
139s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp
139s   r-cran-rematch2 r-cran-remotes r-cran-rlang r-cran-rprojroot r-cran-testthat
139s   r-cran-tibble r-cran-utf8 r-cran-uuid r-cran-vctrs r-cran-waldo r-cran-withr
139s   unzip x11-common xdg-utils zip
139s Suggested packages:
139s   libboost-doc libboost1.83-doc libboost-atomic1.83-dev
139s   libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
139s   libboost-contract1.83-dev libboost-coroutine1.83-dev
139s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
139s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
139s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
139s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
139s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
139s   libboost-numpy1.83-dev libboost-program-options1.83-dev
139s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
139s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
139s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
139s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
139s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
139s   libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib
139s   r-base-html r-cran-rstudioapi r-cran-knitr r-cran-rmarkdown r-cran-getopt
139s   r-cran-covr r-cran-bit64 r-cran-dbi r-cran-dplyr r-cran-formattable
139s   r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales
139s   r-cran-stringi r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline
139s   r-cran-bench r-cran-blob r-cran-here r-cran-hms r-cran-htmltools
139s   r-cran-purrr r-cran-tidyr
139s Recommended packages:
139s   r-recommended r-base-dev r-doc-html r-cran-covr r-cran-mockery
139s   r-cran-spelling r-cran-htmltools r-cran-htmlwidgets r-cran-knitr
139s   r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-gh r-cran-ggplot2
139s   r-cran-lattice r-cran-unitizer r-cran-dbi r-cran-dplyr r-cran-rsqlite
139s   r-cran-httr r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse
139s   r-cran-lubridate r-cran-cpp11 r-cran-bitops r-cran-mathjaxr r-cran-usethis
139s   r-cran-codetools r-cran-curl r-cran-webfakes r-cran-pingr r-cran-brew
139s   r-cran-git2r r-cran-mockr r-cran-shiny r-cran-xml2 r-cran-data.table
139s   r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown
139s   r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
139s   x11-utils x11-xserver-utils
139s The following NEW packages will be installed:
139s   autopkgtest-satdep fontconfig gcc-13-base libasan8 libatomic1 libblas3
139s   libboost-dev libboost1.83-dev libcairo2 libdatrie1 libgcc-13-dev
139s   libgfortran5 libhwasan0 libice6 libitm1 liblapack3 liblsan0 libpango-1.0-0
139s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
139s   libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtk8.6 libtsan2
139s   libubsan1 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
139s   littler r-base-core r-cran-bh r-cran-bigmemory r-cran-bigmemory.sri
139s   r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
139s   r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
139s   r-cran-jsonlite r-cran-lifecycle r-cran-littler r-cran-magrittr
139s   r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
139s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp
139s   r-cran-rematch2 r-cran-remotes r-cran-rlang r-cran-rprojroot r-cran-testthat
139s   r-cran-tibble r-cran-utf8 r-cran-uuid r-cran-vctrs r-cran-waldo r-cran-withr
139s   unzip x11-common xdg-utils zip
140s 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded.
140s Need to get 76.4 MB/76.4 MB of archives.
140s After this operation, 336 MB of additional disk space will be used.
140s Get:1 /tmp/autopkgtest.bzKRoH/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [728 B]
140s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB]
140s Get:3 http://ftpmaster.internal/ubuntu oracular/universe arm64 gcc-13-base arm64 13.3.0-3ubuntu1 [50.9 kB]
140s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libasan8 arm64 14.1.0-5ubuntu1 [2894 kB]
141s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14.1.0-5ubuntu1 [11.5 kB]
141s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB]
141s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libitm1 arm64 14.1.0-5ubuntu1 [27.9 kB]
141s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 liblsan0 arm64 14.1.0-5ubuntu1 [1283 kB]
142s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 libtsan2 arm64 14.1.0-5ubuntu1 [2685 kB]
142s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 libubsan1 arm64 14.1.0-5ubuntu1 [1152 kB]
142s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libhwasan0 arm64 14.1.0-5ubuntu1 [1598 kB]
143s Get:12 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgcc-13-dev arm64 13.3.0-3ubuntu1 [2456 kB]
143s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 libstdc++-13-dev arm64 13.3.0-3ubuntu1 [2392 kB]
143s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libboost1.83-dev arm64 1.83.0-3ubuntu1 [10.7 MB]
144s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B]
144s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB]
144s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
144s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
144s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
144s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 libcairo2 arm64 1.18.0-3build1 [555 kB]
144s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
144s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-5ubuntu1 [438 kB]
144s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
144s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB]
144s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB]
144s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
144s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
144s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 libpango-1.0-0 arm64 1.54.0+ds-1 [230 kB]
144s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-1 [41.7 kB]
144s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-1 [27.2 kB]
144s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB]
144s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B]
144s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB]
144s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB]
144s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
144s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
144s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB]
144s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
144s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 zip arm64 3.0-13build1 [171 kB]
144s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 unzip arm64 6.0-28ubuntu5 [176 kB]
144s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB]
144s Get:42 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-base-core arm64 4.4.1-1 [28.3 MB]
145s Get:43 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-littler arm64 0.3.20-1 [96.4 kB]
145s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 littler all 0.3.20-1 [2486 B]
145s Get:45 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
145s Get:46 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB]
145s Get:47 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
145s Get:48 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
145s Get:49 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-uuid arm64 1.2-0-1 [47.9 kB]
145s Get:50 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 r-cran-bigmemory arm64 4.6.4-1 [437 kB]
145s Get:51 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
145s Get:52 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB]
145s Get:53 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
145s Get:54 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-processx arm64 3.8.4-1 [352 kB]
145s Get:55 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
145s Get:56 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
145s Get:57 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
145s Get:58 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
145s Get:59 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
145s Get:60 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-digest arm64 0.6.36-1 [197 kB]
145s Get:61 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-evaluate all 0.24.0-1 [93.5 kB]
145s Get:62 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
145s Get:63 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fs arm64 1.6.4+dfsg-1 [244 kB]
145s Get:64 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
145s Get:65 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
145s Get:66 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rlang arm64 1.1.4-1 [1707 kB]
145s Get:67 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
145s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
145s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
145s Get:70 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
145s Get:71 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
145s Get:72 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgbuild all 1.4.4-1 [212 kB]
145s Get:73 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
145s Get:74 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB]
145s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
145s Get:76 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB]
145s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
145s Get:78 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
145s Get:79 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
145s Get:80 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-remotes all 2.5.0+dfsg-1 [447 kB]
145s Get:81 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB]
145s Get:82 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-testthat arm64 3.2.1.1-1 [1629 kB]
146s Preconfiguring packages ...
146s Fetched 76.4 MB in 6s (12.7 MB/s)
146s Selecting previously unselected package fontconfig.
146s (Reading database ... 
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(Reading database ... 78607 files and directories currently installed.)
146s Preparing to unpack .../00-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ...
146s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
146s Selecting previously unselected package gcc-13-base:arm64.
146s Preparing to unpack .../01-gcc-13-base_13.3.0-3ubuntu1_arm64.deb ...
146s Unpacking gcc-13-base:arm64 (13.3.0-3ubuntu1) ...
146s Selecting previously unselected package libasan8:arm64.
146s Preparing to unpack .../02-libasan8_14.1.0-5ubuntu1_arm64.deb ...
146s Unpacking libasan8:arm64 (14.1.0-5ubuntu1) ...
146s Selecting previously unselected package libatomic1:arm64.
147s Preparing to unpack .../03-libatomic1_14.1.0-5ubuntu1_arm64.deb ...
147s Unpacking libatomic1:arm64 (14.1.0-5ubuntu1) ...
147s Selecting previously unselected package libblas3:arm64.
147s Preparing to unpack .../04-libblas3_3.12.0-3build1_arm64.deb ...
147s Unpacking libblas3:arm64 (3.12.0-3build1) ...
147s Selecting previously unselected package libitm1:arm64.
147s Preparing to unpack .../05-libitm1_14.1.0-5ubuntu1_arm64.deb ...
147s Unpacking libitm1:arm64 (14.1.0-5ubuntu1) ...
147s Selecting previously unselected package liblsan0:arm64.
147s Preparing to unpack .../06-liblsan0_14.1.0-5ubuntu1_arm64.deb ...
147s Unpacking liblsan0:arm64 (14.1.0-5ubuntu1) ...
147s Selecting previously unselected package libtsan2:arm64.
147s Preparing to unpack .../07-libtsan2_14.1.0-5ubuntu1_arm64.deb ...
147s Unpacking libtsan2:arm64 (14.1.0-5ubuntu1) ...
147s Selecting previously unselected package libubsan1:arm64.
147s Preparing to unpack .../08-libubsan1_14.1.0-5ubuntu1_arm64.deb ...
147s Unpacking libubsan1:arm64 (14.1.0-5ubuntu1) ...
147s Selecting previously unselected package libhwasan0:arm64.
147s Preparing to unpack .../09-libhwasan0_14.1.0-5ubuntu1_arm64.deb ...
147s Unpacking libhwasan0:arm64 (14.1.0-5ubuntu1) ...
147s Selecting previously unselected package libgcc-13-dev:arm64.
147s Preparing to unpack .../10-libgcc-13-dev_13.3.0-3ubuntu1_arm64.deb ...
147s Unpacking libgcc-13-dev:arm64 (13.3.0-3ubuntu1) ...
147s Selecting previously unselected package libstdc++-13-dev:arm64.
147s Preparing to unpack .../11-libstdc++-13-dev_13.3.0-3ubuntu1_arm64.deb ...
147s Unpacking libstdc++-13-dev:arm64 (13.3.0-3ubuntu1) ...
148s Selecting previously unselected package libboost1.83-dev:arm64.
148s Preparing to unpack .../12-libboost1.83-dev_1.83.0-3ubuntu1_arm64.deb ...
148s Unpacking libboost1.83-dev:arm64 (1.83.0-3ubuntu1) ...
150s Selecting previously unselected package libboost-dev:arm64.
150s Preparing to unpack .../13-libboost-dev_1.83.0.2ubuntu1_arm64.deb ...
150s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ...
150s Selecting previously unselected package libpixman-1-0:arm64.
150s Preparing to unpack .../14-libpixman-1-0_0.42.2-1build1_arm64.deb ...
150s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ...
150s Selecting previously unselected package libxcb-render0:arm64.
150s Preparing to unpack .../15-libxcb-render0_1.17.0-2_arm64.deb ...
150s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
150s Selecting previously unselected package libxcb-shm0:arm64.
150s Preparing to unpack .../16-libxcb-shm0_1.17.0-2_arm64.deb ...
150s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
150s Selecting previously unselected package libxrender1:arm64.
150s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
150s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
150s Selecting previously unselected package libcairo2:arm64.
150s Preparing to unpack .../18-libcairo2_1.18.0-3build1_arm64.deb ...
150s Unpacking libcairo2:arm64 (1.18.0-3build1) ...
150s Selecting previously unselected package libdatrie1:arm64.
150s Preparing to unpack .../19-libdatrie1_0.2.13-3build1_arm64.deb ...
150s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
150s Selecting previously unselected package libgfortran5:arm64.
151s Preparing to unpack .../20-libgfortran5_14.1.0-5ubuntu1_arm64.deb ...
151s Unpacking libgfortran5:arm64 (14.1.0-5ubuntu1) ...
151s Selecting previously unselected package x11-common.
152s Preparing to unpack .../21-x11-common_1%3a7.7+23ubuntu3_all.deb ...
152s Unpacking x11-common (1:7.7+23ubuntu3) ...
152s Selecting previously unselected package libice6:arm64.
152s Preparing to unpack .../22-libice6_2%3a1.0.10-1build3_arm64.deb ...
152s Unpacking libice6:arm64 (2:1.0.10-1build3) ...
152s Selecting previously unselected package liblapack3:arm64.
152s Preparing to unpack .../23-liblapack3_3.12.0-3build1_arm64.deb ...
152s Unpacking liblapack3:arm64 (3.12.0-3build1) ...
152s Selecting previously unselected package libthai-data.
152s Preparing to unpack .../24-libthai-data_0.1.29-2build1_all.deb ...
152s Unpacking libthai-data (0.1.29-2build1) ...
152s Selecting previously unselected package libthai0:arm64.
153s Preparing to unpack .../25-libthai0_0.1.29-2build1_arm64.deb ...
153s Unpacking libthai0:arm64 (0.1.29-2build1) ...
153s Selecting previously unselected package libpango-1.0-0:arm64.
153s Preparing to unpack .../26-libpango-1.0-0_1.54.0+ds-1_arm64.deb ...
153s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-1) ...
153s Selecting previously unselected package libpangoft2-1.0-0:arm64.
153s Preparing to unpack .../27-libpangoft2-1.0-0_1.54.0+ds-1_arm64.deb ...
153s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ...
153s Selecting previously unselected package libpangocairo-1.0-0:arm64.
153s Preparing to unpack .../28-libpangocairo-1.0-0_1.54.0+ds-1_arm64.deb ...
153s Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ...
153s Selecting previously unselected package libpaper1:arm64.
153s Preparing to unpack .../29-libpaper1_1.1.29build1_arm64.deb ...
153s Unpacking libpaper1:arm64 (1.1.29build1) ...
153s Selecting previously unselected package libpaper-utils.
153s Preparing to unpack .../30-libpaper-utils_1.1.29build1_arm64.deb ...
153s Unpacking libpaper-utils (1.1.29build1) ...
153s Selecting previously unselected package libsm6:arm64.
153s Preparing to unpack .../31-libsm6_2%3a1.2.3-1build3_arm64.deb ...
153s Unpacking libsm6:arm64 (2:1.2.3-1build3) ...
153s Selecting previously unselected package libtcl8.6:arm64.
153s Preparing to unpack .../32-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ...
153s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ...
153s Selecting previously unselected package libxft2:arm64.
153s Preparing to unpack .../33-libxft2_2.3.6-1build1_arm64.deb ...
153s Unpacking libxft2:arm64 (2.3.6-1build1) ...
154s Selecting previously unselected package libxss1:arm64.
154s Preparing to unpack .../34-libxss1_1%3a1.2.3-1build3_arm64.deb ...
154s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
154s Selecting previously unselected package libtk8.6:arm64.
154s Preparing to unpack .../35-libtk8.6_8.6.14-1build1_arm64.deb ...
154s Unpacking libtk8.6:arm64 (8.6.14-1build1) ...
154s Selecting previously unselected package libxt6t64:arm64.
154s Preparing to unpack .../36-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ...
154s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ...
154s Selecting previously unselected package zip.
154s Preparing to unpack .../37-zip_3.0-13build1_arm64.deb ...
154s Unpacking zip (3.0-13build1) ...
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154s Preparing to unpack .../38-unzip_6.0-28ubuntu5_arm64.deb ...
154s Unpacking unzip (6.0-28ubuntu5) ...
154s Selecting previously unselected package xdg-utils.
154s Preparing to unpack .../39-xdg-utils_1.2.1-0ubuntu1_all.deb ...
154s Unpacking xdg-utils (1.2.1-0ubuntu1) ...
154s Selecting previously unselected package r-base-core.
154s Preparing to unpack .../40-r-base-core_4.4.1-1_arm64.deb ...
154s Unpacking r-base-core (4.4.1-1) ...
154s Selecting previously unselected package r-cran-littler.
154s Preparing to unpack .../41-r-cran-littler_0.3.20-1_arm64.deb ...
154s Unpacking r-cran-littler (0.3.20-1) ...
154s Selecting previously unselected package littler.
154s Preparing to unpack .../42-littler_0.3.20-1_all.deb ...
154s Unpacking littler (0.3.20-1) ...
155s Selecting previously unselected package r-cran-bh.
155s Preparing to unpack .../43-r-cran-bh_1.84.0-1_all.deb ...
155s Unpacking r-cran-bh (1.84.0-1) ...
155s Selecting previously unselected package r-cran-bigmemory.sri.
155s Preparing to unpack .../44-r-cran-bigmemory.sri_0.1.8-1_all.deb ...
155s Unpacking r-cran-bigmemory.sri (0.1.8-1) ...
155s Selecting previously unselected package r-cran-pkgkitten.
155s Preparing to unpack .../45-r-cran-pkgkitten_0.2.3-1_all.deb ...
155s Unpacking r-cran-pkgkitten (0.2.3-1) ...
155s Selecting previously unselected package r-cran-rcpp.
155s Preparing to unpack .../46-r-cran-rcpp_1.0.12-1_arm64.deb ...
155s Unpacking r-cran-rcpp (1.0.12-1) ...
155s Selecting previously unselected package r-cran-uuid.
155s Preparing to unpack .../47-r-cran-uuid_1.2-0-1_arm64.deb ...
155s Unpacking r-cran-uuid (1.2-0-1) ...
155s Selecting previously unselected package r-cran-bigmemory.
155s Preparing to unpack .../48-r-cran-bigmemory_4.6.4-1_arm64.deb ...
155s Unpacking r-cran-bigmemory (4.6.4-1) ...
155s Selecting previously unselected package r-cran-brio.
155s Preparing to unpack .../49-r-cran-brio_1.1.5-1_arm64.deb ...
155s Unpacking r-cran-brio (1.1.5-1) ...
155s Selecting previously unselected package r-cran-ps.
155s Preparing to unpack .../50-r-cran-ps_1.7.6-1_arm64.deb ...
155s Unpacking r-cran-ps (1.7.6-1) ...
155s Selecting previously unselected package r-cran-r6.
155s Preparing to unpack .../51-r-cran-r6_2.5.1-1_all.deb ...
155s Unpacking r-cran-r6 (2.5.1-1) ...
155s Selecting previously unselected package r-cran-processx.
155s Preparing to unpack .../52-r-cran-processx_3.8.4-1_arm64.deb ...
155s Unpacking r-cran-processx (3.8.4-1) ...
155s Selecting previously unselected package r-cran-callr.
155s Preparing to unpack .../53-r-cran-callr_3.7.6-1_all.deb ...
155s Unpacking r-cran-callr (3.7.6-1) ...
155s Selecting previously unselected package r-cran-cli.
155s Preparing to unpack .../54-r-cran-cli_3.6.2-1_arm64.deb ...
155s Unpacking r-cran-cli (3.6.2-1) ...
155s Selecting previously unselected package r-cran-crayon.
155s Preparing to unpack .../55-r-cran-crayon_1.5.2-1_all.deb ...
155s Unpacking r-cran-crayon (1.5.2-1) ...
155s Selecting previously unselected package r-cran-desc.
156s Preparing to unpack .../56-r-cran-desc_1.4.3-1_all.deb ...
156s Unpacking r-cran-desc (1.4.3-1) ...
156s Selecting previously unselected package r-cran-diffobj.
156s Preparing to unpack .../57-r-cran-diffobj_0.3.5-1_arm64.deb ...
156s Unpacking r-cran-diffobj (0.3.5-1) ...
156s Selecting previously unselected package r-cran-digest.
156s Preparing to unpack .../58-r-cran-digest_0.6.36-1_arm64.deb ...
156s Unpacking r-cran-digest (0.6.36-1) ...
156s Selecting previously unselected package r-cran-evaluate.
156s Preparing to unpack .../59-r-cran-evaluate_0.24.0-1_all.deb ...
156s Unpacking r-cran-evaluate (0.24.0-1) ...
156s Selecting previously unselected package r-cran-fansi.
156s Preparing to unpack .../60-r-cran-fansi_1.0.5-1_arm64.deb ...
156s Unpacking r-cran-fansi (1.0.5-1) ...
156s Selecting previously unselected package r-cran-fs.
156s Preparing to unpack .../61-r-cran-fs_1.6.4+dfsg-1_arm64.deb ...
156s Unpacking r-cran-fs (1.6.4+dfsg-1) ...
156s Selecting previously unselected package r-cran-glue.
157s Preparing to unpack .../62-r-cran-glue_1.7.0-1_arm64.deb ...
157s Unpacking r-cran-glue (1.7.0-1) ...
157s Selecting previously unselected package r-cran-jsonlite.
158s Preparing to unpack .../63-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ...
158s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
158s Selecting previously unselected package r-cran-rlang.
159s Preparing to unpack .../64-r-cran-rlang_1.1.4-1_arm64.deb ...
159s Unpacking r-cran-rlang (1.1.4-1) ...
159s Selecting previously unselected package r-cran-lifecycle.
159s Preparing to unpack .../65-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
159s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
159s Selecting previously unselected package r-cran-magrittr.
159s Preparing to unpack .../66-r-cran-magrittr_2.0.3-1_arm64.deb ...
159s Unpacking r-cran-magrittr (2.0.3-1) ...
159s Selecting previously unselected package r-cran-utf8.
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159s Unpacking r-cran-utf8 (1.2.4-1) ...
159s Selecting previously unselected package r-cran-vctrs.
159s Preparing to unpack .../68-r-cran-vctrs_0.6.5-1_arm64.deb ...
159s Unpacking r-cran-vctrs (0.6.5-1) ...
159s Selecting previously unselected package r-cran-pillar.
159s Preparing to unpack .../69-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
159s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
159s Selecting previously unselected package r-cran-pkgbuild.
159s Preparing to unpack .../70-r-cran-pkgbuild_1.4.4-1_all.deb ...
159s Unpacking r-cran-pkgbuild (1.4.4-1) ...
159s Selecting previously unselected package r-cran-pkgconfig.
159s Preparing to unpack .../71-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
159s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
159s Selecting previously unselected package r-cran-rprojroot.
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159s Unpacking r-cran-rprojroot (2.0.4-1) ...
159s Selecting previously unselected package r-cran-withr.
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159s Unpacking r-cran-withr (2.5.0-1) ...
159s Selecting previously unselected package r-cran-pkgload.
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159s Selecting previously unselected package r-cran-praise.
159s Preparing to unpack .../75-r-cran-praise_1.0.0-4build1_all.deb ...
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160s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
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160s Unpacking r-cran-rematch2 (2.1.2-2build1) ...
160s Selecting previously unselected package r-cran-remotes.
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160s Unpacking r-cran-remotes (2.5.0+dfsg-1) ...
160s Selecting previously unselected package r-cran-waldo.
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160s Unpacking r-cran-waldo (0.5.2-1build1) ...
160s Selecting previously unselected package r-cran-testthat.
160s Preparing to unpack .../80-r-cran-testthat_3.2.1.1-1_arm64.deb ...
160s Unpacking r-cran-testthat (3.2.1.1-1) ...
161s Selecting previously unselected package autopkgtest-satdep.
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161s Unpacking autopkgtest-satdep (0) ...
162s Setting up libpixman-1-0:arm64 (0.42.2-1build1) ...
162s Setting up libpaper1:arm64 (1.1.29build1) ...
163s 
163s Creating config file /etc/papersize with new version
164s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
167s Regenerating fonts cache... done.
167s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
167s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
167s Setting up libxcb-render0:arm64 (1.17.0-2) ...
167s Setting up unzip (6.0-28ubuntu5) ...
167s Setting up x11-common (1:7.7+23ubuntu3) ...
169s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
169s Setting up libpaper-utils (1.1.29build1) ...
169s Setting up libcairo2:arm64 (1.18.0-3build1) ...
169s Setting up zip (3.0-13build1) ...
169s Setting up libblas3:arm64 (3.12.0-3build1) ...
169s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
169s Setting up gcc-13-base:arm64 (13.3.0-3ubuntu1) ...
169s Setting up libatomic1:arm64 (14.1.0-5ubuntu1) ...
169s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ...
169s Setting up libgfortran5:arm64 (14.1.0-5ubuntu1) ...
169s Setting up libubsan1:arm64 (14.1.0-5ubuntu1) ...
169s Setting up libhwasan0:arm64 (14.1.0-5ubuntu1) ...
169s Setting up libasan8:arm64 (14.1.0-5ubuntu1) ...
169s Setting up libthai-data (0.1.29-2build1) ...
169s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
169s Setting up libtsan2:arm64 (14.1.0-5ubuntu1) ...
169s Setting up xdg-utils (1.2.1-0ubuntu1) ...
169s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
169s Setting up liblsan0:arm64 (14.1.0-5ubuntu1) ...
169s Setting up libitm1:arm64 (14.1.0-5ubuntu1) ...
169s Setting up libice6:arm64 (2:1.0.10-1build3) ...
169s Setting up liblapack3:arm64 (3.12.0-3build1) ...
169s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
169s Setting up libxft2:arm64 (2.3.6-1build1) ...
169s Setting up libtk8.6:arm64 (8.6.14-1build1) ...
169s Setting up libthai0:arm64 (0.1.29-2build1) ...
169s Setting up libgcc-13-dev:arm64 (13.3.0-3ubuntu1) ...
169s Setting up libsm6:arm64 (2:1.2.3-1build3) ...
169s Setting up libstdc++-13-dev:arm64 (13.3.0-3ubuntu1) ...
169s Setting up libboost1.83-dev:arm64 (1.83.0-3ubuntu1) ...
169s Setting up libpango-1.0-0:arm64 (1.54.0+ds-1) ...
169s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
169s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ...
169s Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ...
169s Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ...
169s Setting up r-base-core (4.4.1-1) ...
169s 
169s Creating config file /etc/R/Renviron with new version
170s Setting up r-cran-crayon (1.5.2-1) ...
170s Setting up r-cran-ps (1.7.6-1) ...
170s Setting up r-cran-remotes (2.5.0+dfsg-1) ...
170s Setting up r-cran-r6 (2.5.1-1) ...
170s Setting up r-cran-pkgkitten (0.2.3-1) ...
170s Setting up r-cran-magrittr (2.0.3-1) ...
170s Setting up r-cran-littler (0.3.20-1) ...
170s Setting up r-cran-bh (1.84.0-1) ...
170s Setting up r-cran-fs (1.6.4+dfsg-1) ...
170s Setting up r-cran-rcpp (1.0.12-1) ...
170s Setting up r-cran-brio (1.1.5-1) ...
170s Setting up r-cran-diffobj (0.3.5-1) ...
170s Setting up r-cran-bigmemory.sri (0.1.8-1) ...
170s Setting up r-cran-rlang (1.1.4-1) ...
170s Setting up littler (0.3.20-1) ...
170s Setting up r-cran-uuid (1.2-0-1) ...
170s Setting up r-cran-withr (2.5.0-1) ...
170s Setting up r-cran-processx (3.8.4-1) ...
170s Setting up r-cran-praise (1.0.0-4build1) ...
170s Setting up r-cran-digest (0.6.36-1) ...
170s Setting up r-cran-evaluate (0.24.0-1) ...
170s Setting up r-cran-bigmemory (4.6.4-1) ...
170s Setting up r-cran-fansi (1.0.5-1) ...
170s Setting up r-cran-glue (1.7.0-1) ...
170s Setting up r-cran-cli (3.6.2-1) ...
170s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
170s Setting up r-cran-rprojroot (2.0.4-1) ...
170s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
170s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
170s Setting up r-cran-utf8 (1.2.4-1) ...
170s Setting up r-cran-vctrs (0.6.5-1) ...
170s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
170s Setting up r-cran-callr (3.7.6-1) ...
170s Setting up r-cran-desc (1.4.3-1) ...
170s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
170s Setting up r-cran-pkgbuild (1.4.4-1) ...
170s Setting up r-cran-pkgload (1.4.0-1) ...
170s Setting up r-cran-rematch2 (2.1.2-2build1) ...
170s Setting up r-cran-waldo (0.5.2-1build1) ...
170s Setting up r-cran-testthat (3.2.1.1-1) ...
170s Setting up autopkgtest-satdep (0) ...
170s Processing triggers for man-db (2.12.1-2) ...
171s Processing triggers for install-info (7.1-3build2) ...
171s Processing triggers for libc-bin (2.39-0ubuntu9) ...
181s (Reading database ... 103079 files and directories currently installed.)
181s Removing autopkgtest-satdep (0) ...
183s autopkgtest [16:14:29]: test run-unit-test: [-----------------------
184s BEGIN TEST testthat.R
185s 
185s R version 4.4.1 (2024-06-14) -- "Race for Your Life"
185s Copyright (C) 2024 The R Foundation for Statistical Computing
185s Platform: aarch64-unknown-linux-gnu
185s 
185s R is free software and comes with ABSOLUTELY NO WARRANTY.
185s You are welcome to redistribute it under certain conditions.
185s Type 'license()' or 'licence()' for distribution details.
185s 
185s R is a collaborative project with many contributors.
185s Type 'contributors()' for more information and
185s 'citation()' on how to cite R or R packages in publications.
185s 
185s Type 'demo()' for some demos, 'help()' for on-line help, or
185s 'help.start()' for an HTML browser interface to help.
185s Type 'q()' to quit R.
185s 
186s > library(testthat)
186s > library(bigmemory)
187s > 
187s > test_check("bigmemory")
190s [ FAIL 1 | WARN 0 | SKIP 7 | PASS 189 ]
190s 
190s ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
190s • empty test (7): 'test_assignment.R:175:1', 'test_assignment.R:179:1',
190s   'test_assignment.R:183:1', 'test_assignment.R:187:1',
190s   'test_assignment.R:191:1', 'test_matrix_manips.R:3:1', 'test_mwhich.R:38:1'
190s 
190s ══ Failed tests ════════════════════════════════════════════════════════════════
190s ── Failure ('test_raw.R:31:3'): Making sure the 'char' matrix behaves like signed byte ──
190s mchar[1:3, 1] not equal to c(40, -123, NA).
190s 2/3 mismatches (average diff: NaN)
190s [2]  NA - -123 == NA
190s [3] 190 -   NA == NA
190s 
190s [ FAIL 1 | WARN 0 | SKIP 7 | PASS 189 ]
190s Error: Test failures
190s Execution halted
191s autopkgtest [16:14:37]: test run-unit-test: -----------------------]
192s run-unit-test        FAIL non-zero exit status 1
192s autopkgtest [16:14:38]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
194s autopkgtest [16:14:40]: test pkg-r-autopkgtest: preparing testbed
196s Reading package lists...
196s Building dependency tree...
196s Reading state information...
196s Starting pkgProblemResolver with broken count: 0
196s Starting 2 pkgProblemResolver with broken count: 0
196s Done
197s The following additional packages will be installed:
197s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
197s   dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
197s   gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
197s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
197s   libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
197s   libgfortran-14-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev
197s   libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0
197s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev
197s   libreadline-dev libstdc++-14-dev libtirpc-dev pkg-r-autopkgtest pkgconf
197s   pkgconf-bin r-base-dev zlib1g-dev
197s Suggested packages:
197s   cpp-doc gcc-14-locales cpp-14-doc debtags gcc-14-doc gcc-multilib
197s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
197s   gdb-aarch64-linux-gnu gfortran-doc gfortran-14-doc libcoarrays-dev
197s   liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-14-doc
197s   texlive-base texlive-latex-base texlive-plain-generic
197s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
197s   texlive-latex-recommended texlive-latex-extra texinfo
197s Recommended packages:
197s   bzip2-doc libpng-tools
197s The following NEW packages will be installed:
197s   autopkgtest-satdep build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu
197s   cpp-aarch64-linux-gnu dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu
197s   g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
197s   gcc-aarch64-linux-gnu gfortran gfortran-14 gfortran-14-aarch64-linux-gnu
197s   gfortran-aarch64-linux-gnu icu-devtools libblas-dev libbz2-dev libcc1-0
197s   libdeflate-dev libgcc-14-dev libgfortran-14-dev libicu-dev libisl23
197s   libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev
197s   libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev
197s   libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev
197s   libtirpc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev
197s 0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded.
197s Need to get 82.1 MB/82.1 MB of archives.
197s After this operation, 297 MB of additional disk space will be used.
197s Get:1 /tmp/autopkgtest.bzKRoH/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B]
198s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libisl23 arm64 0.26-3build1 [669 kB]
198s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libmpc3 arm64 1.3.1-1build1 [56.4 kB]
198s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-14-aarch64-linux-gnu arm64 14.1.0-5ubuntu1 [10.6 MB]
198s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-14 arm64 14.1.0-5ubuntu1 [1030 B]
198s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
198s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
198s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 libcc1-0 arm64 14.1.0-5ubuntu1 [49.6 kB]
198s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-14-dev arm64 14.1.0-5ubuntu1 [2596 kB]
198s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-14-aarch64-linux-gnu arm64 14.1.0-5ubuntu1 [20.9 MB]
199s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-14 arm64 14.1.0-5ubuntu1 [506 kB]
199s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
199s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
199s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++-14-dev arm64 14.1.0-5ubuntu1 [2468 kB]
199s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-14-aarch64-linux-gnu arm64 14.1.0-5ubuntu1 [12.1 MB]
199s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-14 arm64 14.1.0-5ubuntu1 [18.0 kB]
199s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
199s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
199s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
199s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
199s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran-14-dev arm64 14.1.0-5ubuntu1 [498 kB]
199s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.1.0-5ubuntu1 [11.4 MB]
200s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran-14 arm64 14.1.0-5ubuntu1 [10.6 kB]
200s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B]
200s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B]
200s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 icu-devtools arm64 74.2-1ubuntu3 [209 kB]
200s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas-dev arm64 3.12.0-3build1 [111 kB]
200s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 libbz2-dev arm64 1.0.8-5.1 [35.8 kB]
200s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 libdeflate-dev arm64 1.20-1 [53.2 kB]
200s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 libicu-dev arm64 74.2-1ubuntu3 [11.9 MB]
200s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB]
200s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
200s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
200s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack-dev arm64 3.12.0-3build1 [4293 kB]
200s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 libncurses-dev arm64 6.5-2 [385 kB]
200s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu2 [196 kB]
200s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu2 [184 kB]
200s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu2 [6642 B]
200s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-dev arm64 10.42-4ubuntu2 [680 kB]
200s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 libpkgconf3 arm64 1.8.1-3 [31.2 kB]
200s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB]
200s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 libpng-dev arm64 1.6.43-5build1 [266 kB]
200s Get:43 http://ftpmaster.internal/ubuntu oracular/main arm64 libreadline-dev arm64 8.2-4build1 [177 kB]
200s Get:44 http://ftpmaster.internal/ubuntu oracular/main arm64 liblzma-dev arm64 5.6.2-2 [179 kB]
200s Get:45 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf-bin arm64 1.8.1-3 [20.7 kB]
200s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf arm64 1.8.1-3 [16.7 kB]
200s Get:47 http://ftpmaster.internal/ubuntu oracular/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
200s Get:48 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-base-dev all 4.4.1-1 [4338 B]
200s Get:49 http://ftpmaster.internal/ubuntu oracular/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
203s Fetched 82.1 MB in 3s (27.8 MB/s)
203s Selecting previously unselected package libisl23:arm64.
203s (Reading database ... 
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203s Preparing to unpack .../00-libisl23_0.26-3build1_arm64.deb ...
203s Unpacking libisl23:arm64 (0.26-3build1) ...
203s Selecting previously unselected package libmpc3:arm64.
205s Preparing to unpack .../01-libmpc3_1.3.1-1build1_arm64.deb ...
205s Unpacking libmpc3:arm64 (1.3.1-1build1) ...
205s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
206s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.1.0-5ubuntu1_arm64.deb ...
206s Unpacking cpp-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ...
206s Selecting previously unselected package cpp-14.
207s Preparing to unpack .../03-cpp-14_14.1.0-5ubuntu1_arm64.deb ...
207s Unpacking cpp-14 (14.1.0-5ubuntu1) ...
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209s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
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210s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ...
210s Unpacking cpp (4:14.1.0-2ubuntu1) ...
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212s Preparing to unpack .../06-libcc1-0_14.1.0-5ubuntu1_arm64.deb ...
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213s Selecting previously unselected package libgcc-14-dev:arm64.
214s Preparing to unpack .../07-libgcc-14-dev_14.1.0-5ubuntu1_arm64.deb ...
214s Unpacking libgcc-14-dev:arm64 (14.1.0-5ubuntu1) ...
215s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
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220s Unpacking gcc-14 (14.1.0-5ubuntu1) ...
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221s Preparing to unpack .../10-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
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237s Selecting previously unselected package libpng-dev:arm64.
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238s Selecting previously unselected package libreadline-dev:arm64.
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239s Selecting previously unselected package liblzma-dev:arm64.
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241s Selecting previously unselected package pkgconf-bin.
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244s Selecting previously unselected package libtirpc-dev:arm64.
244s Preparing to unpack .../45-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ...
244s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
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246s Preparing to unpack .../46-r-base-dev_4.4.1-1_all.deb ...
246s Unpacking r-base-dev (4.4.1-1) ...
246s Selecting previously unselected package pkg-r-autopkgtest.
247s Preparing to unpack .../47-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
247s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
248s Selecting previously unselected package autopkgtest-satdep.
248s Preparing to unpack .../48-2-autopkgtest-satdep.deb ...
248s Unpacking autopkgtest-satdep (0) ...
249s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ...
249s Setting up libncurses-dev:arm64 (6.5-2) ...
249s Setting up libreadline-dev:arm64 (8.2-4build1) ...
249s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu2) ...
249s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu2) ...
249s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
249s Setting up libpkgconf3:arm64 (1.8.1-3) ...
249s Setting up libmpc3:arm64 (1.3.1-1build1) ...
249s Setting up icu-devtools (74.2-1ubuntu3) ...
249s Setting up pkgconf-bin (1.8.1-3) ...
249s Setting up liblzma-dev:arm64 (5.6.2-2) ...
249s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ...
249s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu2) ...
249s Setting up libgcc-14-dev:arm64 (14.1.0-5ubuntu1) ...
249s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
249s Setting up libisl23:arm64 (0.26-3build1) ...
249s Setting up libdeflate-dev:arm64 (1.20-1) ...
249s Setting up libstdc++-14-dev:arm64 (14.1.0-5ubuntu1) ...
249s Setting up libicu-dev:arm64 (74.2-1ubuntu3) ...
249s Setting up libcc1-0:arm64 (14.1.0-5ubuntu1) ...
249s Setting up libblas-dev:arm64 (3.12.0-3build1) ...
249s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
249s Setting up dctrl-tools (2.24-3build3) ...
249s Setting up libbz2-dev:arm64 (1.0.8-5.1) ...
249s Setting up libgfortran-14-dev:arm64 (14.1.0-5ubuntu1) ...
249s Setting up libpcre2-dev:arm64 (10.42-4ubuntu2) ...
249s Setting up libpng-dev:arm64 (1.6.43-5build1) ...
249s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
249s Setting up pkgconf:arm64 (1.8.1-3) ...
249s Setting up liblapack-dev:arm64 (3.12.0-3build1) ...
249s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
249s Setting up cpp-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ...
249s Setting up gcc-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ...
249s Setting up g++-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ...
249s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
249s Setting up cpp-14 (14.1.0-5ubuntu1) ...
249s Setting up cpp (4:14.1.0-2ubuntu1) ...
249s Setting up gfortran-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ...
249s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
249s Setting up gcc-14 (14.1.0-5ubuntu1) ...
249s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
249s Setting up gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
249s Setting up g++-14 (14.1.0-5ubuntu1) ...
249s Setting up gfortran-14 (14.1.0-5ubuntu1) ...
249s Setting up gcc (4:14.1.0-2ubuntu1) ...
249s Setting up g++ (4:14.1.0-2ubuntu1) ...
249s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
249s Setting up build-essential (12.10ubuntu1) ...
249s Setting up gfortran (4:14.1.0-2ubuntu1) ...
249s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
249s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
249s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
249s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
249s Setting up r-base-dev (4.4.1-1) ...
249s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
249s Setting up autopkgtest-satdep (0) ...
249s Processing triggers for man-db (2.12.1-2) ...
251s Processing triggers for install-info (7.1-3build2) ...
251s Processing triggers for libc-bin (2.39-0ubuntu9) ...
257s (Reading database ... 105025 files and directories currently installed.)
257s Removing autopkgtest-satdep (0) ...
258s autopkgtest [16:15:44]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
258s autopkgtest [16:15:44]: test pkg-r-autopkgtest: [-----------------------
259s Test: Try to load the R library bigmemory
260s 
260s R version 4.4.1 (2024-06-14) -- "Race for Your Life"
260s Copyright (C) 2024 The R Foundation for Statistical Computing
260s Platform: aarch64-unknown-linux-gnu
260s 
260s R is free software and comes with ABSOLUTELY NO WARRANTY.
260s You are welcome to redistribute it under certain conditions.
260s Type 'license()' or 'licence()' for distribution details.
260s 
260s R is a collaborative project with many contributors.
260s Type 'contributors()' for more information and
260s 'citation()' on how to cite R or R packages in publications.
260s 
260s Type 'demo()' for some demos, 'help()' for on-line help, or
260s 'help.start()' for an HTML browser interface to help.
260s Type 'q()' to quit R.
260s 
261s > library('bigmemory')
261s > 
261s > 
261s Other tests are currently unsupported!
261s They will be progressively added.
262s autopkgtest [16:15:48]: test pkg-r-autopkgtest: -----------------------]
263s autopkgtest [16:15:49]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
263s pkg-r-autopkgtest    PASS
264s autopkgtest [16:15:50]: @@@@@@@@@@@@@@@@@@@@ summary
264s run-unit-test        FAIL non-zero exit status 1
264s pkg-r-autopkgtest    PASS
276s nova [W] Skipping flock in bos03-arm64
276s Creating nova instance adt-oracular-arm64-r-cran-bigmemory-20240726-161126-juju-7f2275-prod-proposed-migration-environment-3-847f70ee-2758-4d22-908f-ae7906a54243 from image adt/ubuntu-oracular-arm64-server-20240726.img (UUID 33caccb7-bc3b-4ecc-9e17-59d67995dc9e)...