0s autopkgtest [13:10:05]: starting date and time: 2024-06-08 13:10:05+0000 0s autopkgtest [13:10:05]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [13:10:05]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kjfqy79m/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-25.secgroup --name adt-oracular-arm64-python-pot-20240608-131005-juju-7f2275-prod-proposed-migration-environment-3-3c9b24b5-1ea0-4d6d-bdf7-9ccbb5143c5f --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 105s autopkgtest [13:11:50]: testbed dpkg architecture: arm64 105s autopkgtest [13:11:50]: testbed apt version: 2.9.3 105s autopkgtest [13:11:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 106s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 106s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2420 B] 107s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [338 kB] 107s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.2 kB] 107s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 107s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [67.9 kB] 107s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [31.8 kB] 107s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [306 kB] 107s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [9556 B] 107s Fetched 918 kB in 1s (767 kB/s) 107s Reading package lists... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s Calculating upgrade... 111s The following packages will be upgraded: 111s bash 112s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Need to get 781 kB of archives. 112s After this operation, 0 B of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 bash arm64 5.2.21-2.1ubuntu1 [781 kB] 114s Fetched 781 kB in 1s (1247 kB/s) 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78200 files and directories currently installed.) 114s Preparing to unpack .../bash_5.2.21-2.1ubuntu1_arm64.deb ... 114s Unpacking bash (5.2.21-2.1ubuntu1) over (5.2.21-2ubuntu5) ... 114s Setting up bash (5.2.21-2.1ubuntu1) ... 114s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 114s Processing triggers for debianutils (5.18) ... 115s Processing triggers for install-info (7.1-3build2) ... 115s Processing triggers for man-db (2.12.1-1) ... 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 120s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 120s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 120s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 121s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Calculating upgrade... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s autopkgtest [13:12:16]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 131s autopkgtest [13:12:16]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 134s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (dsc) [2114 B] 134s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (tar) [877 kB] 134s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (diff) [4524 B] 134s gpgv: Signature made Thu Apr 18 12:47:08 2024 UTC 134s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 134s gpgv: issuer "gspr@nonempty.org" 134s gpgv: Can't check signature: No public key 134s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.3+dfsg-2.dsc: no acceptable signature found 134s autopkgtest [13:12:19]: testing package python-pot version 0.9.3+dfsg-2 135s autopkgtest [13:12:20]: build not needed 135s autopkgtest [13:12:20]: test upstream.sh: preparing testbed 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Starting pkgProblemResolver with broken count: 0 137s Starting 2 pkgProblemResolver with broken count: 0 137s Done 138s The following additional packages will be installed: 138s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 138s python3-decorator python3-iniconfig python3-joblib python3-numpy 138s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 138s python3-sklearn python3-sklearn-lib python3-threadpoolctl 138s Suggested packages: 138s gcc gfortran python-numpy-doc python3-dev python-scipy-doc python3-dap 138s python-sklearn-doc ipython3 138s Recommended packages: 138s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 138s python3-matplotlib 138s The following NEW packages will be installed: 138s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 138s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 138s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 138s python3-sklearn python3-sklearn-lib python3-threadpoolctl 138s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 138s Need to get 28.2 MB/28.2 MB of archives. 138s After this operation, 127 MB of additional disk space will be used. 138s Get:1 /tmp/autopkgtest.DsLJHM/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 138s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 138s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB] 139s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB] 139s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 139s Get:6 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 139s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-all arm64 3.12.3-0ubuntu1 [888 B] 139s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 139s Get:9 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 139s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-joblib all 1.3.2-2 [208 kB] 139s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB] 139s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.0-1 [41.1 kB] 139s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 139s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.11.4-10 [15.0 MB] 139s Get:15 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pot arm64 0.9.3+dfsg-2 [209 kB] 139s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 python3-pytest all 8.2.2-1ubuntu1 [250 kB] 139s Get:17 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 139s Get:18 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-1 [3656 kB] 139s Get:19 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn all 1.4.2+dfsg-1 [2261 kB] 140s Fetched 28.2 MB in 1s (19.7 MB/s) 140s Selecting previously unselected package libblas3:arm64. 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78200 files and directories currently installed.) 140s Preparing to unpack .../00-libblas3_3.12.0-3build1_arm64.deb ... 140s Unpacking libblas3:arm64 (3.12.0-3build1) ... 140s Selecting previously unselected package libgfortran5:arm64. 140s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_arm64.deb ... 140s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ... 140s Selecting previously unselected package libgomp1:arm64. 140s Preparing to unpack .../02-libgomp1_14.1.0-1ubuntu1_arm64.deb ... 140s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ... 141s Selecting previously unselected package liblapack3:arm64. 141s Preparing to unpack .../03-liblapack3_3.12.0-3build1_arm64.deb ... 141s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 141s Selecting previously unselected package liblbfgsb0:arm64. 141s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 141s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 141s Selecting previously unselected package python3-all. 141s Preparing to unpack .../05-python3-all_3.12.3-0ubuntu1_arm64.deb ... 141s Unpacking python3-all (3.12.3-0ubuntu1) ... 141s Selecting previously unselected package python3-decorator. 141s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 141s Unpacking python3-decorator (5.1.1-5) ... 141s Selecting previously unselected package python3-iniconfig. 141s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 141s Unpacking python3-iniconfig (1.1.1-2) ... 141s Selecting previously unselected package python3-joblib. 141s Preparing to unpack .../08-python3-joblib_1.3.2-2_all.deb ... 141s Unpacking python3-joblib (1.3.2-2) ... 141s Selecting previously unselected package python3-numpy. 141s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ... 141s Unpacking python3-numpy (1:1.26.4+ds-10) ... 141s Selecting previously unselected package python3-packaging. 141s Preparing to unpack .../10-python3-packaging_24.0-1_all.deb ... 141s Unpacking python3-packaging (24.0-1) ... 141s Selecting previously unselected package python3-pluggy. 141s Preparing to unpack .../11-python3-pluggy_1.5.0-1_all.deb ... 141s Unpacking python3-pluggy (1.5.0-1) ... 142s Selecting previously unselected package python3-scipy. 142s Preparing to unpack .../12-python3-scipy_1.11.4-10_arm64.deb ... 142s Unpacking python3-scipy (1.11.4-10) ... 143s Selecting previously unselected package python3-pot. 143s Preparing to unpack .../13-python3-pot_0.9.3+dfsg-2_arm64.deb ... 143s Unpacking python3-pot (0.9.3+dfsg-2) ... 143s Selecting previously unselected package python3-pytest. 143s Preparing to unpack .../14-python3-pytest_8.2.2-1ubuntu1_all.deb ... 143s Unpacking python3-pytest (8.2.2-1ubuntu1) ... 143s Selecting previously unselected package python3-threadpoolctl. 143s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 143s Unpacking python3-threadpoolctl (3.1.0-1) ... 143s Selecting previously unselected package python3-sklearn-lib:arm64. 143s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-1_arm64.deb ... 143s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-1) ... 143s Selecting previously unselected package python3-sklearn. 143s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-1_all.deb ... 143s Unpacking python3-sklearn (1.4.2+dfsg-1) ... 143s Selecting previously unselected package autopkgtest-satdep. 144s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 144s Unpacking autopkgtest-satdep (0) ... 144s Setting up python3-iniconfig (1.1.1-2) ... 144s Setting up python3-joblib (1.3.2-2) ... 144s Setting up python3-threadpoolctl (3.1.0-1) ... 144s Setting up python3-all (3.12.3-0ubuntu1) ... 144s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ... 144s Setting up python3-decorator (5.1.1-5) ... 144s Setting up libblas3:arm64 (3.12.0-3build1) ... 144s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 144s Setting up python3-packaging (24.0-1) ... 145s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ... 145s Setting up python3-pluggy (1.5.0-1) ... 145s Setting up liblapack3:arm64 (3.12.0-3build1) ... 145s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 145s Setting up python3-pytest (8.2.2-1ubuntu1) ... 145s Setting up python3-numpy (1:1.26.4+ds-10) ... 147s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 147s Setting up python3-scipy (1.11.4-10) ... 151s Setting up python3-pot (0.9.3+dfsg-2) ... 151s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:62: SyntaxWarning: invalid escape sequence '\o' 151s """ 151s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:189: SyntaxWarning: invalid escape sequence '\o' 151s """ 151s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-1) ... 151s Setting up python3-sklearn (1.4.2+dfsg-1) ... 154s Setting up autopkgtest-satdep (0) ... 154s Processing triggers for man-db (2.12.1-1) ... 154s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 160s (Reading database ... 81742 files and directories currently installed.) 160s Removing autopkgtest-satdep (0) ... 161s autopkgtest [13:12:46]: test upstream.sh: [----------------------- 162s Running tests with Python 3.12. 168s ============================= test session starts ============================== 168s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 168s rootdir: /tmp/autopkgtest.DsLJHM/autopkgtest_tmp 168s collected 586 items 168s 168s test/test_1d_solver.py ...s..s...... [ 2%] 168s test/test_backend.py .......... [ 3%] 174s test/test_bregman.py ......................................sss.......... [ 12%] 179s .....................................ss....ss..ss..s....... [ 22%] 180s test/test_coot.py ......... [ 24%] 182s test/test_da.py .....................s.. [ 28%] 182s test/test_dmmot.py .. [ 28%] 182s test/test_dr.py ssssss [ 29%] 182s test/test_factored.py .. [ 30%] 187s test/test_gaussian.py .................. [ 33%] 187s test/test_gnn.py ssss [ 33%] 196s test/test_gromov.py ....s....x..x..x.............................x...... [ 42%] 197s .. [ 43%] 200s test/test_lowrank.py ........... [ 44%] 200s test/test_mapping.py sss. [ 45%] 201s test/test_optim.py ...... [ 46%] 201s test/test_ot.py ....s..........s.. [ 49%] 203s test/test_partial.py ...... [ 50%] 203s test/test_plot.py ss [ 51%] 204s test/test_regpath.py .. [ 51%] 204s test/test_sliced.py ...........s..s............. [ 56%] 204s test/test_smooth.py ... [ 56%] 207s test/test_solvers.py ........................s.....s.....s.............. [ 65%] 209s ............ssssssss........ssssssss........................ssssssss.... [ 77%] 213s ....ssssssss...ss............. [ 82%] 216s test/test_stochastic.py ......... [ 84%] 219s test/test_unbalanced.py ................................................ [ 92%] 231s ................ [ 95%] 231s test/test_utils.py .......................... [ 99%] 231s test/test_weak.py .. [100%] 231s 231s =============================== warnings summary =============================== 231s test/test_bregman.py::test_nan_warning[sinkhorn] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: divide by zero encountered in divide 231s K = nx.exp(M / (-reg)) 231s 231s test/test_bregman.py::test_nan_warning[sinkhorn] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: invalid value encountered in divide 231s K = nx.exp(M / (-reg)) 231s 231s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: divide by zero encountered in divide 231s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 231s 231s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: invalid value encountered in divide 231s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 231s 231s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 231s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: divide by zero encountered in divide 231s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 231s 231s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 231s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: invalid value encountered in divide 231s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 231s 231s test/test_bregman.py: 6 warnings 231s test/test_coot.py: 1 warning 231s test/test_da.py: 5 warnings 231s test/test_gromov.py: 13 warnings 231s test/test_optim.py: 1 warning 231s test/test_partial.py: 1 warning 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 231s warnings.warn("Sinkhorn did not converge. You might want to " 231s 231s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 231s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 231s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 231s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 231s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 231s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 231s test/test_bregman.py::test_sinkhorn_warmstart 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 231s warnings.warn("Sinkhorn did not converge. You might want to " 231s 231s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 231s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 231s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 231s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 231s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 231s warnings.warn("Sinkhorn did not converge. You might want to " 231s 231s test/test_bregman.py::test_sinkhorn_empty 231s test/test_bregman.py::test_sinkhorn_variants[numpy] 231s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 231s test/test_bregman.py::test_sinkhorn_variants_log 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 231s warnings.warn("Sinkhorn did not converge. You might want to " 231s 231s test/test_coot.py::test_coot[numpy-False] 231s test/test_coot.py::test_coot[numpy-True] 231s test/test_coot.py::test_coot[numpy-1] 231s test/test_coot.py::test_coot[numpy-0] 231s test/test_coot.py::test_coot_warmstart[numpy] 231s test/test_coot.py::test_coot_log[numpy] 231s /usr/lib/python3/dist-packages/ot/lp/__init__.py:354: UserWarning: numItermax reached before optimality. Try to increase numItermax. 231s result_code_string = check_result(result_code) 231s 231s test/test_gromov.py::test_gromov_integer_warnings[numpy] 231s /tmp/autopkgtest.DsLJHM/autopkgtest_tmp/test/test_gromov.py:145: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 231s G = ot.gromov.gromov_wasserstein( 231s 231s test/test_gromov.py::test_gromov_integer_warnings[numpy] 231s /tmp/autopkgtest.DsLJHM/autopkgtest_tmp/test/test_gromov.py:148: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 231s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 231s 231s test/test_gromov.py::test_BAPG_gromov[numpy] 231s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:507: RuntimeWarning: divide by zero encountered in divide 231s column_scaling = q / nx.sum(T, 0) 231s 231s test/test_gromov.py::test_BAPG_gromov[numpy] 231s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:508: RuntimeWarning: invalid value encountered in multiply 231s T = nx.reshape(column_scaling, (1, -1)) * T 231s 231s test/test_gromov.py::test_BAPG_fgw[numpy] 231s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1352: RuntimeWarning: divide by zero encountered in divide 231s row_scaling = p / nx.sum(T, 1) 231s 231s test/test_gromov.py::test_BAPG_fgw[numpy] 231s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1353: RuntimeWarning: invalid value encountered in multiply 231s T = nx.reshape(row_scaling, (-1, 1)) * T 231s 231s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 231s /usr/lib/python3/dist-packages/ot/backend.py:1143: RuntimeWarning: divide by zero encountered in log 231s return np.log(a) 231s 231s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 231s v = b / KtransposeU 231s 231s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 231s v = b / KtransposeU 231s 231s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 231s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 231s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 231s warnings.warn('Warning: numerical errors at iteration %d' % ii) 231s 231s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 231s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1045: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 231s warnings.warn("Solver failed to produce a transport plan. You might " 231s 231s test/test_gromov.py::test_pointwise_gromov[numpy] 231s test/test_gromov.py::test_pointwise_gromov[numpy] 231s test/test_gromov.py::test_pointwise_gromov[numpy] 231s test/test_gromov.py::test_pointwise_gromov[numpy] 231s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 231s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 231s 231s test/test_gromov.py::test_pointwise_gromov[numpy] 231s test/test_gromov.py::test_pointwise_gromov[numpy] 231s test/test_gromov.py::test_pointwise_gromov[numpy] 231s test/test_gromov.py::test_pointwise_gromov[numpy] 231s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 231s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 231s 231s test/test_gromov.py: 400 warnings 231s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 231s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 231s 231s test/test_gromov.py: 400 warnings 231s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 231s index[1] = generator.choice( 231s 231s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 231s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 231s warnings.warn("Solver failed to produce a transport plan. You might " 231s 231s test/test_gromov.py::test_fgw_integer_warnings[numpy] 231s /tmp/autopkgtest.DsLJHM/autopkgtest_tmp/test/test_gromov.py:1580: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 231s G, log = ot.gromov.fused_gromov_wasserstein( 231s 231s test/test_gromov.py::test_fgw_integer_warnings[numpy] 231s /tmp/autopkgtest.DsLJHM/autopkgtest_tmp/test/test_gromov.py:1583: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 231s Gb, logb = ot.gromov.fused_gromov_wasserstein( 231s 231s test/test_regpath.py: 232 warnings 231s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 231s M[-1, -1] = 1 / s 231s 231s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 231s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: divide by zero encountered in divide 231s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 231s 231s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 231s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: invalid value encountered in divide 231s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 231s 231s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 231s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 231s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 231s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 231s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 231s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 231s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 231s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 231s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 231s 231s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 231s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 231s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 231s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 231s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 231s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 231s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 231s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 231s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 231s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 231s 231s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 231s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 231s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 231s v = (b / Ktu) ** fi_2 231s 231s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 231s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 231s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 231s warnings.warn('Numerical errors at iteration %s' % i) 231s 231s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 231s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 231s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 231s 231s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 231s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 231s warnings.warn("The div parameter should be either equal to 'kl' or \ 231s 231s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 231s ===== 512 passed, 70 skipped, 4 xfailed, 1135 warnings in 64.14s (0:01:04) ===== 232s ********** 233s autopkgtest [13:13:58]: test upstream.sh: -----------------------] 234s upstream.sh PASS 234s autopkgtest [13:13:59]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 234s autopkgtest [13:13:59]: @@@@@@@@@@@@@@@@@@@@ summary 234s upstream.sh PASS 245s nova [W] Skipping flock in bos03-arm64 245s Creating nova instance adt-oracular-arm64-python-pot-20240608-131005-juju-7f2275-prod-proposed-migration-environment-3-3c9b24b5-1ea0-4d6d-bdf7-9ccbb5143c5f from image adt/ubuntu-oracular-arm64-server-20240608.img (UUID 22fa5d69-8269-442f-bb5d-fd1454f7b08f)...