0s autopkgtest [13:08:46]: starting date and time: 2024-06-08 13:08:46+0000
  0s autopkgtest [13:08:46]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod'
  0s autopkgtest [13:08:46]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.clm9carl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade python-periodictable --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-53.secgroup --name adt-oracular-arm64-python-periodictable-20240608-130845-juju-7f2275-prod-proposed-migration-environment-3-754fc0e6-bb39-4123-b679-95f488e8dc8c --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
804s autopkgtest [13:22:10]: testbed dpkg architecture: arm64
804s autopkgtest [13:22:10]: testbed apt version: 2.9.3
804s autopkgtest [13:22:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup
805s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB]
806s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [338 kB]
806s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2420 B]
806s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B]
806s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.2 kB]
806s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [67.9 kB]
806s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [31.8 kB]
806s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [306 kB]
806s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [9556 B]
806s Fetched 918 kB in 2s (490 kB/s)
806s Reading package lists...
809s Reading package lists...
810s Building dependency tree...
810s Reading state information...
810s Calculating upgrade...
810s The following packages will be upgraded:
810s   bash
811s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
811s Need to get 781 kB of archives.
811s After this operation, 0 B of additional disk space will be used.
811s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 bash arm64 5.2.21-2.1ubuntu1 [781 kB]
812s Fetched 781 kB in 1s (1309 kB/s)
812s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78200 files and directories currently installed.)
812s Preparing to unpack .../bash_5.2.21-2.1ubuntu1_arm64.deb ...
812s Unpacking bash (5.2.21-2.1ubuntu1) over (5.2.21-2ubuntu5) ...
813s Setting up bash (5.2.21-2.1ubuntu1) ...
813s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
813s Processing triggers for debianutils (5.18) ...
813s Processing triggers for install-info (7.1-3build2) ...
813s Processing triggers for man-db (2.12.1-1) ...
814s Reading package lists...
814s Building dependency tree...
814s Reading state information...
815s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
816s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease
816s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease
816s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease
816s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
817s Reading package lists...
817s Reading package lists...
817s Building dependency tree...
817s Reading state information...
818s Calculating upgrade...
818s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
819s Reading package lists...
819s Building dependency tree...
819s Reading state information...
819s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
823s autopkgtest [13:22:29]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024
823s autopkgtest [13:22:29]: @@@@@@@@@@@@@@@@@@@@ apt-source python-periodictable
828s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-periodictable 1.7.0-1 (dsc) [2449 B]
828s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-periodictable 1.7.0-1 (tar) [869 kB]
828s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-periodictable 1.7.0-1 (diff) [6040 B]
828s gpgv: Signature made Sun May  5 01:46:40 2024 UTC
828s gpgv:                using RSA key 90E2D2C1AD146A1B7EBB891DBBC17EBB1396F2F7
828s gpgv: Can't check signature: No public key
828s dpkg-source: warning: cannot verify inline signature for ./python-periodictable_1.7.0-1.dsc: no acceptable signature found
829s autopkgtest [13:22:35]: testing package python-periodictable version 1.7.0-1
829s autopkgtest [13:22:35]: build not needed
830s autopkgtest [13:22:36]: test python3-periodictable: preparing testbed
831s Reading package lists...
831s Building dependency tree...
831s Reading state information...
831s Starting pkgProblemResolver with broken count: 0
832s Starting 2 pkgProblemResolver with broken count: 0
832s Done
832s The following additional packages will be installed:
832s   blt docutils-common fonts-lyx libblas3 libgfortran5 libgomp1 libgraphite2-3
832s   libharfbuzz0b libimagequant0 libjs-jquery libjs-jquery-ui liblapack3
832s   liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0 libraqm0 libtcl8.6 libtk8.6
832s   libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1
832s   python-matplotlib-data python3-all python3-appdirs python3-brotli
832s   python3-contourpy python3-cycler python3-dateutil python3-decorator
832s   python3-docutils python3-fonttools python3-fs python3-iniconfig
832s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
832s   python3-mpmath python3-numpy python3-packaging python3-periodictable
832s   python3-pil python3-pil.imagetk python3-pluggy python3-pytest python3-roman
832s   python3-scipy python3-sympy python3-tk python3-ufolib2 sgml-base
832s   tk8.6-blt2.5 unicode-data x11-common xml-core
832s Suggested packages:
832s   blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc
832s   docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
832s   texlive-latex-base texlive-latex-recommended python-lxml-doc
832s   cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0
832s   inkscape ipython3 librsvg2-common python3-cairocffi python3-gi-cairo
832s   python3-gobject python3-pyqt5 python3-sip python3-tornado
832s   texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc
832s   gfortran python-numpy-doc python3-dev python-periodictable-doc
832s   python-pil-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix
832s   python3-tk-dbg sgml-base-doc debhelper
832s Recommended packages:
832s   javascript-common libpaper-utils python3-bs4 python3-cssselect
832s   python3-html5lib python3-olefile g++ | c++-compiler isympy-common
832s The following NEW packages will be installed:
832s   autopkgtest-satdep blt docutils-common fonts-lyx libblas3 libgfortran5
832s   libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjs-jquery
832s   libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0
832s   libraqm0 libtcl8.6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2 libxrender1
832s   libxslt1.1 libxss1 python-matplotlib-data python3-all python3-appdirs
832s   python3-brotli python3-contourpy python3-cycler python3-dateutil
832s   python3-decorator python3-docutils python3-fonttools python3-fs
832s   python3-iniconfig python3-kiwisolver python3-lxml python3-lz4
832s   python3-matplotlib python3-mpmath python3-numpy python3-packaging
832s   python3-periodictable python3-pil python3-pil.imagetk python3-pluggy
832s   python3-pytest python3-roman python3-scipy python3-sympy python3-tk
832s   python3-ufolib2 sgml-base tk8.6-blt2.5 unicode-data x11-common xml-core
832s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded.
832s Need to get 53.5 MB/53.5 MB of archives.
832s After this operation, 230 MB of additional disk space will be used.
832s Get:1 /tmp/autopkgtest.0LFluH/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [744 B]
833s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 sgml-base all 1.31 [11.4 kB]
833s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB]
833s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
833s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
833s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
833s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
833s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB]
833s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB]
833s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B]
833s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 xml-core all 0.19 [20.3 kB]
833s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 docutils-common all 0.20.1+dfsg-3 [132 kB]
833s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-lyx all 2.4.0-1 [171 kB]
833s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB]
833s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB]
833s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB]
833s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2build1 [70.8 kB]
833s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB]
833s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB]
833s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
833s Get:21 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
833s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB]
833s Get:23 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
833s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB]
833s Get:25 http://ftpmaster.internal/ubuntu oracular/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
833s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB]
833s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB]
833s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB]
833s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 libxslt1.1 arm64 1.1.39-0exp1build1 [166 kB]
833s Get:30 http://ftpmaster.internal/ubuntu oracular/universe arm64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB]
833s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-all arm64 3.12.3-0ubuntu1 [888 B]
833s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB]
833s Get:33 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB]
833s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB]
833s Get:35 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-contourpy arm64 1.0.7-3 [163 kB]
833s Get:36 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cycler all 0.12.1-1 [9716 B]
833s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB]
833s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
833s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-roman all 3.3-3 [9632 B]
834s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-docutils all 0.20.1+dfsg-3 [393 kB]
834s Get:41 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.11.4-10 [15.0 MB]
834s Get:42 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
834s Get:43 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-mpmath all 1.3.0-1 [425 kB]
834s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sympy all 1.12-8 [3966 kB]
834s Get:45 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fs all 2.4.16-4 [91.3 kB]
834s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-lxml arm64 5.2.1-1 [1179 kB]
834s Get:47 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB]
834s Get:48 http://ftpmaster.internal/ubuntu oracular/universe arm64 unicode-data all 15.1.0-1 [8878 kB]
834s Get:49 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB]
834s Get:50 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
834s Get:51 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-kiwisolver arm64 1.4.5-1 [48.9 kB]
834s Get:52 http://ftpmaster.internal/ubuntu oracular/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB]
834s Get:53 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-pil arm64 10.3.0-2 [446 kB]
834s Get:54 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-tk arm64 3.12.3-0ubuntu1 [102 kB]
834s Get:55 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pil.imagetk arm64 10.3.0-2 [9268 B]
834s Get:56 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.0-1 [41.1 kB]
834s Get:57 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-matplotlib arm64 3.6.3-2ubuntu1 [5963 kB]
834s Get:58 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-periodictable all 1.7.0-1 [481 kB]
834s Get:59 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
834s Get:60 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 python3-pytest all 8.2.2-1ubuntu1 [250 kB]
835s Fetched 53.5 MB in 2s (26.1 MB/s)
835s Selecting previously unselected package sgml-base.
835s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78200 files and directories currently installed.)
835s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
835s Unpacking sgml-base (1.31) ...
835s Selecting previously unselected package libtcl8.6:arm64.
835s Preparing to unpack .../01-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ...
835s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ...
835s Selecting previously unselected package libxrender1:arm64.
835s Preparing to unpack .../02-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
835s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
835s Selecting previously unselected package libxft2:arm64.
835s Preparing to unpack .../03-libxft2_2.3.6-1build1_arm64.deb ...
835s Unpacking libxft2:arm64 (2.3.6-1build1) ...
836s Selecting previously unselected package x11-common.
836s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ...
836s Unpacking x11-common (1:7.7+23ubuntu3) ...
836s Selecting previously unselected package libxss1:arm64.
836s Preparing to unpack .../05-libxss1_1%3a1.2.3-1build3_arm64.deb ...
836s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
836s Selecting previously unselected package libtk8.6:arm64.
836s Preparing to unpack .../06-libtk8.6_8.6.14-1build1_arm64.deb ...
836s Unpacking libtk8.6:arm64 (8.6.14-1build1) ...
836s Selecting previously unselected package tk8.6-blt2.5.
836s Preparing to unpack .../07-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ...
836s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
836s Selecting previously unselected package blt.
836s Preparing to unpack .../08-blt_2.5.3+dfsg-7build1_arm64.deb ...
836s Unpacking blt (2.5.3+dfsg-7build1) ...
836s Selecting previously unselected package xml-core.
836s Preparing to unpack .../09-xml-core_0.19_all.deb ...
836s Unpacking xml-core (0.19) ...
836s Selecting previously unselected package docutils-common.
836s Preparing to unpack .../10-docutils-common_0.20.1+dfsg-3_all.deb ...
836s Unpacking docutils-common (0.20.1+dfsg-3) ...
836s Selecting previously unselected package fonts-lyx.
836s Preparing to unpack .../11-fonts-lyx_2.4.0-1_all.deb ...
836s Unpacking fonts-lyx (2.4.0-1) ...
836s Selecting previously unselected package libblas3:arm64.
836s Preparing to unpack .../12-libblas3_3.12.0-3build1_arm64.deb ...
836s Unpacking libblas3:arm64 (3.12.0-3build1) ...
836s Selecting previously unselected package libgfortran5:arm64.
836s Preparing to unpack .../13-libgfortran5_14.1.0-1ubuntu1_arm64.deb ...
836s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ...
836s Selecting previously unselected package libgomp1:arm64.
836s Preparing to unpack .../14-libgomp1_14.1.0-1ubuntu1_arm64.deb ...
836s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ...
836s Selecting previously unselected package libgraphite2-3:arm64.
836s Preparing to unpack .../15-libgraphite2-3_1.3.14-2build1_arm64.deb ...
836s Unpacking libgraphite2-3:arm64 (1.3.14-2build1) ...
836s Selecting previously unselected package libharfbuzz0b:arm64.
836s Preparing to unpack .../16-libharfbuzz0b_8.3.0-2build2_arm64.deb ...
836s Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ...
836s Selecting previously unselected package libimagequant0:arm64.
836s Preparing to unpack .../17-libimagequant0_2.18.0-1build1_arm64.deb ...
836s Unpacking libimagequant0:arm64 (2.18.0-1build1) ...
836s Selecting previously unselected package libjs-jquery.
836s Preparing to unpack .../18-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
836s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
836s Selecting previously unselected package libjs-jquery-ui.
836s Preparing to unpack .../19-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
836s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
837s Selecting previously unselected package liblapack3:arm64.
837s Preparing to unpack .../20-liblapack3_3.12.0-3build1_arm64.deb ...
837s Unpacking liblapack3:arm64 (3.12.0-3build1) ...
837s Selecting previously unselected package liblbfgsb0:arm64.
837s Preparing to unpack .../21-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
837s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
837s Selecting previously unselected package liblcms2-2:arm64.
837s Preparing to unpack .../22-liblcms2-2_2.14-2build1_arm64.deb ...
837s Unpacking liblcms2-2:arm64 (2.14-2build1) ...
837s Selecting previously unselected package libqhull-r8.0:arm64.
837s Preparing to unpack .../23-libqhull-r8.0_2020.2-6build1_arm64.deb ...
837s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ...
837s Selecting previously unselected package libraqm0:arm64.
837s Preparing to unpack .../24-libraqm0_0.10.1-1build1_arm64.deb ...
837s Unpacking libraqm0:arm64 (0.10.1-1build1) ...
837s Selecting previously unselected package libwebpdemux2:arm64.
837s Preparing to unpack .../25-libwebpdemux2_1.4.0-0.1_arm64.deb ...
837s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ...
837s Selecting previously unselected package libwebpmux3:arm64.
837s Preparing to unpack .../26-libwebpmux3_1.4.0-0.1_arm64.deb ...
837s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ...
837s Selecting previously unselected package libxslt1.1:arm64.
837s Preparing to unpack .../27-libxslt1.1_1.1.39-0exp1build1_arm64.deb ...
837s Unpacking libxslt1.1:arm64 (1.1.39-0exp1build1) ...
837s Selecting previously unselected package python-matplotlib-data.
837s Preparing to unpack .../28-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ...
837s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ...
837s Selecting previously unselected package python3-all.
837s Preparing to unpack .../29-python3-all_3.12.3-0ubuntu1_arm64.deb ...
837s Unpacking python3-all (3.12.3-0ubuntu1) ...
837s Selecting previously unselected package python3-appdirs.
837s Preparing to unpack .../30-python3-appdirs_1.4.4-4_all.deb ...
837s Unpacking python3-appdirs (1.4.4-4) ...
837s Selecting previously unselected package python3-brotli.
837s Preparing to unpack .../31-python3-brotli_1.1.0-2build2_arm64.deb ...
837s Unpacking python3-brotli (1.1.0-2build2) ...
837s Selecting previously unselected package python3-numpy.
837s Preparing to unpack .../32-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ...
837s Unpacking python3-numpy (1:1.26.4+ds-10) ...
837s Selecting previously unselected package python3-contourpy.
837s Preparing to unpack .../33-python3-contourpy_1.0.7-3_arm64.deb ...
837s Unpacking python3-contourpy (1.0.7-3) ...
837s Selecting previously unselected package python3-cycler.
837s Preparing to unpack .../34-python3-cycler_0.12.1-1_all.deb ...
837s Unpacking python3-cycler (0.12.1-1) ...
837s Selecting previously unselected package python3-dateutil.
837s Preparing to unpack .../35-python3-dateutil_2.9.0-2_all.deb ...
837s Unpacking python3-dateutil (2.9.0-2) ...
837s Selecting previously unselected package python3-decorator.
837s Preparing to unpack .../36-python3-decorator_5.1.1-5_all.deb ...
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837s Selecting previously unselected package python3-roman.
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837s Selecting previously unselected package python3-docutils.
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838s Selecting previously unselected package python3-scipy.
838s Preparing to unpack .../39-python3-scipy_1.11.4-10_arm64.deb ...
838s Unpacking python3-scipy (1.11.4-10) ...
838s Selecting previously unselected package python3-ufolib2.
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838s Selecting previously unselected package python3-mpmath.
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838s Selecting previously unselected package python3-sympy.
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838s Unpacking python3-sympy (1.12-8) ...
838s Selecting previously unselected package python3-fs.
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838s Unpacking python3-fs (2.4.16-4) ...
838s Selecting previously unselected package python3-lxml:arm64.
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838s Unpacking python3-lxml:arm64 (5.2.1-1) ...
838s Selecting previously unselected package python3-lz4.
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838s Selecting previously unselected package unicode-data.
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839s Selecting previously unselected package python3-iniconfig.
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840s Selecting previously unselected package libopenjp2-7:arm64.
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841s Selecting previously unselected package python3-matplotlib.
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841s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ...
841s Selecting previously unselected package python3-periodictable.
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841s Selecting previously unselected package python3-pytest.
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841s Selecting previously unselected package autopkgtest-satdep.
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841s Unpacking autopkgtest-satdep (0) ...
841s Setting up libgraphite2-3:arm64 (1.3.14-2build1) ...
841s Setting up liblcms2-2:arm64 (2.14-2build1) ...
841s Setting up python3-iniconfig (1.1.1-2) ...
841s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
841s Setting up python3-lz4 (4.0.2+dfsg-1build4) ...
841s Setting up fonts-lyx (2.4.0-1) ...
841s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ...
841s Setting up x11-common (1:7.7+23ubuntu3) ...
842s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ...
842s Setting up python3-all (3.12.3-0ubuntu1) ...
842s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ...
842s Setting up unicode-data (15.1.0-1) ...
842s Setting up python3-roman (3.3-3) ...
842s Setting up python3-decorator (5.1.1-5) ...
842s Setting up libblas3:arm64 (3.12.0-3build1) ...
842s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
842s Setting up python3-packaging (24.0-1) ...
842s Setting up python3-brotli (1.1.0-2build2) ...
843s Setting up python3-cycler (0.12.1-1) ...
843s Setting up libimagequant0:arm64 (2.18.0-1build1) ...
843s Setting up python3-kiwisolver (1.4.5-1) ...
843s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ...
843s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ...
843s Setting up python3-pluggy (1.5.0-1) ...
843s Setting up libxslt1.1:arm64 (1.1.39-0exp1build1) ...
843s Setting up libopenjp2-7:arm64 (2.5.0-2build3) ...
843s Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ...
843s Setting up python3-dateutil (2.9.0-2) ...
843s Setting up sgml-base (1.31) ...
843s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
843s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
843s Setting up python3-mpmath (1.3.0-1) ...
844s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ...
844s Setting up libwebpmux3:arm64 (1.4.0-0.1) ...
844s Setting up python3-appdirs (1.4.4-4) ...
844s Setting up python3-sympy (1.12-8) ...
851s Setting up liblapack3:arm64 (3.12.0-3build1) ...
851s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
851s Setting up libxft2:arm64 (2.3.6-1build1) ...
851s Setting up python3-pytest (8.2.2-1ubuntu1) ...
851s Setting up libtk8.6:arm64 (8.6.14-1build1) ...
851s Setting up python3-fs (2.4.16-4) ...
851s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
851s Setting up libraqm0:arm64 (0.10.1-1build1) ...
851s Setting up python3-numpy (1:1.26.4+ds-10) ...
853s Setting up python3-lxml:arm64 (5.2.1-1) ...
854s Setting up xml-core (0.19) ...
854s Setting up python3-contourpy (1.0.7-3) ...
854s Setting up python3-periodictable (1.7.0-1) ...
854s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
854s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
854s Setting up python3-scipy (1.11.4-10) ...
858s Setting up blt (2.5.3+dfsg-7build1) ...
858s Setting up python3-tk:arm64 (3.12.3-0ubuntu1) ...
858s Setting up python3-pil:arm64 (10.3.0-2) ...
858s Setting up python3-pil.imagetk:arm64 (10.3.0-2) ...
858s Setting up python3-fonttools (4.46.0-1build2) ...
859s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
859s Setting up python3-matplotlib (3.6.3-2ubuntu1) ...
861s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
861s Processing triggers for man-db (2.12.1-1) ...
862s Processing triggers for sgml-base (1.31) ...
862s Setting up docutils-common (0.20.1+dfsg-3) ...
863s Processing triggers for sgml-base (1.31) ...
863s Setting up python3-docutils (0.20.1+dfsg-3) ...
863s Setting up autopkgtest-satdep (0) ...
869s (Reading database ... 85323 files and directories currently installed.)
869s Removing autopkgtest-satdep (0) ...
870s autopkgtest [13:23:16]: test python3-periodictable: [-----------------------
872s ============================= test session starts ==============================
872s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0
872s rootdir: /tmp/autopkgtest.0LFluH/autopkgtest_tmp
872s configfile: pytest.ini
872s collected 23 items
872s 
872s test/test_activation.py .                                                [  4%]
872s test/test_core.py .                                                      [  8%]
872s test/test_covalent_radius.py .                                           [ 13%]
872s test/test_crystal_structure.py .                                         [ 17%]
872s test/test_density.py .                                                   [ 21%]
873s test/test_formulas.py .                                                  [ 26%]
873s test/test_magnetic_ff.py .                                               [ 30%]
873s test/test_mass.py .                                                      [ 34%]
873s test/test_nsf.py .......                                                 [ 65%]
873s test/test_nsfd2o.py .                                                    [ 69%]
873s test/test_private.py .                                                   [ 73%]
873s test/test_xsf.py ..                                                      [ 82%]
873s doc/sphinx/guide/customizing.rst .                                       [ 86%]
873s doc/sphinx/guide/extending.rst .                                         [ 91%]
873s doc/sphinx/guide/formula_grammar.rst .                                   [ 95%]
873s doc/sphinx/guide/using.rst .                                             [100%]
873s 
873s =============================== warnings summary ===============================
873s test/test_xsf.py::test_xsf
873s   /usr/lib/python3/dist-packages/periodictable/cromermann.py:62: ResourceWarning: unclosed file <_io.TextIOWrapper name='/usr/lib/python3/dist-packages/periodictable/xsf/f0_WaasKirf.dat' mode='r' encoding='UTF-8'>
873s     _update_cmformulas()
873s   Enable tracemalloc to get traceback where the object was allocated.
873s   See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info.
873s 
873s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
873s ======================== 23 passed, 1 warning in 2.24s =========================
873s autopkgtest [13:23:19]: test python3-periodictable: -----------------------]
874s autopkgtest [13:23:20]: test python3-periodictable:  - - - - - - - - - - results - - - - - - - - - -
874s python3-periodictable PASS
874s autopkgtest [13:23:20]: @@@@@@@@@@@@@@@@@@@@ summary
874s python3-periodictable PASS
964s nova [W] Skipping flock in bos03-arm64
964s Creating nova instance adt-oracular-arm64-python-periodictable-20240608-130845-juju-7f2275-prod-proposed-migration-environment-3-754fc0e6-bb39-4123-b679-95f488e8dc8c from image adt/ubuntu-oracular-arm64-server-20240608.img (UUID 22fa5d69-8269-442f-bb5d-fd1454f7b08f)...