0s autopkgtest [17:24:12]: starting date and time: 2024-07-23 17:24:12+0000 0s autopkgtest [17:24:12]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [17:24:12]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f15yhmb3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.4-1 python3-stdlib-extensions/3.12.4-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-33.secgroup --name adt-oracular-arm64-python-pot-20240723-172411-juju-7f2275-prod-proposed-migration-environment-2-10e51734-34ce-473b-9ce1-d7f8acfb9072 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 217s autopkgtest [17:27:49]: testbed dpkg architecture: arm64 218s autopkgtest [17:27:50]: testbed apt version: 2.9.6 218s autopkgtest [17:27:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 219s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 219s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [67.3 kB] 219s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [5704 B] 219s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 219s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [381 kB] 220s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [117 kB] 220s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2116 B] 220s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 220s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 220s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [476 kB] 220s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8752 B] 220s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8204 B] 220s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B] 223s Fetched 1246 kB in 2s (612 kB/s) 223s Reading package lists... 227s Reading package lists... 228s Building dependency tree... 228s Reading state information... 228s Calculating upgrade... 229s The following packages will be upgraded: 229s gcc-14-base gdisk libgcc-s1 libpython3-stdlib libstdc++6 netcat-openbsd 229s python3 python3-gdbm python3-minimal systemd-hwe-hwdb 229s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 229s Need to get 1235 kB of archives. 229s After this operation, 71.7 kB of additional disk space will be used. 229s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3-minimal arm64 3.12.4-1 [27.1 kB] 229s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3 arm64 3.12.4-1 [24.0 kB] 229s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libpython3-stdlib arm64 3.12.4-1 [9824 B] 229s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-14-base arm64 14.1.0-5ubuntu1 [49.9 kB] 229s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++6 arm64 14.1.0-5ubuntu1 [749 kB] 230s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-s1 arm64 14.1.0-5ubuntu1 [61.8 kB] 230s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 netcat-openbsd arm64 1.226-1.1 [43.3 kB] 230s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 systemd-hwe-hwdb all 256.2.1 [3210 B] 230s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3-gdbm arm64 3.12.4-2 [18.0 kB] 230s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 gdisk arm64 1.0.10-2 [249 kB] 232s Fetched 1235 kB in 1s (909 kB/s) 232s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 232s Preparing to unpack .../python3-minimal_3.12.4-1_arm64.deb ... 232s Unpacking python3-minimal (3.12.4-1) over (3.12.3-0ubuntu1) ... 232s Setting up python3-minimal (3.12.4-1) ... 233s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 233s Preparing to unpack .../python3_3.12.4-1_arm64.deb ... 233s Unpacking python3 (3.12.4-1) over (3.12.3-0ubuntu1) ... 233s Preparing to unpack .../libpython3-stdlib_3.12.4-1_arm64.deb ... 233s Unpacking libpython3-stdlib:arm64 (3.12.4-1) over (3.12.3-0ubuntu1) ... 234s Preparing to unpack .../gcc-14-base_14.1.0-5ubuntu1_arm64.deb ... 234s Unpacking gcc-14-base:arm64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 234s Setting up gcc-14-base:arm64 (14.1.0-5ubuntu1) ... 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 234s Preparing to unpack .../libstdc++6_14.1.0-5ubuntu1_arm64.deb ... 234s Unpacking libstdc++6:arm64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 234s Setting up libstdc++6:arm64 (14.1.0-5ubuntu1) ... 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 234s Preparing to unpack .../libgcc-s1_14.1.0-5ubuntu1_arm64.deb ... 234s Unpacking libgcc-s1:arm64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 235s Setting up libgcc-s1:arm64 (14.1.0-5ubuntu1) ... 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 235s Preparing to unpack .../netcat-openbsd_1.226-1.1_arm64.deb ... 235s Unpacking netcat-openbsd (1.226-1.1) over (1.226-1ubuntu2) ... 235s Preparing to unpack .../systemd-hwe-hwdb_256.2.1_all.deb ... 235s Unpacking systemd-hwe-hwdb (256.2.1) over (255.1.3) ... 235s Preparing to unpack .../python3-gdbm_3.12.4-2_arm64.deb ... 235s Unpacking python3-gdbm:arm64 (3.12.4-2) over (3.12.3-0ubuntu1) ... 235s Preparing to unpack .../gdisk_1.0.10-2_arm64.deb ... 235s Unpacking gdisk (1.0.10-2) over (1.0.10-1build1) ... 235s Setting up netcat-openbsd (1.226-1.1) ... 235s Setting up gdisk (1.0.10-2) ... 235s Setting up systemd-hwe-hwdb (256.2.1) ... 236s Setting up libpython3-stdlib:arm64 (3.12.4-1) ... 236s Setting up python3 (3.12.4-1) ... 238s Setting up python3-gdbm:arm64 (3.12.4-2) ... 238s Processing triggers for man-db (2.12.1-2) ... 239s Processing triggers for udev (256-1ubuntu1) ... 239s Processing triggers for libc-bin (2.39-0ubuntu9) ... 240s Reading package lists... 241s Building dependency tree... 241s Reading state information... 243s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 269s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 269s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 269s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 269s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 273s Reading package lists... 273s Reading package lists... 274s Building dependency tree... 274s Reading state information... 274s Calculating upgrade... 275s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 275s Reading package lists... 275s Building dependency tree... 275s Reading state information... 276s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 279s autopkgtest [17:28:51]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 279s autopkgtest [17:28:51]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 282s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (dsc) [2114 B] 282s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (tar) [877 kB] 282s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (diff) [4524 B] 282s gpgv: Signature made Thu Apr 18 12:47:08 2024 UTC 282s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 282s gpgv: issuer "gspr@nonempty.org" 282s gpgv: Can't check signature: No public key 282s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.3+dfsg-2.dsc: no acceptable signature found 283s autopkgtest [17:28:55]: testing package python-pot version 0.9.3+dfsg-2 283s autopkgtest [17:28:55]: build not needed 285s autopkgtest [17:28:57]: test upstream.sh: preparing testbed 287s Reading package lists... 287s Building dependency tree... 287s Reading state information... 287s Starting pkgProblemResolver with broken count: 0 287s Starting 2 pkgProblemResolver with broken count: 0 287s Done 288s The following additional packages will be installed: 288s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 288s python3-decorator python3-iniconfig python3-joblib python3-numpy 288s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 288s python3-sklearn python3-sklearn-lib python3-threadpoolctl 288s Suggested packages: 288s gcc gfortran python-numpy-doc python3-dev python-scipy-doc python3-dap 288s python-sklearn-doc ipython3 288s Recommended packages: 288s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 288s python3-matplotlib 288s The following NEW packages will be installed: 288s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 288s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 288s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 288s python3-sklearn python3-sklearn-lib python3-threadpoolctl 288s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 288s Need to get 29.2 MB/29.2 MB of archives. 288s After this operation, 132 MB of additional disk space will be used. 288s Get:1 /tmp/autopkgtest.a4bIIj/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [728 B] 288s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 288s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-5ubuntu1 [438 kB] 289s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-5ubuntu1 [145 kB] 289s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 290s Get:6 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 290s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3-all arm64 3.12.4-1 [882 B] 290s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 290s Get:9 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 290s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-joblib all 1.3.2-2 [208 kB] 290s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB] 291s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.1-1 [41.4 kB] 291s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 291s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.12.0-2 [15.9 MB] 293s Get:15 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pot arm64 0.9.3+dfsg-2 [209 kB] 293s Get:16 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 293s Get:17 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 293s Get:18 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-3 [3651 kB] 293s Get:19 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 293s Fetched 29.2 MB in 5s (6101 kB/s) 293s Selecting previously unselected package libblas3:arm64. 293s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78396 files and directories currently installed.) 293s Preparing to unpack .../00-libblas3_3.12.0-3build1_arm64.deb ... 293s Unpacking libblas3:arm64 (3.12.0-3build1) ... 293s Selecting previously unselected package libgfortran5:arm64. 293s Preparing to unpack .../01-libgfortran5_14.1.0-5ubuntu1_arm64.deb ... 294s Unpacking libgfortran5:arm64 (14.1.0-5ubuntu1) ... 294s Selecting previously unselected package libgomp1:arm64. 294s Preparing to unpack .../02-libgomp1_14.1.0-5ubuntu1_arm64.deb ... 294s Unpacking libgomp1:arm64 (14.1.0-5ubuntu1) ... 294s Selecting previously unselected package liblapack3:arm64. 294s Preparing to unpack .../03-liblapack3_3.12.0-3build1_arm64.deb ... 294s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 294s Selecting previously unselected package liblbfgsb0:arm64. 294s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 294s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 294s Selecting previously unselected package python3-all. 294s Preparing to unpack .../05-python3-all_3.12.4-1_arm64.deb ... 294s Unpacking python3-all (3.12.4-1) ... 294s Selecting previously unselected package python3-decorator. 294s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 294s Unpacking python3-decorator (5.1.1-5) ... 294s Selecting previously unselected package python3-iniconfig. 294s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 294s Unpacking python3-iniconfig (1.1.1-2) ... 294s Selecting previously unselected package python3-joblib. 294s Preparing to unpack .../08-python3-joblib_1.3.2-2_all.deb ... 294s Unpacking python3-joblib (1.3.2-2) ... 294s Selecting previously unselected package python3-numpy. 294s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ... 294s Unpacking python3-numpy (1:1.26.4+ds-10) ... 294s Selecting previously unselected package python3-packaging. 294s Preparing to unpack .../10-python3-packaging_24.1-1_all.deb ... 294s Unpacking python3-packaging (24.1-1) ... 294s Selecting previously unselected package python3-pluggy. 294s Preparing to unpack .../11-python3-pluggy_1.5.0-1_all.deb ... 294s Unpacking python3-pluggy (1.5.0-1) ... 294s Selecting previously unselected package python3-scipy. 294s Preparing to unpack .../12-python3-scipy_1.12.0-2_arm64.deb ... 294s Unpacking python3-scipy (1.12.0-2) ... 295s Selecting previously unselected package python3-pot. 295s Preparing to unpack .../13-python3-pot_0.9.3+dfsg-2_arm64.deb ... 295s Unpacking python3-pot (0.9.3+dfsg-2) ... 295s Selecting previously unselected package python3-pytest. 295s Preparing to unpack .../14-python3-pytest_7.4.4-1_all.deb ... 295s Unpacking python3-pytest (7.4.4-1) ... 295s Selecting previously unselected package python3-threadpoolctl. 295s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 295s Unpacking python3-threadpoolctl (3.1.0-1) ... 295s Selecting previously unselected package python3-sklearn-lib:arm64. 295s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-3_arm64.deb ... 295s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-3) ... 295s Selecting previously unselected package python3-sklearn. 295s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-3_all.deb ... 295s Unpacking python3-sklearn (1.4.2+dfsg-3) ... 295s Selecting previously unselected package autopkgtest-satdep. 295s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 295s Unpacking autopkgtest-satdep (0) ... 295s Setting up python3-iniconfig (1.1.1-2) ... 296s Setting up python3-joblib (1.3.2-2) ... 296s Setting up python3-threadpoolctl (3.1.0-1) ... 296s Setting up python3-all (3.12.4-1) ... 296s Setting up libgomp1:arm64 (14.1.0-5ubuntu1) ... 296s Setting up python3-decorator (5.1.1-5) ... 296s Setting up libblas3:arm64 (3.12.0-3build1) ... 296s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 296s Setting up python3-packaging (24.1-1) ... 296s Setting up libgfortran5:arm64 (14.1.0-5ubuntu1) ... 296s Setting up python3-pluggy (1.5.0-1) ... 297s Setting up liblapack3:arm64 (3.12.0-3build1) ... 297s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 297s Setting up python3-pytest (7.4.4-1) ... 297s Setting up python3-numpy (1:1.26.4+ds-10) ... 299s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 299s Setting up python3-scipy (1.12.0-2) ... 303s Setting up python3-pot (0.9.3+dfsg-2) ... 303s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:62: SyntaxWarning: invalid escape sequence '\o' 303s """ 303s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:189: SyntaxWarning: invalid escape sequence '\o' 303s """ 303s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-3) ... 303s Setting up python3-sklearn (1.4.2+dfsg-3) ... 305s Setting up autopkgtest-satdep (0) ... 305s Processing triggers for man-db (2.12.1-2) ... 305s Processing triggers for libc-bin (2.39-0ubuntu9) ... 309s (Reading database ... 81986 files and directories currently installed.) 309s Removing autopkgtest-satdep (0) ... 310s autopkgtest [17:29:22]: test upstream.sh: [----------------------- 310s Running tests with Python 3.12. 318s ============================= test session starts ============================== 318s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 318s rootdir: /tmp/autopkgtest.a4bIIj/autopkgtest_tmp 318s collected 586 items 318s 318s test/test_1d_solver.py ...s..s...... [ 2%] 319s test/test_backend.py .......... [ 3%] 324s test/test_bregman.py ......................................sss.......... [ 12%] 329s .....................................ss....ss..ss..s....... [ 22%] 330s test/test_coot.py ......... [ 24%] 331s test/test_da.py .....................s.. [ 28%] 331s test/test_dmmot.py .. [ 28%] 331s test/test_dr.py ssssss [ 29%] 332s test/test_factored.py .. [ 30%] 337s test/test_gaussian.py .................. [ 33%] 337s test/test_gnn.py ssss [ 33%] 347s test/test_gromov.py ....s....x..x..x.............................x...... [ 42%] 348s .. [ 43%] 350s test/test_lowrank.py ........... [ 44%] 350s test/test_mapping.py sss. [ 45%] 352s test/test_optim.py ...... [ 46%] 352s test/test_ot.py ....s..........s.. [ 49%] 354s test/test_partial.py ...... [ 50%] 354s test/test_plot.py ss [ 51%] 355s test/test_regpath.py .. [ 51%] 355s test/test_sliced.py ...........s..s............. [ 56%] 355s test/test_smooth.py ... [ 56%] 358s test/test_solvers.py ........................s.....s.....s.............. [ 65%] 360s ............ssssssss........ssssssss........................ssssssss.... [ 77%] 365s ....ssssssss...ss............. [ 82%] 368s test/test_stochastic.py ......... [ 84%] 372s test/test_unbalanced.py ................................................ [ 92%] 385s ................ [ 95%] 385s test/test_utils.py .......................... [ 99%] 386s test/test_weak.py .. [100%] 386s 386s =============================== warnings summary =============================== 386s test/test_bregman.py: 6 warnings 386s test/test_coot.py: 1 warning 386s test/test_da.py: 4 warnings 386s test/test_gromov.py: 13 warnings 386s test/test_optim.py: 1 warning 386s test/test_partial.py: 1 warning 386s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 386s warnings.warn("Sinkhorn did not converge. You might want to " 386s 386s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 386s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 386s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 386s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 386s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 386s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 386s test/test_bregman.py::test_sinkhorn_warmstart 386s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 386s warnings.warn("Sinkhorn did not converge. You might want to " 386s 386s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 386s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 386s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 386s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 386s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 386s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 386s warnings.warn("Sinkhorn did not converge. You might want to " 386s 386s test/test_bregman.py::test_sinkhorn_empty 386s test/test_bregman.py::test_sinkhorn_variants[numpy] 386s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 386s test/test_bregman.py::test_sinkhorn_variants_log 386s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 386s warnings.warn("Sinkhorn did not converge. You might want to " 386s 386s test/test_coot.py::test_coot[numpy-False] 386s test/test_coot.py::test_coot[numpy-True] 386s test/test_coot.py::test_coot[numpy-1] 386s test/test_coot.py::test_coot[numpy-0] 386s test/test_coot.py::test_coot_warmstart[numpy] 386s test/test_coot.py::test_coot_log[numpy] 386s /usr/lib/python3/dist-packages/ot/lp/__init__.py:354: UserWarning: numItermax reached before optimality. Try to increase numItermax. 386s result_code_string = check_result(result_code) 386s 386s test/test_gromov.py::test_gromov_integer_warnings[numpy] 386s /tmp/autopkgtest.a4bIIj/autopkgtest_tmp/test/test_gromov.py:145: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 386s G = ot.gromov.gromov_wasserstein( 386s 386s test/test_gromov.py::test_gromov_integer_warnings[numpy] 386s /tmp/autopkgtest.a4bIIj/autopkgtest_tmp/test/test_gromov.py:148: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 386s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 386s 386s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 386s /usr/lib/python3/dist-packages/ot/backend.py:1143: RuntimeWarning: divide by zero encountered in log 386s return np.log(a) 386s 386s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 386s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 386s v = b / KtransposeU 386s 386s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 386s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 386s v = b / KtransposeU 386s 386s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 386s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 386s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 386s warnings.warn('Warning: numerical errors at iteration %d' % ii) 386s 386s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 386s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1045: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 386s warnings.warn("Solver failed to produce a transport plan. You might " 386s 386s test/test_gromov.py::test_pointwise_gromov[numpy] 386s test/test_gromov.py::test_pointwise_gromov[numpy] 386s test/test_gromov.py::test_pointwise_gromov[numpy] 386s test/test_gromov.py::test_pointwise_gromov[numpy] 386s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 386s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 386s 386s test/test_gromov.py::test_pointwise_gromov[numpy] 386s test/test_gromov.py::test_pointwise_gromov[numpy] 386s test/test_gromov.py::test_pointwise_gromov[numpy] 386s test/test_gromov.py::test_pointwise_gromov[numpy] 386s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 386s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 386s 386s test/test_gromov.py: 400 warnings 386s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 386s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 386s 386s test/test_gromov.py: 400 warnings 386s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 386s index[1] = generator.choice( 386s 386s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 386s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 386s warnings.warn("Solver failed to produce a transport plan. You might " 386s 386s test/test_gromov.py::test_fgw_integer_warnings[numpy] 386s /tmp/autopkgtest.a4bIIj/autopkgtest_tmp/test/test_gromov.py:1580: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 386s G, log = ot.gromov.fused_gromov_wasserstein( 386s 386s test/test_gromov.py::test_fgw_integer_warnings[numpy] 386s /tmp/autopkgtest.a4bIIj/autopkgtest_tmp/test/test_gromov.py:1583: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 386s Gb, logb = ot.gromov.fused_gromov_wasserstein( 386s 386s test/test_regpath.py: 232 warnings 386s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 386s M[-1, -1] = 1 / s 386s 386s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 386s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: divide by zero encountered in divide 386s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 386s 386s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 386s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: invalid value encountered in divide 386s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 386s 386s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 386s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 386s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 386s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 386s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 386s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 386s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 386s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 386s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 386s 386s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 386s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 386s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 386s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 386s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 386s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 386s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 386s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 386s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 386s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 386s 386s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 386s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 386s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 386s v = (b / Ktu) ** fi_2 386s 386s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 386s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 386s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 386s warnings.warn('Numerical errors at iteration %s' % i) 386s 386s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 386s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 386s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 386s 386s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 386s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 386s warnings.warn("The div parameter should be either equal to 'kl' or \ 386s 386s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 386s ===== 512 passed, 70 skipped, 4 xfailed, 1122 warnings in 68.11s (0:01:08) ===== 390s ********** 392s autopkgtest [17:30:44]: test upstream.sh: -----------------------] 395s upstream.sh PASS 395s autopkgtest [17:30:47]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 397s autopkgtest [17:30:49]: @@@@@@@@@@@@@@@@@@@@ summary 397s upstream.sh PASS 409s nova [W] Skipping flock in bos03-arm64 409s Creating nova instance adt-oracular-arm64-python-pot-20240723-172411-juju-7f2275-prod-proposed-migration-environment-2-10e51734-34ce-473b-9ce1-d7f8acfb9072 from image adt/ubuntu-oracular-arm64-server-20240721.img (UUID 82bde252-f2f6-4a5f-8912-308e3b0a85c9)...