0s autopkgtest [20:42:31]: starting date and time: 2024-07-12 20:42:31+0000 0s autopkgtest [20:42:31]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [20:42:31]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nz1z6gge/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade libedlib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-3.secgroup --name adt-oracular-arm64-libedlib-20240712-204231-juju-7f2275-prod-proposed-migration-environment-3-a42b2c31-9ccd-4c77-992e-f3b59db892a7 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 395s autopkgtest [20:49:06]: testbed dpkg architecture: arm64 398s autopkgtest [20:49:09]: testbed apt version: 2.9.6 398s autopkgtest [20:49:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 401s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 404s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3288 B] 404s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 404s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.5 kB] 404s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [367 kB] 404s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [89.4 kB] 404s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2128 B] 404s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 404s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 404s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [366 kB] 404s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8240 B] 404s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [7928 B] 404s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B] 409s Fetched 1069 kB in 4s (249 kB/s) 410s Reading package lists... 415s Reading package lists... 415s Building dependency tree... 415s Reading state information... 416s Calculating upgrade... 416s The following packages will be upgraded: 416s inetutils-telnet libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 416s openssh-client openssh-server openssh-sftp-server telnet 416s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 416s Need to get 10.7 MB of archives. 416s After this operation, 28.7 kB disk space will be freed. 416s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-devtools arm64 2.39-3.1ubuntu3 [27.7 kB] 416s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6-dev arm64 2.39-3.1ubuntu3 [1591 kB] 417s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-dev-bin arm64 2.39-3.1ubuntu3 [19.7 kB] 417s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6 arm64 2.39-3.1ubuntu3 [2770 kB] 417s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-bin arm64 2.39-3.1ubuntu3 [579 kB] 417s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-sftp-server arm64 1:9.6p1-3ubuntu17 [36.7 kB] 417s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-server arm64 1:9.6p1-3ubuntu17 [502 kB] 417s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 openssh-client arm64 1:9.6p1-3ubuntu17 [888 kB] 417s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 locales all 2.39-3.1ubuntu3 [4220 kB] 417s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 inetutils-telnet arm64 2:2.5-5ubuntu1 [103 kB] 417s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 telnet all 0.17+2.5-5ubuntu1 [3688 B] 419s Preconfiguring packages ... 419s Fetched 10.7 MB in 1s (8983 kB/s) 420s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78392 files and directories currently installed.) 420s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_arm64.deb ... 420s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 420s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_arm64.deb ... 420s Unpacking libc6-dev:arm64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 422s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_arm64.deb ... 422s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 424s Preparing to unpack .../libc6_2.39-3.1ubuntu3_arm64.deb ... 427s Unpacking libc6:arm64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 429s Setting up libc6:arm64 (2.39-3.1ubuntu3) ... 429s Error: Could not restart systemd, systemd binary not working 431s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78392 files and directories currently installed.) 431s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_arm64.deb ... 431s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 432s Setting up libc-bin (2.39-3.1ubuntu3) ... 433s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78392 files and directories currently installed.) 433s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_arm64.deb ... 433s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 435s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_arm64.deb ... 436s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 438s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_arm64.deb ... 438s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 442s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ... 442s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 446s Preparing to unpack .../4-inetutils-telnet_2%3a2.5-5ubuntu1_arm64.deb ... 446s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 446s Preparing to unpack .../5-telnet_0.17+2.5-5ubuntu1_all.deb ... 446s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 447s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 447s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 447s Setting up locales (2.39-3.1ubuntu3) ... 452s Generating locales (this might take a while)... 461s en_US.UTF-8... done 461s Generation complete. 461s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 461s Setting up libc-devtools (2.39-3.1ubuntu3) ... 461s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 461s Setting up telnet (0.17+2.5-5ubuntu1) ... 461s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 461s Installing new version of config file /etc/pam.d/sshd ... 468s Setting up libc6-dev:arm64 (2.39-3.1ubuntu3) ... 468s Processing triggers for systemd (256-1ubuntu1) ... 471s Processing triggers for man-db (2.12.1-2) ... 472s Processing triggers for ufw (0.36.2-6) ... 473s Reading package lists... 473s Building dependency tree... 473s Reading state information... 474s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 476s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 477s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 477s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 477s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 484s Reading package lists... 484s Reading package lists... 485s Building dependency tree... 485s Reading state information... 485s Calculating upgrade... 486s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 486s Reading package lists... 486s Building dependency tree... 486s Reading state information... 487s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 487s autopkgtest [20:50:38]: rebooting testbed after setup commands that affected boot 492s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 525s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 538s autopkgtest [20:51:29]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 542s autopkgtest [20:51:33]: @@@@@@@@@@@@@@@@@@@@ apt-source libedlib 551s Get:1 http://ftpmaster.internal/ubuntu oracular/universe libedlib 1.2.7-5build1 (dsc) [2309 B] 551s Get:2 http://ftpmaster.internal/ubuntu oracular/universe libedlib 1.2.7-5build1 (tar) [4319 kB] 551s Get:3 http://ftpmaster.internal/ubuntu oracular/universe libedlib 1.2.7-5build1 (diff) [7568 B] 552s gpgv: Signature made Mon Apr 1 04:43:53 2024 UTC 552s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 552s gpgv: Can't check signature: No public key 552s dpkg-source: warning: cannot verify inline signature for ./libedlib_1.2.7-5build1.dsc: no acceptable signature found 553s autopkgtest [20:51:44]: testing package libedlib version 1.2.7-5build1 553s autopkgtest [20:51:44]: build not needed 554s autopkgtest [20:51:45]: test run-unit-test: preparing testbed 556s Reading package lists... 556s Building dependency tree... 556s Reading state information... 556s Starting pkgProblemResolver with broken count: 0 556s Starting 2 pkgProblemResolver with broken count: 0 556s Done 557s The following additional packages will be installed: 557s edlib-aligner libedlib-dev libedlib1 python3-edlib 557s The following NEW packages will be installed: 557s autopkgtest-satdep edlib-aligner libedlib-dev libedlib1 python3-edlib 557s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 557s Need to get 128 kB/129 kB of archives. 557s After this operation, 466 kB of additional disk space will be used. 557s Get:1 /tmp/autopkgtest.5ncGH6/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B] 557s Get:2 http://ftpmaster.internal/ubuntu oracular/universe arm64 libedlib1 arm64 1.2.7-5build1 [18.1 kB] 557s Get:3 http://ftpmaster.internal/ubuntu oracular/universe arm64 edlib-aligner arm64 1.2.7-5build1 [24.0 kB] 557s Get:4 http://ftpmaster.internal/ubuntu oracular/universe arm64 libedlib-dev arm64 1.2.7-5build1 [22.2 kB] 558s Get:5 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-edlib arm64 1.2.7-5build1 [63.9 kB] 559s Fetched 128 kB in 0s (264 kB/s) 559s Selecting previously unselected package libedlib1:arm64. 560s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78392 files and directories currently installed.) 560s Preparing to unpack .../libedlib1_1.2.7-5build1_arm64.deb ... 560s Unpacking libedlib1:arm64 (1.2.7-5build1) ... 560s Selecting previously unselected package edlib-aligner. 560s Preparing to unpack .../edlib-aligner_1.2.7-5build1_arm64.deb ... 560s Unpacking edlib-aligner (1.2.7-5build1) ... 560s Selecting previously unselected package libedlib-dev:arm64. 560s Preparing to unpack .../libedlib-dev_1.2.7-5build1_arm64.deb ... 560s Unpacking libedlib-dev:arm64 (1.2.7-5build1) ... 560s Selecting previously unselected package python3-edlib:arm64. 560s Preparing to unpack .../python3-edlib_1.2.7-5build1_arm64.deb ... 560s Unpacking python3-edlib:arm64 (1.2.7-5build1) ... 560s Selecting previously unselected package autopkgtest-satdep. 561s Preparing to unpack .../1-autopkgtest-satdep.deb ... 561s Unpacking autopkgtest-satdep (0) ... 561s Setting up libedlib1:arm64 (1.2.7-5build1) ... 561s Setting up python3-edlib:arm64 (1.2.7-5build1) ... 561s Setting up edlib-aligner (1.2.7-5build1) ... 561s Setting up libedlib-dev:arm64 (1.2.7-5build1) ... 561s Setting up autopkgtest-satdep (0) ... 561s Processing triggers for man-db (2.12.1-2) ... 562s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 568s (Reading database ... 78428 files and directories currently installed.) 568s Removing autopkgtest-satdep (0) ... 568s autopkgtest [20:51:59]: test run-unit-test: [----------------------- 569s Using NW alignment mode. 569s Reading queries... 569s Read 1 queries, 110 residues total. 569s Reading target fasta file... 569s Read target, 109 residues. 569s 569s Comparing queries to target... 569s 569s Query #0 (110 residues): score = 17 569s T: MMEEERFAASADEIFHVTQEVC-RTASELTESESRNVIVDELFCVGVTEM (0 - 48) 569s ||||||| | |||||||||| ||||||||||||||||||||||||||| 569s Q: MMEEERFKA---EIFHVTQEVCNRTASELTESESRNVIVDELFCVGVTEM (0 - 46) 569s 569s T: VAEQIRVLAKDIEA---HA-RKTVQPQDVLDDLCCRRNEGL-EIINNF-K (49 - 92) 569s | |||||||||||| || |||||||||| ||||||||| |||||| | 569s Q: VWEQIRVLAKDIEAFAEHAGRKTVQPQDVL--LCCRRNEGLYEIINNFHK (47 - 94) 569s 569s T: AESIKSKKKKKE-STTB (93 - 108) 569s ||||||||||| ||| 569s Q: -ESIKSKKKKKENSTT- (94 - 109) 569s 569s 569s Cpu time of searching: 0.000053 569s autopkgtest [20:52:00]: test run-unit-test: -----------------------] 570s run-unit-test PASS 570s autopkgtest [20:52:01]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 571s autopkgtest [20:52:02]: @@@@@@@@@@@@@@@@@@@@ summary 571s run-unit-test PASS 618s nova [W] Skipping flock in bos03-arm64 618s Creating nova instance adt-oracular-arm64-libedlib-20240712-204231-juju-7f2275-prod-proposed-migration-environment-3-a42b2c31-9ccd-4c77-992e-f3b59db892a7 from image adt/ubuntu-oracular-arm64-server-20240712.img (UUID a9c53646-2a41-49d7-a14b-d40262a2cb6c)...