0s autopkgtest [03:41:49]: starting date and time: 2024-07-24 03:41:49+0000 0s autopkgtest [03:41:49]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [03:41:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ny_hwp6r/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:boost1.83 --apt-upgrade prime-phylo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=boost1.83/1.83.0-3ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-37.secgroup --name adt-oracular-arm64-prime-phylo-20240724-034149-juju-7f2275-prod-proposed-migration-environment-2-ddcc6548-9de2-47aa-9f26-fea682bad731 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 356s autopkgtest [03:47:45]: testbed dpkg architecture: arm64 356s autopkgtest [03:47:45]: testbed apt version: 2.9.6 356s autopkgtest [03:47:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 356s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 357s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 357s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [65.9 kB] 357s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [415 kB] 357s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B] 357s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [135 kB] 357s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2116 B] 357s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 357s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 357s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [566 kB] 357s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8752 B] 357s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8740 B] 357s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B] 360s Fetched 1384 kB in 1s (1556 kB/s) 360s Reading package lists... 362s Reading package lists... 363s Building dependency tree... 363s Reading state information... 363s Calculating upgrade... 364s The following packages will be upgraded: 364s dmsetup gcc-14-base gdisk libdevmapper1.02.1 libgcc-s1 libstdc++6 logrotate 364s netcat-openbsd networkd-dispatcher systemd-hwe-hwdb 364s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 364s Need to get 1427 kB of archives. 364s After this operation, 1024 B of additional disk space will be used. 364s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-14-base arm64 14.1.0-5ubuntu1 [49.9 kB] 364s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++6 arm64 14.1.0-5ubuntu1 [749 kB] 364s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-s1 arm64 14.1.0-5ubuntu1 [61.8 kB] 364s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libdevmapper1.02.1 arm64 2:1.02.196-1ubuntu1 [128 kB] 364s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 dmsetup arm64 2:1.02.196-1ubuntu1 [74.8 kB] 364s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 logrotate arm64 3.22.0-1 [52.2 kB] 364s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 netcat-openbsd arm64 1.226-1.1 [43.3 kB] 364s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 networkd-dispatcher all 2.2.4-1.1 [15.6 kB] 364s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 systemd-hwe-hwdb all 256.2.1 [3210 B] 364s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 gdisk arm64 1.0.10-2 [249 kB] 365s Fetched 1427 kB in 1s (2202 kB/s) 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 365s Preparing to unpack .../gcc-14-base_14.1.0-5ubuntu1_arm64.deb ... 365s Unpacking gcc-14-base:arm64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 365s Setting up gcc-14-base:arm64 (14.1.0-5ubuntu1) ... 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 365s Preparing to unpack .../libstdc++6_14.1.0-5ubuntu1_arm64.deb ... 365s Unpacking libstdc++6:arm64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 366s Setting up libstdc++6:arm64 (14.1.0-5ubuntu1) ... 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 366s Preparing to unpack .../libgcc-s1_14.1.0-5ubuntu1_arm64.deb ... 366s Unpacking libgcc-s1:arm64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 366s Setting up libgcc-s1:arm64 (14.1.0-5ubuntu1) ... 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 366s Preparing to unpack .../0-libdevmapper1.02.1_2%3a1.02.196-1ubuntu1_arm64.deb ... 366s Unpacking libdevmapper1.02.1:arm64 (2:1.02.196-1ubuntu1) over (2:1.02.185-3ubuntu4) ... 366s Preparing to unpack .../1-dmsetup_2%3a1.02.196-1ubuntu1_arm64.deb ... 366s Unpacking dmsetup (2:1.02.196-1ubuntu1) over (2:1.02.185-3ubuntu4) ... 366s Preparing to unpack .../2-logrotate_3.22.0-1_arm64.deb ... 366s Unpacking logrotate (3.22.0-1) over (3.21.0-2build1) ... 367s Preparing to unpack .../3-netcat-openbsd_1.226-1.1_arm64.deb ... 367s Unpacking netcat-openbsd (1.226-1.1) over (1.226-1ubuntu2) ... 367s Preparing to unpack .../4-networkd-dispatcher_2.2.4-1.1_all.deb ... 367s Unpacking networkd-dispatcher (2.2.4-1.1) over (2.2.4-1) ... 367s Preparing to unpack .../5-systemd-hwe-hwdb_256.2.1_all.deb ... 367s Unpacking systemd-hwe-hwdb (256.2.1) over (255.1.3) ... 367s Preparing to unpack .../6-gdisk_1.0.10-2_arm64.deb ... 367s Unpacking gdisk (1.0.10-2) over (1.0.10-1build1) ... 367s Setting up logrotate (3.22.0-1) ... 368s logrotate.service is a disabled or a static unit not running, not starting it. 368s Setting up networkd-dispatcher (2.2.4-1.1) ... 368s Setting up netcat-openbsd (1.226-1.1) ... 368s Setting up gdisk (1.0.10-2) ... 368s Setting up systemd-hwe-hwdb (256.2.1) ... 368s Setting up libdevmapper1.02.1:arm64 (2:1.02.196-1ubuntu1) ... 368s Setting up dmsetup (2:1.02.196-1ubuntu1) ... 369s Processing triggers for libc-bin (2.39-0ubuntu9) ... 369s Processing triggers for man-db (2.12.1-2) ... 370s Processing triggers for udev (256-1ubuntu1) ... 370s Processing triggers for initramfs-tools (0.142ubuntu30) ... 370s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 371s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 514s System running in EFI mode, skipping. 516s Reading package lists... 516s Building dependency tree... 516s Reading state information... 517s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 519s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 519s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 519s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 520s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 525s Reading package lists... 526s Reading package lists... 526s Building dependency tree... 526s Reading state information... 527s Calculating upgrade... 527s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 528s Reading package lists... 528s Building dependency tree... 528s Reading state information... 528s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 530s autopkgtest [03:50:39]: rebooting testbed after setup commands that affected boot 536s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 569s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 602s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 621s autopkgtest [03:52:10]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 631s autopkgtest [03:52:20]: @@@@@@@@@@@@@@@@@@@@ apt-source prime-phylo 640s Get:1 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (dsc) [2175 B] 640s Get:2 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (tar) [751 kB] 640s Get:3 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (diff) [9072 B] 642s gpgv: Signature made Fri Apr 12 11:16:52 2024 UTC 642s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 642s gpgv: Can't check signature: No public key 642s dpkg-source: warning: cannot verify inline signature for ./prime-phylo_1.0.11-11.dsc: no acceptable signature found 648s autopkgtest [03:52:37]: testing package prime-phylo version 1.0.11-11 650s autopkgtest [03:52:39]: build not needed 652s autopkgtest [03:52:41]: test run-unit-test: preparing testbed 659s Reading package lists... 664s Building dependency tree... 664s Reading state information... 664s Starting pkgProblemResolver with broken count: 0 664s Starting 2 pkgProblemResolver with broken count: 0 664s Done 665s The following additional packages will be installed: 665s libatomic1 libblas3 libboost-mpi1.83.0 libboost-serialization1.83.0 665s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libhwloc-plugins 665s libhwloc15 liblapack3 libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64 665s librdmacm1t64 libucx0 libxnvctrl0 ocl-icd-libopencl1 prime-phylo 665s Suggested packages: 665s opencl-icd njplot treeviewx muscle probalign mafft python3-biopython mrbayes 665s phyml raxml 665s The following NEW packages will be installed: 665s autopkgtest-satdep libatomic1 libblas3 libboost-mpi1.83.0 665s libboost-serialization1.83.0 libevent-pthreads-2.1-7t64 libfabric1 665s libgfortran5 libhwloc-plugins libhwloc15 liblapack3 libmunge2 libopenmpi3t64 665s libpciaccess0 libpmix2t64 librdmacm1t64 libucx0 libxnvctrl0 665s ocl-icd-libopencl1 prime-phylo 665s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. 665s Need to get 9278 kB/9278 kB of archives. 665s After this operation, 40.5 MB of additional disk space will be used. 665s Get:1 /tmp/autopkgtest.AbeCj4/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 666s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14.1.0-5ubuntu1 [11.5 kB] 666s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 666s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 libboost-serialization1.83.0 arm64 1.83.0-3ubuntu2 [335 kB] 666s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 666s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 librdmacm1t64 arm64 52.0-2 [70.8 kB] 666s Get:7 http://ftpmaster.internal/ubuntu oracular/universe arm64 libfabric1 arm64 1.17.0-3build2 [541 kB] 666s Get:8 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhwloc15 arm64 2.10.0-1build1 [159 kB] 666s Get:9 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB] 666s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 666s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 666s Get:12 http://ftpmaster.internal/ubuntu oracular/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 666s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhwloc-plugins arm64 2.10.0-1build1 [15.7 kB] 666s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 libpmix2t64 arm64 5.0.1-4.1build1 [655 kB] 666s Get:15 http://ftpmaster.internal/ubuntu oracular/universe arm64 libucx0 arm64 1.16.0+ds-5ubuntu1 [1074 kB] 666s Get:16 http://ftpmaster.internal/ubuntu oracular/universe arm64 libopenmpi3t64 arm64 4.1.6-7ubuntu2 [2463 kB] 666s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 libboost-mpi1.83.0 arm64 1.83.0-3ubuntu2 [269 kB] 666s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-5ubuntu1 [438 kB] 666s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 666s Get:20 http://ftpmaster.internal/ubuntu oracular/universe arm64 prime-phylo arm64 1.0.11-11 [769 kB] 671s Fetched 9278 kB in 1s (8371 kB/s) 672s Selecting previously unselected package libatomic1:arm64. 672s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 672s Preparing to unpack .../00-libatomic1_14.1.0-5ubuntu1_arm64.deb ... 672s Unpacking libatomic1:arm64 (14.1.0-5ubuntu1) ... 673s Selecting previously unselected package libblas3:arm64. 675s Preparing to unpack .../01-libblas3_3.12.0-3build1_arm64.deb ... 675s Unpacking libblas3:arm64 (3.12.0-3build1) ... 676s Selecting previously unselected package libboost-serialization1.83.0:arm64. 679s Preparing to unpack .../02-libboost-serialization1.83.0_1.83.0-3ubuntu2_arm64.deb ... 679s Unpacking libboost-serialization1.83.0:arm64 (1.83.0-3ubuntu2) ... 680s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 683s Preparing to unpack .../03-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 683s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 683s Selecting previously unselected package librdmacm1t64:arm64. 686s Preparing to unpack .../04-librdmacm1t64_52.0-2_arm64.deb ... 687s Unpacking librdmacm1t64:arm64 (52.0-2) ... 687s Selecting previously unselected package libfabric1:arm64. 689s Preparing to unpack .../05-libfabric1_1.17.0-3build2_arm64.deb ... 689s Unpacking libfabric1:arm64 (1.17.0-3build2) ... 690s Selecting previously unselected package libhwloc15:arm64. 693s Preparing to unpack .../06-libhwloc15_2.10.0-1build1_arm64.deb ... 693s Unpacking libhwloc15:arm64 (2.10.0-1build1) ... 693s Selecting previously unselected package libmunge2:arm64. 699s Preparing to unpack .../07-libmunge2_0.5.15-4build1_arm64.deb ... 699s Unpacking libmunge2:arm64 (0.5.15-4build1) ... 700s Selecting previously unselected package libpciaccess0:arm64. 703s Preparing to unpack .../08-libpciaccess0_0.17-3build1_arm64.deb ... 703s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 704s Selecting previously unselected package libxnvctrl0:arm64. 709s Preparing to unpack .../09-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 709s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 710s Selecting previously unselected package ocl-icd-libopencl1:arm64. 712s Preparing to unpack .../10-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 712s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 713s Selecting previously unselected package libhwloc-plugins:arm64. 717s Preparing to unpack .../11-libhwloc-plugins_2.10.0-1build1_arm64.deb ... 718s Unpacking libhwloc-plugins:arm64 (2.10.0-1build1) ... 719s Selecting previously unselected package libpmix2t64:arm64. 723s Preparing to unpack .../12-libpmix2t64_5.0.1-4.1build1_arm64.deb ... 723s Unpacking libpmix2t64:arm64 (5.0.1-4.1build1) ... 725s Selecting previously unselected package libucx0:arm64. 735s Preparing to unpack .../13-libucx0_1.16.0+ds-5ubuntu1_arm64.deb ... 735s Unpacking libucx0:arm64 (1.16.0+ds-5ubuntu1) ... 736s Selecting previously unselected package libopenmpi3t64:arm64. 742s Preparing to unpack .../14-libopenmpi3t64_4.1.6-7ubuntu2_arm64.deb ... 742s Unpacking libopenmpi3t64:arm64 (4.1.6-7ubuntu2) ... 744s Selecting previously unselected package libboost-mpi1.83.0. 748s Preparing to unpack .../15-libboost-mpi1.83.0_1.83.0-3ubuntu2_arm64.deb ... 749s Unpacking libboost-mpi1.83.0 (1.83.0-3ubuntu2) ... 749s Selecting previously unselected package libgfortran5:arm64. 755s Preparing to unpack .../16-libgfortran5_14.1.0-5ubuntu1_arm64.deb ... 755s Unpacking libgfortran5:arm64 (14.1.0-5ubuntu1) ... 756s Selecting previously unselected package liblapack3:arm64. 759s Preparing to unpack .../17-liblapack3_3.12.0-3build1_arm64.deb ... 759s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 759s Selecting previously unselected package prime-phylo. 761s Preparing to unpack .../18-prime-phylo_1.0.11-11_arm64.deb ... 761s Unpacking prime-phylo (1.0.11-11) ... 762s Selecting previously unselected package autopkgtest-satdep. 766s Preparing to unpack .../19-1-autopkgtest-satdep.deb ... 766s Unpacking autopkgtest-satdep (0) ... 769s Setting up libpciaccess0:arm64 (0.17-3build1) ... 769s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 769s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 769s Setting up libboost-serialization1.83.0:arm64 (1.83.0-3ubuntu2) ... 769s Setting up libblas3:arm64 (3.12.0-3build1) ... 770s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 770s Setting up libmunge2:arm64 (0.5.15-4build1) ... 770s Setting up libhwloc15:arm64 (2.10.0-1build1) ... 770s Setting up libatomic1:arm64 (14.1.0-5ubuntu1) ... 770s Setting up libgfortran5:arm64 (14.1.0-5ubuntu1) ... 770s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 770s Setting up librdmacm1t64:arm64 (52.0-2) ... 770s Setting up libfabric1:arm64 (1.17.0-3build2) ... 770s Setting up libucx0:arm64 (1.16.0+ds-5ubuntu1) ... 770s Setting up liblapack3:arm64 (3.12.0-3build1) ... 770s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 770s Setting up libhwloc-plugins:arm64 (2.10.0-1build1) ... 770s Setting up libpmix2t64:arm64 (5.0.1-4.1build1) ... 770s Setting up libopenmpi3t64:arm64 (4.1.6-7ubuntu2) ... 770s Setting up libboost-mpi1.83.0 (1.83.0-3ubuntu2) ... 770s Setting up prime-phylo (1.0.11-11) ... 770s Setting up autopkgtest-satdep (0) ... 770s Processing triggers for man-db (2.12.1-2) ... 771s Processing triggers for libc-bin (2.39-0ubuntu9) ... 789s (Reading database ... 78761 files and directories currently installed.) 789s Removing autopkgtest-satdep (0) ... 805s autopkgtest [03:55:14]: test run-unit-test: [----------------------- 816s PASS Test 1 1083s L N alpha time 1122s -3785.26 0 1 1122s 1125s PASS Test 2 1131s autopkgtest [04:00:40]: test run-unit-test: -----------------------] 1135s run-unit-test PASS 1135s autopkgtest [04:00:44]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1138s autopkgtest [04:00:47]: @@@@@@@@@@@@@@@@@@@@ summary 1138s run-unit-test PASS 2357s nova [W] Skipping flock in bos03-arm64 2357s Creating nova instance adt-oracular-arm64-prime-phylo-20240724-034149-juju-7f2275-prod-proposed-migration-environment-2-ddcc6548-9de2-47aa-9f26-fea682bad731 from image adt/ubuntu-oracular-arm64-server-20240721.img (UUID 82bde252-f2f6-4a5f-8912-308e3b0a85c9)... 2357s nova [E] Timed out waiting for 417f50ec-c63e-4fcf-97a8-8713245c8d41 to get deleted. 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