0s autopkgtest [01:11:13]: starting date and time: 2024-07-13 01:11:13+0000
  0s autopkgtest [01:11:13]: git checkout: fd3bed09 nova: allow more retries for quota issues
  0s autopkgtest [01:11:13]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9juv7a2m/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade ncbi-tools6 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-55.secgroup --name adt-oracular-arm64-ncbi-tools6-20240713-011113-juju-7f2275-prod-proposed-migration-environment-2-4972cd3d-6b77-4925-8623-f50abd29bff8 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 71s autopkgtest [01:12:24]: testbed dpkg architecture: arm64
 71s autopkgtest [01:12:24]: testbed apt version: 2.9.6
 71s autopkgtest [01:12:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 71s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
 72s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
 72s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
 72s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [343 kB]
 72s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [47.1 kB]
 72s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [103 kB]
 72s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2116 B]
 72s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB]
 72s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B]
 72s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [406 kB]
 72s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8752 B]
 72s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [7596 B]
 72s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B]
 76s Fetched 1100 kB in 1s (878 kB/s)
 76s Reading package lists...
 81s Reading package lists...
 81s Building dependency tree...
 81s Reading state information...
 82s Calculating upgrade...
 82s The following packages will be upgraded:
 82s   inetutils-telnet libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales
 82s   openssh-client openssh-server openssh-sftp-server telnet
 83s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 83s Need to get 10.7 MB of archives.
 83s After this operation, 28.7 kB disk space will be freed.
 83s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-devtools arm64 2.39-3.1ubuntu3 [27.7 kB]
 83s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6-dev arm64 2.39-3.1ubuntu3 [1591 kB]
 83s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-dev-bin arm64 2.39-3.1ubuntu3 [19.7 kB]
 83s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6 arm64 2.39-3.1ubuntu3 [2770 kB]
 83s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-bin arm64 2.39-3.1ubuntu3 [579 kB]
 83s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-sftp-server arm64 1:9.6p1-3ubuntu17 [36.7 kB]
 83s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-server arm64 1:9.6p1-3ubuntu17 [502 kB]
 83s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-client arm64 1:9.6p1-3ubuntu17 [888 kB]
 83s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 locales all 2.39-3.1ubuntu3 [4220 kB]
 83s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 inetutils-telnet arm64 2:2.5-5ubuntu1 [103 kB]
 83s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 telnet all 0.17+2.5-5ubuntu1 [3688 B]
 84s Preconfiguring packages ...
 84s Fetched 10.7 MB in 1s (12.1 MB/s)
 85s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
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(Reading database ... 25%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78392 files and directories currently installed.)
 85s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_arm64.deb ...
 85s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
 85s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_arm64.deb ...
 85s Unpacking libc6-dev:arm64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
 86s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_arm64.deb ...
 86s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
 86s Preparing to unpack .../libc6_2.39-3.1ubuntu3_arm64.deb ...
 86s Unpacking libc6:arm64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
 87s Setting up libc6:arm64 (2.39-3.1ubuntu3) ...
 87s Error: Could not restart systemd, systemd binary not working
 87s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78392 files and directories currently installed.)
 87s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_arm64.deb ...
 87s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
 87s Setting up libc-bin (2.39-3.1ubuntu3) ...
 87s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78392 files and directories currently installed.)
 87s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_arm64.deb ...
 87s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ...
 88s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_arm64.deb ...
 88s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ...
 88s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_arm64.deb ...
 89s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ...
 89s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ...
 89s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
 89s Preparing to unpack .../4-inetutils-telnet_2%3a2.5-5ubuntu1_arm64.deb ...
 89s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ...
 90s Preparing to unpack .../5-telnet_0.17+2.5-5ubuntu1_all.deb ...
 90s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ...
 90s Setting up openssh-client (1:9.6p1-3ubuntu17) ...
 90s Setting up inetutils-telnet (2:2.5-5ubuntu1) ...
 90s Setting up locales (2.39-3.1ubuntu3) ...
 92s Generating locales (this might take a while)...
 95s   en_US.UTF-8... done
 95s Generation complete.
 95s Setting up libc-dev-bin (2.39-3.1ubuntu3) ...
 95s Setting up libc-devtools (2.39-3.1ubuntu3) ...
 95s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ...
 95s Setting up telnet (0.17+2.5-5ubuntu1) ...
 95s Setting up openssh-server (1:9.6p1-3ubuntu17) ...
 95s Installing new version of config file /etc/pam.d/sshd ...
 97s Setting up libc6-dev:arm64 (2.39-3.1ubuntu3) ...
 97s Processing triggers for systemd (256-1ubuntu1) ...
 98s Processing triggers for man-db (2.12.1-2) ...
100s Processing triggers for ufw (0.36.2-6) ...
100s Reading package lists...
101s Building dependency tree...
101s Reading state information...
101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
102s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease
102s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease
102s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease
102s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
103s Reading package lists...
104s Reading package lists...
104s Building dependency tree...
104s Reading state information...
104s Calculating upgrade...
105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
105s Reading package lists...
105s Building dependency tree...
105s Reading state information...
106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
106s autopkgtest [01:12:59]: rebooting testbed after setup commands that affected boot
111s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
136s autopkgtest [01:13:29]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024
139s autopkgtest [01:13:32]: @@@@@@@@@@@@@@@@@@@@ apt-source ncbi-tools6
151s Get:1 http://ftpmaster.internal/ubuntu oracular/universe ncbi-tools6 6.1.20170106+dfsg2-2 (dsc) [2919 B]
151s Get:2 http://ftpmaster.internal/ubuntu oracular/universe ncbi-tools6 6.1.20170106+dfsg2-2 (tar) [65.7 MB]
151s Get:3 http://ftpmaster.internal/ubuntu oracular/universe ncbi-tools6 6.1.20170106+dfsg2-2 (diff) [1514 kB]
151s gpgv: Signature made Wed Mar 20 03:27:56 2024 UTC
151s gpgv:                using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2
151s gpgv: Can't check signature: No public key
151s dpkg-source: warning: cannot verify inline signature for ./ncbi-tools6_6.1.20170106+dfsg2-2.dsc: no acceptable signature found
158s autopkgtest [01:13:51]: testing package ncbi-tools6 version 6.1.20170106+dfsg2-2
159s autopkgtest [01:13:52]: build not needed
176s autopkgtest [01:14:09]: test run-unit-test: preparing testbed
177s Reading package lists...
177s Building dependency tree...
177s Reading state information...
178s Starting pkgProblemResolver with broken count: 0
178s Starting 2 pkgProblemResolver with broken count: 0
178s Done
178s The following additional packages will be installed:
178s   libbrotli-dev libbz2-dev libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1
178s   libexpat1-dev libfontconfig-dev libfontconfig1-dev libfreetype-dev libgl-dev
178s   libgl1 libgl1-mesa-dri libglapi-mesa libglu1-mesa libglu1-mesa-dev libglvnd0
178s   libglx-dev libglx-mesa0 libglx0 libice-dev libice6 libllvm17t64
178s   libmotif-common libmotif-dev libmrm4 libncbi6-dev libncbi6t64 libopengl-dev
178s   libopengl0 libpkgconf3 libpng-dev libsm-dev libsm6 libuil4 libvibrant6-dev
178s   libvibrant6t64 libvulkan1 libx11-dev libx11-xcb1 libxau-dev libxcb-dri2-0
178s   libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shm0
178s   libxcb-sync1 libxcb-xfixes0 libxcb1-dev libxdmcp-dev libxext-dev libxfixes3
178s   libxft-dev libxft2 libxm4 libxmu-dev libxmu-headers libxmu6 libxrender-dev
178s   libxrender1 libxshmfence1 libxt-dev libxt6t64 libxxf86vm1 ncbi-cn3d
178s   ncbi-data ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 pkgconf pkgconf-bin
178s   uil uuid-dev x11-common x11proto-dev xorg-sgml-doctools xtrans-dev
178s   zlib1g-dev
178s Suggested packages:
178s   freetype2-doc libice-doc libsm-doc libx11-doc libxcb-doc libxext-doc
178s   libxt-doc ncbi-blast+
178s Recommended packages:
178s   bzip2-doc libgl1-amber-dri libpng-tools mesa-vulkan-drivers | vulkan-icd
178s   ncbi-blast+
179s The following NEW packages will be installed:
179s   autopkgtest-satdep libbrotli-dev libbz2-dev libdrm-amdgpu1 libdrm-nouveau2
179s   libdrm-radeon1 libexpat1-dev libfontconfig-dev libfontconfig1-dev
179s   libfreetype-dev libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglu1-mesa
179s   libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libice-dev
179s   libice6 libllvm17t64 libmotif-common libmotif-dev libmrm4 libncbi6-dev
179s   libncbi6t64 libopengl-dev libopengl0 libpkgconf3 libpng-dev libsm-dev libsm6
179s   libuil4 libvibrant6-dev libvibrant6t64 libvulkan1 libx11-dev libx11-xcb1
179s   libxau-dev libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0
179s   libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1-dev
179s   libxdmcp-dev libxext-dev libxfixes3 libxft-dev libxft2 libxm4 libxmu-dev
179s   libxmu-headers libxmu6 libxrender-dev libxrender1 libxshmfence1 libxt-dev
179s   libxt6t64 libxxf86vm1 ncbi-cn3d ncbi-data ncbi-rrna-data ncbi-tools-bin
179s   ncbi-tools-x11 pkgconf pkgconf-bin uil uuid-dev x11-common x11proto-dev
179s   xorg-sgml-doctools xtrans-dev zlib1g-dev
179s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded.
179s Need to get 111 MB/111 MB of archives.
179s After this operation, 638 MB of additional disk space will be used.
179s Get:1 /tmp/autopkgtest.ZhAabk/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [764 B]
179s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
179s Get:3 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmotif-common all 2.3.8-3.1build1 [10.1 kB]
179s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
179s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
179s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB]
179s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB]
179s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
179s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB]
179s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 libxm4 arm64 2.3.8-3.1build1 [1060 kB]
179s Get:11 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmrm4 arm64 2.3.8-3.1build1 [61.8 kB]
179s Get:12 http://ftpmaster.internal/ubuntu oracular/universe arm64 libuil4 arm64 2.3.8-3.1build1 [139 kB]
179s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 libbrotli-dev arm64 1.1.0-2build2 [360 kB]
179s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libbz2-dev arm64 1.0.8-5.1 [35.8 kB]
179s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libdrm-amdgpu1 arm64 2.4.121-2 [20.9 kB]
179s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libdrm-nouveau2 arm64 2.4.121-2 [17.8 kB]
179s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libdrm-radeon1 arm64 2.4.121-2 [20.9 kB]
179s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libexpat1-dev arm64 2.6.2-1 [128 kB]
179s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB]
179s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 libpng-dev arm64 1.6.43-5build1 [266 kB]
179s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 libfreetype-dev arm64 2.13.2+dfsg-1build3 [573 kB]
179s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 uuid-dev arm64 2.39.3-9ubuntu6 [34.8 kB]
179s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 libpkgconf3 arm64 1.8.1-3 [31.2 kB]
179s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf-bin arm64 1.8.1-3 [20.7 kB]
179s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf arm64 1.8.1-3 [16.7 kB]
179s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 libfontconfig-dev arm64 2.15.0-1.1ubuntu2 [165 kB]
179s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 libfontconfig1-dev arm64 2.15.0-1.1ubuntu2 [1840 B]
179s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB]
179s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 libglapi-mesa arm64 24.0.9-0ubuntu2 [56.1 kB]
179s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 libx11-xcb1 arm64 2:1.8.7-1build1 [7870 B]
180s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-dri2-0 arm64 1.17.0-2 [7418 B]
180s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B]
180s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB]
180s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B]
180s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB]
180s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
180s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B]
180s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB]
180s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB]
180s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B]
180s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B]
180s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 libvulkan1 arm64 1.3.283.0-1 [151 kB]
180s Get:43 http://ftpmaster.internal/ubuntu oracular/main arm64 libllvm17t64 arm64 1:17.0.6-12 [25.0 MB]
180s Get:44 http://ftpmaster.internal/ubuntu oracular/main arm64 libgl1-mesa-dri arm64 24.0.9-0ubuntu2 [8220 kB]
181s Get:45 http://ftpmaster.internal/ubuntu oracular/main arm64 libglx-mesa0 arm64 24.0.9-0ubuntu2 [164 kB]
181s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB]
181s Get:47 http://ftpmaster.internal/ubuntu oracular/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB]
181s Get:48 http://ftpmaster.internal/ubuntu oracular/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB]
181s Get:49 http://ftpmaster.internal/ubuntu oracular/main arm64 x11proto-dev all 2024.1-1 [606 kB]
181s Get:50 http://ftpmaster.internal/ubuntu oracular/main arm64 libxau-dev arm64 1:1.0.9-1build6 [10.0 kB]
181s Get:51 http://ftpmaster.internal/ubuntu oracular/main arm64 libxdmcp-dev arm64 1:1.1.3-0ubuntu6 [26.3 kB]
181s Get:52 http://ftpmaster.internal/ubuntu oracular/main arm64 xtrans-dev all 1.4.0-1 [68.9 kB]
181s Get:53 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb1-dev arm64 1.17.0-2 [91.7 kB]
181s Get:54 http://ftpmaster.internal/ubuntu oracular/main arm64 libx11-dev arm64 2:1.8.7-1build1 [742 kB]
181s Get:55 http://ftpmaster.internal/ubuntu oracular/main arm64 libglx-dev arm64 1.7.0-1build1 [14.2 kB]
181s Get:56 http://ftpmaster.internal/ubuntu oracular/main arm64 libgl-dev arm64 1.7.0-1build1 [102 kB]
181s Get:57 http://ftpmaster.internal/ubuntu oracular/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB]
181s Get:58 http://ftpmaster.internal/ubuntu oracular/main arm64 libglu1-mesa arm64 9.0.2-1.1build1 [139 kB]
181s Get:59 http://ftpmaster.internal/ubuntu oracular/main arm64 libopengl-dev arm64 1.7.0-1build1 [3440 B]
181s Get:60 http://ftpmaster.internal/ubuntu oracular/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1build1 [227 kB]
181s Get:61 http://ftpmaster.internal/ubuntu oracular/main arm64 libice-dev arm64 2:1.0.10-1build3 [52.3 kB]
181s Get:62 http://ftpmaster.internal/ubuntu oracular/universe arm64 ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB]
181s Get:63 http://ftpmaster.internal/ubuntu oracular/universe arm64 libncbi6t64 arm64 6.1.20170106+dfsg2-2 [4332 kB]
181s Get:64 http://ftpmaster.internal/ubuntu oracular/universe arm64 libncbi6-dev arm64 6.1.20170106+dfsg2-2 [6086 kB]
181s Get:65 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm-dev arm64 2:1.2.3-1build3 [18.9 kB]
181s Get:66 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender-dev arm64 1:0.9.10-1.1build1 [26.9 kB]
181s Get:67 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft-dev arm64 2.3.6-1build1 [65.0 kB]
181s Get:68 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt-dev arm64 1:1.2.1-1.2build1 [404 kB]
181s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 uil arm64 2.3.8-3.1build1 [7378 B]
181s Get:70 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmotif-dev arm64 2.3.8-3.1build1 [2618 kB]
181s Get:71 http://ftpmaster.internal/ubuntu oracular/universe arm64 libvibrant6t64 arm64 6.1.20170106+dfsg2-2 [1328 kB]
181s Get:72 http://ftpmaster.internal/ubuntu oracular/main arm64 libxext-dev arm64 2:1.3.4-1build2 [84.9 kB]
181s Get:73 http://ftpmaster.internal/ubuntu oracular/main arm64 libxmu-headers all 2:1.1.3-3build2 [53.0 kB]
181s Get:74 http://ftpmaster.internal/ubuntu oracular/main arm64 libxmu-dev arm64 2:1.1.3-3build2 [56.7 kB]
181s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 libvibrant6-dev arm64 6.1.20170106+dfsg2-2 [1712 kB]
181s Get:76 http://ftpmaster.internal/ubuntu oracular/universe arm64 ncbi-cn3d arm64 3.0.20170106+dfsg2-2 [9946 B]
181s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 ncbi-rrna-data all 6.1.20170106+dfsg2-2 [46.3 MB]
182s Get:78 http://ftpmaster.internal/ubuntu oracular/universe arm64 ncbi-tools-bin arm64 6.1.20170106+dfsg2-2 [1889 kB]
182s Get:79 http://ftpmaster.internal/ubuntu oracular/universe arm64 ncbi-tools-x11 arm64 6.1.20170106+dfsg2-2 [1029 kB]
183s Fetched 111 MB in 4s (28.4 MB/s)
183s Selecting previously unselected package x11-common.
184s (Reading database ... 
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184s Preparing to unpack .../x11-common_1%3a7.7+23ubuntu3_all.deb ...
184s Unpacking x11-common (1:7.7+23ubuntu3) ...
184s Setting up x11-common (1:7.7+23ubuntu3) ...
186s Selecting previously unselected package libmotif-common.
186s (Reading database ... 
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186s Preparing to unpack .../00-libmotif-common_2.3.8-3.1build1_all.deb ...
186s Unpacking libmotif-common (2.3.8-3.1build1) ...
186s Selecting previously unselected package libxrender1:arm64.
186s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
186s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
187s Selecting previously unselected package libxft2:arm64.
187s Preparing to unpack .../02-libxft2_2.3.6-1build1_arm64.deb ...
187s Unpacking libxft2:arm64 (2.3.6-1build1) ...
187s Selecting previously unselected package libice6:arm64.
187s Preparing to unpack .../03-libice6_2%3a1.0.10-1build3_arm64.deb ...
187s Unpacking libice6:arm64 (2:1.0.10-1build3) ...
187s Selecting previously unselected package libsm6:arm64.
187s Preparing to unpack .../04-libsm6_2%3a1.2.3-1build3_arm64.deb ...
187s Unpacking libsm6:arm64 (2:1.2.3-1build3) ...
187s Selecting previously unselected package libxt6t64:arm64.
187s Preparing to unpack .../05-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ...
187s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ...
187s Selecting previously unselected package libxmu6:arm64.
187s Preparing to unpack .../06-libxmu6_2%3a1.1.3-3build2_arm64.deb ...
187s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ...
187s Selecting previously unselected package libxm4:arm64.
187s Preparing to unpack .../07-libxm4_2.3.8-3.1build1_arm64.deb ...
187s Unpacking libxm4:arm64 (2.3.8-3.1build1) ...
188s Selecting previously unselected package libmrm4:arm64.
188s Preparing to unpack .../08-libmrm4_2.3.8-3.1build1_arm64.deb ...
188s Unpacking libmrm4:arm64 (2.3.8-3.1build1) ...
188s Selecting previously unselected package libuil4:arm64.
188s Preparing to unpack .../09-libuil4_2.3.8-3.1build1_arm64.deb ...
188s Unpacking libuil4:arm64 (2.3.8-3.1build1) ...
188s Selecting previously unselected package libbrotli-dev:arm64.
188s Preparing to unpack .../10-libbrotli-dev_1.1.0-2build2_arm64.deb ...
188s Unpacking libbrotli-dev:arm64 (1.1.0-2build2) ...
188s Selecting previously unselected package libbz2-dev:arm64.
188s Preparing to unpack .../11-libbz2-dev_1.0.8-5.1_arm64.deb ...
188s Unpacking libbz2-dev:arm64 (1.0.8-5.1) ...
188s Selecting previously unselected package libdrm-amdgpu1:arm64.
188s Preparing to unpack .../12-libdrm-amdgpu1_2.4.121-2_arm64.deb ...
188s Unpacking libdrm-amdgpu1:arm64 (2.4.121-2) ...
188s Selecting previously unselected package libdrm-nouveau2:arm64.
188s Preparing to unpack .../13-libdrm-nouveau2_2.4.121-2_arm64.deb ...
188s Unpacking libdrm-nouveau2:arm64 (2.4.121-2) ...
188s Selecting previously unselected package libdrm-radeon1:arm64.
188s Preparing to unpack .../14-libdrm-radeon1_2.4.121-2_arm64.deb ...
188s Unpacking libdrm-radeon1:arm64 (2.4.121-2) ...
188s Selecting previously unselected package libexpat1-dev:arm64.
188s Preparing to unpack .../15-libexpat1-dev_2.6.2-1_arm64.deb ...
188s Unpacking libexpat1-dev:arm64 (2.6.2-1) ...
188s Selecting previously unselected package zlib1g-dev:arm64.
188s Preparing to unpack .../16-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ...
188s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ...
188s Selecting previously unselected package libpng-dev:arm64.
188s Preparing to unpack .../17-libpng-dev_1.6.43-5build1_arm64.deb ...
188s Unpacking libpng-dev:arm64 (1.6.43-5build1) ...
188s Selecting previously unselected package libfreetype-dev:arm64.
188s Preparing to unpack .../18-libfreetype-dev_2.13.2+dfsg-1build3_arm64.deb ...
188s Unpacking libfreetype-dev:arm64 (2.13.2+dfsg-1build3) ...
189s Selecting previously unselected package uuid-dev:arm64.
189s Preparing to unpack .../19-uuid-dev_2.39.3-9ubuntu6_arm64.deb ...
189s Unpacking uuid-dev:arm64 (2.39.3-9ubuntu6) ...
189s Selecting previously unselected package libpkgconf3:arm64.
189s Preparing to unpack .../20-libpkgconf3_1.8.1-3_arm64.deb ...
189s Unpacking libpkgconf3:arm64 (1.8.1-3) ...
189s Selecting previously unselected package pkgconf-bin.
189s Preparing to unpack .../21-pkgconf-bin_1.8.1-3_arm64.deb ...
189s Unpacking pkgconf-bin (1.8.1-3) ...
189s Selecting previously unselected package pkgconf:arm64.
189s Preparing to unpack .../22-pkgconf_1.8.1-3_arm64.deb ...
189s Unpacking pkgconf:arm64 (1.8.1-3) ...
189s Selecting previously unselected package libfontconfig-dev:arm64.
189s Preparing to unpack .../23-libfontconfig-dev_2.15.0-1.1ubuntu2_arm64.deb ...
189s Unpacking libfontconfig-dev:arm64 (2.15.0-1.1ubuntu2) ...
189s Selecting previously unselected package libfontconfig1-dev:arm64.
189s Preparing to unpack .../24-libfontconfig1-dev_2.15.0-1.1ubuntu2_arm64.deb ...
189s Unpacking libfontconfig1-dev:arm64 (2.15.0-1.1ubuntu2) ...
189s Selecting previously unselected package libglvnd0:arm64.
189s Preparing to unpack .../25-libglvnd0_1.7.0-1build1_arm64.deb ...
189s Unpacking libglvnd0:arm64 (1.7.0-1build1) ...
189s Selecting previously unselected package libglapi-mesa:arm64.
190s Preparing to unpack .../26-libglapi-mesa_24.0.9-0ubuntu2_arm64.deb ...
190s Unpacking libglapi-mesa:arm64 (24.0.9-0ubuntu2) ...
190s Selecting previously unselected package libx11-xcb1:arm64.
190s Preparing to unpack .../27-libx11-xcb1_2%3a1.8.7-1build1_arm64.deb ...
190s Unpacking libx11-xcb1:arm64 (2:1.8.7-1build1) ...
190s Selecting previously unselected package libxcb-dri2-0:arm64.
190s Preparing to unpack .../28-libxcb-dri2-0_1.17.0-2_arm64.deb ...
190s Unpacking libxcb-dri2-0:arm64 (1.17.0-2) ...
190s Selecting previously unselected package libxcb-dri3-0:arm64.
190s Preparing to unpack .../29-libxcb-dri3-0_1.17.0-2_arm64.deb ...
190s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ...
190s Selecting previously unselected package libxcb-glx0:arm64.
190s Preparing to unpack .../30-libxcb-glx0_1.17.0-2_arm64.deb ...
190s Unpacking libxcb-glx0:arm64 (1.17.0-2) ...
190s Selecting previously unselected package libxcb-present0:arm64.
190s Preparing to unpack .../31-libxcb-present0_1.17.0-2_arm64.deb ...
190s Unpacking libxcb-present0:arm64 (1.17.0-2) ...
190s Selecting previously unselected package libxcb-randr0:arm64.
190s Preparing to unpack .../32-libxcb-randr0_1.17.0-2_arm64.deb ...
190s Unpacking libxcb-randr0:arm64 (1.17.0-2) ...
190s Selecting previously unselected package libxcb-shm0:arm64.
190s Preparing to unpack .../33-libxcb-shm0_1.17.0-2_arm64.deb ...
190s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
190s Selecting previously unselected package libxcb-sync1:arm64.
190s Preparing to unpack .../34-libxcb-sync1_1.17.0-2_arm64.deb ...
190s Unpacking libxcb-sync1:arm64 (1.17.0-2) ...
190s Selecting previously unselected package libxcb-xfixes0:arm64.
190s Preparing to unpack .../35-libxcb-xfixes0_1.17.0-2_arm64.deb ...
190s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ...
190s Selecting previously unselected package libxfixes3:arm64.
190s Preparing to unpack .../36-libxfixes3_1%3a6.0.0-2build1_arm64.deb ...
190s Unpacking libxfixes3:arm64 (1:6.0.0-2build1) ...
190s Selecting previously unselected package libxshmfence1:arm64.
190s Preparing to unpack .../37-libxshmfence1_1.3-1build5_arm64.deb ...
190s Unpacking libxshmfence1:arm64 (1.3-1build5) ...
190s Selecting previously unselected package libxxf86vm1:arm64.
191s Preparing to unpack .../38-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ...
191s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ...
191s Selecting previously unselected package libvulkan1:arm64.
191s Preparing to unpack .../39-libvulkan1_1.3.283.0-1_arm64.deb ...
191s Unpacking libvulkan1:arm64 (1.3.283.0-1) ...
191s Selecting previously unselected package libllvm17t64:arm64.
191s Preparing to unpack .../40-libllvm17t64_1%3a17.0.6-12_arm64.deb ...
191s Unpacking libllvm17t64:arm64 (1:17.0.6-12) ...
191s Selecting previously unselected package libgl1-mesa-dri:arm64.
192s Preparing to unpack .../41-libgl1-mesa-dri_24.0.9-0ubuntu2_arm64.deb ...
192s Unpacking libgl1-mesa-dri:arm64 (24.0.9-0ubuntu2) ...
192s Selecting previously unselected package libglx-mesa0:arm64.
192s Preparing to unpack .../42-libglx-mesa0_24.0.9-0ubuntu2_arm64.deb ...
192s Unpacking libglx-mesa0:arm64 (24.0.9-0ubuntu2) ...
192s Selecting previously unselected package libglx0:arm64.
192s Preparing to unpack .../43-libglx0_1.7.0-1build1_arm64.deb ...
192s Unpacking libglx0:arm64 (1.7.0-1build1) ...
192s Selecting previously unselected package libgl1:arm64.
192s Preparing to unpack .../44-libgl1_1.7.0-1build1_arm64.deb ...
192s Unpacking libgl1:arm64 (1.7.0-1build1) ...
192s Selecting previously unselected package xorg-sgml-doctools.
192s Preparing to unpack .../45-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ...
192s Unpacking xorg-sgml-doctools (1:1.11-1.1) ...
192s Selecting previously unselected package x11proto-dev.
193s Preparing to unpack .../46-x11proto-dev_2024.1-1_all.deb ...
193s Unpacking x11proto-dev (2024.1-1) ...
193s Selecting previously unselected package libxau-dev:arm64.
193s Preparing to unpack .../47-libxau-dev_1%3a1.0.9-1build6_arm64.deb ...
193s Unpacking libxau-dev:arm64 (1:1.0.9-1build6) ...
193s Selecting previously unselected package libxdmcp-dev:arm64.
193s Preparing to unpack .../48-libxdmcp-dev_1%3a1.1.3-0ubuntu6_arm64.deb ...
193s Unpacking libxdmcp-dev:arm64 (1:1.1.3-0ubuntu6) ...
193s Selecting previously unselected package xtrans-dev.
193s Preparing to unpack .../49-xtrans-dev_1.4.0-1_all.deb ...
193s Unpacking xtrans-dev (1.4.0-1) ...
193s Selecting previously unselected package libxcb1-dev:arm64.
193s Preparing to unpack .../50-libxcb1-dev_1.17.0-2_arm64.deb ...
193s Unpacking libxcb1-dev:arm64 (1.17.0-2) ...
193s Selecting previously unselected package libx11-dev:arm64.
193s Preparing to unpack .../51-libx11-dev_2%3a1.8.7-1build1_arm64.deb ...
193s Unpacking libx11-dev:arm64 (2:1.8.7-1build1) ...
193s Selecting previously unselected package libglx-dev:arm64.
193s Preparing to unpack .../52-libglx-dev_1.7.0-1build1_arm64.deb ...
193s Unpacking libglx-dev:arm64 (1.7.0-1build1) ...
193s Selecting previously unselected package libgl-dev:arm64.
193s Preparing to unpack .../53-libgl-dev_1.7.0-1build1_arm64.deb ...
193s Unpacking libgl-dev:arm64 (1.7.0-1build1) ...
193s Selecting previously unselected package libopengl0:arm64.
193s Preparing to unpack .../54-libopengl0_1.7.0-1build1_arm64.deb ...
193s Unpacking libopengl0:arm64 (1.7.0-1build1) ...
193s Selecting previously unselected package libglu1-mesa:arm64.
193s Preparing to unpack .../55-libglu1-mesa_9.0.2-1.1build1_arm64.deb ...
193s Unpacking libglu1-mesa:arm64 (9.0.2-1.1build1) ...
193s Selecting previously unselected package libopengl-dev:arm64.
193s Preparing to unpack .../56-libopengl-dev_1.7.0-1build1_arm64.deb ...
193s Unpacking libopengl-dev:arm64 (1.7.0-1build1) ...
193s Selecting previously unselected package libglu1-mesa-dev:arm64.
193s Preparing to unpack .../57-libglu1-mesa-dev_9.0.2-1.1build1_arm64.deb ...
193s Unpacking libglu1-mesa-dev:arm64 (9.0.2-1.1build1) ...
193s Selecting previously unselected package libice-dev:arm64.
194s Preparing to unpack .../58-libice-dev_2%3a1.0.10-1build3_arm64.deb ...
194s Unpacking libice-dev:arm64 (2:1.0.10-1build3) ...
194s Selecting previously unselected package ncbi-data.
194s Preparing to unpack .../59-ncbi-data_6.1.20170106+dfsg2-2_all.deb ...
194s Unpacking ncbi-data (6.1.20170106+dfsg2-2) ...
194s Selecting previously unselected package libncbi6t64:arm64.
194s Preparing to unpack .../60-libncbi6t64_6.1.20170106+dfsg2-2_arm64.deb ...
194s Unpacking libncbi6t64:arm64 (6.1.20170106+dfsg2-2) ...
194s Selecting previously unselected package libncbi6-dev:arm64.
195s Preparing to unpack .../61-libncbi6-dev_6.1.20170106+dfsg2-2_arm64.deb ...
195s Unpacking libncbi6-dev:arm64 (6.1.20170106+dfsg2-2) ...
195s Selecting previously unselected package libsm-dev:arm64.
195s Preparing to unpack .../62-libsm-dev_2%3a1.2.3-1build3_arm64.deb ...
195s Unpacking libsm-dev:arm64 (2:1.2.3-1build3) ...
195s Selecting previously unselected package libxrender-dev:arm64.
195s Preparing to unpack .../63-libxrender-dev_1%3a0.9.10-1.1build1_arm64.deb ...
195s Unpacking libxrender-dev:arm64 (1:0.9.10-1.1build1) ...
195s Selecting previously unselected package libxft-dev:arm64.
195s Preparing to unpack .../64-libxft-dev_2.3.6-1build1_arm64.deb ...
195s Unpacking libxft-dev:arm64 (2.3.6-1build1) ...
195s Selecting previously unselected package libxt-dev:arm64.
196s Preparing to unpack .../65-libxt-dev_1%3a1.2.1-1.2build1_arm64.deb ...
196s Unpacking libxt-dev:arm64 (1:1.2.1-1.2build1) ...
196s Selecting previously unselected package uil.
196s Preparing to unpack .../66-uil_2.3.8-3.1build1_arm64.deb ...
196s Unpacking uil (2.3.8-3.1build1) ...
197s Selecting previously unselected package libmotif-dev:arm64.
197s Preparing to unpack .../67-libmotif-dev_2.3.8-3.1build1_arm64.deb ...
197s Unpacking libmotif-dev:arm64 (2.3.8-3.1build1) ...
197s Selecting previously unselected package libvibrant6t64:arm64.
197s Preparing to unpack .../68-libvibrant6t64_6.1.20170106+dfsg2-2_arm64.deb ...
197s Unpacking libvibrant6t64:arm64 (6.1.20170106+dfsg2-2) ...
197s Selecting previously unselected package libxext-dev:arm64.
197s Preparing to unpack .../69-libxext-dev_2%3a1.3.4-1build2_arm64.deb ...
197s Unpacking libxext-dev:arm64 (2:1.3.4-1build2) ...
197s Selecting previously unselected package libxmu-headers.
197s Preparing to unpack .../70-libxmu-headers_2%3a1.1.3-3build2_all.deb ...
197s Unpacking libxmu-headers (2:1.1.3-3build2) ...
197s Selecting previously unselected package libxmu-dev:arm64.
197s Preparing to unpack .../71-libxmu-dev_2%3a1.1.3-3build2_arm64.deb ...
197s Unpacking libxmu-dev:arm64 (2:1.1.3-3build2) ...
198s Selecting previously unselected package libvibrant6-dev:arm64.
198s Preparing to unpack .../72-libvibrant6-dev_6.1.20170106+dfsg2-2_arm64.deb ...
198s Unpacking libvibrant6-dev:arm64 (6.1.20170106+dfsg2-2) ...
198s Selecting previously unselected package ncbi-cn3d.
198s Preparing to unpack .../73-ncbi-cn3d_3.0.20170106+dfsg2-2_arm64.deb ...
198s Unpacking ncbi-cn3d (3.0.20170106+dfsg2-2) ...
198s Selecting previously unselected package ncbi-rrna-data.
198s Preparing to unpack .../74-ncbi-rrna-data_6.1.20170106+dfsg2-2_all.deb ...
198s Unpacking ncbi-rrna-data (6.1.20170106+dfsg2-2) ...
201s Selecting previously unselected package ncbi-tools-bin.
201s Preparing to unpack .../75-ncbi-tools-bin_6.1.20170106+dfsg2-2_arm64.deb ...
201s Unpacking ncbi-tools-bin (6.1.20170106+dfsg2-2) ...
201s Selecting previously unselected package ncbi-tools-x11.
201s Preparing to unpack .../76-ncbi-tools-x11_6.1.20170106+dfsg2-2_arm64.deb ...
201s Unpacking ncbi-tools-x11 (6.1.20170106+dfsg2-2) ...
201s Selecting previously unselected package autopkgtest-satdep.
201s Preparing to unpack .../77-1-autopkgtest-satdep.deb ...
201s Unpacking autopkgtest-satdep (0) ...
201s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ...
202s Setting up ncbi-data (6.1.20170106+dfsg2-2) ...
202s Setting up libx11-xcb1:arm64 (2:1.8.7-1build1) ...
202s Setting up libice6:arm64 (2:1.0.10-1build3) ...
202s Setting up libdrm-nouveau2:arm64 (2.4.121-2) ...
202s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ...
202s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
202s Setting up libdrm-radeon1:arm64 (2.4.121-2) ...
202s Setting up libglvnd0:arm64 (1.7.0-1build1) ...
202s Setting up libxcb-glx0:arm64 (1.17.0-2) ...
202s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
202s Setting up libmotif-common (2.3.8-3.1build1) ...
202s Setting up libopengl0:arm64 (1.7.0-1build1) ...
202s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ...
202s Setting up libxcb-present0:arm64 (1.17.0-2) ...
202s Setting up libncbi6t64:arm64 (6.1.20170106+dfsg2-2) ...
202s Setting up xtrans-dev (1.4.0-1) ...
202s Setting up libpkgconf3:arm64 (1.8.1-3) ...
202s Setting up libllvm17t64:arm64 (1:17.0.6-12) ...
202s Setting up libexpat1-dev:arm64 (2.6.2-1) ...
202s Setting up libxfixes3:arm64 (1:6.0.0-2build1) ...
202s Setting up libxcb-sync1:arm64 (1.17.0-2) ...
202s Setting up uuid-dev:arm64 (2.39.3-9ubuntu6) ...
202s Setting up pkgconf-bin (1.8.1-3) ...
202s Setting up libglapi-mesa:arm64 (24.0.9-0ubuntu2) ...
202s Setting up libvulkan1:arm64 (1.3.283.0-1) ...
202s Setting up libxcb-dri2-0:arm64 (1.17.0-2) ...
202s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ...
202s Setting up ncbi-tools-bin (6.1.20170106+dfsg2-2) ...
202s Setting up libxshmfence1:arm64 (1.3-1build5) ...
202s Setting up libxcb-randr0:arm64 (1.17.0-2) ...
202s Setting up xorg-sgml-doctools (1:1.11-1.1) ...
202s Setting up libglu1-mesa:arm64 (9.0.2-1.1build1) ...
202s Setting up libopengl-dev:arm64 (1.7.0-1build1) ...
202s Setting up libsm6:arm64 (2:1.2.3-1build3) ...
202s Setting up libbrotli-dev:arm64 (1.1.0-2build2) ...
202s Setting up ncbi-rrna-data (6.1.20170106+dfsg2-2) ...
202s Setting up libdrm-amdgpu1:arm64 (2.4.121-2) ...
202s Setting up libbz2-dev:arm64 (1.0.8-5.1) ...
202s Setting up x11proto-dev (2024.1-1) ...
202s Setting up libncbi6-dev:arm64 (6.1.20170106+dfsg2-2) ...
202s Setting up libxft2:arm64 (2.3.6-1build1) ...
202s Setting up libxau-dev:arm64 (1:1.0.9-1build6) ...
202s Setting up libice-dev:arm64 (2:1.0.10-1build3) ...
202s Setting up libsm-dev:arm64 (2:1.2.3-1build3) ...
202s Setting up libgl1-mesa-dri:arm64 (24.0.9-0ubuntu2) ...
202s Setting up libpng-dev:arm64 (1.6.43-5build1) ...
202s Setting up pkgconf:arm64 (1.8.1-3) ...
202s Setting up libfreetype-dev:arm64 (2.13.2+dfsg-1build3) ...
202s Setting up libxdmcp-dev:arm64 (1:1.1.3-0ubuntu6) ...
202s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
202s Setting up libxmu6:arm64 (2:1.1.3-3build2) ...
202s Setting up libglx-mesa0:arm64 (24.0.9-0ubuntu2) ...
202s Setting up libxcb1-dev:arm64 (1.17.0-2) ...
202s Setting up libglx0:arm64 (1.7.0-1build1) ...
202s Setting up libfontconfig-dev:arm64 (2.15.0-1.1ubuntu2) ...
202s Setting up libx11-dev:arm64 (2:1.8.7-1build1) ...
202s Setting up libgl1:arm64 (1.7.0-1build1) ...
202s Setting up libxt-dev:arm64 (1:1.2.1-1.2build1) ...
202s Setting up libxext-dev:arm64 (2:1.3.4-1build2) ...
202s Setting up libglx-dev:arm64 (1.7.0-1build1) ...
202s Setting up libxrender-dev:arm64 (1:0.9.10-1.1build1) ...
202s Setting up libgl-dev:arm64 (1.7.0-1build1) ...
202s Setting up libxm4:arm64 (2.3.8-3.1build1) ...
202s Setting up libxft-dev:arm64 (2.3.6-1build1) ...
202s Setting up libxmu-headers (2:1.1.3-3build2) ...
202s Setting up libfontconfig1-dev:arm64 (2.15.0-1.1ubuntu2) ...
202s Setting up libxmu-dev:arm64 (2:1.1.3-3build2) ...
202s Setting up libvibrant6t64:arm64 (6.1.20170106+dfsg2-2) ...
202s Setting up libmrm4:arm64 (2.3.8-3.1build1) ...
202s Setting up libglu1-mesa-dev:arm64 (9.0.2-1.1build1) ...
202s Setting up libuil4:arm64 (2.3.8-3.1build1) ...
202s Setting up uil (2.3.8-3.1build1) ...
202s Setting up libmotif-dev:arm64 (2.3.8-3.1build1) ...
202s Setting up ncbi-cn3d (3.0.20170106+dfsg2-2) ...
202s update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode
202s Setting up ncbi-tools-x11 (6.1.20170106+dfsg2-2) ...
202s Setting up libvibrant6-dev:arm64 (6.1.20170106+dfsg2-2) ...
202s Setting up autopkgtest-satdep (0) ...
202s Processing triggers for man-db (2.12.1-2) ...
203s Processing triggers for libc-bin (2.39-3.1ubuntu3) ...
215s (Reading database ... 81842 files and directories currently installed.)
215s Removing autopkgtest-satdep (0) ...
215s autopkgtest [01:14:48]: test run-unit-test: [-----------------------
216s ---asn2asn test---
217s ---asn2all test---
218s ---asn2fsa test---
218s ---asn2gb test---
219s ---asn2idx test---
220s ---asn2xml test---
220s ---cleanasn test---
220s ---gene2xml test---
221s ---vecscreen test---
226s ---asndisc test---
229s ---asnval test---
230s ---asnmacro test---
234s ---asntool test---
234s ---indexpub test---
234s ---getpub test---
234s ---getmesh test---
234s ---debruijn test---
234s ---gil2bin test---
234s ---makeset test---
234s ---nps2gps test---
234s [nps2gps] Processing X66994.1 (idfetch_g1234.npset)
234s ---tbl2asn test---
234s ---checksub test---
234s ---fa2htgs test---
234s ---subfuse test---
234s [subfuse] Processing checksub
234s 
234s [subfuse] Processing Sc_16
234s 
234s ---trna2sap test---
234s ---trna2tbl test---
234s ---spidey test---
235s autopkgtest [01:15:08]: test run-unit-test: -----------------------]
235s autopkgtest [01:15:08]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
235s run-unit-test        PASS
236s autopkgtest [01:15:09]: @@@@@@@@@@@@@@@@@@@@ summary
236s run-unit-test        PASS
262s nova [W] Skipping flock in bos03-arm64
262s Creating nova instance adt-oracular-arm64-ncbi-tools6-20240713-011113-juju-7f2275-prod-proposed-migration-environment-2-4972cd3d-6b77-4925-8623-f50abd29bff8 from image adt/ubuntu-oracular-arm64-server-20240712.img (UUID a9c53646-2a41-49d7-a14b-d40262a2cb6c)...