0s autopkgtest [15:44:25]: starting date and time: 2024-06-30 15:44:25+0000 0s autopkgtest [15:44:25]: git checkout: 85adf9a1 setup-testbed: prevent /tmp from getting a tmpfs mount 0s autopkgtest [15:44:25]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wmrj53vz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:qiime --apt-upgrade q2-metadata --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=qiime/2024.5.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-50.secgroup --name adt-oracular-arm64-q2-metadata-20240630-154425-juju-7f2275-prod-proposed-migration-environment-3-a0963e0f-253d-494d-b774-43bf8ab2ebb4 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [15:45:17]: testbed dpkg architecture: arm64 52s autopkgtest [15:45:17]: testbed apt version: 2.9.5 52s autopkgtest [15:45:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 53s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 53s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 53s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.8 kB] 53s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [378 kB] 53s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 53s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [82.2 kB] 53s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [32.5 kB] 53s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [332 kB] 53s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [7928 B] 53s Fetched 997 kB in 1s (1227 kB/s) 53s Reading package lists... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade... 56s The following packages will be upgraded: 56s lto-disabled-list 57s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 12.3 kB of archives. 57s After this operation, 0 B of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 lto-disabled-list all 50 [12.3 kB] 57s Fetched 12.3 kB in 0s (85.2 kB/s) 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78328 files and directories currently installed.) 57s Preparing to unpack .../lto-disabled-list_50_all.deb ... 57s Unpacking lto-disabled-list (50) over (49) ... 57s Setting up lto-disabled-list (50) ... 57s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 59s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 59s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 59s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 59s Reading package lists... 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Calculating upgrade... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s autopkgtest [15:45:29]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 64s autopkgtest [15:45:29]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-metadata 66s Get:1 http://ftpmaster.internal/ubuntu oracular/universe q2-metadata 2024.2.0+dfsg-1ubuntu1 (dsc) [2537 B] 66s Get:2 http://ftpmaster.internal/ubuntu oracular/universe q2-metadata 2024.2.0+dfsg-1ubuntu1 (tar) [229 kB] 66s Get:3 http://ftpmaster.internal/ubuntu oracular/universe q2-metadata 2024.2.0+dfsg-1ubuntu1 (diff) [7860 B] 66s gpgv: Signature made Mon Jun 3 19:45:53 2024 UTC 66s gpgv: using RSA key 439884E6862A429C290DF63B033C4CA276024834 66s gpgv: issuer "athos.ribeiro@canonical.com" 66s gpgv: Can't check signature: No public key 66s dpkg-source: warning: cannot verify inline signature for ./q2-metadata_2024.2.0+dfsg-1ubuntu1.dsc: no acceptable signature found 66s autopkgtest [15:45:31]: testing package q2-metadata version 2024.2.0+dfsg-1ubuntu1 66s autopkgtest [15:45:31]: build not needed 67s autopkgtest [15:45:32]: test run-unit-test: preparing testbed 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Starting pkgProblemResolver with broken count: 0 68s Starting 2 pkgProblemResolver with broken count: 0 68s Done 69s The following additional packages will be installed: 69s fonts-glyphicons-halflings javascript-common libaec0 libblas3 libgfortran5 69s libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libjs-bootstrap libjs-jquery 69s libjs-jquery-datatables libjs-jquery-hotkeys libjs-jquery-isonscreen 69s libjs-jquery-metadata libjs-jquery-tablesorter 69s libjs-jquery-throttle-debounce libjs-popper.js liblapack3 liblbfgsb0 liblzf1 69s libnorm1t64 libopenblas0 libopenblas0-pthread libpgm-5.3-0t64 libsodium23 69s libssw0 libsz2 libxslt1.1 libyajl2 libzmq5 node-fortawesome-fontawesome-free 69s node-normalize.css python3-all python3-bcrypt python3-bibtexparser 69s python3-biom-format python3-click python3-colorama python3-coverage 69s python3-dateutil python3-decorator python3-dill python3-filelock 69s python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk 69s python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians 69s python3-ijson python3-iniconfig python3-itsdangerous python3-lxml 69s python3-nacl python3-natsort python3-networkx python3-numpy 69s python3-packaging python3-pandas python3-pandas-lib python3-paramiko 69s python3-parsl python3-platformdirs python3-pluggy python3-psutil 69s python3-public python3-py python3-pytest python3-pytest-cov python3-scipy 69s python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy 69s python3-tblib python3-tomlkit python3-typeguard python3-tzlocal 69s python3-werkzeug python3-zmq q2-metadata q2-quality-filter q2-types 69s q2templates qiime 69s Suggested packages: 69s apache2 | lighttpd | httpd libjs-html5shiv python-biom-format-doc 69s python-coverage-doc python3-objgraph python3-dotenv python-flask-doc 69s python-flufl.lock-doc python-greenlet-dev python-greenlet-doc 69s python-h5py-doc python-lxml-doc python-nacl-doc python-natsort-doc 69s python3-gdal python3-matplotlib python3-pydot python3-pygraphviz gcc 69s gfortran python-numpy-doc python3-dev python-pandas-doc python3-statsmodels 69s python3-gssapi python3-invoke python-public-doc subversion python-scipy-doc 69s python-setuptools-doc python-skbio-doc python-sqlalchemy-doc python3-fdb 69s python3-pymssql python3-mysqldb python3-psycopg2 python3-asyncpg 69s python3-aiosqlite ipython3 python-werkzeug-doc python3-watchdog 69s Recommended packages: 69s node-jquery python3-asgiref python3-simplejson python3-bs4 python3-cssselect 69s python3-html5lib python3-matplotlib python3-bottleneck python3-numexpr 69s python3-odf python3-openpyxl python3-tables r-cran-plotly g++ | c++-compiler 69s python3-pil python3-sqlalchemy-ext python3-pyinotify q2cli q2-cutadapt 69s q2-demux q2-feature-classifier q2-feature-table 69s The following NEW packages will be installed: 69s autopkgtest-satdep fonts-glyphicons-halflings javascript-common libaec0 69s libblas3 libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 69s libjs-bootstrap libjs-jquery libjs-jquery-datatables libjs-jquery-hotkeys 69s libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter 69s libjs-jquery-throttle-debounce libjs-popper.js liblapack3 liblbfgsb0 liblzf1 69s libnorm1t64 libopenblas0 libopenblas0-pthread libpgm-5.3-0t64 libsodium23 69s libssw0 libsz2 libxslt1.1 libyajl2 libzmq5 node-fortawesome-fontawesome-free 69s node-normalize.css python3-all python3-bcrypt python3-bibtexparser 69s python3-biom-format python3-click python3-colorama python3-coverage 69s python3-dateutil python3-decorator python3-dill python3-filelock 69s python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk 69s python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians 69s python3-ijson python3-iniconfig python3-itsdangerous python3-lxml 69s python3-nacl python3-natsort python3-networkx python3-numpy 69s python3-packaging python3-pandas python3-pandas-lib python3-paramiko 69s python3-parsl python3-platformdirs python3-pluggy python3-psutil 69s python3-public python3-py python3-pytest python3-pytest-cov python3-scipy 69s python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy 69s python3-tblib python3-tomlkit python3-typeguard python3-tzlocal 69s python3-werkzeug python3-zmq q2-metadata q2-quality-filter q2-types 69s q2templates qiime 69s 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. 69s Need to get 65.3 MB/65.3 MB of archives. 69s After this operation, 358 MB of additional disk space will be used. 69s Get:1 /tmp/autopkgtest.UmzNoo/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 69s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 69s Get:3 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] 69s Get:4 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 69s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 javascript-common all 11+nmu1 [5936 B] 69s Get:6 http://ftpmaster.internal/ubuntu oracular/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 69s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 69s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB] 70s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB] 70s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 70s Get:11 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [1192 kB] 70s Get:12 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu4 [55.8 kB] 70s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 70s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 70s Get:15 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-metadata all 12-4 [6582 B] 70s Get:16 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [193 kB] 70s Get:17 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 70s Get:18 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 70s Get:19 http://ftpmaster.internal/ubuntu oracular/universe arm64 libopenblas0-pthread arm64 0.3.27+ds-2 [5458 kB] 70s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 70s Get:21 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 70s Get:22 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 70s Get:23 http://ftpmaster.internal/ubuntu oracular/universe arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1build1 [150 kB] 70s Get:24 http://ftpmaster.internal/ubuntu oracular/universe arm64 libopenblas0 arm64 0.3.27+ds-2 [6222 B] 70s Get:25 http://ftpmaster.internal/ubuntu oracular/universe arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1build1 [162 kB] 70s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 libsodium23 arm64 1.0.18-1build3 [119 kB] 70s Get:27 http://ftpmaster.internal/ubuntu oracular/universe arm64 libssw0 arm64 1.1-14build1 [21.4 kB] 70s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 libxslt1.1 arm64 1.1.39-0exp1build1 [166 kB] 70s Get:29 http://ftpmaster.internal/ubuntu oracular/universe arm64 libzmq5 arm64 4.3.5-1build2 [247 kB] 70s Get:30 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1573 kB] 70s Get:31 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 70s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-all arm64 3.12.3-0ubuntu1 [888 B] 70s Get:33 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.5 kB] 70s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB] 70s Get:35 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu3 [888 kB] 70s Get:36 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 70s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 70s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-click all 8.1.7-1 [79.1 kB] 70s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 70s Get:40 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [4178 kB] 70s Get:41 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 70s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 70s Get:43 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.12.0-2 [15.9 MB] 71s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB] 71s Get:45 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-coverage arm64 7.4.4+dfsg1-0ubuntu2 [148 kB] 71s Get:46 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-dill all 0.3.8-1 [83.0 kB] 71s Get:47 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-filelock all 3.15.4-1 [12.8 kB] 71s Get:48 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-itsdangerous all 2.2.0-1 [15.2 kB] 71s Get:49 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-werkzeug all 3.0.3-1 [170 kB] 71s Get:50 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-flask all 3.0.3-1ubuntu1 [83.2 kB] 71s Get:51 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-greenlet arm64 3.0.3-0ubuntu5 [153 kB] 71s Get:52 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-sqlalchemy all 1.4.50+ds1-1build1 [1020 kB] 71s Get:53 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-flask-sqlalchemy all 3.0.3-1 [30.9 kB] 71s Get:54 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-psutil arm64 5.9.8-2build2 [196 kB] 71s Get:55 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-public all 4.1.0-1 [7052 B] 71s Get:56 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-flufl.lock all 8.1.0-1 [12.4 kB] 71s Get:57 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-globus-sdk all 3.41.0-1 [225 kB] 71s Get:58 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-hdmedians arm64 0.14.2-5.1build1 [116 kB] 71s Get:59 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 71s Get:60 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-lxml arm64 5.2.1-1 [1179 kB] 71s Get:61 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-nacl arm64 1.5.0-4build1 [55.6 kB] 71s Get:62 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-natsort all 8.0.2-2 [33.8 kB] 71s Get:63 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 71s Get:64 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.0-1 [41.1 kB] 71s Get:65 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-bcrypt arm64 4.1.2-1 [218 kB] 71s Get:66 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-paramiko all 3.4.0-1ubuntu1 [145 kB] 71s Get:67 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-setproctitle arm64 1.3.3-1build2 [18.6 kB] 71s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-tblib all 3.0.0-5 [12.9 kB] 71s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-typeguard all 4.1.5-1 [32.7 kB] 71s Get:70 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-py all 1.11.0-2 [72.7 kB] 71s Get:71 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-zmq arm64 24.0.1-5build1 [280 kB] 71s Get:72 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-parsl all 2024.05.27+ds-1 [274 kB] 71s Get:73 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-platformdirs all 4.2.1-1 [16.3 kB] 71s Get:74 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 71s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 71s Get:76 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 71s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 71s Get:78 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 71s Get:79 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-skbio arm64 0.6.1-2 [1323 kB] 71s Get:80 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-tomlkit all 0.12.5-1 [37.7 kB] 71s Get:81 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-tzlocal all 5.2-1.1 [20.5 kB] 71s Get:82 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 qiime all 2024.5.0-1 [9078 B] 71s Get:83 http://ftpmaster.internal/ubuntu oracular/universe arm64 q2templates all 2024.5.0+ds-1 [12.0 kB] 71s Get:84 http://ftpmaster.internal/ubuntu oracular/main arm64 libyajl2 arm64 2.1.0-5build1 [19.7 kB] 71s Get:85 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ijson arm64 3.3.0-1 [36.7 kB] 71s Get:86 http://ftpmaster.internal/ubuntu oracular/universe arm64 q2-types all 2024.2.0-1ubuntu1 [5752 kB] 71s Get:87 http://ftpmaster.internal/ubuntu oracular/universe arm64 q2-quality-filter all 2024.2.0-1ubuntu1 [23.2 kB] 71s Get:88 http://ftpmaster.internal/ubuntu oracular/universe arm64 q2-metadata arm64 2024.2.0+dfsg-1ubuntu1 [16.7 kB] 72s Fetched 65.3 MB in 2s (26.3 MB/s) 72s Selecting previously unselected package libjs-jquery. 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78328 files and directories currently installed.) 72s Preparing to unpack .../00-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 72s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 72s Selecting previously unselected package libjs-jquery-hotkeys. 72s Preparing to unpack .../01-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... 72s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 72s Selecting previously unselected package fonts-glyphicons-halflings. 72s Preparing to unpack .../02-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 72s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 72s Selecting previously unselected package javascript-common. 72s Preparing to unpack .../03-javascript-common_11+nmu1_all.deb ... 72s Unpacking javascript-common (11+nmu1) ... 72s Selecting previously unselected package libaec0:arm64. 72s Preparing to unpack .../04-libaec0_1.1.3-1_arm64.deb ... 72s Unpacking libaec0:arm64 (1.1.3-1) ... 72s Selecting previously unselected package libblas3:arm64. 72s Preparing to unpack .../05-libblas3_3.12.0-3build1_arm64.deb ... 72s Unpacking libblas3:arm64 (3.12.0-3build1) ... 72s Selecting previously unselected package libgfortran5:arm64. 72s Preparing to unpack .../06-libgfortran5_14.1.0-1ubuntu1_arm64.deb ... 72s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ... 72s Selecting previously unselected package libgomp1:arm64. 72s Preparing to unpack .../07-libgomp1_14.1.0-1ubuntu1_arm64.deb ... 72s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ... 72s Selecting previously unselected package libsz2:arm64. 72s Preparing to unpack .../08-libsz2_1.1.3-1_arm64.deb ... 72s Unpacking libsz2:arm64 (1.1.3-1) ... 72s Selecting previously unselected package libhdf5-103-1t64:arm64. 72s Preparing to unpack .../09-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 72s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 72s Selecting previously unselected package libhdf5-hl-100t64:arm64. 72s Preparing to unpack .../10-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 72s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 72s Selecting previously unselected package libjs-bootstrap. 72s Preparing to unpack .../11-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 72s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 72s Selecting previously unselected package libjs-jquery-datatables. 72s Preparing to unpack .../12-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 72s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 72s Selecting previously unselected package libjs-jquery-metadata. 72s Preparing to unpack .../13-libjs-jquery-metadata_12-4_all.deb ... 72s Unpacking libjs-jquery-metadata (12-4) ... 72s Selecting previously unselected package libjs-jquery-tablesorter. 72s Preparing to unpack .../14-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-3_all.deb ... 72s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... 72s Selecting previously unselected package libjs-jquery-throttle-debounce. 72s Preparing to unpack .../15-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 72s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 72s Selecting previously unselected package libjs-popper.js. 72s Preparing to unpack .../16-libjs-popper.js_1.16.1+ds-6_all.deb ... 72s Unpacking libjs-popper.js (1.16.1+ds-6) ... 72s Selecting previously unselected package libopenblas0-pthread:arm64. 72s Preparing to unpack .../17-libopenblas0-pthread_0.3.27+ds-2_arm64.deb ... 72s Unpacking libopenblas0-pthread:arm64 (0.3.27+ds-2) ... 73s Selecting previously unselected package liblapack3:arm64. 73s Preparing to unpack .../18-liblapack3_3.12.0-3build1_arm64.deb ... 73s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 73s Selecting previously unselected package liblbfgsb0:arm64. 73s Preparing to unpack .../19-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 73s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 73s Selecting previously unselected package liblzf1:arm64. 73s Preparing to unpack .../20-liblzf1_3.6-4_arm64.deb ... 73s Unpacking liblzf1:arm64 (3.6-4) ... 73s Selecting previously unselected package libnorm1t64:arm64. 73s Preparing to unpack .../21-libnorm1t64_1.5.9+dfsg-3.1build1_arm64.deb ... 73s Unpacking libnorm1t64:arm64 (1.5.9+dfsg-3.1build1) ... 73s Selecting previously unselected package libopenblas0:arm64. 73s Preparing to unpack .../22-libopenblas0_0.3.27+ds-2_arm64.deb ... 73s Unpacking libopenblas0:arm64 (0.3.27+ds-2) ... 73s Selecting previously unselected package libpgm-5.3-0t64:arm64. 73s Preparing to unpack .../23-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_arm64.deb ... 73s Unpacking libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1build1) ... 73s Selecting previously unselected package libsodium23:arm64. 73s Preparing to unpack .../24-libsodium23_1.0.18-1build3_arm64.deb ... 73s Unpacking libsodium23:arm64 (1.0.18-1build3) ... 73s Selecting previously unselected package libssw0:arm64. 73s Preparing to unpack .../25-libssw0_1.1-14build1_arm64.deb ... 73s Unpacking libssw0:arm64 (1.1-14build1) ... 73s Selecting previously unselected package libxslt1.1:arm64. 73s Preparing to unpack .../26-libxslt1.1_1.1.39-0exp1build1_arm64.deb ... 73s Unpacking libxslt1.1:arm64 (1.1.39-0exp1build1) ... 73s Selecting previously unselected package libzmq5:arm64. 73s Preparing to unpack .../27-libzmq5_4.3.5-1build2_arm64.deb ... 73s Unpacking libzmq5:arm64 (4.3.5-1build2) ... 73s Selecting previously unselected package node-fortawesome-fontawesome-free. 73s Preparing to unpack .../28-node-fortawesome-fontawesome-free_6.4.2+ds1-1_all.deb ... 73s Unpacking node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 73s Selecting previously unselected package node-normalize.css. 73s Preparing to unpack .../29-node-normalize.css_8.0.1-5_all.deb ... 73s Unpacking node-normalize.css (8.0.1-5) ... 73s Selecting previously unselected package python3-all. 73s Preparing to unpack .../30-python3-all_3.12.3-0ubuntu1_arm64.deb ... 73s Unpacking python3-all (3.12.3-0ubuntu1) ... 73s Selecting previously unselected package python3-bibtexparser. 73s Preparing to unpack .../31-python3-bibtexparser_2.0.0b5+really1.4.1-1_all.deb ... 73s Unpacking python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 73s Selecting previously unselected package python3-numpy. 73s Preparing to unpack .../32-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ... 73s Unpacking python3-numpy (1:1.26.4+ds-10) ... 73s Selecting previously unselected package python3-h5py-serial. 73s Preparing to unpack .../33-python3-h5py-serial_3.10.0-1ubuntu3_arm64.deb ... 73s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 73s Selecting previously unselected package python3-h5py. 73s Preparing to unpack .../34-python3-h5py_3.10.0-1ubuntu3_all.deb ... 73s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 73s Selecting previously unselected package python3-colorama. 74s Preparing to unpack .../35-python3-colorama_0.4.6-4_all.deb ... 74s Unpacking python3-colorama (0.4.6-4) ... 74s Selecting previously unselected package python3-click. 74s Preparing to unpack .../36-python3-click_8.1.7-1_all.deb ... 74s Unpacking python3-click (8.1.7-1) ... 74s Selecting previously unselected package python3-dateutil. 74s Preparing to unpack .../37-python3-dateutil_2.9.0-2_all.deb ... 74s Unpacking python3-dateutil (2.9.0-2) ... 74s Selecting previously unselected package python3-pandas-lib:arm64. 74s Preparing to unpack .../38-python3-pandas-lib_2.1.4+dfsg-8_arm64.deb ... 74s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 74s Selecting previously unselected package python3-pandas. 74s Preparing to unpack .../39-python3-pandas_2.1.4+dfsg-8_all.deb ... 74s Unpacking python3-pandas (2.1.4+dfsg-8) ... 74s Selecting previously unselected package python3-decorator. 74s Preparing to unpack .../40-python3-decorator_5.1.1-5_all.deb ... 74s Unpacking python3-decorator (5.1.1-5) ... 74s Selecting previously unselected package python3-scipy. 74s Preparing to unpack .../41-python3-scipy_1.12.0-2_arm64.deb ... 74s Unpacking python3-scipy (1.12.0-2) ... 74s Selecting previously unselected package python3-biom-format. 74s Preparing to unpack .../42-python3-biom-format_2.1.16-1_arm64.deb ... 74s Unpacking python3-biom-format (2.1.16-1) ... 74s Selecting previously unselected package python3-coverage. 74s Preparing to unpack .../43-python3-coverage_7.4.4+dfsg1-0ubuntu2_arm64.deb ... 74s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu2) ... 74s Selecting previously unselected package python3-dill. 74s Preparing to unpack .../44-python3-dill_0.3.8-1_all.deb ... 74s Unpacking python3-dill (0.3.8-1) ... 74s Selecting previously unselected package python3-filelock. 74s Preparing to unpack .../45-python3-filelock_3.15.4-1_all.deb ... 74s Unpacking python3-filelock (3.15.4-1) ... 74s Selecting previously unselected package python3-itsdangerous. 74s Preparing to unpack .../46-python3-itsdangerous_2.2.0-1_all.deb ... 74s Unpacking python3-itsdangerous (2.2.0-1) ... 74s Selecting previously unselected package python3-werkzeug. 74s Preparing to unpack .../47-python3-werkzeug_3.0.3-1_all.deb ... 74s Unpacking python3-werkzeug (3.0.3-1) ... 75s Selecting previously unselected package python3-flask. 75s Preparing to unpack .../48-python3-flask_3.0.3-1ubuntu1_all.deb ... 75s Unpacking python3-flask (3.0.3-1ubuntu1) ... 75s Selecting previously unselected package python3-greenlet. 75s Preparing to unpack .../49-python3-greenlet_3.0.3-0ubuntu5_arm64.deb ... 75s Unpacking python3-greenlet (3.0.3-0ubuntu5) ... 75s Selecting previously unselected package python3-sqlalchemy. 75s Preparing to unpack .../50-python3-sqlalchemy_1.4.50+ds1-1build1_all.deb ... 75s Unpacking python3-sqlalchemy (1.4.50+ds1-1build1) ... 75s Selecting previously unselected package python3-flask-sqlalchemy. 75s Preparing to unpack .../51-python3-flask-sqlalchemy_3.0.3-1_all.deb ... 75s Unpacking python3-flask-sqlalchemy (3.0.3-1) ... 75s Selecting previously unselected package python3-psutil. 75s Preparing to unpack .../52-python3-psutil_5.9.8-2build2_arm64.deb ... 75s Unpacking python3-psutil (5.9.8-2build2) ... 75s Selecting previously unselected package python3-public. 75s Preparing to unpack .../53-python3-public_4.1.0-1_all.deb ... 75s Unpacking python3-public (4.1.0-1) ... 75s Selecting previously unselected package python3-flufl.lock. 75s Preparing to unpack .../54-python3-flufl.lock_8.1.0-1_all.deb ... 75s Unpacking python3-flufl.lock (8.1.0-1) ... 75s Selecting previously unselected package python3-globus-sdk. 75s Preparing to unpack .../55-python3-globus-sdk_3.41.0-1_all.deb ... 75s Unpacking python3-globus-sdk (3.41.0-1) ... 75s Selecting previously unselected package python3-hdmedians. 75s Preparing to unpack .../56-python3-hdmedians_0.14.2-5.1build1_arm64.deb ... 75s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 75s Selecting previously unselected package python3-iniconfig. 75s Preparing to unpack .../57-python3-iniconfig_1.1.1-2_all.deb ... 75s Unpacking python3-iniconfig (1.1.1-2) ... 75s Selecting previously unselected package python3-lxml:arm64. 75s Preparing to unpack .../58-python3-lxml_5.2.1-1_arm64.deb ... 75s Unpacking python3-lxml:arm64 (5.2.1-1) ... 75s Selecting previously unselected package python3-nacl. 75s Preparing to unpack .../59-python3-nacl_1.5.0-4build1_arm64.deb ... 75s Unpacking python3-nacl (1.5.0-4build1) ... 75s Selecting previously unselected package python3-natsort. 75s Preparing to unpack .../60-python3-natsort_8.0.2-2_all.deb ... 75s Unpacking python3-natsort (8.0.2-2) ... 75s Selecting previously unselected package python3-networkx. 75s Preparing to unpack .../61-python3-networkx_3.2.1-4ubuntu1_all.deb ... 75s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 75s Selecting previously unselected package python3-packaging. 75s Preparing to unpack .../62-python3-packaging_24.0-1_all.deb ... 75s Unpacking python3-packaging (24.0-1) ... 76s Selecting previously unselected package python3-bcrypt. 76s Preparing to unpack .../63-python3-bcrypt_4.1.2-1_arm64.deb ... 76s Unpacking python3-bcrypt (4.1.2-1) ... 76s Selecting previously unselected package python3-paramiko. 76s Preparing to unpack .../64-python3-paramiko_3.4.0-1ubuntu1_all.deb ... 76s Unpacking python3-paramiko (3.4.0-1ubuntu1) ... 76s Selecting previously unselected package python3-setproctitle:arm64. 76s Preparing to unpack .../65-python3-setproctitle_1.3.3-1build2_arm64.deb ... 76s Unpacking python3-setproctitle:arm64 (1.3.3-1build2) ... 76s Selecting previously unselected package python3-tblib. 76s Preparing to unpack .../66-python3-tblib_3.0.0-5_all.deb ... 76s Unpacking python3-tblib (3.0.0-5) ... 76s Selecting previously unselected package python3-typeguard. 76s Preparing to unpack .../67-python3-typeguard_4.1.5-1_all.deb ... 76s Unpacking python3-typeguard (4.1.5-1) ... 76s Selecting previously unselected package python3-py. 76s Preparing to unpack .../68-python3-py_1.11.0-2_all.deb ... 76s Unpacking python3-py (1.11.0-2) ... 76s Selecting previously unselected package python3-zmq. 76s Preparing to unpack .../69-python3-zmq_24.0.1-5build1_arm64.deb ... 76s Unpacking python3-zmq (24.0.1-5build1) ... 76s Selecting previously unselected package python3-parsl. 76s Preparing to unpack .../70-python3-parsl_2024.05.27+ds-1_all.deb ... 76s Unpacking python3-parsl (2024.05.27+ds-1) ... 76s Selecting previously unselected package python3-platformdirs. 76s Preparing to unpack .../71-python3-platformdirs_4.2.1-1_all.deb ... 76s Unpacking python3-platformdirs (4.2.1-1) ... 76s Selecting previously unselected package python3-pluggy. 76s Preparing to unpack .../72-python3-pluggy_1.5.0-1_all.deb ... 76s Unpacking python3-pluggy (1.5.0-1) ... 76s Selecting previously unselected package python3-pytest. 76s Preparing to unpack .../73-python3-pytest_7.4.4-1_all.deb ... 76s Unpacking python3-pytest (7.4.4-1) ... 76s Selecting previously unselected package libjs-jquery-isonscreen. 76s Preparing to unpack .../74-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ... 76s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ... 76s Selecting previously unselected package python3-pytest-cov. 76s Preparing to unpack .../75-python3-pytest-cov_5.0.0-1_all.deb ... 76s Unpacking python3-pytest-cov (5.0.0-1) ... 76s Selecting previously unselected package python3-setuptools. 76s Preparing to unpack .../76-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 76s Unpacking python3-setuptools (68.1.2-2ubuntu1) ... 76s Selecting previously unselected package python3-skbio. 76s Preparing to unpack .../77-python3-skbio_0.6.1-2_arm64.deb ... 76s Unpacking python3-skbio (0.6.1-2) ... 76s Selecting previously unselected package python3-tomlkit. 76s Preparing to unpack .../78-python3-tomlkit_0.12.5-1_all.deb ... 76s Unpacking python3-tomlkit (0.12.5-1) ... 76s Selecting previously unselected package python3-tzlocal. 76s Preparing to unpack .../79-python3-tzlocal_5.2-1.1_all.deb ... 76s Unpacking python3-tzlocal (5.2-1.1) ... 76s Selecting previously unselected package qiime. 76s Preparing to unpack .../80-qiime_2024.5.0-1_all.deb ... 76s Unpacking qiime (2024.5.0-1) ... 76s Selecting previously unselected package q2templates. 76s Preparing to unpack .../81-q2templates_2024.5.0+ds-1_all.deb ... 76s Unpacking q2templates (2024.5.0+ds-1) ... 76s Selecting previously unselected package libyajl2:arm64. 76s Preparing to unpack .../82-libyajl2_2.1.0-5build1_arm64.deb ... 76s Unpacking libyajl2:arm64 (2.1.0-5build1) ... 76s Selecting previously unselected package python3-ijson. 76s Preparing to unpack .../83-python3-ijson_3.3.0-1_arm64.deb ... 76s Unpacking python3-ijson (3.3.0-1) ... 76s Selecting previously unselected package q2-types. 76s Preparing to unpack .../84-q2-types_2024.2.0-1ubuntu1_all.deb ... 76s Unpacking q2-types (2024.2.0-1ubuntu1) ... 77s Selecting previously unselected package q2-quality-filter. 77s Preparing to unpack .../85-q2-quality-filter_2024.2.0-1ubuntu1_all.deb ... 77s Unpacking q2-quality-filter (2024.2.0-1ubuntu1) ... 77s Selecting previously unselected package q2-metadata. 77s Preparing to unpack .../86-q2-metadata_2024.2.0+dfsg-1ubuntu1_arm64.deb ... 77s Unpacking q2-metadata (2024.2.0+dfsg-1ubuntu1) ... 77s Selecting previously unselected package autopkgtest-satdep. 77s Preparing to unpack .../87-1-autopkgtest-satdep.deb ... 77s Unpacking autopkgtest-satdep (0) ... 77s Setting up javascript-common (11+nmu1) ... 77s Setting up python3-iniconfig (1.1.1-2) ... 77s Setting up libnorm1t64:arm64 (1.5.9+dfsg-3.1build1) ... 77s Setting up python3-filelock (3.15.4-1) ... 77s Setting up libsodium23:arm64 (1.0.18-1build3) ... 77s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 77s Setting up python3-tblib (3.0.0-5) ... 78s Setting up python3-py (1.11.0-2) ... 78s Setting up libjs-popper.js (1.16.1+ds-6) ... 78s Setting up python3-colorama (0.4.6-4) ... 78s Setting up python3-public (4.1.0-1) ... 78s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 78s Setting up python3-bcrypt (4.1.2-1) ... 78s Setting up python3-typeguard (4.1.5-1) ... 78s Setting up libyajl2:arm64 (2.1.0-5build1) ... 78s Setting up python3-itsdangerous (2.2.0-1) ... 78s Setting up python3-all (3.12.3-0ubuntu1) ... 78s Setting up python3-coverage (7.4.4+dfsg1-0ubuntu2) ... 78s Setting up node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 78s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 78s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ... 78s Setting up python3-click (8.1.7-1) ... 79s Setting up python3-networkx (3.2.1-4ubuntu1) ... 80s Setting up libaec0:arm64 (1.1.3-1) ... 80s Setting up python3-platformdirs (4.2.1-1) ... 80s Setting up python3-psutil (5.9.8-2build2) ... 80s Setting up python3-natsort (8.0.2-2) ... 80s Setting up python3-flufl.lock (8.1.0-1) ... 80s Setting up libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1build1) ... 80s Setting up python3-decorator (5.1.1-5) ... 81s Setting up libblas3:arm64 (3.12.0-3build1) ... 81s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 81s Setting up python3-packaging (24.0-1) ... 81s Setting up python3-dill (0.3.8-1) ... 81s Setting up liblzf1:arm64 (3.6-4) ... 81s Setting up python3-greenlet (3.0.3-0ubuntu5) ... 81s Setting up python3-setproctitle:arm64 (1.3.3-1build2) ... 81s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ... 81s Setting up python3-pluggy (1.5.0-1) ... 81s Setting up libxslt1.1:arm64 (1.1.39-0exp1build1) ... 81s Setting up python3-dateutil (2.9.0-2) ... 82s Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 82s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' 82s string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) 82s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 82s Setting up python3-tzlocal (5.2-1.1) ... 82s Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 82s Setting up python3-tomlkit (0.12.5-1) ... 82s Setting up node-normalize.css (8.0.1-5) ... 82s Setting up libssw0:arm64 (1.1-14build1) ... 82s Setting up python3-nacl (1.5.0-4build1) ... 82s Setting up python3-globus-sdk (3.41.0-1) ... 82s Setting up libsz2:arm64 (1.1.3-1) ... 82s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 82s Setting up liblapack3:arm64 (3.12.0-3build1) ... 82s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 82s Setting up libopenblas0-pthread:arm64 (0.3.27+ds-2) ... 82s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 82s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 82s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode 82s Setting up libzmq5:arm64 (4.3.5-1build2) ... 82s Setting up python3-ijson (3.3.0-1) ... 83s Setting up python3-pytest (7.4.4-1) ... 83s Setting up python3-sqlalchemy (1.4.50+ds1-1build1) ... 84s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 84s Setting up python3-werkzeug (3.0.3-1) ... 84s Setting up python3-zmq (24.0.1-5build1) ... 84s Setting up libjs-jquery-metadata (12-4) ... 84s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... 84s Setting up python3-numpy (1:1.26.4+ds-10) ... 86s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... 86s Setting up python3-hdmedians (0.14.2-5.1build1) ... 86s Setting up libopenblas0:arm64 (0.3.27+ds-2) ... 86s Setting up python3-lxml:arm64 (5.2.1-1) ... 86s Setting up python3-paramiko (3.4.0-1ubuntu1) ... 87s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 87s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 87s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 87s Setting up python3-scipy (1.12.0-2) ... 90s Setting up python3-flask (3.0.3-1ubuntu1) ... 90s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 90s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 90s Setting up python3-pytest-cov (5.0.0-1) ... 90s Setting up python3-pandas (2.1.4+dfsg-8) ... 95s Setting up python3-h5py (3.10.0-1ubuntu3) ... 95s Setting up python3-flask-sqlalchemy (3.0.3-1) ... 95s Setting up q2templates (2024.5.0+ds-1) ... 95s Setting up python3-parsl (2024.05.27+ds-1) ... 95s Setting up qiime (2024.5.0-1) ... 95s Setting up python3-biom-format (2.1.16-1) ... 96s Setting up python3-skbio (0.6.1-2) ... 96s Setting up q2-types (2024.2.0-1ubuntu1) ... 97s Setting up q2-quality-filter (2024.2.0-1ubuntu1) ... 97s Setting up q2-metadata (2024.2.0+dfsg-1ubuntu1) ... 97s Setting up autopkgtest-satdep (0) ... 97s Processing triggers for man-db (2.12.1-2) ... 98s Processing triggers for libc-bin (2.39-0ubuntu9) ... 104s (Reading database ... 92649 files and directories currently installed.) 104s Removing autopkgtest-satdep (0) ... 104s autopkgtest [15:46:09]: test run-unit-test: [----------------------- 105s ============================= test session starts ============================== 105s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 105s cachedir: .pytest_cache 105s rootdir: /tmp/autopkgtest.UmzNoo/autopkgtest_tmp 105s plugins: typeguard-4.1.5, cov-5.0.0 106s collecting ... collected 0 items / 5 errors 106s 106s ==================================== ERRORS ==================================== 106s _____________ ERROR collecting q2_metadata/tests/test_distance.py ______________ 106s ImportError while importing test module '/tmp/autopkgtest.UmzNoo/autopkgtest_tmp/q2_metadata/tests/test_distance.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s q2_metadata/__init__.py:9: in 106s from ._tabulate import tabulate 106s q2_metadata/_tabulate.py:15: in 106s import qiime2 106s E ModuleNotFoundError: No module named 'qiime2' 106s _______________ ERROR collecting q2_metadata/tests/test_merge.py _______________ 106s ImportError while importing test module '/tmp/autopkgtest.UmzNoo/autopkgtest_tmp/q2_metadata/tests/test_merge.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s q2_metadata/__init__.py:9: in 106s from ._tabulate import tabulate 106s q2_metadata/_tabulate.py:15: in 106s import qiime2 106s E ModuleNotFoundError: No module named 'qiime2' 106s ___________ ERROR collecting q2_metadata/tests/test_plugin_setup.py ____________ 106s ImportError while importing test module '/tmp/autopkgtest.UmzNoo/autopkgtest_tmp/q2_metadata/tests/test_plugin_setup.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s q2_metadata/__init__.py:9: in 106s from ._tabulate import tabulate 106s q2_metadata/_tabulate.py:15: in 106s import qiime2 106s E ModuleNotFoundError: No module named 'qiime2' 106s ______________ ERROR collecting q2_metadata/tests/test_random.py _______________ 106s ImportError while importing test module '/tmp/autopkgtest.UmzNoo/autopkgtest_tmp/q2_metadata/tests/test_random.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s q2_metadata/__init__.py:9: in 106s from ._tabulate import tabulate 106s q2_metadata/_tabulate.py:15: in 106s import qiime2 106s E ModuleNotFoundError: No module named 'qiime2' 106s _____________ ERROR collecting q2_metadata/tests/test_tabulate.py ______________ 106s ImportError while importing test module '/tmp/autopkgtest.UmzNoo/autopkgtest_tmp/q2_metadata/tests/test_tabulate.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s q2_metadata/__init__.py:9: in 106s from ._tabulate import tabulate 106s q2_metadata/_tabulate.py:15: in 106s import qiime2 106s E ModuleNotFoundError: No module named 'qiime2' 106s =============================== warnings summary =============================== 106s q2_metadata/_tabulate.py:10 106s /tmp/autopkgtest.UmzNoo/autopkgtest_tmp/q2_metadata/_tabulate.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 106s import pkg_resources 106s 106s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 106s 106s ---------- coverage: platform linux, python 3.12.4-final-0 ----------- 106s Name Stmts Miss Cover 106s ------------------------------------------------------------ 106s q2_metadata/__init__.py 8 7 12% 106s q2_metadata/_distance.py 11 11 0% 106s q2_metadata/_merge.py 18 18 0% 106s q2_metadata/_random.py 20 20 0% 106s q2_metadata/_tabulate.py 24 19 21% 106s q2_metadata/_version.py 4 4 0% 106s q2_metadata/plugin_setup.py 37 37 0% 106s q2_metadata/tests/__init__.py 0 0 100% 106s q2_metadata/tests/test_distance.py 28 28 0% 106s q2_metadata/tests/test_merge.py 80 80 0% 106s q2_metadata/tests/test_plugin_setup.py 7 7 0% 106s q2_metadata/tests/test_random.py 81 81 0% 106s q2_metadata/tests/test_tabulate.py 65 65 0% 106s ------------------------------------------------------------ 106s TOTAL 383 377 2% 106s 106s =========================== short test summary info ============================ 106s ERROR q2_metadata/tests/test_distance.py 106s ERROR q2_metadata/tests/test_merge.py 106s ERROR q2_metadata/tests/test_plugin_setup.py 106s ERROR q2_metadata/tests/test_random.py 106s ERROR q2_metadata/tests/test_tabulate.py 106s !!!!!!!!!!!!!!!!!!! Interrupted: 5 errors during collection !!!!!!!!!!!!!!!!!!!! 106s ========================= 1 warning, 5 errors in 1.45s ========================= 107s autopkgtest [15:46:12]: test run-unit-test: -----------------------] 107s autopkgtest [15:46:12]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 107s run-unit-test FAIL non-zero exit status 2 107s autopkgtest [15:46:12]: @@@@@@@@@@@@@@@@@@@@ summary 107s run-unit-test FAIL non-zero exit status 2 112s nova [W] Skipping flock in bos03-arm64 112s Creating nova instance adt-oracular-arm64-q2-metadata-20240630-154425-juju-7f2275-prod-proposed-migration-environment-3-a0963e0f-253d-494d-b774-43bf8ab2ebb4 from image adt/ubuntu-oracular-arm64-server-20240630.img (UUID b9670cb5-a36f-47f3-a810-8a32ef456952)...