0s autopkgtest [09:32:02]: starting date and time: 2024-06-08 09:32:02+0000
  0s autopkgtest [09:32:02]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod'
  0s autopkgtest [09:32:02]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c9gpa5ix/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-8.secgroup --name adt-oracular-arm64-gudhi-20240608-093202-juju-7f2275-prod-proposed-migration-environment-3-989fd130-63d6-465f-bd5a-3c139c0a5941 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 82s autopkgtest [09:33:24]: testbed dpkg architecture: arm64
 82s autopkgtest [09:33:24]: testbed apt version: 2.9.3
 82s autopkgtest [09:33:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 82s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB]
 83s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [1680 B]
 83s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [334 kB]
 83s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B]
 83s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.2 kB]
 83s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [67.7 kB]
 83s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [31.8 kB]
 83s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [296 kB]
 83s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [9192 B]
 83s Fetched 903 kB in 1s (903 kB/s)
 83s Reading package lists...
 86s Reading package lists...
 86s Building dependency tree...
 86s Reading state information...
 87s Calculating upgrade...
 87s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 87s Reading package lists...
 87s Building dependency tree...
 87s Reading state information...
 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 89s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease
 89s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease
 89s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease
 89s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
 90s Reading package lists...
 91s Reading package lists...
 91s Building dependency tree...
 91s Reading state information...
 91s Calculating upgrade...
 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 92s Reading package lists...
 92s Building dependency tree...
 92s Reading state information...
 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 98s autopkgtest [09:33:40]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024
 98s autopkgtest [09:33:40]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi
105s Get:1 http://ftpmaster.internal/ubuntu oracular/universe gudhi 3.9.0+dfsg-1build3 (dsc) [3361 B]
105s Get:2 http://ftpmaster.internal/ubuntu oracular/universe gudhi 3.9.0+dfsg-1build3 (tar) [17.7 MB]
105s Get:3 http://ftpmaster.internal/ubuntu oracular/universe gudhi 3.9.0+dfsg-1build3 (diff) [11.4 kB]
105s gpgv: Signature made Fri Apr 12 05:22:35 2024 UTC
105s gpgv:                using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D
105s gpgv:                issuer "steve.langasek@ubuntu.com"
105s gpgv: Can't check signature: No public key
105s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.9.0+dfsg-1build3.dsc: no acceptable signature found
110s autopkgtest [09:33:52]: testing package gudhi version 3.9.0+dfsg-1build3
110s autopkgtest [09:33:52]: build not needed
115s autopkgtest [09:33:57]: test python-upstream.sh: preparing testbed
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s Starting pkgProblemResolver with broken count: 0
119s Starting 2 pkgProblemResolver with broken count: 0
119s Done
120s The following additional packages will be installed:
120s   blt fonts-lyx libblas3 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
120s   libhwloc15 libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
120s   liblcms2-2 libopenjp2-7 libqhull-r8.0 libraqm0 libtbb12 libtbbbind-2-5
120s   libtbbmalloc2 libtcl8.6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2
120s   libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all
120s   python3-appdirs python3-brotli python3-contourpy python3-cycler
120s   python3-dateutil python3-decorator python3-eagerpy python3-fonttools
120s   python3-fs python3-gudhi python3-iniconfig python3-joblib python3-kiwisolver
120s   python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy
120s   python3-packaging python3-pil python3-pil.imagetk python3-pluggy python3-pot
120s   python3-pytest python3-scipy python3-sklearn python3-sklearn-lib
120s   python3-sympy python3-threadpoolctl python3-tk python3-ufolib2 tk8.6-blt2.5
120s   unicode-data x11-common
120s Suggested packages:
120s   blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc
120s   python3-torch python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft
120s   ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
120s   python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
120s   python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
120s   python3-gmpy2 gcc gfortran python-numpy-doc python3-dev python-pil-doc
120s   python-scipy-doc python3-dap python-sklearn-doc texlive-fonts-extra
120s   python-sympy-doc tix python3-tk-dbg
120s Recommended packages:
120s   libhwloc-plugins javascript-common python3-simplejson python3-psutil
120s   python3-bs4 python3-cssselect python3-html5lib python3-olefile g++
120s   | c++-compiler isympy-common
120s The following NEW packages will be installed:
120s   autopkgtest-satdep blt fonts-lyx libblas3 libgfortran5 libgomp1
120s   libgraphite2-3 libharfbuzz0b libhwloc15 libimagequant0 libjs-jquery
120s   libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0
120s   libraqm0 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtk8.6
120s   libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1
120s   python-matplotlib-data python3-all python3-appdirs python3-brotli
120s   python3-contourpy python3-cycler python3-dateutil python3-decorator
120s   python3-eagerpy python3-fonttools python3-fs python3-gudhi python3-iniconfig
120s   python3-joblib python3-kiwisolver python3-lxml python3-lz4
120s   python3-matplotlib python3-mpmath python3-numpy python3-packaging
120s   python3-pil python3-pil.imagetk python3-pluggy python3-pot python3-pytest
120s   python3-scipy python3-sklearn python3-sklearn-lib python3-sympy
120s   python3-threadpoolctl python3-tk python3-ufolib2 tk8.6-blt2.5 unicode-data
120s   x11-common
120s 0 upgraded, 65 newly installed, 0 to remove and 0 not upgraded.
120s Need to get 60.7 MB/60.7 MB of archives.
120s After this operation, 269 MB of additional disk space will be used.
120s Get:1 /tmp/autopkgtest.tDR4ya/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B]
121s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB]
121s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
121s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
121s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
121s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
121s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB]
121s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB]
121s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B]
121s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-lyx all 2.4.0-1 [171 kB]
121s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB]
121s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB]
121s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB]
121s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2build1 [70.8 kB]
121s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB]
121s Get:16 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhwloc15 arm64 2.10.0-1build1 [159 kB]
121s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB]
122s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
122s Get:19 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
122s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB]
122s Get:21 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
122s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB]
122s Get:23 http://ftpmaster.internal/ubuntu oracular/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
122s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB]
122s Get:25 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtbbmalloc2 arm64 2021.11.0-2ubuntu2 [43.8 kB]
122s Get:26 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtbbbind-2-5 arm64 2021.11.0-2ubuntu2 [16.4 kB]
122s Get:27 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtbb12 arm64 2021.11.0-2ubuntu2 [79.9 kB]
122s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB]
122s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB]
122s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 libxslt1.1 arm64 1.1.39-0exp1build1 [166 kB]
122s Get:31 http://ftpmaster.internal/ubuntu oracular/universe arm64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB]
122s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-all arm64 3.12.3-0ubuntu1 [888 B]
122s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB]
122s Get:34 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB]
122s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB]
122s Get:36 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-contourpy arm64 1.0.7-3 [163 kB]
122s Get:37 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cycler all 0.12.1-1 [9716 B]
122s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB]
122s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
122s Get:40 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-eagerpy all 0.30.0-3 [19.0 kB]
122s Get:41 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.11.4-10 [15.0 MB]
123s Get:42 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
123s Get:43 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-mpmath all 1.3.0-1 [425 kB]
123s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sympy all 1.12-8 [3966 kB]
123s Get:45 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fs all 2.4.16-4 [91.3 kB]
123s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-lxml arm64 5.2.1-1 [1179 kB]
123s Get:47 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB]
123s Get:48 http://ftpmaster.internal/ubuntu oracular/universe arm64 unicode-data all 15.1.0-1 [8878 kB]
124s Get:49 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB]
124s Get:50 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-gudhi arm64 3.9.0+dfsg-1build3 [1507 kB]
124s Get:51 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
124s Get:52 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-joblib all 1.3.2-2 [208 kB]
124s Get:53 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-kiwisolver arm64 1.4.5-1 [48.9 kB]
124s Get:54 http://ftpmaster.internal/ubuntu oracular/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB]
124s Get:55 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-pil arm64 10.3.0-2 [446 kB]
124s Get:56 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-tk arm64 3.12.3-0ubuntu1 [102 kB]
124s Get:57 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pil.imagetk arm64 10.3.0-2 [9268 B]
124s Get:58 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.0-1 [41.1 kB]
124s Get:59 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-matplotlib arm64 3.6.3-2ubuntu1 [5963 kB]
124s Get:60 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
124s Get:61 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pot arm64 0.9.3+dfsg-2 [209 kB]
124s Get:62 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 python3-pytest all 8.2.2-1ubuntu1 [250 kB]
124s Get:63 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
124s Get:64 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-1 [3656 kB]
124s Get:65 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn all 1.4.2+dfsg-1 [2261 kB]
125s Fetched 60.7 MB in 4s (16.2 MB/s)
125s Selecting previously unselected package libtcl8.6:arm64.
125s (Reading database ... 
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(Reading database ... 78200 files and directories currently installed.)
125s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ...
125s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ...
125s Selecting previously unselected package libxrender1:arm64.
125s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
125s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
125s Selecting previously unselected package libxft2:arm64.
125s Preparing to unpack .../02-libxft2_2.3.6-1build1_arm64.deb ...
125s Unpacking libxft2:arm64 (2.3.6-1build1) ...
125s Selecting previously unselected package x11-common.
125s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ...
125s Unpacking x11-common (1:7.7+23ubuntu3) ...
125s Selecting previously unselected package libxss1:arm64.
125s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_arm64.deb ...
125s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
125s Selecting previously unselected package libtk8.6:arm64.
125s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_arm64.deb ...
125s Unpacking libtk8.6:arm64 (8.6.14-1build1) ...
125s Selecting previously unselected package tk8.6-blt2.5.
125s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ...
125s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
126s Selecting previously unselected package blt.
126s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_arm64.deb ...
126s Unpacking blt (2.5.3+dfsg-7build1) ...
126s Selecting previously unselected package fonts-lyx.
126s Preparing to unpack .../08-fonts-lyx_2.4.0-1_all.deb ...
126s Unpacking fonts-lyx (2.4.0-1) ...
126s Selecting previously unselected package libblas3:arm64.
126s Preparing to unpack .../09-libblas3_3.12.0-3build1_arm64.deb ...
126s Unpacking libblas3:arm64 (3.12.0-3build1) ...
126s Selecting previously unselected package libgfortran5:arm64.
126s Preparing to unpack .../10-libgfortran5_14.1.0-1ubuntu1_arm64.deb ...
126s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ...
126s Selecting previously unselected package libgomp1:arm64.
126s Preparing to unpack .../11-libgomp1_14.1.0-1ubuntu1_arm64.deb ...
126s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ...
126s Selecting previously unselected package libgraphite2-3:arm64.
126s Preparing to unpack .../12-libgraphite2-3_1.3.14-2build1_arm64.deb ...
126s Unpacking libgraphite2-3:arm64 (1.3.14-2build1) ...
126s Selecting previously unselected package libharfbuzz0b:arm64.
127s Preparing to unpack .../13-libharfbuzz0b_8.3.0-2build2_arm64.deb ...
127s Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ...
127s Selecting previously unselected package libhwloc15:arm64.
127s Preparing to unpack .../14-libhwloc15_2.10.0-1build1_arm64.deb ...
127s Unpacking libhwloc15:arm64 (2.10.0-1build1) ...
127s Selecting previously unselected package libimagequant0:arm64.
127s Preparing to unpack .../15-libimagequant0_2.18.0-1build1_arm64.deb ...
127s Unpacking libimagequant0:arm64 (2.18.0-1build1) ...
127s Selecting previously unselected package libjs-jquery.
127s Preparing to unpack .../16-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
127s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
127s Selecting previously unselected package libjs-jquery-ui.
127s Preparing to unpack .../17-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
127s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
128s Selecting previously unselected package liblapack3:arm64.
128s Preparing to unpack .../18-liblapack3_3.12.0-3build1_arm64.deb ...
128s Unpacking liblapack3:arm64 (3.12.0-3build1) ...
128s Selecting previously unselected package liblbfgsb0:arm64.
129s Preparing to unpack .../19-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
129s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
129s Selecting previously unselected package liblcms2-2:arm64.
129s Preparing to unpack .../20-liblcms2-2_2.14-2build1_arm64.deb ...
129s Unpacking liblcms2-2:arm64 (2.14-2build1) ...
129s Selecting previously unselected package libqhull-r8.0:arm64.
129s Preparing to unpack .../21-libqhull-r8.0_2020.2-6build1_arm64.deb ...
129s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ...
129s Selecting previously unselected package libraqm0:arm64.
129s Preparing to unpack .../22-libraqm0_0.10.1-1build1_arm64.deb ...
129s Unpacking libraqm0:arm64 (0.10.1-1build1) ...
129s Selecting previously unselected package libtbbmalloc2:arm64.
129s Preparing to unpack .../23-libtbbmalloc2_2021.11.0-2ubuntu2_arm64.deb ...
129s Unpacking libtbbmalloc2:arm64 (2021.11.0-2ubuntu2) ...
129s Selecting previously unselected package libtbbbind-2-5:arm64.
129s Preparing to unpack .../24-libtbbbind-2-5_2021.11.0-2ubuntu2_arm64.deb ...
129s Unpacking libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ...
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129s Unpacking libtbb12:arm64 (2021.11.0-2ubuntu2) ...
129s Selecting previously unselected package libwebpdemux2:arm64.
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129s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ...
129s Selecting previously unselected package libwebpmux3:arm64.
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129s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ...
129s Selecting previously unselected package libxslt1.1:arm64.
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129s Unpacking libxslt1.1:arm64 (1.1.39-0exp1build1) ...
129s Selecting previously unselected package python-matplotlib-data.
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129s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ...
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129s Unpacking python3-all (3.12.3-0ubuntu1) ...
129s Selecting previously unselected package python3-appdirs.
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129s Unpacking python3-appdirs (1.4.4-4) ...
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130s Preparing to unpack .../32-python3-brotli_1.1.0-2build2_arm64.deb ...
130s Unpacking python3-brotli (1.1.0-2build2) ...
130s Selecting previously unselected package python3-numpy.
130s Preparing to unpack .../33-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ...
130s Unpacking python3-numpy (1:1.26.4+ds-10) ...
130s Selecting previously unselected package python3-contourpy.
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130s Unpacking python3-contourpy (1.0.7-3) ...
130s Selecting previously unselected package python3-cycler.
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130s Unpacking python3-cycler (0.12.1-1) ...
130s Selecting previously unselected package python3-dateutil.
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130s Unpacking python3-dateutil (2.9.0-2) ...
130s Selecting previously unselected package python3-decorator.
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130s Unpacking python3-decorator (5.1.1-5) ...
130s Selecting previously unselected package python3-eagerpy.
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130s Unpacking python3-eagerpy (0.30.0-3) ...
130s Selecting previously unselected package python3-scipy.
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130s Unpacking python3-scipy (1.11.4-10) ...
131s Selecting previously unselected package python3-ufolib2.
131s Preparing to unpack .../40-python3-ufolib2_0.16.0+dfsg1-1_all.deb ...
131s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
131s Selecting previously unselected package python3-mpmath.
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131s Unpacking python3-mpmath (1.3.0-1) ...
131s Selecting previously unselected package python3-sympy.
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131s Unpacking python3-sympy (1.12-8) ...
131s Selecting previously unselected package python3-fs.
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131s Unpacking python3-fs (2.4.16-4) ...
131s Selecting previously unselected package python3-lxml:arm64.
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132s Unpacking python3-lxml:arm64 (5.2.1-1) ...
132s Selecting previously unselected package python3-lz4.
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132s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ...
132s Selecting previously unselected package unicode-data.
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132s Unpacking unicode-data (15.1.0-1) ...
133s Selecting previously unselected package python3-fonttools.
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133s Selecting previously unselected package python3-gudhi.
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134s Unpacking python3-iniconfig (1.1.1-2) ...
134s Selecting previously unselected package python3-joblib.
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135s Unpacking python3-joblib (1.3.2-2) ...
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142s Selecting previously unselected package autopkgtest-satdep.
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142s Unpacking autopkgtest-satdep (0) ...
142s Setting up libgraphite2-3:arm64 (1.3.14-2build1) ...
142s Setting up liblcms2-2:arm64 (2.14-2build1) ...
142s Setting up python3-iniconfig (1.1.1-2) ...
142s Setting up libtbbmalloc2:arm64 (2021.11.0-2ubuntu2) ...
142s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
142s Setting up python3-joblib (1.3.2-2) ...
143s Setting up python3-lz4 (4.0.2+dfsg-1build4) ...
143s Setting up fonts-lyx (2.4.0-1) ...
143s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ...
143s Setting up python3-threadpoolctl (3.1.0-1) ...
145s Setting up x11-common (1:7.7+23ubuntu3) ...
147s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ...
147s Setting up python3-all (3.12.3-0ubuntu1) ...
147s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ...
147s Setting up unicode-data (15.1.0-1) ...
147s Setting up python3-decorator (5.1.1-5) ...
148s Setting up libblas3:arm64 (3.12.0-3build1) ...
148s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
148s Setting up python3-packaging (24.0-1) ...
149s Setting up python3-brotli (1.1.0-2build2) ...
149s Setting up python3-cycler (0.12.1-1) ...
149s Setting up libimagequant0:arm64 (2.18.0-1build1) ...
149s Setting up python3-kiwisolver (1.4.5-1) ...
149s Setting up libhwloc15:arm64 (2.10.0-1build1) ...
149s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ...
149s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ...
149s Setting up python3-pluggy (1.5.0-1) ...
149s Setting up libxslt1.1:arm64 (1.1.39-0exp1build1) ...
149s Setting up libopenjp2-7:arm64 (2.5.0-2build3) ...
149s Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ...
149s Setting up python3-dateutil (2.9.0-2) ...
150s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
150s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
150s Setting up python3-mpmath (1.3.0-1) ...
152s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ...
152s Setting up libwebpmux3:arm64 (1.4.0-0.1) ...
152s Setting up python3-appdirs (1.4.4-4) ...
154s Setting up python3-sympy (1.12-8) ...
160s Setting up liblapack3:arm64 (3.12.0-3build1) ...
160s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
160s Setting up libxft2:arm64 (2.3.6-1build1) ...
160s Setting up python3-pytest (8.2.2-1ubuntu1) ...
161s Setting up libtk8.6:arm64 (8.6.14-1build1) ...
161s Setting up libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ...
161s Setting up python3-fs (2.4.16-4) ...
161s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
161s Setting up libraqm0:arm64 (0.10.1-1build1) ...
161s Setting up python3-numpy (1:1.26.4+ds-10) ...
163s Setting up python3-lxml:arm64 (5.2.1-1) ...
163s Setting up python3-contourpy (1.0.7-3) ...
164s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
164s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
164s Setting up python3-scipy (1.11.4-10) ...
167s Setting up python3-pot (0.9.3+dfsg-2) ...
167s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:62: SyntaxWarning: invalid escape sequence '\o'
167s   """
167s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:189: SyntaxWarning: invalid escape sequence '\o'
167s   """
167s Setting up blt (2.5.3+dfsg-7build1) ...
167s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-1) ...
167s Setting up python3-tk:arm64 (3.12.3-0ubuntu1) ...
168s Setting up libtbb12:arm64 (2021.11.0-2ubuntu2) ...
168s Setting up python3-pil:arm64 (10.3.0-2) ...
168s Setting up python3-pil.imagetk:arm64 (10.3.0-2) ...
169s Setting up python3-eagerpy (0.30.0-3) ...
169s Setting up python3-sklearn (1.4.2+dfsg-1) ...
174s Setting up python3-gudhi (3.9.0+dfsg-1build3) ...
174s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
174s Setting up python3-fonttools (4.46.0-1build2) ...
175s Setting up python3-matplotlib (3.6.3-2ubuntu1) ...
177s Setting up autopkgtest-satdep (0) ...
177s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
178s Processing triggers for man-db (2.12.1-1) ...
188s (Reading database ... 86064 files and directories currently installed.)
188s Removing autopkgtest-satdep (0) ...
189s autopkgtest [09:35:11]: test python-upstream.sh: [-----------------------
190s Running tests with Python 3.12.
196s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py']
196s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py']
196s ============================= test session starts ==============================
196s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0
196s rootdir: /tmp/autopkgtest.tDR4ya/autopkgtest_tmp
196s collected 156 items / 31 deselected / 125 selected
196s 
197s test/test_alpha_complex.py .............                                 [ 10%]
197s test/test_betti_curve_representations.py ....                            [ 13%]
197s test/test_bottleneck_distance.py .                                       [ 14%]
197s test/test_collapse_edges.py ..                                           [ 16%]
197s test/test_cover_complex.py .......                                       [ 21%]
197s test/test_cubical_complex.py ..................                          [ 36%]
197s test/test_datasets_generators.py ..                                      [ 37%]
197s test/test_dtm_rips_complex.py ...                                        [ 40%]
197s test/test_euclidean_witness_complex.py ....                              [ 43%]
197s test/test_off.py .                                                       [ 44%]
197s test/test_persistence_graphical_tools.py ......                          [ 48%]
197s test/test_reader_utils.py ......                                         [ 53%]
197s test/test_representations_preprocessing.py .                             [ 54%]
197s test/test_rips_complex.py .......                                        [ 60%]
197s test/test_simplex_generators.py ...                                      [ 62%]
197s test/test_simplex_tree.py ....................                           [ 78%]
197s test/test_simplex_tree_serialization.py .                                [ 79%]
197s test/test_sklearn_cubical_persistence.py ...                             [ 81%]
197s test/test_subsampling.py .....                                           [ 85%]
197s test/test_tangential_complex.py .                                        [ 86%]
197s test/test_time_delay.py .                                                [ 87%]
197s test/test_tomato.py .                                                    [ 88%]
197s test/test_wasserstein_barycenter.py .                                    [ 88%]
197s test/test_wasserstein_distance.py .......                                [ 94%]
197s test/test_weighted_rips_complex.py ....                                  [ 97%]
197s test/test_witness_complex.py ...                                         [100%]
197s 
197s =============================== warnings summary ===============================
197s test/test_persistence_graphical_tools.py::test_limit_plot_persistence
197s   /usr/lib/python3/dist-packages/gudhi/persistence_graphical_tools.py:103: MatplotlibDeprecationWarning: The checkdep_usetex function was deprecated in Matplotlib 3.6 and will be removed two minor releases later. Use a vendored copy of this function instead.
197s     return checkdep_usetex(True)
197s 
197s test/test_wasserstein_barycenter.py::test_lagrangian_barycenter
197s   /usr/lib/python3/dist-packages/gudhi/wasserstein/barycenter.py:60: UserWarning: Computing barycenter of empty diag set. Returns None.
197s     warnings.warn("Computing barycenter of empty diag set. Returns None.")
197s 
197s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
197s ================ 125 passed, 31 deselected, 2 warnings in 7.53s ================
198s **********
200s autopkgtest [09:35:22]: test python-upstream.sh: -----------------------]
200s python-upstream.sh   PASS
200s autopkgtest [09:35:22]: test python-upstream.sh:  - - - - - - - - - - results - - - - - - - - - -
201s autopkgtest [09:35:23]: @@@@@@@@@@@@@@@@@@@@ summary
201s python-upstream.sh   PASS
212s nova [W] Skipping flock in bos03-arm64
212s Creating nova instance adt-oracular-arm64-gudhi-20240608-093202-juju-7f2275-prod-proposed-migration-environment-3-989fd130-63d6-465f-bd5a-3c139c0a5941 from image adt/ubuntu-oracular-arm64-server-20240608.img (UUID 22fa5d69-8269-442f-bb5d-fd1454f7b08f)...