0s autopkgtest [03:51:34]: starting date and time: 2024-07-13 03:51:34+0000
  0s autopkgtest [03:51:34]: git checkout: fd3bed09 nova: allow more retries for quota issues
  0s autopkgtest [03:51:34]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.veo6upd7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade phyx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-4.secgroup --name adt-oracular-arm64-phyx-20240713-035134-juju-7f2275-prod-proposed-migration-environment-2-8ae514c6-b8ef-4c8e-bca3-cb901583d9fd --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
462s autopkgtest [03:59:16]: testbed dpkg architecture: arm64
466s autopkgtest [03:59:20]: testbed apt version: 2.9.6
466s autopkgtest [03:59:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup
470s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
476s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [364 kB]
476s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
476s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [48.2 kB]
476s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3860 B]
476s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [109 kB]
476s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2116 B]
476s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB]
477s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B]
477s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [419 kB]
477s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8752 B]
477s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8216 B]
477s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B]
481s Fetched 1144 kB in 9s (134 kB/s)
482s Reading package lists...
486s Reading package lists...
487s Building dependency tree...
487s Reading state information...
487s Calculating upgrade...
488s The following packages will be upgraded:
488s   inetutils-telnet libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales
488s   openssh-client openssh-server openssh-sftp-server telnet
488s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
488s Need to get 10.7 MB of archives.
488s After this operation, 28.7 kB disk space will be freed.
488s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-devtools arm64 2.39-3.1ubuntu3 [27.7 kB]
488s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6-dev arm64 2.39-3.1ubuntu3 [1591 kB]
489s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-dev-bin arm64 2.39-3.1ubuntu3 [19.7 kB]
489s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6 arm64 2.39-3.1ubuntu3 [2770 kB]
489s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-bin arm64 2.39-3.1ubuntu3 [579 kB]
489s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-sftp-server arm64 1:9.6p1-3ubuntu17 [36.7 kB]
489s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-server arm64 1:9.6p1-3ubuntu17 [502 kB]
489s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-client arm64 1:9.6p1-3ubuntu17 [888 kB]
489s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 locales all 2.39-3.1ubuntu3 [4220 kB]
489s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 inetutils-telnet arm64 2:2.5-5ubuntu1 [103 kB]
489s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 telnet all 0.17+2.5-5ubuntu1 [3688 B]
490s Preconfiguring packages ...
491s Fetched 10.7 MB in 1s (10.7 MB/s)
493s (Reading database ... 
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(Reading database ... 78392 files and directories currently installed.)
493s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_arm64.deb ...
493s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
495s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_arm64.deb ...
495s Unpacking libc6-dev:arm64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
498s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_arm64.deb ...
498s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
499s Preparing to unpack .../libc6_2.39-3.1ubuntu3_arm64.deb ...
500s Unpacking libc6:arm64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
500s Setting up libc6:arm64 (2.39-3.1ubuntu3) ...
500s Error: Could not restart systemd, systemd binary not working
501s (Reading database ... 
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(Reading database ... 78392 files and directories currently installed.)
501s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_arm64.deb ...
501s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
501s Setting up libc-bin (2.39-3.1ubuntu3) ...
501s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78392 files and directories currently installed.)
501s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_arm64.deb ...
501s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ...
501s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_arm64.deb ...
501s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ...
502s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_arm64.deb ...
502s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ...
502s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ...
502s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
502s Preparing to unpack .../4-inetutils-telnet_2%3a2.5-5ubuntu1_arm64.deb ...
502s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ...
502s Preparing to unpack .../5-telnet_0.17+2.5-5ubuntu1_all.deb ...
502s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ...
502s Setting up openssh-client (1:9.6p1-3ubuntu17) ...
502s Setting up inetutils-telnet (2:2.5-5ubuntu1) ...
502s Setting up locales (2.39-3.1ubuntu3) ...
507s Generating locales (this might take a while)...
524s   en_US.UTF-8... done
524s Generation complete.
527s Setting up libc-dev-bin (2.39-3.1ubuntu3) ...
527s Setting up libc-devtools (2.39-3.1ubuntu3) ...
527s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ...
527s Setting up telnet (0.17+2.5-5ubuntu1) ...
527s Setting up openssh-server (1:9.6p1-3ubuntu17) ...
527s Installing new version of config file /etc/pam.d/sshd ...
533s Setting up libc6-dev:arm64 (2.39-3.1ubuntu3) ...
533s Processing triggers for systemd (256-1ubuntu1) ...
536s Processing triggers for man-db (2.12.1-2) ...
536s Processing triggers for ufw (0.36.2-6) ...
536s Reading package lists...
537s Building dependency tree...
537s Reading state information...
537s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
538s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease
538s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease
538s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease
538s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
542s Reading package lists...
542s Reading package lists...
542s Building dependency tree...
542s Reading state information...
543s Calculating upgrade...
543s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
544s Reading package lists...
544s Building dependency tree...
544s Reading state information...
545s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
547s autopkgtest [04:00:41]: rebooting testbed after setup commands that affected boot
554s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
587s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
620s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
646s autopkgtest [04:02:20]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024
649s autopkgtest [04:02:23]: @@@@@@@@@@@@@@@@@@@@ apt-source phyx
653s Get:1 http://ftpmaster.internal/ubuntu oracular/universe phyx 1.3.1+ds-2build1 (dsc) [2055 B]
653s Get:2 http://ftpmaster.internal/ubuntu oracular/universe phyx 1.3.1+ds-2build1 (tar) [1191 kB]
653s Get:3 http://ftpmaster.internal/ubuntu oracular/universe phyx 1.3.1+ds-2build1 (diff) [10.7 kB]
654s gpgv: Signature made Fri Oct 27 16:50:07 2023 UTC
654s gpgv:                using RSA key 4D0BE12F0E4776D8AACE9696E66C775AEBFE6C7D
654s gpgv: Can't check signature: No public key
654s dpkg-source: warning: cannot verify inline signature for ./phyx_1.3.1+ds-2build1.dsc: no acceptable signature found
656s autopkgtest [04:02:30]: testing package phyx version 1.3.1+ds-2build1
656s autopkgtest [04:02:30]: build not needed
657s autopkgtest [04:02:31]: test run-unit-test: preparing testbed
659s Reading package lists...
660s Building dependency tree...
660s Reading state information...
660s Starting pkgProblemResolver with broken count: 0
660s Starting 2 pkgProblemResolver with broken count: 0
660s Done
661s The following additional packages will be installed:
661s   libarmadillo12 libarpack2t64 libblas3 libgfortran5 libgomp1 liblapack3
661s   libnlopt0 libsuperlu6 phyx
661s The following NEW packages will be installed:
661s   autopkgtest-satdep libarmadillo12 libarpack2t64 libblas3 libgfortran5
661s   libgomp1 liblapack3 libnlopt0 libsuperlu6 phyx
661s 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
661s Need to get 4987 kB/4987 kB of archives.
661s After this operation, 18.4 MB of additional disk space will be used.
661s Get:1 /tmp/autopkgtest.RY88z2/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B]
661s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB]
662s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB]
662s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB]
662s Get:5 http://ftpmaster.internal/ubuntu oracular/universe arm64 libarpack2t64 arm64 3.9.1-1.1build2 [90.6 kB]
662s Get:6 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1build1 [166 kB]
662s Get:7 http://ftpmaster.internal/ubuntu oracular/universe arm64 libarmadillo12 arm64 1:12.8.2+dfsg-1 [105 kB]
662s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB]
662s Get:9 http://ftpmaster.internal/ubuntu oracular/universe arm64 libnlopt0 arm64 2.7.1-5ubuntu1 [175 kB]
662s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 phyx arm64 1.3.1+ds-2build1 [1479 kB]
663s Fetched 4987 kB in 1s (6408 kB/s)
663s Selecting previously unselected package libblas3:arm64.
663s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78392 files and directories currently installed.)
663s Preparing to unpack .../0-libblas3_3.12.0-3build1_arm64.deb ...
663s Unpacking libblas3:arm64 (3.12.0-3build1) ...
663s Selecting previously unselected package libgfortran5:arm64.
663s Preparing to unpack .../1-libgfortran5_14.1.0-1ubuntu1_arm64.deb ...
663s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ...
663s Selecting previously unselected package liblapack3:arm64.
663s Preparing to unpack .../2-liblapack3_3.12.0-3build1_arm64.deb ...
663s Unpacking liblapack3:arm64 (3.12.0-3build1) ...
663s Selecting previously unselected package libarpack2t64:arm64.
663s Preparing to unpack .../3-libarpack2t64_3.9.1-1.1build2_arm64.deb ...
663s Unpacking libarpack2t64:arm64 (3.9.1-1.1build2) ...
663s Selecting previously unselected package libsuperlu6:arm64.
663s Preparing to unpack .../4-libsuperlu6_6.0.1+dfsg1-1build1_arm64.deb ...
663s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1build1) ...
663s Selecting previously unselected package libarmadillo12.
663s Preparing to unpack .../5-libarmadillo12_1%3a12.8.2+dfsg-1_arm64.deb ...
663s Unpacking libarmadillo12 (1:12.8.2+dfsg-1) ...
664s Selecting previously unselected package libgomp1:arm64.
664s Preparing to unpack .../6-libgomp1_14.1.0-1ubuntu1_arm64.deb ...
664s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ...
664s Selecting previously unselected package libnlopt0:arm64.
664s Preparing to unpack .../7-libnlopt0_2.7.1-5ubuntu1_arm64.deb ...
664s Unpacking libnlopt0:arm64 (2.7.1-5ubuntu1) ...
664s Selecting previously unselected package phyx.
664s Preparing to unpack .../8-phyx_1.3.1+ds-2build1_arm64.deb ...
664s Unpacking phyx (1.3.1+ds-2build1) ...
664s Selecting previously unselected package autopkgtest-satdep.
665s Preparing to unpack .../9-1-autopkgtest-satdep.deb ...
665s Unpacking autopkgtest-satdep (0) ...
666s Setting up libnlopt0:arm64 (2.7.1-5ubuntu1) ...
666s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ...
666s Setting up libblas3:arm64 (3.12.0-3build1) ...
666s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
666s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ...
666s Setting up liblapack3:arm64 (3.12.0-3build1) ...
666s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
666s Setting up libarpack2t64:arm64 (3.9.1-1.1build2) ...
666s Setting up libsuperlu6:arm64 (6.0.1+dfsg1-1build1) ...
666s Setting up libarmadillo12 (1:12.8.2+dfsg-1) ...
666s Setting up phyx (1.3.1+ds-2build1) ...
666s Setting up autopkgtest-satdep (0) ...
666s Processing triggers for man-db (2.12.1-2) ...
667s Processing triggers for libc-bin (2.39-3.1ubuntu3) ...
682s (Reading database ... 78659 files and directories currently installed.)
682s Removing autopkgtest-satdep (0) ...
688s autopkgtest [04:03:02]: test run-unit-test: [-----------------------
694s pxaa2cdn
695s pxbdfit
695s pxboot
695s pxboot
695s pxbp
695s pxcat
695s pxclsq
696s pxconsq
696s pxcontrates
697s pxfqfilt
697s pxlog
697s pxlog
697s pxlssq
698s pxlstr
698s pxmrca
698s pxmrcacut
698s pxmrcaname
698s pxnj
698s pxnw
725s pxrecode
725s pxrevcomp
725s pxrls
726s pxrlt
726s pxrms
727s pxrmt
727s pxrr
727s pxs2fa
728s pxs2phy
728s pxs2nex
728s pxseqgen
731s pxseqgen
731s pxsstat
731s pxstrec
732s pxsw
758s pxt2new
758s pxtlate
758s pxtscale
758s pxupgma
759s pxvcf2fa
762s autopkgtest [04:04:16]: test run-unit-test: -----------------------]
764s autopkgtest [04:04:18]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
764s run-unit-test        PASS
765s autopkgtest [04:04:19]: @@@@@@@@@@@@@@@@@@@@ summary
765s run-unit-test        PASS
814s nova [W] Skipping flock in bos03-arm64
814s Creating nova instance adt-oracular-arm64-phyx-20240713-035134-juju-7f2275-prod-proposed-migration-environment-2-8ae514c6-b8ef-4c8e-bca3-cb901583d9fd from image adt/ubuntu-oracular-arm64-server-20240712.img (UUID a9c53646-2a41-49d7-a14b-d40262a2cb6c)...