0s autopkgtest [02:47:17]: starting date and time: 2024-07-13 02:47:17+0000 0s autopkgtest [02:47:17]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [02:47:17]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.n39ybve1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade paml --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-30.secgroup --name adt-oracular-arm64-paml-20240713-024717-juju-7f2275-prod-proposed-migration-environment-2-102270f8-e991-4e8e-859e-2953e44d585b --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 95s autopkgtest [02:48:52]: testbed dpkg architecture: arm64 96s autopkgtest [02:48:53]: testbed apt version: 2.9.6 96s autopkgtest [02:48:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 97s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 98s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [364 kB] 98s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 98s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3860 B] 98s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [48.2 kB] 98s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [108 kB] 98s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2116 B] 98s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 98s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 98s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [418 kB] 98s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8752 B] 98s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8216 B] 98s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B] 100s Fetched 1141 kB in 1s (968 kB/s) 101s Reading package lists... 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Calculating upgrade... 105s The following packages will be upgraded: 105s inetutils-telnet libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 105s openssh-client openssh-server openssh-sftp-server telnet 105s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Need to get 10.7 MB of archives. 105s After this operation, 28.7 kB disk space will be freed. 105s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-devtools arm64 2.39-3.1ubuntu3 [27.7 kB] 105s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6-dev arm64 2.39-3.1ubuntu3 [1591 kB] 105s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-dev-bin arm64 2.39-3.1ubuntu3 [19.7 kB] 105s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6 arm64 2.39-3.1ubuntu3 [2770 kB] 105s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-bin arm64 2.39-3.1ubuntu3 [579 kB] 105s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-sftp-server arm64 1:9.6p1-3ubuntu17 [36.7 kB] 105s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-server arm64 1:9.6p1-3ubuntu17 [502 kB] 105s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-client arm64 1:9.6p1-3ubuntu17 [888 kB] 106s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 locales all 2.39-3.1ubuntu3 [4220 kB] 106s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 inetutils-telnet arm64 2:2.5-5ubuntu1 [103 kB] 106s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 telnet all 0.17+2.5-5ubuntu1 [3688 B] 107s Preconfiguring packages ... 107s Fetched 10.7 MB in 1s (10.4 MB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78392 files and directories currently installed.) 107s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_arm64.deb ... 107s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 108s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_arm64.deb ... 108s Unpacking libc6-dev:arm64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 108s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_arm64.deb ... 108s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 108s Preparing to unpack .../libc6_2.39-3.1ubuntu3_arm64.deb ... 108s Unpacking libc6:arm64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 109s Setting up libc6:arm64 (2.39-3.1ubuntu3) ... 109s Error: Could not restart systemd, systemd binary not working 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78392 files and directories currently installed.) 109s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_arm64.deb ... 109s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 109s Setting up libc-bin (2.39-3.1ubuntu3) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78392 files and directories currently installed.) 109s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_arm64.deb ... 109s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 110s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_arm64.deb ... 110s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 110s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_arm64.deb ... 110s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 110s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ... 110s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 110s Preparing to unpack .../4-inetutils-telnet_2%3a2.5-5ubuntu1_arm64.deb ... 110s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 110s Preparing to unpack .../5-telnet_0.17+2.5-5ubuntu1_all.deb ... 110s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 110s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 111s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 111s Setting up locales (2.39-3.1ubuntu3) ... 112s Generating locales (this might take a while)... 114s en_US.UTF-8... done 114s Generation complete. 114s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 114s Setting up libc-devtools (2.39-3.1ubuntu3) ... 114s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 114s Setting up telnet (0.17+2.5-5ubuntu1) ... 114s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 114s Installing new version of config file /etc/pam.d/sshd ... 116s Setting up libc6-dev:arm64 (2.39-3.1ubuntu3) ... 116s Processing triggers for systemd (256-1ubuntu1) ... 119s Processing triggers for man-db (2.12.1-2) ... 120s Processing triggers for ufw (0.36.2-6) ... 120s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 123s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 123s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 123s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 127s Reading package lists... 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 128s Calculating upgrade... 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s autopkgtest [02:49:27]: rebooting testbed after setup commands that affected boot 135s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 168s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 201s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 210s autopkgtest [02:50:47]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 216s autopkgtest [02:50:53]: @@@@@@@@@@@@@@@@@@@@ apt-source paml 220s Get:1 http://ftpmaster.internal/ubuntu oracular/universe paml 4.9j+dfsg-4 (dsc) [2204 B] 220s Get:2 http://ftpmaster.internal/ubuntu oracular/universe paml 4.9j+dfsg-4 (tar) [1375 kB] 220s Get:3 http://ftpmaster.internal/ubuntu oracular/universe paml 4.9j+dfsg-4 (diff) [7128 B] 221s gpgv: Signature made Sat Dec 24 15:02:32 2022 UTC 221s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 221s gpgv: issuer "emollier@debian.org" 221s gpgv: Can't check signature: No public key 221s dpkg-source: warning: cannot verify inline signature for ./paml_4.9j+dfsg-4.dsc: no acceptable signature found 222s autopkgtest [02:50:59]: testing package paml version 4.9j+dfsg-4 222s autopkgtest [02:50:59]: build not needed 223s autopkgtest [02:51:00]: test run-unit-test: preparing testbed 225s Reading package lists... 226s Building dependency tree... 226s Reading state information... 227s Starting pkgProblemResolver with broken count: 0 227s Starting 2 pkgProblemResolver with broken count: 0 227s Done 227s The following additional packages will be installed: 227s paml paml-doc 228s The following NEW packages will be installed: 228s autopkgtest-satdep paml paml-doc 228s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 228s Need to get 1619 kB/1620 kB of archives. 228s After this operation, 8417 kB of additional disk space will be used. 228s Get:1 /tmp/autopkgtest.GwgcC7/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 228s Get:2 http://ftpmaster.internal/ubuntu oracular/universe arm64 paml arm64 4.9j+dfsg-4 [616 kB] 229s Get:3 http://ftpmaster.internal/ubuntu oracular/universe arm64 paml-doc all 4.9j+dfsg-4 [1003 kB] 233s Fetched 1619 kB in 1s (1731 kB/s) 233s Selecting previously unselected package paml. 233s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78392 files and directories currently installed.) 233s Preparing to unpack .../paml_4.9j+dfsg-4_arm64.deb ... 233s Unpacking paml (4.9j+dfsg-4) ... 234s Selecting previously unselected package paml-doc. 234s Preparing to unpack .../paml-doc_4.9j+dfsg-4_all.deb ... 234s Unpacking paml-doc (4.9j+dfsg-4) ... 234s Selecting previously unselected package autopkgtest-satdep. 235s Preparing to unpack .../1-autopkgtest-satdep.deb ... 235s Unpacking autopkgtest-satdep (0) ... 235s Setting up paml-doc (4.9j+dfsg-4) ... 235s Setting up paml (4.9j+dfsg-4) ... 235s Setting up autopkgtest-satdep (0) ... 240s (Reading database ... 78607 files and directories currently installed.) 240s Removing autopkgtest-satdep (0) ... 241s autopkgtest [02:51:18]: test run-unit-test: [----------------------- 242s Test 4 243s 243s CODONML in paml version 4.9j, October 2019 243s 243s ---------------------------------------------- 243s Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT 243s TTC | TCC | TAC | TGC 243s Leu L TTA | TCA | *** * TAA | *** * TGA 243s TTG | TCG | TAG | Trp W TGG 243s ---------------------------------------------- 243s Leu L CTT | Pro P CCT | His H CAT | Arg R CGT 243s CTC | CCC | CAC | CGC 243s CTA | CCA | Gln Q CAA | CGA 243s CTG | CCG | CAG | CGG 243s ---------------------------------------------- 243s Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT 243s ATC | ACC | AAC | AGC 243s ATA | ACA | Lys K AAA | Arg R AGA 243s Met M ATG | ACG | AAG | AGG 243s ---------------------------------------------- 243s Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT 243s GTC | GCC | GAC | GGC 243s GTA | GCA | Glu E GAA | GGA 243s GTG | GCG | GAG | GGG 243s ---------------------------------------------- 243s Nice code, uuh? 243s ns = 7 ls = 390 243s Reading sequences, sequential format.. 243s Reading seq # 1: Hsa_Human Reading seq # 2: Hla_gibbon Reading seq # 3: Cgu/Can_colobus Reading seq # 4: Pne_langur Reading seq # 5: Mmu_rhesus Reading seq # 6: Ssc_squirrelM Reading seq # 7: Cja_marmoset 243s Sequences read.. 243s Counting site patterns.. 0:00 243s Compressing, 81 patterns at 130 / 130 sites (100.0%), 0:00 243s Collecting fpatt[] & pose[], 81 patterns at 130 / 130 sites (100.0%), 0:00 243s Counting codons.. 243s 243s 168 bytes for distance 243s 79056 bytes for conP 243s 0 bytes for fhK 243s 5000000 bytes for space 243s 243s 2 branch types are in tree. Stop if wrong. 243s TREE # 1 243s ((1, 2), ((3, 4), 5), (6, 7)); MP score: 65 243s 197640 bytes for conP, adjusted 243s 243s 0.098051 0.106308 0.077520 0.052401 0.032666 0.055412 0.102868 0.107582 0.100563 0.029219 0.063183 0.881780 0.885085 1.149882 243s 243s ntime & nrate & np: 11 3 14 243s 243s Bounds (np=14): 243s 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000100 0.000100 243s 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 999.000000 999.000000 243s 243s np = 14 243s lnL0 = -945.911060 243s 243s Iterating by ming2 243s Initial: fx= 945.911060 243s x= 0.09805 0.10631 0.07752 0.05240 0.03267 0.05541 0.10287 0.10758 0.10056 0.02922 0.06318 0.88178 0.88509 1.14988 243s 243s 1 h-m-p 0.0000 0.0009 214.8786 +++CCCCC 929.374597 4 0.0007 30 | 0/14 243s 2 h-m-p 0.0001 0.0006 138.5833 YCYCCC 926.874814 5 0.0003 55 | 0/14 243s 3 h-m-p 0.0001 0.0006 72.1663 CYCCC 926.361657 4 0.0002 79 | 0/14 243s 4 h-m-p 0.0003 0.0032 50.5962 +YCCC 925.602101 3 0.0009 102 | 0/14 243s 5 h-m-p 0.0002 0.0020 184.8518 +YYCCC 923.631567 4 0.0007 126 | 0/14 243s 6 h-m-p 0.0002 0.0040 676.0887 +YCCC 912.760484 3 0.0014 149 | 0/14 243s 7 h-m-p 0.0003 0.0014 262.2473 CCCC 911.239578 3 0.0005 172 | 0/14 243s 8 h-m-p 0.0008 0.0041 97.8614 CYCCC 909.623836 4 0.0013 196 | 0/14 243s 9 h-m-p 0.0007 0.0037 67.5137 YCC 909.375327 2 0.0004 216 | 0/14 243s 10 h-m-p 0.0019 0.0099 13.1900 YCCC 909.316697 3 0.0009 238 | 0/14 243s 11 h-m-p 0.0010 0.1462 11.3529 +YCCC 909.101203 3 0.0061 261 | 0/14 243s 12 h-m-p 0.0009 0.0060 72.9574 CCCC 908.838652 3 0.0011 284 | 0/14 243s 13 h-m-p 0.0036 0.0178 4.5092 YC 908.833176 1 0.0007 302 | 0/14 243s 14 h-m-p 0.0056 2.8059 1.7148 ++++YYCCC 906.262895 4 1.1698 329 | 0/14 243s 15 h-m-p 1.6000 8.0000 0.9910 CCCC 904.926016 3 1.5951 352 | 0/14 243s 16 h-m-p 1.6000 8.0000 0.9481 CCCC 903.752446 3 2.4630 389 | 0/14 243s 17 h-m-p 1.6000 8.0000 0.6719 YYC 903.491004 2 1.3380 422 | 0/14 243s 18 h-m-p 1.6000 8.0000 0.3782 CCC 903.405487 2 2.2219 457 | 0/14 243s 19 h-m-p 1.6000 8.0000 0.2752 CCC 903.386835 2 1.3955 492 | 0/14 243s 20 h-m-p 1.6000 8.0000 0.1348 CC 903.382953 1 1.5085 525 | 0/14 247s 21 h-m-p 1.6000 8.0000 0.0874 ++ 903.370675 m 8.0000 556 | 0/14 247s 22 h-m-p 1.1398 8.0000 0.6135 ++ 903.291420 m 8.0000 587 | 0/14 247s 23 h-m-p 1.6000 8.0000 2.2780 CCC 903.220638 2 2.4882 622 | 0/14 247s 24 h-m-p 1.6000 8.0000 2.8293 YCC 903.179462 2 2.7335 642 | 0/14 247s 25 h-m-p 1.6000 8.0000 4.0504 YCCC 903.147652 3 3.2576 664 | 0/14 247s 26 h-m-p 1.6000 8.0000 6.1415 YCC 903.123381 2 3.0211 684 | 0/14 247s 27 h-m-p 1.6000 8.0000 8.8086 YCC 903.107694 2 3.3207 704 | 0/14 247s 28 h-m-p 1.6000 8.0000 13.2897 YCC 903.096632 2 3.1224 724 | 0/14 247s 29 h-m-p 1.6000 8.0000 19.4844 YC 903.089277 1 3.3303 742 | 0/14 247s 30 h-m-p 1.6000 8.0000 28.3452 YC 903.084372 1 3.0187 760 | 0/14 247s 31 h-m-p 1.6000 8.0000 41.6696 YC 903.080914 1 3.4465 778 | 0/14 247s 32 h-m-p 1.6000 8.0000 62.1368 YC 903.078656 1 2.9483 796 | 0/14 247s 33 h-m-p 0.8746 4.3732 89.4393 +C 903.077031 0 3.4985 814 | 0/14 247s 34 h-m-p 0.1116 0.5581 140.1710 ++ 903.076664 m 0.5581 831 | 1/14 247s 35 h-m-p 0.2706 8.0000 0.0008 +C 903.076551 0 0.9916 849 | 1/14 247s 36 h-m-p 1.6000 8.0000 0.0000 Y 903.076551 0 1.1717 879 | 1/14 247s 37 h-m-p 1.6000 8.0000 0.0000 C 903.076551 0 1.3256 909 | 1/14 247s 38 h-m-p 1.6000 8.0000 0.0000 C 903.076551 0 1.5523 939 247s Out.. 247s lnL = -903.076551 247s 940 lfun, 1880 eigenQcodon, 10340 P(t) 247s 247s 2 branch types are in tree. Stop if wrong. 247s TREE # 2 247s ((1, 2), ((3, 4), 5), (6, 7)); MP score: 65 247s 0.107370 0.026200 0.014605 0.093821 0.062483 0.091760 0.108936 0.034681 0.100942 0.053874 0.049754 1.052452 1.038949 1.138614 247s 247s ntime & nrate & np: 11 3 14 247s 247s Bounds (np=14): 247s 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000100 0.000100 247s 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 999.000000 999.000000 247s 247s np = 14 247s lnL0 = -934.263426 247s 247s Iterating by ming2 247s Initial: fx= 934.263426 247s x= 0.10737 0.02620 0.01461 0.09382 0.06248 0.09176 0.10894 0.03468 0.10094 0.05387 0.04975 1.05245 1.03895 1.13861 247s 247s 1 h-m-p 0.0000 0.0008 223.8821 ++YCCCC 927.982555 4 0.0004 28 | 0/14 247s 2 h-m-p 0.0002 0.0011 127.4451 CYCCCC 924.647906 5 0.0005 54 | 0/14 247s 3 h-m-p 0.0003 0.0015 82.0874 YCCC 924.243883 3 0.0002 76 | 0/14 247s 4 h-m-p 0.0004 0.0050 37.7890 YC 923.748550 1 0.0009 94 | 0/14 247s 5 h-m-p 0.0004 0.0040 90.0108 +CYCCC 921.604881 4 0.0018 119 | 0/14 247s 6 h-m-p 0.0003 0.0019 587.3873 YCCC 917.942665 3 0.0006 141 | 0/14 247s 7 h-m-p 0.0003 0.0013 686.1826 YCCC 914.205080 3 0.0005 163 | 0/14 247s 8 h-m-p 0.0004 0.0019 323.1946 YCCCC 910.894067 4 0.0009 187 | 0/14 247s 9 h-m-p 0.0003 0.0014 453.7970 CCCCC 908.716631 4 0.0004 212 | 0/14 247s 10 h-m-p 0.0005 0.0023 171.1262 CCCCC 907.650928 4 0.0006 237 | 0/14 247s 11 h-m-p 0.0023 0.0113 11.8773 CCC 907.623861 2 0.0005 258 | 0/14 247s 12 h-m-p 0.0011 0.0275 5.1891 CCC 907.608369 2 0.0013 279 | 0/14 247s 13 h-m-p 0.0009 0.2782 7.1742 ++CYCC 907.363111 3 0.0196 303 | 0/14 247s 14 h-m-p 0.0338 1.6977 4.1554 ++CYCCC 903.719887 4 0.6703 329 | 0/14 247s 15 h-m-p 1.2190 6.0948 0.5056 CCCCC 902.646773 4 1.5526 354 | 0/14 247s 16 h-m-p 1.6000 8.0000 0.4396 CYCC 902.147219 3 1.3904 390 | 0/14 247s 17 h-m-p 1.1715 8.0000 0.5218 YCC 901.747095 2 1.9993 424 | 0/14 247s 18 h-m-p 1.6000 8.0000 0.4132 CCC 901.646217 2 1.2594 459 | 0/14 247s 19 h-m-p 1.6000 8.0000 0.1579 CCC 901.634425 2 1.3021 494 | 0/14 247s 20 h-m-p 1.6000 8.0000 0.0591 YC 901.632945 1 1.0652 526 | 0/14 247s 21 h-m-p 1.6000 8.0000 0.0100 C 901.632754 0 1.7995 557 | 0/14 247s 22 h-m-p 1.5625 8.0000 0.0115 ++ 901.632301 m 8.0000 588 | 0/14 247s 23 h-m-p 1.6000 8.0000 0.0543 YC 901.631329 1 3.9748 620 | 0/14 247s 24 h-m-p 1.6000 8.0000 0.0984 C 901.630908 0 1.6000 651 | 0/14 247s 25 h-m-p 1.6000 8.0000 0.0162 Y 901.630891 0 1.1211 682 | 0/14 247s 26 h-m-p 1.6000 8.0000 0.0003 C 901.630891 0 1.2987 713 | 0/14 247s 27 h-m-p 1.6000 8.0000 0.0002 Y 901.630891 0 1.1464 744 | 0/14 247s 28 h-m-p 1.6000 8.0000 0.0000 Y 901.630891 0 0.9909 775 | 0/14 247s 29 h-m-p 1.4476 8.0000 0.0000 C 901.630891 0 1.3687 806 | 0/14 247s 30 h-m-p 1.6000 8.0000 0.0000 C 901.630891 0 2.4760 837 | 0/14 247s 31 h-m-p 1.6000 8.0000 0.0000 Y 901.630891 0 0.4000 868 | 0/14 247s 32 h-m-p 0.6888 8.0000 0.0000 -----Y 901.630891 0 0.0002 904 247s Out.. 247s lnL = -901.630891 247s 905 lfun, 1810 eigenQcodon, 9955 P(t) 247s 247s Tree comparisons (Kishino & Hasegawa 1989; Shimodaira & Hasegawa 1999) 247s Reading lnf for tree # 1 Reading lnf for tree # 2, done. 247s Calculating SEs by sitewise comparison, 0:05 247s RELL Bootstrapping.. replicate: 100 / 10000 0:05 RELL Bootstrapping.. replicate: 200 / 10000 0:05 RELL Bootstrapping.. replicate: 300 / 10000 0:05 RELL Bootstrapping.. replicate: 400 / 10000 0:05 RELL Bootstrapping.. replicate: 500 / 10000 0:05 RELL Bootstrapping.. replicate: 600 / 10000 0:05 RELL Bootstrapping.. replicate: 700 / 10000 0:05 RELL Bootstrapping.. replicate: 800 / 10000 0:05 RELL Bootstrapping.. replicate: 900 / 10000 0:05 RELL Bootstrapping.. replicate: 1000 / 10000 0:05 RELL Bootstrapping.. replicate: 1100 / 10000 0:05 RELL Bootstrapping.. replicate: 1200 / 10000 0:05 RELL Bootstrapping.. replicate: 1300 / 10000 0:05 RELL Bootstrapping.. replicate: 1400 / 10000 0:05 RELL Bootstrapping.. replicate: 1500 / 10000 0:05 RELL Bootstrapping.. replicate: 1600 / 10000 0:05 RELL Bootstrapping.. replicate: 1700 / 10000 0:05 RELL Bootstrapping.. replicate: 1800 / 10000 0:05 RELL Bootstrapping.. replicate: 1900 / 10000 0:05 RELL Bootstrapping.. replicate: 2000 / 10000 0:05 RELL Bootstrapping.. replicate: 2100 / 10000 0:05 RELL Bootstrapping.. replicate: 2200 / 10000 0:05 RELL Bootstrapping.. replicate: 2300 / 10000 0:05 RELL Bootstrapping.. replicate: 2400 / 10000 0:05 RELL Bootstrapping.. replicate: 2500 / 10000 0:05 RELL Bootstrapping.. replicate: 2600 / 10000 0:05 RELL Bootstrapping.. replicate: 2700 / 10000 0:05 RELL Bootstrapping.. replicate: 2800 / 10000 0:05 RELL Bootstrapping.. replicate: 2900 / 10000 0:05 RELL Bootstrapping.. replicate: 3000 / 10000 0:05 RELL Bootstrapping.. replicate: 3100 / 10000 0:05 RELL Bootstrapping.. replicate: 3200 / 10000 0:05 RELL Bootstrapping.. replicate: 3300 / 10000 0:05 RELL Bootstrapping.. replicate: 3400 / 10000 0:05 RELL Bootstrapping.. replicate: 3500 / 10000 0:05 RELL Bootstrapping.. replicate: 3600 / 10000 0:05 RELL Bootstrapping.. replicate: 3700 / 10000 0:05 RELL Bootstrapping.. replicate: 3800 / 10000 0:05 RELL Bootstrapping.. replicate: 3900 / 10000 0:05 RELL Bootstrapping.. replicate: 4000 / 10000 0:05 RELL Bootstrapping.. replicate: 4100 / 10000 0:05 RELL Bootstrapping.. replicate: 4200 / 10000 0:05 RELL Bootstrapping.. replicate: 4300 / 10000 0:05 RELL Bootstrapping.. replicate: 4400 / 10000 0:05 RELL Bootstrapping.. replicate: 4500 / 10000 0:05 RELL Bootstrapping.. replicate: 4600 / 10000 0:05 RELL Bootstrapping.. replicate: 4700 / 10000 0:05 RELL Bootstrapping.. replicate: 4800 / 10000 0:05 RELL Bootstrapping.. replicate: 4900 / 10000 0:05 RELL Bootstrapping.. replicate: 5000 / 10000 0:05 RELL Bootstrapping.. replicate: 5100 / 10000 0:05 RELL Bootstrapping.. replicate: 5200 / 10000 0:05 RELL Bootstrapping.. replicate: 5300 / 10000 0:05 RELL Bootstrapping.. replicate: 5400 / 10000 0:05 RELL Bootstrapping.. replicate: 5500 / 10000 0:05 RELL Bootstrapping.. replicate: 5600 / 10000 0:05 RELL Bootstrapping.. replicate: 5700 / 10000 0:05 RELL Bootstrapping.. replicate: 5800 / 10000 0:05 RELL Bootstrapping.. replicate: 5900 / 10000 0:05 RELL Bootstrapping.. replicate: 6000 / 10000 0:05 RELL Bootstrapping.. replicate: 6100 / 10000 0:05 RELL Bootstrapping.. replicate: 6200 / 10000 0:05 RELL Bootstrapping.. replicate: 6300 / 10000 0:05 RELL Bootstrapping.. replicate: 6400 / 10000 0:05 RELL Bootstrapping.. replicate: 6500 / 10000 0:05 RELL Bootstrapping.. replicate: 6600 / 10000 0:05 RELL Bootstrapping.. replicate: 6700 / 10000 0:05 RELL Bootstrapping.. replicate: 6800 / 10000 0:05 RELL Bootstrapping.. replicate: 6900 / 10000 0:05 RELL Bootstrapping.. replicate: 7000 / 10000 0:05 RELL Bootstrapping.. replicate: 7100 / 10000 0:05 RELL Bootstrapping.. replicate: 7200 / 10000 0:05 RELL Bootstrapping.. replicate: 7300 / 10000 0:05 RELL Bootstrapping.. replicate: 7400 / 10000 0:05 RELL Bootstrapping.. replicate: 7500 / 10000 0:05 RELL Bootstrapping.. replicate: 7600 / 10000 0:05 RELL Bootstrapping.. replicate: 7700 / 10000 0:05 RELL Bootstrapping.. replicate: 7800 / 10000 0:05 RELL Bootstrapping.. replicate: 7900 / 10000 0:05 RELL Bootstrapping.. replicate: 8000 / 10000 0:05 RELL Bootstrapping.. replicate: 8100 / 10000 0:05 RELL Bootstrapping.. replicate: 8200 / 10000 0:05 RELL Bootstrapping.. replicate: 8300 / 10000 0:05 RELL Bootstrapping.. replicate: 8400 / 10000 0:05 RELL Bootstrapping.. replicate: 8500 / 10000 0:05 RELL Bootstrapping.. replicate: 8600 / 10000 0:05 RELL Bootstrapping.. replicate: 8700 / 10000 0:05 RELL Bootstrapping.. replicate: 8800 / 10000 0:05 RELL Bootstrapping.. replicate: 8900 / 10000 0:05 RELL Bootstrapping.. replicate: 9000 / 10000 0:05 RELL Bootstrapping.. replicate: 9100 / 10000 0:05 RELL Bootstrapping.. replicate: 9200 / 10000 0:05 RELL Bootstrapping.. replicate: 9300 / 10000 0:05 RELL Bootstrapping.. replicate: 9400 / 10000 0:05 RELL Bootstrapping.. replicate: 9500 / 10000 0:05 RELL Bootstrapping.. replicate: 9600 / 10000 0:05 RELL Bootstrapping.. replicate: 9700 / 10000 0:05 RELL Bootstrapping.. replicate: 9800 / 10000 0:05 RELL Bootstrapping.. replicate: 9900 / 10000 0:05 RELL Bootstrapping.. replicate: 10000 / 10000 0:05 247s now doing S-H test 247s 247s Time used: 0:05 247s Passed 247s 248s autopkgtest [02:51:25]: test run-unit-test: -----------------------] 249s run-unit-test PASS 249s autopkgtest [02:51:26]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 250s autopkgtest [02:51:27]: @@@@@@@@@@@@@@@@@@@@ summary 250s run-unit-test PASS 290s nova [W] Skipping flock in bos03-arm64 290s Creating nova instance adt-oracular-arm64-paml-20240713-024717-juju-7f2275-prod-proposed-migration-environment-2-102270f8-e991-4e8e-859e-2953e44d585b from image adt/ubuntu-oracular-arm64-server-20240712.img (UUID a9c53646-2a41-49d7-a14b-d40262a2cb6c)...