0s autopkgtest [10:27:48]: starting date and time: 2024-06-16 10:27:48+0000
  0s autopkgtest [10:27:48]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod'
  0s autopkgtest [10:27:48]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q8m7c5dv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-bigmemory --apt-upgrade r-cran-bigmemory --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-bigmemory/4.6.4-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-13.secgroup --name adt-oracular-arm64-r-cran-bigmemory-20240616-102748-juju-7f2275-prod-proposed-migration-environment-3-0c3c68ad-886e-4580-93fd-afdc39790303 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
1578s autopkgtest [10:54:06]: testbed dpkg architecture: arm64
1578s autopkgtest [10:54:06]: testbed apt version: 2.9.3
1578s autopkgtest [10:54:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup
1579s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB]
1580s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B]
1580s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
1580s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [36.1 kB]
1580s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [389 kB]
1580s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [55.3 kB]
1580s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [33.3 kB]
1580s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [312 kB]
1580s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8312 B]
1581s Fetched 955 kB in 2s (567 kB/s)
1581s Reading package lists...
1586s Reading package lists...
1586s Building dependency tree...
1586s Reading state information...
1587s Calculating upgrade...
1587s The following packages will be upgraded:
1587s   apt apt-utils dracut-install libapt-pkg6.0t64 libc-bin libc-dev-bin
1587s   libc-devtools libc6 libc6-dev libldap-common libldap2 libnss3 locales
1587s   python3-certifi ubuntu-pro-client ubuntu-pro-client-l10n
1587s 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1587s Need to get 13.8 MB of archives.
1587s After this operation, 9216 B of additional disk space will be used.
1587s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 libc-devtools arm64 2.39-0ubuntu9 [27.8 kB]
1587s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libc6-dev arm64 2.39-0ubuntu9 [1595 kB]
1588s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libc-dev-bin arm64 2.39-0ubuntu9 [19.7 kB]
1588s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libc6 arm64 2.39-0ubuntu9 [2776 kB]
1588s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libc-bin arm64 2.39-0ubuntu9 [591 kB]
1588s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libapt-pkg6.0t64 arm64 2.9.5 [967 kB]
1588s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 apt arm64 2.9.5 [1362 kB]
1588s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 apt-utils arm64 2.9.5 [211 kB]
1588s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 locales all 2.39-0ubuntu9 [4235 kB]
1588s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 ubuntu-pro-client-l10n arm64 32.3.1 [19.4 kB]
1588s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 ubuntu-pro-client arm64 32.3.1 [228 kB]
1588s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 dracut-install arm64 102-3ubuntu2 [32.4 kB]
1588s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 libldap-common all 2.6.7+dfsg-1~exp1ubuntu9 [31.5 kB]
1588s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libldap2 arm64 2.6.7+dfsg-1~exp1ubuntu9 [193 kB]
1588s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libnss3 arm64 2:3.101-1 [1361 kB]
1588s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-certifi all 2024.6.2-1 [160 kB]
1589s Preconfiguring packages ...
1589s Fetched 13.8 MB in 1s (14.5 MB/s)
1590s (Reading database ... 
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(Reading database ... 78264 files and directories currently installed.)
1590s Preparing to unpack .../libc-devtools_2.39-0ubuntu9_arm64.deb ...
1590s Unpacking libc-devtools (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ...
1590s Preparing to unpack .../libc6-dev_2.39-0ubuntu9_arm64.deb ...
1590s Unpacking libc6-dev:arm64 (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ...
1590s Preparing to unpack .../libc-dev-bin_2.39-0ubuntu9_arm64.deb ...
1590s Unpacking libc-dev-bin (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ...
1590s Preparing to unpack .../libc6_2.39-0ubuntu9_arm64.deb ...
1591s Unpacking libc6:arm64 (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ...
1591s Setting up libc6:arm64 (2.39-0ubuntu9) ...
1592s (Reading database ... 
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(Reading database ... 78264 files and directories currently installed.)
1592s Preparing to unpack .../libc-bin_2.39-0ubuntu9_arm64.deb ...
1592s Unpacking libc-bin (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ...
1592s Setting up libc-bin (2.39-0ubuntu9) ...
1592s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 78264 files and directories currently installed.)
1592s Preparing to unpack .../libapt-pkg6.0t64_2.9.5_arm64.deb ...
1592s Unpacking libapt-pkg6.0t64:arm64 (2.9.5) over (2.9.3) ...
1593s Setting up libapt-pkg6.0t64:arm64 (2.9.5) ...
1593s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78264 files and directories currently installed.)
1593s Preparing to unpack .../archives/apt_2.9.5_arm64.deb ...
1593s Unpacking apt (2.9.5) over (2.9.3) ...
1594s Setting up apt (2.9.5) ...
1596s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 78264 files and directories currently installed.)
1596s Preparing to unpack .../0-apt-utils_2.9.5_arm64.deb ...
1596s Unpacking apt-utils (2.9.5) over (2.9.3) ...
1596s Preparing to unpack .../1-locales_2.39-0ubuntu9_all.deb ...
1596s Unpacking locales (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ...
1597s Preparing to unpack .../2-ubuntu-pro-client-l10n_32.3.1_arm64.deb ...
1597s Unpacking ubuntu-pro-client-l10n (32.3.1) over (32.3) ...
1598s Preparing to unpack .../3-ubuntu-pro-client_32.3.1_arm64.deb ...
1598s Unpacking ubuntu-pro-client (32.3.1) over (32.3) ...
1599s Preparing to unpack .../4-dracut-install_102-3ubuntu2_arm64.deb ...
1599s Unpacking dracut-install (102-3ubuntu2) over (102-3ubuntu1) ...
1601s Preparing to unpack .../5-libldap-common_2.6.7+dfsg-1~exp1ubuntu9_all.deb ...
1601s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu9) over (2.6.7+dfsg-1~exp1ubuntu8) ...
1603s Preparing to unpack .../6-libldap2_2.6.7+dfsg-1~exp1ubuntu9_arm64.deb ...
1603s Unpacking libldap2:arm64 (2.6.7+dfsg-1~exp1ubuntu9) over (2.6.7+dfsg-1~exp1ubuntu8) ...
1604s Preparing to unpack .../7-libnss3_2%3a3.101-1_arm64.deb ...
1604s Unpacking libnss3:arm64 (2:3.101-1) over (2:3.100-1) ...
1604s Preparing to unpack .../8-python3-certifi_2024.6.2-1_all.deb ...
1605s Unpacking python3-certifi (2024.6.2-1) over (2023.11.17-1) ...
1605s Setting up apt-utils (2.9.5) ...
1605s Setting up libnss3:arm64 (2:3.101-1) ...
1605s Setting up locales (2.39-0ubuntu9) ...
1609s Generating locales (this might take a while)...
1615s   en_US.UTF-8... done
1615s Generation complete.
1615s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu9) ...
1615s Setting up python3-certifi (2024.6.2-1) ...
1616s Setting up dracut-install (102-3ubuntu2) ...
1616s Setting up libc-dev-bin (2.39-0ubuntu9) ...
1616s Setting up ubuntu-pro-client (32.3.1) ...
1616s Installing new version of config file /etc/apparmor.d/ubuntu_pro_esm_cache ...
1620s Setting up libldap2:arm64 (2.6.7+dfsg-1~exp1ubuntu9) ...
1620s Setting up libc-devtools (2.39-0ubuntu9) ...
1620s Setting up ubuntu-pro-client-l10n (32.3.1) ...
1620s Setting up libc6-dev:arm64 (2.39-0ubuntu9) ...
1620s Processing triggers for man-db (2.12.1-2) ...
1622s Processing triggers for libc-bin (2.39-0ubuntu9) ...
1625s Reading package lists...
1626s Building dependency tree...
1626s Reading state information...
1629s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1631s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease
1631s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease
1631s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease
1631s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
1637s Reading package lists...
1637s Reading package lists...
1637s Building dependency tree...
1637s Reading state information...
1638s Calculating upgrade...
1638s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1638s Reading package lists...
1639s Building dependency tree...
1639s Reading state information...
1639s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1640s autopkgtest [10:55:08]: rebooting testbed after setup commands that affected boot
1645s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
1678s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
1711s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
1744s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
1754s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
1773s autopkgtest [10:57:21]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024
1790s autopkgtest [10:57:38]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bigmemory
1798s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe r-cran-bigmemory 4.6.4-1 (dsc) [2219 B]
1798s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe r-cran-bigmemory 4.6.4-1 (tar) [72.3 kB]
1798s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe r-cran-bigmemory 4.6.4-1 (diff) [3096 B]
1799s gpgv: Signature made Wed Jan 17 13:08:49 2024 UTC
1799s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
1799s gpgv:                issuer "tille@debian.org"
1799s gpgv: Can't check signature: No public key
1799s dpkg-source: warning: cannot verify inline signature for ./r-cran-bigmemory_4.6.4-1.dsc: no acceptable signature found
1800s autopkgtest [10:57:48]: testing package r-cran-bigmemory version 4.6.4-1
1800s autopkgtest [10:57:48]: build not needed
1801s autopkgtest [10:57:49]: test run-unit-test: preparing testbed
1803s Reading package lists...
1804s Building dependency tree...
1804s Reading state information...
1805s Starting pkgProblemResolver with broken count: 0
1805s Starting 2 pkgProblemResolver with broken count: 0
1805s Done
1806s The following additional packages will be installed:
1806s   fontconfig libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev
1806s   libcairo2 libdatrie1 libgcc-13-dev libgfortran5 libgomp1 libgraphite2-3
1806s   libharfbuzz0b libhwasan0 libice6 libitm1 liblapack3 liblsan0 libpango-1.0-0
1806s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
1806s   libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtk8.6 libtsan2
1806s   libubsan1 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
1806s   littler r-base-core r-cran-bh r-cran-bigmemory r-cran-bigmemory.sri
1806s   r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
1806s   r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
1806s   r-cran-jsonlite r-cran-lifecycle r-cran-littler r-cran-magrittr
1806s   r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
1806s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp
1806s   r-cran-rematch2 r-cran-remotes r-cran-rlang r-cran-rprojroot r-cran-testthat
1806s   r-cran-tibble r-cran-utf8 r-cran-uuid r-cran-vctrs r-cran-waldo r-cran-withr
1806s   unzip x11-common xdg-utils zip
1806s Suggested packages:
1806s   libboost-doc libboost1.83-doc libboost-atomic1.83-dev
1806s   libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
1806s   libboost-contract1.83-dev libboost-coroutine1.83-dev
1806s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
1806s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
1806s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
1806s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
1806s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
1806s   libboost-numpy1.83-dev libboost-program-options1.83-dev
1806s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
1806s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
1806s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
1806s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
1806s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
1806s   libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib
1806s   r-base-html r-cran-rstudioapi r-cran-knitr r-cran-rmarkdown r-cran-getopt
1806s   r-cran-covr r-cran-bit64 r-cran-dbi r-cran-dplyr r-cran-formattable
1806s   r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales
1806s   r-cran-stringi r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline
1806s   r-cran-bench r-cran-blob r-cran-here r-cran-hms r-cran-htmltools
1806s   r-cran-purrr r-cran-tidyr
1806s Recommended packages:
1806s   r-recommended r-base-dev r-doc-html r-cran-covr r-cran-mockery
1806s   r-cran-spelling r-cran-htmltools r-cran-htmlwidgets r-cran-knitr
1806s   r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-gh r-cran-ggplot2
1806s   r-cran-lattice r-cran-unitizer r-cran-dbi r-cran-dplyr r-cran-rsqlite
1806s   r-cran-httr r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse
1806s   r-cran-lubridate r-cran-cpp11 r-cran-bitops r-cran-mathjaxr r-cran-mockr
1806s   r-cran-codetools r-cran-curl r-cran-webfakes r-cran-pingr r-cran-brew
1806s   r-cran-git2r r-cran-usethis r-cran-shiny r-cran-xml2 r-cran-data.table
1806s   r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown
1806s   r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
1806s   x11-utils x11-xserver-utils
1807s The following NEW packages will be installed:
1807s   autopkgtest-satdep fontconfig libasan8 libatomic1 libblas3 libboost-dev
1807s   libboost1.83-dev libcairo2 libdatrie1 libgcc-13-dev libgfortran5 libgomp1
1807s   libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libitm1 liblapack3 liblsan0
1807s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
1807s   libpaper1 libpixman-1-0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data
1807s   libthai0 libtk8.6 libtsan2 libubsan1 libxcb-render0 libxcb-shm0 libxft2
1807s   libxrender1 libxss1 libxt6t64 littler r-base-core r-cran-bh r-cran-bigmemory
1807s   r-cran-bigmemory.sri r-cran-brio r-cran-callr r-cran-cli r-cran-crayon
1807s   r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fansi
1807s   r-cran-fs r-cran-glue r-cran-jsonlite r-cran-lifecycle r-cran-littler
1807s   r-cran-magrittr r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
1807s   r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps
1807s   r-cran-r6 r-cran-rcpp r-cran-rematch2 r-cran-remotes r-cran-rlang
1807s   r-cran-rprojroot r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-uuid
1807s   r-cran-vctrs r-cran-waldo r-cran-withr unzip x11-common xdg-utils zip
1807s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded.
1807s Need to get 77.0 MB/77.0 MB of archives.
1807s After this operation, 336 MB of additional disk space will be used.
1807s Get:1 /tmp/autopkgtest.kjK8Na/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B]
1807s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB]
1807s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libasan8 arm64 14.1.0-1ubuntu1 [2922 kB]
1808s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14.1.0-1ubuntu1 [11.4 kB]
1808s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB]
1808s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB]
1808s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libitm1 arm64 14.1.0-1ubuntu1 [27.9 kB]
1808s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 liblsan0 arm64 14.1.0-1ubuntu1 [1286 kB]
1808s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 libtsan2 arm64 14.1.0-1ubuntu1 [2692 kB]
1808s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 libubsan1 arm64 14.1.0-1ubuntu1 [1155 kB]
1808s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libhwasan0 arm64 14.1.0-1ubuntu1 [1604 kB]
1808s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-13-dev arm64 13.2.0-23ubuntu4 [2470 kB]
1808s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++-13-dev arm64 13.2.0-23ubuntu4 [2379 kB]
1808s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libboost1.83-dev arm64 1.83.0-3ubuntu1 [10.7 MB]
1810s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B]
1810s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB]
1810s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
1810s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
1810s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
1810s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 libcairo2 arm64 1.18.0-3build1 [555 kB]
1810s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
1810s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB]
1810s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2build1 [70.8 kB]
1810s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB]
1810s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
1810s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB]
1810s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB]
1810s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
1810s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
1810s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 libpango-1.0-0 arm64 1.54.0+ds-1 [230 kB]
1810s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-1 [41.7 kB]
1810s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-1 [27.2 kB]
1810s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB]
1810s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B]
1810s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB]
1810s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB]
1810s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
1810s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
1810s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB]
1810s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
1811s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 zip arm64 3.0-13build1 [171 kB]
1811s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 unzip arm64 6.0-28ubuntu5 [176 kB]
1811s Get:43 http://ftpmaster.internal/ubuntu oracular/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
1811s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-base-core arm64 4.4.1-1 [28.3 MB]
1811s Get:45 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-littler arm64 0.3.20-1 [96.4 kB]
1811s Get:46 http://ftpmaster.internal/ubuntu oracular/universe arm64 littler all 0.3.20-1 [2486 B]
1811s Get:47 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
1811s Get:48 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB]
1811s Get:49 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
1811s Get:50 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
1811s Get:51 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-uuid arm64 1.2-0-1 [47.9 kB]
1811s Get:52 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 r-cran-bigmemory arm64 4.6.4-1 [437 kB]
1811s Get:53 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
1811s Get:54 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB]
1811s Get:55 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
1811s Get:56 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB]
1811s Get:57 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
1811s Get:58 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
1811s Get:59 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
1811s Get:60 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
1811s Get:61 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
1811s Get:62 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-digest arm64 0.6.35-1 [195 kB]
1811s Get:63 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
1811s Get:64 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
1811s Get:65 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1build2 [228 kB]
1811s Get:66 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
1811s Get:67 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
1811s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rlang arm64 1.1.4-1 [1707 kB]
1812s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
1812s Get:70 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
1812s Get:71 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
1812s Get:72 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
1812s Get:73 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
1812s Get:74 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgbuild all 1.4.4-1 [212 kB]
1812s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
1812s Get:76 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB]
1812s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
1812s Get:78 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB]
1812s Get:79 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
1812s Get:80 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
1812s Get:81 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
1812s Get:82 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-remotes all 2.4.2.1+dfsg-2 [411 kB]
1812s Get:83 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB]
1812s Get:84 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB]
1816s Preconfiguring packages ...
1819s Fetched 77.0 MB in 5s (15.2 MB/s)
1819s Selecting previously unselected package fontconfig.
1819s (Reading database ... 
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(Reading database ... 78264 files and directories currently installed.)
1819s Preparing to unpack .../00-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ...
1819s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
1819s Selecting previously unselected package libasan8:arm64.
1820s Preparing to unpack .../01-libasan8_14.1.0-1ubuntu1_arm64.deb ...
1820s Unpacking libasan8:arm64 (14.1.0-1ubuntu1) ...
1820s Selecting previously unselected package libatomic1:arm64.
1820s Preparing to unpack .../02-libatomic1_14.1.0-1ubuntu1_arm64.deb ...
1820s Unpacking libatomic1:arm64 (14.1.0-1ubuntu1) ...
1820s Selecting previously unselected package libblas3:arm64.
1820s Preparing to unpack .../03-libblas3_3.12.0-3build1_arm64.deb ...
1820s Unpacking libblas3:arm64 (3.12.0-3build1) ...
1821s Selecting previously unselected package libgomp1:arm64.
1821s Preparing to unpack .../04-libgomp1_14.1.0-1ubuntu1_arm64.deb ...
1821s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ...
1821s Selecting previously unselected package libitm1:arm64.
1822s Preparing to unpack .../05-libitm1_14.1.0-1ubuntu1_arm64.deb ...
1822s Unpacking libitm1:arm64 (14.1.0-1ubuntu1) ...
1822s Selecting previously unselected package liblsan0:arm64.
1822s Preparing to unpack .../06-liblsan0_14.1.0-1ubuntu1_arm64.deb ...
1822s Unpacking liblsan0:arm64 (14.1.0-1ubuntu1) ...
1822s Selecting previously unselected package libtsan2:arm64.
1823s Preparing to unpack .../07-libtsan2_14.1.0-1ubuntu1_arm64.deb ...
1823s Unpacking libtsan2:arm64 (14.1.0-1ubuntu1) ...
1824s Selecting previously unselected package libubsan1:arm64.
1824s Preparing to unpack .../08-libubsan1_14.1.0-1ubuntu1_arm64.deb ...
1824s Unpacking libubsan1:arm64 (14.1.0-1ubuntu1) ...
1824s Selecting previously unselected package libhwasan0:arm64.
1826s Preparing to unpack .../09-libhwasan0_14.1.0-1ubuntu1_arm64.deb ...
1826s Unpacking libhwasan0:arm64 (14.1.0-1ubuntu1) ...
1826s Selecting previously unselected package libgcc-13-dev:arm64.
1826s Preparing to unpack .../10-libgcc-13-dev_13.2.0-23ubuntu4_arm64.deb ...
1826s Unpacking libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ...
1826s Selecting previously unselected package libstdc++-13-dev:arm64.
1828s Preparing to unpack .../11-libstdc++-13-dev_13.2.0-23ubuntu4_arm64.deb ...
1828s Unpacking libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ...
1829s Selecting previously unselected package libboost1.83-dev:arm64.
1832s Preparing to unpack .../12-libboost1.83-dev_1.83.0-3ubuntu1_arm64.deb ...
1833s Unpacking libboost1.83-dev:arm64 (1.83.0-3ubuntu1) ...
1841s Selecting previously unselected package libboost-dev:arm64.
1844s Preparing to unpack .../13-libboost-dev_1.83.0.1ubuntu2_arm64.deb ...
1844s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ...
1844s Selecting previously unselected package libpixman-1-0:arm64.
1851s Preparing to unpack .../14-libpixman-1-0_0.42.2-1build1_arm64.deb ...
1851s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ...
1852s Selecting previously unselected package libxcb-render0:arm64.
1854s Preparing to unpack .../15-libxcb-render0_1.17.0-2_arm64.deb ...
1854s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
1854s Selecting previously unselected package libxcb-shm0:arm64.
1855s Preparing to unpack .../16-libxcb-shm0_1.17.0-2_arm64.deb ...
1855s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
1855s Selecting previously unselected package libxrender1:arm64.
1855s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
1855s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
1855s Selecting previously unselected package libcairo2:arm64.
1855s Preparing to unpack .../18-libcairo2_1.18.0-3build1_arm64.deb ...
1855s Unpacking libcairo2:arm64 (1.18.0-3build1) ...
1855s Selecting previously unselected package libdatrie1:arm64.
1855s Preparing to unpack .../19-libdatrie1_0.2.13-3build1_arm64.deb ...
1855s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
1855s Selecting previously unselected package libgfortran5:arm64.
1856s Preparing to unpack .../20-libgfortran5_14.1.0-1ubuntu1_arm64.deb ...
1856s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ...
1856s Selecting previously unselected package libgraphite2-3:arm64.
1856s Preparing to unpack .../21-libgraphite2-3_1.3.14-2build1_arm64.deb ...
1856s Unpacking libgraphite2-3:arm64 (1.3.14-2build1) ...
1856s Selecting previously unselected package libharfbuzz0b:arm64.
1856s Preparing to unpack .../22-libharfbuzz0b_8.3.0-2build2_arm64.deb ...
1856s Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ...
1856s Selecting previously unselected package x11-common.
1856s Preparing to unpack .../23-x11-common_1%3a7.7+23ubuntu3_all.deb ...
1856s Unpacking x11-common (1:7.7+23ubuntu3) ...
1856s Selecting previously unselected package libice6:arm64.
1856s Preparing to unpack .../24-libice6_2%3a1.0.10-1build3_arm64.deb ...
1856s Unpacking libice6:arm64 (2:1.0.10-1build3) ...
1856s Selecting previously unselected package liblapack3:arm64.
1856s Preparing to unpack .../25-liblapack3_3.12.0-3build1_arm64.deb ...
1856s Unpacking liblapack3:arm64 (3.12.0-3build1) ...
1856s Selecting previously unselected package libthai-data.
1857s Preparing to unpack .../26-libthai-data_0.1.29-2build1_all.deb ...
1857s Unpacking libthai-data (0.1.29-2build1) ...
1857s Selecting previously unselected package libthai0:arm64.
1857s Preparing to unpack .../27-libthai0_0.1.29-2build1_arm64.deb ...
1857s Unpacking libthai0:arm64 (0.1.29-2build1) ...
1857s Selecting previously unselected package libpango-1.0-0:arm64.
1857s Preparing to unpack .../28-libpango-1.0-0_1.54.0+ds-1_arm64.deb ...
1857s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-1) ...
1857s Selecting previously unselected package libpangoft2-1.0-0:arm64.
1857s Preparing to unpack .../29-libpangoft2-1.0-0_1.54.0+ds-1_arm64.deb ...
1857s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ...
1857s Selecting previously unselected package libpangocairo-1.0-0:arm64.
1859s Preparing to unpack .../30-libpangocairo-1.0-0_1.54.0+ds-1_arm64.deb ...
1859s Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ...
1859s Selecting previously unselected package libpaper1:arm64.
1862s Preparing to unpack .../31-libpaper1_1.1.29build1_arm64.deb ...
1862s Unpacking libpaper1:arm64 (1.1.29build1) ...
1862s Selecting previously unselected package libpaper-utils.
1863s Preparing to unpack .../32-libpaper-utils_1.1.29build1_arm64.deb ...
1863s Unpacking libpaper-utils (1.1.29build1) ...
1864s Selecting previously unselected package libsm6:arm64.
1867s Preparing to unpack .../33-libsm6_2%3a1.2.3-1build3_arm64.deb ...
1867s Unpacking libsm6:arm64 (2:1.2.3-1build3) ...
1867s Selecting previously unselected package libtcl8.6:arm64.
1870s Preparing to unpack .../34-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ...
1870s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ...
1870s Selecting previously unselected package libxft2:arm64.
1871s Preparing to unpack .../35-libxft2_2.3.6-1build1_arm64.deb ...
1871s Unpacking libxft2:arm64 (2.3.6-1build1) ...
1871s Selecting previously unselected package libxss1:arm64.
1872s Preparing to unpack .../36-libxss1_1%3a1.2.3-1build3_arm64.deb ...
1872s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
1872s Selecting previously unselected package libtk8.6:arm64.
1873s Preparing to unpack .../37-libtk8.6_8.6.14-1build1_arm64.deb ...
1873s Unpacking libtk8.6:arm64 (8.6.14-1build1) ...
1873s Selecting previously unselected package libxt6t64:arm64.
1873s Preparing to unpack .../38-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ...
1873s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ...
1873s Selecting previously unselected package zip.
1873s Preparing to unpack .../39-zip_3.0-13build1_arm64.deb ...
1873s Unpacking zip (3.0-13build1) ...
1873s Selecting previously unselected package unzip.
1874s Preparing to unpack .../40-unzip_6.0-28ubuntu5_arm64.deb ...
1874s Unpacking unzip (6.0-28ubuntu5) ...
1874s Selecting previously unselected package xdg-utils.
1874s Preparing to unpack .../41-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
1874s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
1874s Selecting previously unselected package r-base-core.
1874s Preparing to unpack .../42-r-base-core_4.4.1-1_arm64.deb ...
1874s Unpacking r-base-core (4.4.1-1) ...
1875s Selecting previously unselected package r-cran-littler.
1875s Preparing to unpack .../43-r-cran-littler_0.3.20-1_arm64.deb ...
1875s Unpacking r-cran-littler (0.3.20-1) ...
1875s Selecting previously unselected package littler.
1876s Preparing to unpack .../44-littler_0.3.20-1_all.deb ...
1876s Unpacking littler (0.3.20-1) ...
1876s Selecting previously unselected package r-cran-bh.
1878s Preparing to unpack .../45-r-cran-bh_1.84.0-1_all.deb ...
1878s Unpacking r-cran-bh (1.84.0-1) ...
1878s Selecting previously unselected package r-cran-bigmemory.sri.
1879s Preparing to unpack .../46-r-cran-bigmemory.sri_0.1.8-1_all.deb ...
1879s Unpacking r-cran-bigmemory.sri (0.1.8-1) ...
1879s Selecting previously unselected package r-cran-pkgkitten.
1880s Preparing to unpack .../47-r-cran-pkgkitten_0.2.3-1_all.deb ...
1880s Unpacking r-cran-pkgkitten (0.2.3-1) ...
1880s Selecting previously unselected package r-cran-rcpp.
1885s Preparing to unpack .../48-r-cran-rcpp_1.0.12-1_arm64.deb ...
1885s Unpacking r-cran-rcpp (1.0.12-1) ...
1885s Selecting previously unselected package r-cran-uuid.
1888s Preparing to unpack .../49-r-cran-uuid_1.2-0-1_arm64.deb ...
1888s Unpacking r-cran-uuid (1.2-0-1) ...
1889s Selecting previously unselected package r-cran-bigmemory.
1891s Preparing to unpack .../50-r-cran-bigmemory_4.6.4-1_arm64.deb ...
1891s Unpacking r-cran-bigmemory (4.6.4-1) ...
1891s Selecting previously unselected package r-cran-brio.
1893s Preparing to unpack .../51-r-cran-brio_1.1.5-1_arm64.deb ...
1893s Unpacking r-cran-brio (1.1.5-1) ...
1894s Selecting previously unselected package r-cran-ps.
1895s Preparing to unpack .../52-r-cran-ps_1.7.6-1_arm64.deb ...
1895s Unpacking r-cran-ps (1.7.6-1) ...
1895s Selecting previously unselected package r-cran-r6.
1896s Preparing to unpack .../53-r-cran-r6_2.5.1-1_all.deb ...
1896s Unpacking r-cran-r6 (2.5.1-1) ...
1896s Selecting previously unselected package r-cran-processx.
1896s Preparing to unpack .../54-r-cran-processx_3.8.3-1_arm64.deb ...
1896s Unpacking r-cran-processx (3.8.3-1) ...
1896s Selecting previously unselected package r-cran-callr.
1897s Preparing to unpack .../55-r-cran-callr_3.7.6-1_all.deb ...
1897s Unpacking r-cran-callr (3.7.6-1) ...
1897s Selecting previously unselected package r-cran-cli.
1898s Preparing to unpack .../56-r-cran-cli_3.6.2-1_arm64.deb ...
1898s Unpacking r-cran-cli (3.6.2-1) ...
1898s Selecting previously unselected package r-cran-crayon.
1899s Preparing to unpack .../57-r-cran-crayon_1.5.2-1_all.deb ...
1899s Unpacking r-cran-crayon (1.5.2-1) ...
1900s Selecting previously unselected package r-cran-desc.
1901s Preparing to unpack .../58-r-cran-desc_1.4.3-1_all.deb ...
1901s Unpacking r-cran-desc (1.4.3-1) ...
1901s Selecting previously unselected package r-cran-diffobj.
1901s Preparing to unpack .../59-r-cran-diffobj_0.3.5-1_arm64.deb ...
1901s Unpacking r-cran-diffobj (0.3.5-1) ...
1901s Selecting previously unselected package r-cran-digest.
1902s Preparing to unpack .../60-r-cran-digest_0.6.35-1_arm64.deb ...
1902s Unpacking r-cran-digest (0.6.35-1) ...
1902s Selecting previously unselected package r-cran-evaluate.
1902s Preparing to unpack .../61-r-cran-evaluate_0.23-1_all.deb ...
1902s Unpacking r-cran-evaluate (0.23-1) ...
1903s Selecting previously unselected package r-cran-fansi.
1904s Preparing to unpack .../62-r-cran-fansi_1.0.5-1_arm64.deb ...
1904s Unpacking r-cran-fansi (1.0.5-1) ...
1904s Selecting previously unselected package r-cran-fs.
1904s Preparing to unpack .../63-r-cran-fs_1.6.3+dfsg-1build2_arm64.deb ...
1904s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ...
1904s Selecting previously unselected package r-cran-glue.
1904s Preparing to unpack .../64-r-cran-glue_1.7.0-1_arm64.deb ...
1904s Unpacking r-cran-glue (1.7.0-1) ...
1904s Selecting previously unselected package r-cran-jsonlite.
1904s Preparing to unpack .../65-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ...
1904s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
1904s Selecting previously unselected package r-cran-rlang.
1905s Preparing to unpack .../66-r-cran-rlang_1.1.4-1_arm64.deb ...
1905s Unpacking r-cran-rlang (1.1.4-1) ...
1905s Selecting previously unselected package r-cran-lifecycle.
1906s Preparing to unpack .../67-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
1906s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
1906s Selecting previously unselected package r-cran-magrittr.
1906s Preparing to unpack .../68-r-cran-magrittr_2.0.3-1_arm64.deb ...
1906s Unpacking r-cran-magrittr (2.0.3-1) ...
1906s Selecting previously unselected package r-cran-utf8.
1906s Preparing to unpack .../69-r-cran-utf8_1.2.4-1_arm64.deb ...
1906s Unpacking r-cran-utf8 (1.2.4-1) ...
1906s Selecting previously unselected package r-cran-vctrs.
1907s Preparing to unpack .../70-r-cran-vctrs_0.6.5-1_arm64.deb ...
1907s Unpacking r-cran-vctrs (0.6.5-1) ...
1907s Selecting previously unselected package r-cran-pillar.
1907s Preparing to unpack .../71-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
1907s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
1907s Selecting previously unselected package r-cran-pkgbuild.
1907s Preparing to unpack .../72-r-cran-pkgbuild_1.4.4-1_all.deb ...
1907s Unpacking r-cran-pkgbuild (1.4.4-1) ...
1907s Selecting previously unselected package r-cran-pkgconfig.
1908s Preparing to unpack .../73-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
1908s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
1908s Selecting previously unselected package r-cran-rprojroot.
1909s Preparing to unpack .../74-r-cran-rprojroot_2.0.4-1_all.deb ...
1909s Unpacking r-cran-rprojroot (2.0.4-1) ...
1909s Selecting previously unselected package r-cran-withr.
1910s Preparing to unpack .../75-r-cran-withr_2.5.0-1_all.deb ...
1910s Unpacking r-cran-withr (2.5.0-1) ...
1910s Selecting previously unselected package r-cran-pkgload.
1913s Preparing to unpack .../76-r-cran-pkgload_1.3.4-1_all.deb ...
1913s Unpacking r-cran-pkgload (1.3.4-1) ...
1914s Selecting previously unselected package r-cran-praise.
1915s Preparing to unpack .../77-r-cran-praise_1.0.0-4build1_all.deb ...
1915s Unpacking r-cran-praise (1.0.0-4build1) ...
1916s Selecting previously unselected package r-cran-tibble.
1918s Preparing to unpack .../78-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ...
1918s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
1918s Selecting previously unselected package r-cran-rematch2.
1918s Preparing to unpack .../79-r-cran-rematch2_2.1.2-2build1_all.deb ...
1918s Unpacking r-cran-rematch2 (2.1.2-2build1) ...
1918s Selecting previously unselected package r-cran-remotes.
1918s Preparing to unpack .../80-r-cran-remotes_2.4.2.1+dfsg-2_all.deb ...
1918s Unpacking r-cran-remotes (2.4.2.1+dfsg-2) ...
1918s Selecting previously unselected package r-cran-waldo.
1919s Preparing to unpack .../81-r-cran-waldo_0.5.2-1build1_all.deb ...
1919s Unpacking r-cran-waldo (0.5.2-1build1) ...
1919s Selecting previously unselected package r-cran-testthat.
1919s Preparing to unpack .../82-r-cran-testthat_3.2.1-1_arm64.deb ...
1919s Unpacking r-cran-testthat (3.2.1-1) ...
1919s Selecting previously unselected package autopkgtest-satdep.
1919s Preparing to unpack .../83-1-autopkgtest-satdep.deb ...
1919s Unpacking autopkgtest-satdep (0) ...
1920s Setting up libgraphite2-3:arm64 (1.3.14-2build1) ...
1920s Setting up libpixman-1-0:arm64 (0.42.2-1build1) ...
1920s Setting up libpaper1:arm64 (1.1.29build1) ...
1921s 
1921s Creating config file /etc/papersize with new version
1921s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
1923s Regenerating fonts cache... done.
1923s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
1923s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
1923s Setting up libxcb-render0:arm64 (1.17.0-2) ...
1923s Setting up unzip (6.0-28ubuntu5) ...
1923s Setting up x11-common (1:7.7+23ubuntu3) ...
1925s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
1925s Setting up libpaper-utils (1.1.29build1) ...
1925s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ...
1925s Setting up libcairo2:arm64 (1.18.0-3build1) ...
1925s Setting up zip (3.0-13build1) ...
1925s Setting up libblas3:arm64 (3.12.0-3build1) ...
1925s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
1925s Setting up libatomic1:arm64 (14.1.0-1ubuntu1) ...
1925s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ...
1925s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ...
1925s Setting up libubsan1:arm64 (14.1.0-1ubuntu1) ...
1925s Setting up libhwasan0:arm64 (14.1.0-1ubuntu1) ...
1925s Setting up libasan8:arm64 (14.1.0-1ubuntu1) ...
1925s Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ...
1925s Setting up libthai-data (0.1.29-2build1) ...
1925s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
1925s Setting up libtsan2:arm64 (14.1.0-1ubuntu1) ...
1925s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
1925s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
1925s Setting up liblsan0:arm64 (14.1.0-1ubuntu1) ...
1925s Setting up libitm1:arm64 (14.1.0-1ubuntu1) ...
1925s Setting up libice6:arm64 (2:1.0.10-1build3) ...
1925s Setting up liblapack3:arm64 (3.12.0-3build1) ...
1925s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
1925s Setting up libxft2:arm64 (2.3.6-1build1) ...
1925s Setting up libtk8.6:arm64 (8.6.14-1build1) ...
1925s Setting up libthai0:arm64 (0.1.29-2build1) ...
1925s Setting up libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ...
1925s Setting up libsm6:arm64 (2:1.2.3-1build3) ...
1925s Setting up libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ...
1925s Setting up libboost1.83-dev:arm64 (1.83.0-3ubuntu1) ...
1925s Setting up libpango-1.0-0:arm64 (1.54.0+ds-1) ...
1925s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
1925s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ...
1925s Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ...
1925s Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ...
1925s Setting up r-base-core (4.4.1-1) ...
1926s 
1926s Creating config file /etc/R/Renviron with new version
1926s Setting up r-cran-crayon (1.5.2-1) ...
1926s Setting up r-cran-ps (1.7.6-1) ...
1926s Setting up r-cran-remotes (2.4.2.1+dfsg-2) ...
1926s Setting up r-cran-r6 (2.5.1-1) ...
1926s Setting up r-cran-pkgkitten (0.2.3-1) ...
1926s Setting up r-cran-magrittr (2.0.3-1) ...
1926s Setting up r-cran-littler (0.3.20-1) ...
1926s Setting up r-cran-bh (1.84.0-1) ...
1926s Setting up r-cran-fs (1.6.3+dfsg-1build2) ...
1926s Setting up r-cran-rcpp (1.0.12-1) ...
1926s Setting up r-cran-brio (1.1.5-1) ...
1926s Setting up r-cran-diffobj (0.3.5-1) ...
1926s Setting up r-cran-bigmemory.sri (0.1.8-1) ...
1926s Setting up r-cran-rlang (1.1.4-1) ...
1926s Setting up littler (0.3.20-1) ...
1926s Setting up r-cran-uuid (1.2-0-1) ...
1926s Setting up r-cran-withr (2.5.0-1) ...
1926s Setting up r-cran-processx (3.8.3-1) ...
1926s Setting up r-cran-praise (1.0.0-4build1) ...
1926s Setting up r-cran-digest (0.6.35-1) ...
1926s Setting up r-cran-evaluate (0.23-1) ...
1926s Setting up r-cran-bigmemory (4.6.4-1) ...
1926s Setting up r-cran-fansi (1.0.5-1) ...
1926s Setting up r-cran-glue (1.7.0-1) ...
1926s Setting up r-cran-cli (3.6.2-1) ...
1926s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
1926s Setting up r-cran-rprojroot (2.0.4-1) ...
1926s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
1926s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
1926s Setting up r-cran-utf8 (1.2.4-1) ...
1926s Setting up r-cran-vctrs (0.6.5-1) ...
1926s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
1926s Setting up r-cran-callr (3.7.6-1) ...
1926s Setting up r-cran-desc (1.4.3-1) ...
1926s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
1926s Setting up r-cran-pkgbuild (1.4.4-1) ...
1926s Setting up r-cran-pkgload (1.3.4-1) ...
1926s Setting up r-cran-rematch2 (2.1.2-2build1) ...
1926s Setting up r-cran-waldo (0.5.2-1build1) ...
1926s Setting up r-cran-testthat (3.2.1-1) ...
1926s Setting up autopkgtest-satdep (0) ...
1926s Processing triggers for man-db (2.12.1-2) ...
1927s Processing triggers for install-info (7.1-3build2) ...
1928s Processing triggers for libc-bin (2.39-0ubuntu9) ...
1937s (Reading database ... 102739 files and directories currently installed.)
1937s Removing autopkgtest-satdep (0) ...
1938s autopkgtest [11:00:06]: test run-unit-test: [-----------------------
1939s BEGIN TEST testthat.R
1939s 
1939s R version 4.4.1 (2024-06-14) -- "Race for Your Life"
1939s Copyright (C) 2024 The R Foundation for Statistical Computing
1939s Platform: aarch64-unknown-linux-gnu
1939s 
1939s R is free software and comes with ABSOLUTELY NO WARRANTY.
1939s You are welcome to redistribute it under certain conditions.
1939s Type 'license()' or 'licence()' for distribution details.
1939s 
1939s R is a collaborative project with many contributors.
1939s Type 'contributors()' for more information and
1939s 'citation()' on how to cite R or R packages in publications.
1939s 
1939s Type 'demo()' for some demos, 'help()' for on-line help, or
1939s 'help.start()' for an HTML browser interface to help.
1939s Type 'q()' to quit R.
1939s 
1939s > library(testthat)
1940s > library(bigmemory)
1940s > 
1940s > test_check("bigmemory")
1943s [ FAIL 1 | WARN 0 | SKIP 7 | PASS 189 ]
1943s 
1943s ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
1943s • empty test (7): 'test_assignment.R:175:1', 'test_assignment.R:179:1',
1943s   'test_assignment.R:183:1', 'test_assignment.R:187:1',
1943s   'test_assignment.R:191:1', 'test_matrix_manips.R:3:1', 'test_mwhich.R:38:1'
1943s 
1943s ══ Failed tests ════════════════════════════════════════════════════════════════
1943s ── Failure ('test_raw.R:31:3'): Making sure the 'char' matrix behaves like signed byte ──
1943s mchar[1:3, 1] not equal to c(40, -123, NA).
1943s 2/3 mismatches (average diff: NaN)
1943s [2]  NA - -123 == NA
1943s [3] 190 -   NA == NA
1943s 
1943s [ FAIL 1 | WARN 0 | SKIP 7 | PASS 189 ]
1943s Error: Test failures
1943s Execution halted
1944s autopkgtest [11:00:12]: test run-unit-test: -----------------------]
1944s autopkgtest [11:00:12]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
1944s run-unit-test        FAIL non-zero exit status 1
1945s autopkgtest [11:00:13]: test pkg-r-autopkgtest: preparing testbed
1947s Reading package lists...
1947s Building dependency tree...
1947s Reading state information...
1947s Starting pkgProblemResolver with broken count: 0
1947s Starting 2 pkgProblemResolver with broken count: 0
1947s Done
1948s The following additional packages will be installed:
1948s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
1948s   dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
1948s   gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
1948s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
1948s   libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgfortran-13-dev libicu-dev
1948s   libisl23 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev
1948s   liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev
1948s   libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libtirpc-dev
1948s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev
1948s Suggested packages:
1948s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
1948s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
1948s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
1948s   liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc texlive-base
1948s   texlive-latex-base texlive-plain-generic texlive-fonts-recommended
1948s   texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
1948s   texlive-latex-extra texinfo
1948s Recommended packages:
1948s   bzip2-doc libpng-tools
1948s The following NEW packages will be installed:
1948s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
1948s   cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu
1948s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
1948s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
1948s   gfortran-aarch64-linux-gnu icu-devtools libblas-dev libbz2-dev libcc1-0
1948s   libdeflate-dev libgfortran-13-dev libicu-dev libisl23 libjpeg-dev
1948s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev libmpc3
1948s   libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
1948s   libpkgconf3 libpng-dev libreadline-dev libtirpc-dev pkg-r-autopkgtest
1948s   pkgconf pkgconf-bin r-base-dev zlib1g-dev
1948s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
1948s Need to get 74.9 MB/74.9 MB of archives.
1948s After this operation, 256 MB of additional disk space will be used.
1948s Get:1 /tmp/autopkgtest.kjK8Na/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B]
1948s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libisl23 arm64 0.26-3build1 [669 kB]
1949s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libmpc3 arm64 1.3.1-1build1 [56.4 kB]
1949s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [10.3 MB]
1949s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-13 arm64 13.2.0-23ubuntu4 [1032 B]
1949s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
1949s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
1949s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 libcc1-0 arm64 14.1.0-1ubuntu1 [49.4 kB]
1949s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [20.1 MB]
1950s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-13 arm64 13.2.0-23ubuntu4 [472 kB]
1950s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
1950s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
1950s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [11.7 MB]
1950s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-13 arm64 13.2.0-23ubuntu4 [14.5 kB]
1950s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
1950s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
1950s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
1950s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
1950s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran-13-dev arm64 13.2.0-23ubuntu4 [478 kB]
1950s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [10.8 MB]
1950s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran-13 arm64 13.2.0-23ubuntu4 [11.7 kB]
1950s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
1950s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
1950s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 icu-devtools arm64 74.2-1ubuntu3 [209 kB]
1950s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas-dev arm64 3.12.0-3build1 [111 kB]
1950s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 libbz2-dev arm64 1.0.8-5.1 [35.8 kB]
1950s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 libdeflate-dev arm64 1.20-1 [53.2 kB]
1950s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 libicu-dev arm64 74.2-1ubuntu3 [11.9 MB]
1950s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB]
1950s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
1950s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
1950s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack-dev arm64 3.12.0-3build1 [4293 kB]
1951s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 libncurses-dev arm64 6.5-2 [385 kB]
1951s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu2 [196 kB]
1951s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu2 [184 kB]
1951s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu2 [6642 B]
1951s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcre2-dev arm64 10.42-4ubuntu2 [680 kB]
1951s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 libpkgconf3 arm64 1.8.1-3 [31.2 kB]
1951s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB]
1951s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 libpng-dev arm64 1.6.43-5build1 [266 kB]
1951s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 libreadline-dev arm64 8.2-4build1 [177 kB]
1951s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 liblzma-dev arm64 5.6.1+really5.4.5-1 [178 kB]
1951s Get:43 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf-bin arm64 1.8.1-3 [20.7 kB]
1951s Get:44 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf arm64 1.8.1-3 [16.7 kB]
1951s Get:45 http://ftpmaster.internal/ubuntu oracular/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
1951s Get:46 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-base-dev all 4.4.1-1 [4338 B]
1951s Get:47 http://ftpmaster.internal/ubuntu oracular/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
1952s Fetched 74.9 MB in 3s (28.6 MB/s)
1952s Selecting previously unselected package libisl23:arm64.
1952s (Reading database ... 
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1952s Preparing to unpack .../00-libisl23_0.26-3build1_arm64.deb ...
1952s Unpacking libisl23:arm64 (0.26-3build1) ...
1952s Selecting previously unselected package libmpc3:arm64.
1952s Preparing to unpack .../01-libmpc3_1.3.1-1build1_arm64.deb ...
1952s Unpacking libmpc3:arm64 (1.3.1-1build1) ...
1953s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
1953s Preparing to unpack .../02-cpp-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ...
1953s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ...
1953s Selecting previously unselected package cpp-13.
1953s Preparing to unpack .../03-cpp-13_13.2.0-23ubuntu4_arm64.deb ...
1953s Unpacking cpp-13 (13.2.0-23ubuntu4) ...
1953s Selecting previously unselected package cpp-aarch64-linux-gnu.
1953s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
1953s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1954s Selecting previously unselected package cpp.
1954s Preparing to unpack .../05-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
1954s Unpacking cpp (4:13.2.0-7ubuntu1) ...
1954s Selecting previously unselected package libcc1-0:arm64.
1955s Preparing to unpack .../06-libcc1-0_14.1.0-1ubuntu1_arm64.deb ...
1955s Unpacking libcc1-0:arm64 (14.1.0-1ubuntu1) ...
1955s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
1955s Preparing to unpack .../07-gcc-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ...
1955s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ...
1955s Selecting previously unselected package gcc-13.
1956s Preparing to unpack .../08-gcc-13_13.2.0-23ubuntu4_arm64.deb ...
1956s Unpacking gcc-13 (13.2.0-23ubuntu4) ...
1956s Selecting previously unselected package gcc-aarch64-linux-gnu.
1956s Preparing to unpack .../09-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
1956s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1956s Selecting previously unselected package gcc.
1956s Preparing to unpack .../10-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
1956s Unpacking gcc (4:13.2.0-7ubuntu1) ...
1956s Selecting previously unselected package g++-13-aarch64-linux-gnu.
1956s Preparing to unpack .../11-g++-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ...
1956s Unpacking g++-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ...
1956s Selecting previously unselected package g++-13.
1956s Preparing to unpack .../12-g++-13_13.2.0-23ubuntu4_arm64.deb ...
1956s Unpacking g++-13 (13.2.0-23ubuntu4) ...
1956s Selecting previously unselected package g++-aarch64-linux-gnu.
1957s Preparing to unpack .../13-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
1957s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1957s Selecting previously unselected package g++.
1957s Preparing to unpack .../14-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
1957s Unpacking g++ (4:13.2.0-7ubuntu1) ...
1957s Selecting previously unselected package build-essential.
1958s Preparing to unpack .../15-build-essential_12.10ubuntu1_arm64.deb ...
1958s Unpacking build-essential (12.10ubuntu1) ...
1958s Selecting previously unselected package dctrl-tools.
1958s Preparing to unpack .../16-dctrl-tools_2.24-3build3_arm64.deb ...
1958s Unpacking dctrl-tools (2.24-3build3) ...
1958s Selecting previously unselected package libgfortran-13-dev:arm64.
1958s Preparing to unpack .../17-libgfortran-13-dev_13.2.0-23ubuntu4_arm64.deb ...
1958s Unpacking libgfortran-13-dev:arm64 (13.2.0-23ubuntu4) ...
1958s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
1958s Preparing to unpack .../18-gfortran-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ...
1958s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ...
1959s Selecting previously unselected package gfortran-13.
1959s Preparing to unpack .../19-gfortran-13_13.2.0-23ubuntu4_arm64.deb ...
1959s Unpacking gfortran-13 (13.2.0-23ubuntu4) ...
1959s Selecting previously unselected package gfortran-aarch64-linux-gnu.
1959s Preparing to unpack .../20-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
1959s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1959s Selecting previously unselected package gfortran.
1959s Preparing to unpack .../21-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
1959s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
1959s Selecting previously unselected package icu-devtools.
1959s Preparing to unpack .../22-icu-devtools_74.2-1ubuntu3_arm64.deb ...
1959s Unpacking icu-devtools (74.2-1ubuntu3) ...
1959s Selecting previously unselected package libblas-dev:arm64.
1959s Preparing to unpack .../23-libblas-dev_3.12.0-3build1_arm64.deb ...
1959s Unpacking libblas-dev:arm64 (3.12.0-3build1) ...
1959s Selecting previously unselected package libbz2-dev:arm64.
1959s Preparing to unpack .../24-libbz2-dev_1.0.8-5.1_arm64.deb ...
1959s Unpacking libbz2-dev:arm64 (1.0.8-5.1) ...
1959s Selecting previously unselected package libdeflate-dev:arm64.
1959s Preparing to unpack .../25-libdeflate-dev_1.20-1_arm64.deb ...
1959s Unpacking libdeflate-dev:arm64 (1.20-1) ...
1959s Selecting previously unselected package libicu-dev:arm64.
1959s Preparing to unpack .../26-libicu-dev_74.2-1ubuntu3_arm64.deb ...
1959s Unpacking libicu-dev:arm64 (74.2-1ubuntu3) ...
1960s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
1960s Preparing to unpack .../27-libjpeg-turbo8-dev_2.1.5-2ubuntu2_arm64.deb ...
1960s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ...
1960s Selecting previously unselected package libjpeg8-dev:arm64.
1960s Preparing to unpack .../28-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
1960s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
1960s Selecting previously unselected package libjpeg-dev:arm64.
1960s Preparing to unpack .../29-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
1960s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
1960s Selecting previously unselected package liblapack-dev:arm64.
1960s Preparing to unpack .../30-liblapack-dev_3.12.0-3build1_arm64.deb ...
1960s Unpacking liblapack-dev:arm64 (3.12.0-3build1) ...
1960s Selecting previously unselected package libncurses-dev:arm64.
1960s Preparing to unpack .../31-libncurses-dev_6.5-2_arm64.deb ...
1960s Unpacking libncurses-dev:arm64 (6.5-2) ...
1960s Selecting previously unselected package libpcre2-16-0:arm64.
1960s Preparing to unpack .../32-libpcre2-16-0_10.42-4ubuntu2_arm64.deb ...
1960s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu2) ...
1960s Selecting previously unselected package libpcre2-32-0:arm64.
1960s Preparing to unpack .../33-libpcre2-32-0_10.42-4ubuntu2_arm64.deb ...
1960s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu2) ...
1960s Selecting previously unselected package libpcre2-posix3:arm64.
1960s Preparing to unpack .../34-libpcre2-posix3_10.42-4ubuntu2_arm64.deb ...
1960s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu2) ...
1960s Selecting previously unselected package libpcre2-dev:arm64.
1960s Preparing to unpack .../35-libpcre2-dev_10.42-4ubuntu2_arm64.deb ...
1960s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu2) ...
1961s Selecting previously unselected package libpkgconf3:arm64.
1961s Preparing to unpack .../36-libpkgconf3_1.8.1-3_arm64.deb ...
1961s Unpacking libpkgconf3:arm64 (1.8.1-3) ...
1961s Selecting previously unselected package zlib1g-dev:arm64.
1961s Preparing to unpack .../37-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ...
1961s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ...
1961s Selecting previously unselected package libpng-dev:arm64.
1961s Preparing to unpack .../38-libpng-dev_1.6.43-5build1_arm64.deb ...
1961s Unpacking libpng-dev:arm64 (1.6.43-5build1) ...
1961s Selecting previously unselected package libreadline-dev:arm64.
1962s Preparing to unpack .../39-libreadline-dev_8.2-4build1_arm64.deb ...
1962s Unpacking libreadline-dev:arm64 (8.2-4build1) ...
1962s Selecting previously unselected package liblzma-dev:arm64.
1962s Preparing to unpack .../40-liblzma-dev_5.6.1+really5.4.5-1_arm64.deb ...
1962s Unpacking liblzma-dev:arm64 (5.6.1+really5.4.5-1) ...
1962s Selecting previously unselected package pkgconf-bin.
1962s Preparing to unpack .../41-pkgconf-bin_1.8.1-3_arm64.deb ...
1962s Unpacking pkgconf-bin (1.8.1-3) ...
1962s Selecting previously unselected package pkgconf:arm64.
1962s Preparing to unpack .../42-pkgconf_1.8.1-3_arm64.deb ...
1962s Unpacking pkgconf:arm64 (1.8.1-3) ...
1962s Selecting previously unselected package libtirpc-dev:arm64.
1962s Preparing to unpack .../43-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ...
1962s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
1962s Selecting previously unselected package r-base-dev.
1962s Preparing to unpack .../44-r-base-dev_4.4.1-1_all.deb ...
1962s Unpacking r-base-dev (4.4.1-1) ...
1962s Selecting previously unselected package pkg-r-autopkgtest.
1962s Preparing to unpack .../45-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
1962s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
1962s Selecting previously unselected package autopkgtest-satdep.
1962s Preparing to unpack .../46-2-autopkgtest-satdep.deb ...
1962s Unpacking autopkgtest-satdep (0) ...
1963s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ...
1963s Setting up libncurses-dev:arm64 (6.5-2) ...
1963s Setting up libreadline-dev:arm64 (8.2-4build1) ...
1963s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu2) ...
1963s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu2) ...
1963s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
1963s Setting up libpkgconf3:arm64 (1.8.1-3) ...
1963s Setting up libmpc3:arm64 (1.3.1-1build1) ...
1963s Setting up icu-devtools (74.2-1ubuntu3) ...
1963s Setting up pkgconf-bin (1.8.1-3) ...
1963s Setting up liblzma-dev:arm64 (5.6.1+really5.4.5-1) ...
1963s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ...
1963s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu2) ...
1963s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
1963s Setting up libisl23:arm64 (0.26-3build1) ...
1963s Setting up libgfortran-13-dev:arm64 (13.2.0-23ubuntu4) ...
1963s Setting up libdeflate-dev:arm64 (1.20-1) ...
1963s Setting up libicu-dev:arm64 (74.2-1ubuntu3) ...
1963s Setting up libcc1-0:arm64 (14.1.0-1ubuntu1) ...
1963s Setting up libblas-dev:arm64 (3.12.0-3build1) ...
1963s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
1963s Setting up dctrl-tools (2.24-3build3) ...
1963s Setting up libbz2-dev:arm64 (1.0.8-5.1) ...
1963s Setting up libpcre2-dev:arm64 (10.42-4ubuntu2) ...
1963s Setting up cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ...
1963s Setting up libpng-dev:arm64 (1.6.43-5build1) ...
1963s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
1963s Setting up gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ...
1963s Setting up pkgconf:arm64 (1.8.1-3) ...
1963s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1963s Setting up gcc-13 (13.2.0-23ubuntu4) ...
1963s Setting up liblapack-dev:arm64 (3.12.0-3build1) ...
1963s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
1963s Setting up g++-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ...
1963s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1963s Setting up g++-13 (13.2.0-23ubuntu4) ...
1963s Setting up cpp-13 (13.2.0-23ubuntu4) ...
1963s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ...
1963s Setting up gfortran-13 (13.2.0-23ubuntu4) ...
1963s Setting up cpp (4:13.2.0-7ubuntu1) ...
1963s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1963s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1963s Setting up gcc (4:13.2.0-7ubuntu1) ...
1963s Setting up g++ (4:13.2.0-7ubuntu1) ...
1963s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1963s Setting up build-essential (12.10ubuntu1) ...
1963s Setting up gfortran (4:13.2.0-7ubuntu1) ...
1963s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
1963s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
1963s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
1963s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
1963s Setting up r-base-dev (4.4.1-1) ...
1963s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
1963s Setting up autopkgtest-satdep (0) ...
1963s Processing triggers for man-db (2.12.1-2) ...
1964s Processing triggers for install-info (7.1-3build2) ...
1965s Processing triggers for libc-bin (2.39-0ubuntu9) ...
1968s (Reading database ... 103743 files and directories currently installed.)
1968s Removing autopkgtest-satdep (0) ...
1969s autopkgtest [11:00:37]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
1969s autopkgtest [11:00:37]: test pkg-r-autopkgtest: [-----------------------
1969s Test: Try to load the R library bigmemory
1969s 
1969s R version 4.4.1 (2024-06-14) -- "Race for Your Life"
1969s Copyright (C) 2024 The R Foundation for Statistical Computing
1969s Platform: aarch64-unknown-linux-gnu
1969s 
1969s R is free software and comes with ABSOLUTELY NO WARRANTY.
1969s You are welcome to redistribute it under certain conditions.
1969s Type 'license()' or 'licence()' for distribution details.
1969s 
1969s R is a collaborative project with many contributors.
1969s Type 'contributors()' for more information and
1969s 'citation()' on how to cite R or R packages in publications.
1969s 
1969s Type 'demo()' for some demos, 'help()' for on-line help, or
1969s 'help.start()' for an HTML browser interface to help.
1969s Type 'q()' to quit R.
1969s 
1970s > library('bigmemory')
1970s > 
1970s > 
1970s Other tests are currently unsupported!
1970s They will be progressively added.
1970s autopkgtest [11:00:38]: test pkg-r-autopkgtest: -----------------------]
1971s pkg-r-autopkgtest    PASS
1971s autopkgtest [11:00:39]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
1971s autopkgtest [11:00:39]: @@@@@@@@@@@@@@@@@@@@ summary
1971s run-unit-test        FAIL non-zero exit status 1
1971s pkg-r-autopkgtest    PASS
2027s nova [W] Skipping flock in bos03-arm64
2027s Creating nova instance adt-oracular-arm64-r-cran-bigmemory-20240616-102748-juju-7f2275-prod-proposed-migration-environment-3-0c3c68ad-886e-4580-93fd-afdc39790303 from image adt/ubuntu-oracular-arm64-server-20240615.img (UUID 891f4ace-6bc2-49e5-8107-dfb2761629d0)...