0s autopkgtest [22:01:26]: starting date and time: 2024-07-09 22:01:26+0000 0s autopkgtest [22:01:26]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [22:01:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.w1ygwi0o/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gffread --apt-upgrade gffread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gffread/0.12.7-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-13.secgroup --name adt-oracular-arm64-gffread-20240709-213513-juju-7f2275-prod-proposed-migration-environment-2-593482d9-4141-4d25-a822-68ff586ae7a7 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [22:02:17]: testbed dpkg architecture: arm64 51s autopkgtest [22:02:17]: testbed apt version: 2.9.6 51s autopkgtest [22:02:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 51s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 52s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [357 kB] 52s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 52s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [52.9 kB] 52s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 52s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [104 kB] 52s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2504 B] 52s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 52s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 52s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [343 kB] 52s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [7704 B] 52s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [7596 B] 52s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B] 54s Fetched 1057 kB in 1s (1216 kB/s) 54s Reading package lists... 57s Reading package lists... 58s Building dependency tree... 58s Reading state information... 59s Calculating upgrade... 60s The following packages will be upgraded: 60s flash-kernel libaom3 libpcap0.8t64 60s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 1848 kB of archives. 60s After this operation, 66.6 kB of additional disk space will be used. 60s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcap0.8t64 arm64 1.10.4-5ubuntu1 [149 kB] 60s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 flash-kernel arm64 3.107ubuntu9 [49.2 kB] 60s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libaom3 arm64 3.9.1-1 [1651 kB] 61s Preconfiguring packages ... 61s Fetched 1848 kB in 1s (2409 kB/s) 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78372 files and directories currently installed.) 61s Preparing to unpack .../libpcap0.8t64_1.10.4-5ubuntu1_arm64.deb ... 61s Unpacking libpcap0.8t64:arm64 (1.10.4-5ubuntu1) over (1.10.4-4.1ubuntu3) ... 62s Preparing to unpack .../flash-kernel_3.107ubuntu9_arm64.deb ... 62s Unpacking flash-kernel (3.107ubuntu9) over (3.107ubuntu8) ... 62s Preparing to unpack .../libaom3_3.9.1-1_arm64.deb ... 62s Unpacking libaom3:arm64 (3.9.1-1) over (3.8.2-3) ... 62s Setting up libaom3:arm64 (3.9.1-1) ... 62s Setting up flash-kernel (3.107ubuntu9) ... 62s flash-kernel: deferring update (trigger activated) 62s Setting up libpcap0.8t64:arm64 (1.10.4-5ubuntu1) ... 62s Processing triggers for libc-bin (2.39-0ubuntu9) ... 62s Processing triggers for man-db (2.12.1-2) ... 63s Processing triggers for initramfs-tools (0.142ubuntu29) ... 63s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 63s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 82s System running in EFI mode, skipping. 82s Processing triggers for flash-kernel (3.107ubuntu9) ... 83s System running in EFI mode, skipping. 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 85s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 87s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade... 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s autopkgtest [22:02:55]: rebooting testbed after setup commands that affected boot 93s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 117s autopkgtest [22:03:23]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 120s autopkgtest [22:03:26]: @@@@@@@@@@@@@@@@@@@@ apt-source gffread 123s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-6 (dsc) [2434 B] 123s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-6 (tar) [404 kB] 123s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-6 (diff) [9024 B] 123s gpgv: Signature made Tue Jul 9 11:19:40 2024 UTC 123s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 123s gpgv: Can't check signature: No public key 123s dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-6.dsc: no acceptable signature found 123s autopkgtest [22:03:29]: testing package gffread version 0.12.7-6 123s autopkgtest [22:03:29]: build not needed 124s autopkgtest [22:03:30]: test run-tests: preparing testbed 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Starting pkgProblemResolver with broken count: 0 126s Starting 2 pkgProblemResolver with broken count: 0 126s Done 127s The following additional packages will be installed: 127s apache2 apache2-bin apache2-data apache2-utils augustus-doc bedtools-test 127s bioperl blt bowtie2 cnvkit cutadapt diamond-aligner emboss-data emboss-test 127s fontconfig fonts-font-awesome fonts-glyphicons-halflings fonts-lyx 127s fonts-mathjax fonts-urw-base35 gbrowse genometools-common gff2aplot gff2ps 127s gffread htslib-test javascript-common libalgorithm-diff-perl 127s libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl 127s libapache-dbi-perl libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3 127s libaprutil1-ldap libaprutil1t64 libasan8 libatomic1 libbio-coordinate-perl 127s libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl 127s libbio-graphics-perl libbio-perl-perl libblas3 libboost-dev libboost1.83-dev 127s libcairo2 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl 127s libclass-data-inheritable-perl libclone-perl libcommon-sense-perl 127s libdata-stag-perl libdatrie1 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl 127s libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl 127s libexception-class-perl libexporter-tiny-perl libfile-listing-perl 127s libfontenc1 libgcc-13-dev libgclib3t64 libgd-perl libgfortran5 libgomp1 127s libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl 127s libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl 127s libhttp-daemon-perl libhttp-date-perl libhttp-message-perl 127s libhttp-negotiate-perl libhwasan0 libice6 libimagequant0 libio-html-perl 127s libio-socket-ssl-perl libio-string-perl libitm1 libjs-bootstrap 127s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 127s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 127s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 127s libjs-prettify libjs-prototype libjs-scriptaculous libjs-sifter.js 127s libjs-twitter-bootstrap-datepicker libjson-perl liblapack3 liblbfgsb0 127s liblcms2-2 liblist-moreutils-perl liblist-moreutils-xs-perl liblsan0 127s liblua5.1-0 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl 127s libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libnet-http-perl 127s libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 127s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpq5 127s libqhull-r8.0 libraqm0 libsm6 libstatistics-descriptive-perl 127s libstdc++-13-dev libstring-approx-perl libsub-uplevel-perl libtcl8.6 127s libterm-readkey-perl libtest-deep-perl libtest-differences-perl 127s libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl 127s libthai-data libthai0 libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl 127s libtsan2 libubsan1 liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 127s libwww-perl libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 127s libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl 127s libxml-sax-perl libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 127s ncbi-blast+ ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css 127s optimir pandoc pandoc-data perl-openssl-defaults pigz proteinortho 127s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 127s python3-biopython python3-brotli python3-cairo python3-contourpy 127s python3-cutadapt python3-cycler python3-dateutil python3-decorator 127s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 127s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 127s python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy 127s python3-packaging python3-pandas python3-pandas-lib python3-pil 127s python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx 127s python3-pysam python3-reportlab python3-rlpycairo python3-scipy 127s python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy 127s python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2 127s python3-xopen python3-zipp r-base-core r-bioc-annotationdbi 127s r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache 127s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart 127s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 127s r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 127s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 127s r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 127s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 127s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 127s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 127s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 127s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 127s r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli 127s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 127s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 127s r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 127s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 127s r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 127s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 127s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc 127s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 127s r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg 127s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 127s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 127s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 127s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 127s r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar 127s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 127s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 127s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 127s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 127s r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny 127s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 127s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 127s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr 127s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools 127s seqan-apps sgml-base sqlite3 tk8.6-blt2.5 trinityrnaseq-examples 127s unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings 127s xfonts-utils xml-core zip zlib1g-dev 127s Suggested packages: 127s apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser 127s bedtools blt-demo bowtie2-examples valgrind fonts-freefont-otf 127s | fonts-freefont-ttf fonts-texgyre gbrowse-data gbrowse-calign 127s libfile-nfslock-perl postscript-viewer libev-perl libevent-perl 127s libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl 127s libboost-doc libboost1.83-doc libboost-atomic1.83-dev 127s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 127s libboost-contract1.83-dev libboost-coroutine1.83-dev 127s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 127s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 127s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 127s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 127s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 127s libboost-numpy1.83-dev libboost-program-options1.83-dev 127s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 127s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 127s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 127s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 127s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 127s libmldbm-perl libnet-daemon-perl libsql-statement-perl libdata-dump-perl 127s libio-compress-brotli-perl libjs-jquery-ui-docs fonts-mathjax-extras 127s fonts-stix libjs-mathjax-doc liblcms2-utils libcrypt-ssleay-perl 127s libstdc++-13-doc tcl8.6 tk8.6 tre-agrep libsub-name-perl 127s libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl nodejs 127s texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc 127s texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python 127s ruby libjs-katex citation-style-language-styles debhelper bwa clustalo 127s clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank 127s probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml 127s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 127s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 127s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 127s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 127s python-mpmath-doc python3-gmpy2 python3-gdal python3-pydot 127s python3-pygraphviz gcc gfortran python-numpy-doc python3-dev python3-pytest 127s python-pandas-doc python3-statsmodels python-pil-doc python-pomegranate-doc 127s python-pybedtools-doc pdf-viewer python3-egenix-mxtexttools 127s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 127s python-sklearn-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 127s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-go.db 127s r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle 127s r-cran-testthat r-bioc-all r-bioc-affy r-bioc-deseq2 r-bioc-annotate 127s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-shortread 127s r-cran-batchtools r-cran-mockery r-cran-webmockr r-cran-biocmanager 127s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 127s r-bioc-ggbio r-bioc-annotationhub r-cran-r.utils r-bioc-edger 127s r-cran-markdown r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 127s r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff r-cran-covr 127s r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 127s r-cran-rmysql r-cran-polyclip r-cran-lubridate r-cran-sp 127s r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt 127s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 127s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 127s r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild 127s r-cran-pkgload r-cran-plm r-cran-zoo cwltool cwltool | cwl-runner 127s sgml-base-doc sqlite3-doc 127s Recommended packages: 127s ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl 127s libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl med-config tcsh 127s | csh | c-shell graphicsmagick | imagemagick ghostscript gv 127s | postscript-viewer libalgorithm-diff-xs-perl libasync-interrupt-perl 127s libev-perl | libevent-perl libguard-perl libapache2-reload-perl 127s libbsd-resource-perl libbio-scf-perl libberkeleydb-perl libgd-svg-perl 127s bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl 127s libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl 127s libdbd-mysql-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl 127s libpostscript-perl libsoap-lite-perl libsort-naturally-perl 127s libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl 127s libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl 127s libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl 127s libfreezethaw-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl 127s libhtml-format-perl node-jquery libjson-xs-perl libdata-dump-perl 127s libhtml-form-perl libmailtools-perl libxml-sax-expat-perl 127s python-biopython-doc python3-pytest python3-psutil python3-bs4 127s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 127s python3-odf python3-openpyxl python3-tables python3-olefile 127s fonts-dejavu-extra g++ | c++-compiler isympy-common r-recommended r-base-dev 127s r-doc-html r-cran-testthat r-cran-future r-cran-thematic r-cran-fastmatch 127s r-cran-devtools r-cran-tinytest r-cran-callr r-cran-covr r-cran-mockery 127s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 127s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 127s r-cran-webutils r-cran-r.utils r-cran-xts r-cran-zoo r-cran-markdown 127s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg 127s r-cran-testit r-cran-pkgload r-cran-hexbin r-cran-mapproj r-cran-maps 127s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf 127s r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-readr 127s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 127s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr 127s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate 127s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit 127s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-dt r-cran-mockr 127s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-renv 127s trinityrnaseq libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 127s x11-utils x11-xserver-utils 127s The following NEW packages will be installed: 127s apache2 apache2-bin apache2-data apache2-utils augustus-doc 127s autopkgtest-satdep bedtools-test bioperl blt bowtie2 cnvkit cutadapt 127s diamond-aligner emboss-data emboss-test fontconfig fonts-font-awesome 127s fonts-glyphicons-halflings fonts-lyx fonts-mathjax fonts-urw-base35 gbrowse 127s genometools-common gff2aplot gff2ps gffread htslib-test javascript-common 127s libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl 127s libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapr1t64 127s libaprutil1-dbd-sqlite3 libaprutil1-ldap libaprutil1t64 libasan8 libatomic1 127s libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl 127s libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libblas3 127s libboost-dev libboost1.83-dev libcairo2 libcapture-tiny-perl libcgi-pm-perl 127s libcgi-session-perl libclass-data-inheritable-perl libclone-perl 127s libcommon-sense-perl libdata-stag-perl libdatrie1 libdbd-pg-perl 127s libdbd-sqlite3-perl libdbi-perl libdevel-stacktrace-perl 127s libdevel-symdump-perl libencode-locale-perl libexception-class-perl 127s libexporter-tiny-perl libfile-listing-perl libfontenc1 libgcc-13-dev 127s libgclib3t64 libgd-perl libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 127s libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 127s libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl 127s libhttp-message-perl libhttp-negotiate-perl libhwasan0 libice6 127s libimagequant0 libio-html-perl libio-socket-ssl-perl libio-string-perl 127s libitm1 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 127s libjs-highlight.js libjs-jquery libjs-jquery-datatables 127s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 127s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 127s libjs-prototype libjs-scriptaculous libjs-sifter.js 127s libjs-twitter-bootstrap-datepicker libjson-perl liblapack3 liblbfgsb0 127s liblcms2-2 liblist-moreutils-perl liblist-moreutils-xs-perl liblsan0 127s liblua5.1-0 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl 127s libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libnet-http-perl 127s libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 127s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpq5 127s libqhull-r8.0 libraqm0 libsm6 libstatistics-descriptive-perl 127s libstdc++-13-dev libstring-approx-perl libsub-uplevel-perl libtcl8.6 127s libterm-readkey-perl libtest-deep-perl libtest-differences-perl 127s libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl 127s libthai-data libthai0 libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl 127s libtsan2 libubsan1 liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 127s libwww-perl libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 127s libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl 127s libxml-sax-perl libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 127s ncbi-blast+ ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css 127s optimir pandoc pandoc-data perl-openssl-defaults pigz proteinortho 127s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 127s python3-biopython python3-brotli python3-cairo python3-contourpy 127s python3-cutadapt python3-cycler python3-dateutil python3-decorator 127s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 127s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 127s python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy 127s python3-packaging python3-pandas python3-pandas-lib python3-pil 127s python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx 127s python3-pysam python3-reportlab python3-rlpycairo python3-scipy 127s python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy 127s python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2 127s python3-xopen python3-zipp r-base-core r-bioc-annotationdbi 127s r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache 127s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart 127s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 127s r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 127s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 127s r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 127s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 127s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 127s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 127s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 127s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 127s r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli 127s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 127s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 127s r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 127s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 127s r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 127s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 127s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc 127s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 127s r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg 127s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 127s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 127s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 127s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 127s r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar 127s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 127s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 127s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 127s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 127s r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny 127s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 127s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 127s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr 127s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools 127s seqan-apps sgml-base sqlite3 tk8.6-blt2.5 trinityrnaseq-examples 127s unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings 127s xfonts-utils xml-core zip zlib1g-dev 127s 0 upgraded, 410 newly installed, 0 to remove and 0 not upgraded. 127s Need to get 860 MB/860 MB of archives. 127s After this operation, 2871 MB of additional disk space will be used. 127s Get:1 /tmp/autopkgtest.5mmNIJ/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [896 B] 127s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libapr1t64 arm64 1.7.2-3.2 [105 kB] 127s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libaprutil1t64 arm64 1.6.3-2ubuntu1 [94.1 kB] 127s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libaprutil1-dbd-sqlite3 arm64 1.6.3-2ubuntu1 [11.2 kB] 127s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libaprutil1-ldap arm64 1.6.3-2ubuntu1 [9044 B] 127s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 liblua5.4-0 arm64 5.4.6-3build2 [158 kB] 127s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 apache2-bin arm64 2.4.59-2ubuntu2 [1320 kB] 128s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 apache2-data all 2.4.59-2ubuntu2 [163 kB] 128s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 apache2-utils arm64 2.4.59-2ubuntu2 [96.4 kB] 128s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 apache2 arm64 2.4.59-2ubuntu2 [90.3 kB] 128s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 sgml-base all 1.31 [11.4 kB] 128s Get:12 http://ftpmaster.internal/ubuntu oracular/universe arm64 pigz arm64 2.8-1 [60.7 kB] 128s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 augustus-doc all 3.5.0+dfsg-4build5 [23.5 MB] 129s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 bedtools-test all 2.31.1+dfsg-2 [18.2 MB] 129s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 129s Get:16 http://ftpmaster.internal/ubuntu oracular/universe arm64 libdata-stag-perl all 0.14-3 [372 kB] 129s Get:17 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-perl-perl all 1.7.8-1 [2580 kB] 129s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libclass-data-inheritable-perl all 0.08-3 [8084 B] 129s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 129s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 libexception-class-perl all 1.45-1 [28.6 kB] 129s Get:21 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-deep-perl all 1.204-1 [47.1 kB] 129s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 libcapture-tiny-perl all 0.48-2 [20.2 kB] 129s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 libalgorithm-diff-perl all 1.201-1 [41.8 kB] 129s Get:24 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtext-diff-perl all 1.45-2 [25.6 kB] 129s Get:25 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-differences-perl all 0.71-1 [15.8 kB] 129s Get:26 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsub-uplevel-perl all 0.2800-3 [11.6 kB] 129s Get:27 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-exception-perl all 0.43-3 [13.4 kB] 129s Get:28 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-warn-perl all 0.37-2 [12.6 kB] 129s Get:29 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-most-perl all 0.38-1 [21.5 kB] 129s Get:30 http://ftpmaster.internal/ubuntu oracular/universe arm64 bioperl all 1.7.8-1 [216 kB] 129s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 129s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 129s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 129s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 129s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 129s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 129s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 129s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 129s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 129s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB] 129s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 130s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB] 130s Get:43 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-tk arm64 3.12.3-0ubuntu1 [102 kB] 130s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pil.imagetk arm64 10.3.0-2 [9268 B] 130s Get:45 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB] 130s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 130s Get:47 http://ftpmaster.internal/ubuntu oracular/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] 130s Get:48 http://ftpmaster.internal/ubuntu oracular/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB] 130s Get:49 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 130s Get:50 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB] 130s Get:51 http://ftpmaster.internal/ubuntu oracular/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 130s Get:52 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 130s Get:53 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 130s Get:54 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-pil arm64 10.3.0-2 [446 kB] 130s Get:55 http://ftpmaster.internal/ubuntu oracular/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 130s Get:56 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 130s Get:57 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 130s Get:58 http://ftpmaster.internal/ubuntu oracular/main arm64 libcairo2 arm64 1.18.0-3build1 [555 kB] 130s Get:59 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-cairo arm64 1.26.1-1 [121 kB] 130s Get:60 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-freetype all 2.4.0-2 [81.3 kB] 130s Get:61 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 130s Get:62 http://ftpmaster.internal/ubuntu oracular/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 130s Get:63 http://ftpmaster.internal/ubuntu oracular/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 130s Get:64 http://ftpmaster.internal/ubuntu oracular/main arm64 xfonts-utils arm64 1:7.7+6build3 [93.1 kB] 130s Get:65 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 130s Get:66 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-reportlab all 4.2.2-1 [1130 kB] 130s Get:67 http://ftpmaster.internal/ubuntu oracular/main arm64 xml-core all 0.19 [20.3 kB] 130s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 130s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-biopython arm64 1.83+dfsg1-3 [1646 kB] 130s Get:70 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 130s Get:71 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 130s Get:72 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-lyx all 2.4.1-1 [171 kB] 130s Get:73 http://ftpmaster.internal/ubuntu oracular/universe arm64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 130s Get:74 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 130s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-contourpy arm64 1.0.7-3 [163 kB] 130s Get:76 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 130s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] 130s Get:78 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 130s Get:79 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 130s Get:80 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.12.0-2 [15.9 MB] 131s Get:81 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 131s Get:82 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 131s Get:83 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sympy all 1.12-8 [3966 kB] 131s Get:84 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 131s Get:85 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 131s Get:86 http://ftpmaster.internal/ubuntu oracular/main arm64 libxslt1.1 arm64 1.1.39-0exp1build1 [166 kB] 131s Get:87 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-lxml arm64 5.2.1-1 [1179 kB] 131s Get:88 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] 131s Get:89 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build1 [362 kB] 131s Get:90 http://ftpmaster.internal/ubuntu oracular/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 131s Get:91 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] 131s Get:92 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-kiwisolver arm64 1.4.5-1 [48.9 kB] 131s Get:93 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.0-1 [41.1 kB] 131s Get:94 http://ftpmaster.internal/ubuntu oracular/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 131s Get:95 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-matplotlib arm64 3.6.3-2ubuntu1 [5963 kB] 132s Get:96 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [4178 kB] 132s Get:97 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 132s Get:98 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-joblib all 1.3.2-2 [208 kB] 132s Get:99 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 132s Get:100 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pomegranate arm64 0.14.8-6 [2432 kB] 132s Get:101 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-zipp all 3.19.2-2 [10.2 kB] 132s Get:102 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-importlib-metadata all 8.0.0-2 [19.4 kB] 132s Get:103 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pyfaidx all 0.8.1.1-2 [29.6 kB] 132s Get:104 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhtscodecs2 arm64 1.6.0-1build1 [78.0 kB] 133s Get:105 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhts3t64 arm64 1.20+ds-1 [431 kB] 133s Get:106 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pysam arm64 0.22.1+ds-2 [3412 kB] 133s Get:107 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 133s Get:108 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-3 [3651 kB] 133s Get:109 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 133s Get:110 http://ftpmaster.internal/ubuntu oracular/main arm64 zip arm64 3.0-13build1 [171 kB] 133s Get:111 http://ftpmaster.internal/ubuntu oracular/main arm64 unzip arm64 6.0-28ubuntu5 [176 kB] 133s Get:112 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB] 133s Get:113 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B] 133s Get:114 http://ftpmaster.internal/ubuntu oracular/main arm64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 133s Get:115 http://ftpmaster.internal/ubuntu oracular/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 133s Get:116 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 133s Get:117 http://ftpmaster.internal/ubuntu oracular/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 133s Get:118 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 133s Get:119 http://ftpmaster.internal/ubuntu oracular/main arm64 libpango-1.0-0 arm64 1.54.0+ds-1 [230 kB] 133s Get:120 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-1 [41.7 kB] 133s Get:121 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-1 [27.2 kB] 133s Get:122 http://ftpmaster.internal/ubuntu oracular/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 133s Get:123 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 133s Get:124 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 133s Get:125 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-base-core arm64 4.4.1-1 [28.3 MB] 134s Get:126 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 135s Get:127 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-dnacopy arm64 1.76.0-1 [379 kB] 135s Get:128 http://ftpmaster.internal/ubuntu oracular/universe arm64 cnvkit all 0.9.10-2 [20.5 MB] 135s Get:129 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-xopen all 1.7.0-2 [17.0 kB] 135s Get:130 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-dnaio arm64 1.2.0-2build1 [77.0 kB] 135s Get:131 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cutadapt arm64 4.7-2 [181 kB] 136s Get:132 http://ftpmaster.internal/ubuntu oracular/universe arm64 cutadapt all 4.7-2 [6766 B] 136s Get:133 http://ftpmaster.internal/ubuntu oracular/universe arm64 diamond-aligner arm64 2.1.9-1 [1905 kB] 136s Get:134 http://ftpmaster.internal/ubuntu oracular/universe arm64 emboss-data all 6.6.0+dfsg-12ubuntu2 [61.0 MB] 139s Get:135 http://ftpmaster.internal/ubuntu oracular/universe arm64 emboss-test all 6.6.0+dfsg-12ubuntu2 [4801 kB] 139s Get:136 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 139s Get:137 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 139s Get:138 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 139s Get:139 http://ftpmaster.internal/ubuntu oracular/main arm64 libgd-perl arm64 2.78-1build3 [125 kB] 139s Get:140 http://ftpmaster.internal/ubuntu oracular/main arm64 libdevel-symdump-perl all 2.18-5 [12.6 kB] 139s Get:141 http://ftpmaster.internal/ubuntu oracular/main arm64 liburi-perl all 5.28-1 [88.1 kB] 139s Get:142 http://ftpmaster.internal/ubuntu oracular/main arm64 libencode-locale-perl all 1.05-3 [11.6 kB] 139s Get:143 http://ftpmaster.internal/ubuntu oracular/main arm64 libtimedate-perl all 2.3300-2 [34.0 kB] 139s Get:144 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-date-perl all 6.06-1 [10.2 kB] 139s Get:145 http://ftpmaster.internal/ubuntu oracular/main arm64 libfile-listing-perl all 6.16-1 [11.3 kB] 139s Get:146 http://ftpmaster.internal/ubuntu oracular/main arm64 libhtml-tagset-perl all 3.24-1 [14.1 kB] 139s Get:147 http://ftpmaster.internal/ubuntu oracular/main arm64 libhtml-parser-perl arm64 3.82-1 [84.8 kB] 139s Get:148 http://ftpmaster.internal/ubuntu oracular/main arm64 libhtml-tree-perl all 5.07-3 [200 kB] 139s Get:149 http://ftpmaster.internal/ubuntu oracular/main arm64 libclone-perl arm64 0.46-1build3 [10.5 kB] 139s Get:150 http://ftpmaster.internal/ubuntu oracular/main arm64 libio-html-perl all 1.004-3 [15.9 kB] 139s Get:151 http://ftpmaster.internal/ubuntu oracular/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 139s Get:152 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-message-perl all 6.45-1ubuntu1 [78.2 kB] 139s Get:153 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-cookies-perl all 6.11-1 [18.2 kB] 139s Get:154 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-negotiate-perl all 6.01-2 [12.4 kB] 139s Get:155 http://ftpmaster.internal/ubuntu oracular/main arm64 perl-openssl-defaults arm64 7build3 [6628 B] 139s Get:156 http://ftpmaster.internal/ubuntu oracular/main arm64 libnet-ssleay-perl arm64 1.94-1build4 [311 kB] 139s Get:157 http://ftpmaster.internal/ubuntu oracular/main arm64 libio-socket-ssl-perl all 2.085-1 [195 kB] 139s Get:158 http://ftpmaster.internal/ubuntu oracular/main arm64 libnet-http-perl all 6.23-1 [22.3 kB] 139s Get:159 http://ftpmaster.internal/ubuntu oracular/main arm64 liblwp-protocol-https-perl all 6.14-1 [9040 B] 139s Get:160 http://ftpmaster.internal/ubuntu oracular/main arm64 libtry-tiny-perl all 0.31-2 [20.8 kB] 139s Get:161 http://ftpmaster.internal/ubuntu oracular/main arm64 libwww-robotrules-perl all 6.02-1 [12.6 kB] 139s Get:162 http://ftpmaster.internal/ubuntu oracular/main arm64 libwww-perl all 6.77-1 [138 kB] 139s Get:163 http://ftpmaster.internal/ubuntu oracular/main arm64 libapache2-mod-perl2 arm64 2.0.13-1build5 [777 kB] 139s Get:164 http://ftpmaster.internal/ubuntu oracular/main arm64 libdbi-perl arm64 1.643-4build3 [719 kB] 139s Get:165 http://ftpmaster.internal/ubuntu oracular/universe arm64 libapache-dbi-perl all 1.12-3 [40.5 kB] 139s Get:166 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-db-biofetch-perl all 1.7.3-4 [17.1 kB] 139s Get:167 http://ftpmaster.internal/ubuntu oracular/main arm64 libcgi-pm-perl all 4.66-1 [185 kB] 139s Get:168 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-db-gff-perl all 1.7.4-1 [273 kB] 139s Get:169 http://ftpmaster.internal/ubuntu oracular/main arm64 libpq5 arm64 16.3-1 [138 kB] 139s Get:170 http://ftpmaster.internal/ubuntu oracular/universe arm64 libdbd-pg-perl arm64 3.18.0-1build3 [191 kB] 139s Get:171 http://ftpmaster.internal/ubuntu oracular/universe arm64 libdbd-sqlite3-perl arm64 1.74-1build3 [159 kB] 139s Get:172 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-db-seqfeature-perl all 1.7.4-2 [169 kB] 139s Get:173 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-graphics-perl all 2.40-6 [601 kB] 139s Get:174 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-coordinate-perl all 1.7.1-4 [56.4 kB] 139s Get:175 http://ftpmaster.internal/ubuntu oracular/universe arm64 libcgi-session-perl all 4.48-4 [108 kB] 139s Get:176 http://ftpmaster.internal/ubuntu oracular/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 139s Get:177 http://ftpmaster.internal/ubuntu oracular/main arm64 libexporter-tiny-perl all 1.006002-1 [36.8 kB] 139s Get:178 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblist-moreutils-xs-perl arm64 0.430-4 [40.9 kB] 139s Get:179 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblist-moreutils-perl all 0.430-2 [38.2 kB] 139s Get:180 http://ftpmaster.internal/ubuntu oracular/universe arm64 libstatistics-descriptive-perl all 3.0801-1 [58.7 kB] 139s Get:181 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-daemon-perl all 6.16-1 [22.4 kB] 139s Get:182 http://ftpmaster.internal/ubuntu oracular/main arm64 libterm-readkey-perl arm64 2.38-2build4 [23.1 kB] 139s Get:183 http://ftpmaster.internal/ubuntu oracular/main arm64 sqlite3 arm64 3.46.0-1 [146 kB] 139s Get:184 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-prototype all 1.7.3-1 [44.8 kB] 139s Get:185 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-scriptaculous all 1.9.0-3 [92.6 kB] 139s Get:186 http://ftpmaster.internal/ubuntu oracular/universe arm64 libanyevent-perl arm64 7.170-2build6 [368 kB] 139s Get:187 http://ftpmaster.internal/ubuntu oracular/universe arm64 libanyevent-cachedns-perl all 0.08-3 [7216 B] 140s Get:188 http://ftpmaster.internal/ubuntu oracular/main arm64 libcommon-sense-perl arm64 3.75-3build3 [20.4 kB] 140s Get:189 http://ftpmaster.internal/ubuntu oracular/universe arm64 libanyevent-http-perl all 2.25-2 [30.3 kB] 140s Get:190 http://ftpmaster.internal/ubuntu oracular/universe arm64 libstring-approx-perl arm64 3.28-2build4 [34.5 kB] 140s Get:191 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-namespacesupport-perl all 1.12-2 [13.5 kB] 140s Get:192 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-sax-base-perl all 1.09-3 [18.9 kB] 140s Get:193 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] 140s Get:194 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-2 [296 kB] 140s Get:195 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-simple-perl all 2.25-2 [64.1 kB] 140s Get:196 http://ftpmaster.internal/ubuntu oracular/universe arm64 libvm-ec2-perl all 1.28-4 [766 kB] 140s Get:197 http://ftpmaster.internal/ubuntu oracular/universe arm64 gbrowse all 2.56+dfsg-12build3 [2181 kB] 140s Get:198 http://ftpmaster.internal/ubuntu oracular/universe arm64 gff2aplot arm64 2.0-15 [257 kB] 140s Get:199 http://ftpmaster.internal/ubuntu oracular/universe arm64 gff2ps all 0.98l-6 [63.1 kB] 140s Get:200 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgclib3t64 arm64 0.12.7+ds-5ubuntu3 [154 kB] 140s Get:201 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 gffread arm64 0.12.7-6 [63.3 kB] 140s Get:202 http://ftpmaster.internal/ubuntu oracular/universe arm64 htslib-test all 1.20+ds-1 [1145 kB] 140s Get:203 http://ftpmaster.internal/ubuntu oracular/main arm64 javascript-common all 11+nmu1 [5936 B] 140s Get:204 http://ftpmaster.internal/ubuntu oracular/main arm64 libasan8 arm64 14.1.0-1ubuntu1 [2922 kB] 140s Get:205 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14.1.0-1ubuntu1 [11.4 kB] 140s Get:206 http://ftpmaster.internal/ubuntu oracular/main arm64 libitm1 arm64 14.1.0-1ubuntu1 [27.9 kB] 140s Get:207 http://ftpmaster.internal/ubuntu oracular/main arm64 liblsan0 arm64 14.1.0-1ubuntu1 [1286 kB] 140s Get:208 http://ftpmaster.internal/ubuntu oracular/main arm64 libtsan2 arm64 14.1.0-1ubuntu1 [2692 kB] 141s Get:209 http://ftpmaster.internal/ubuntu oracular/main arm64 libubsan1 arm64 14.1.0-1ubuntu1 [1155 kB] 141s Get:210 http://ftpmaster.internal/ubuntu oracular/main arm64 libhwasan0 arm64 14.1.0-1ubuntu1 [1604 kB] 141s Get:211 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-13-dev arm64 13.2.0-23ubuntu4 [2470 kB] 141s Get:212 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++-13-dev arm64 13.2.0-23ubuntu4 [2379 kB] 141s Get:213 http://ftpmaster.internal/ubuntu oracular/main arm64 libboost1.83-dev arm64 1.83.0-3ubuntu1 [10.7 MB] 141s Get:214 http://ftpmaster.internal/ubuntu oracular/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 141s Get:215 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 141s Get:216 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 141s Get:217 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 141s Get:218 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 141s Get:219 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 141s Get:220 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 141s Get:221 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 141s Get:222 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 141s Get:223 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 141s Get:224 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 141s Get:225 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 141s Get:226 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 141s Get:227 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblua5.1-0 arm64 5.1.5-9build2 [115 kB] 141s Get:228 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmbedcrypto7t64 arm64 2.28.8-1 [209 kB] 141s Get:229 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmbedx509-1t64 arm64 2.28.8-1 [47.2 kB] 141s Get:230 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmbedtls14t64 arm64 2.28.8-1 [82.2 kB] 141s Get:231 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtre5 arm64 0.8.0-7 [47.3 kB] 141s Get:232 http://ftpmaster.internal/ubuntu oracular/universe arm64 ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB] 141s Get:233 http://ftpmaster.internal/ubuntu oracular/universe arm64 ncbi-blast+ arm64 2.12.0+ds-4build2 [12.1 MB] 142s Get:234 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 142s Get:235 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 142s Get:236 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 142s Get:237 http://ftpmaster.internal/ubuntu oracular/universe arm64 bowtie2 arm64 2.5.3-1 [1262 kB] 142s Get:238 http://ftpmaster.internal/ubuntu oracular/universe arm64 samtools arm64 1.20-3 [590 kB] 142s Get:239 http://ftpmaster.internal/ubuntu oracular/universe arm64 optimir all 1.2-1 [1128 kB] 142s Get:240 http://ftpmaster.internal/ubuntu oracular/universe arm64 pandoc-data all 3.1.3-2build2 [78.3 kB] 142s Get:241 http://ftpmaster.internal/ubuntu oracular/universe arm64 pandoc arm64 3.1.3+ds-3build1 [27.7 MB] 143s Get:242 http://ftpmaster.internal/ubuntu oracular/universe arm64 proteinortho arm64 6.3.1+dfsg-1 [340 kB] 143s Get:243 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-argcomplete all 3.4.0-1 [34.6 kB] 143s Get:244 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-argh all 0.31.2-1 [26.9 kB] 143s Get:245 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-simplejson arm64 3.19.2-1build2 [53.6 kB] 143s Get:246 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-gffutils all 0.13-1 [1081 kB] 143s Get:247 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pybedtools arm64 0.10.0-1 [12.3 MB] 143s Get:248 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 143s Get:249 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 143s Get:250 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 143s Get:251 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 143s Get:252 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 143s Get:253 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 143s Get:254 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rlang arm64 1.1.4-1 [1707 kB] 143s Get:255 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 143s Get:256 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 143s Get:257 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 143s Get:258 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 143s Get:259 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 143s Get:260 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 143s Get:261 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 143s Get:262 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 143s Get:263 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 143s Get:264 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 143s Get:265 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 143s Get:266 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rsqlite arm64 2.3.7-1 [1221 kB] 143s Get:267 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-curl arm64 5.2.1+dfsg-1 [179 kB] 143s Get:268 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 143s Get:269 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 143s Get:270 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 143s Get:271 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 143s Get:272 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2build2 [402 kB] 143s Get:273 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 144s Get:274 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 144s Get:275 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 144s Get:276 http://ftpmaster.internal/ubuntu oracular/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB] 144s Get:277 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 144s Get:278 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 144s Get:279 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 144s Get:280 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1build2 [793 kB] 144s Get:281 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 144s Get:282 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 144s Get:283 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 144s Get:284 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biostrings arm64 2.70.3+dfsg-1 [13.7 MB] 145s Get:285 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 145s Get:286 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 145s Get:287 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 145s Get:288 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 145s Get:289 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 145s Get:290 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 145s Get:291 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 145s Get:292 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 145s Get:293 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 145s Get:294 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 145s Get:295 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 145s Get:296 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 145s Get:297 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 145s Get:298 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 145s Get:299 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 145s Get:300 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 145s Get:301 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 145s Get:302 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 145s Get:303 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 145s Get:304 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 146s Get:305 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 146s Get:306 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 146s Get:307 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 146s Get:308 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 146s Get:309 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 146s Get:310 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 146s Get:311 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 146s Get:312 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 146s Get:313 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 146s Get:314 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 146s Get:315 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xml arm64 3.99-0.17-1 [1745 kB] 146s Get:316 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 146s Get:317 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 146s Get:318 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 146s Get:319 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-digest arm64 0.6.36-1 [197 kB] 146s Get:320 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 146s Get:321 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 146s Get:322 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 146s Get:323 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 146s Get:324 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 146s Get:325 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 146s Get:326 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 146s Get:327 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 146s Get:328 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 147s Get:329 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 147s Get:330 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-gtable all 0.3.5+dfsg-1 [192 kB] 147s Get:331 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 147s Get:332 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mass arm64 7.3-61-1 [1107 kB] 147s Get:333 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 147s Get:334 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-nlme arm64 3.1.165-1 [2307 kB] 147s Get:335 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-matrix arm64 1.7-0-3 [4109 kB] 147s Get:336 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 148s Get:337 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 148s Get:338 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cluster arm64 2.1.6-1build1 [551 kB] 148s Get:339 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-survival arm64 3.7-0-1 [6268 kB] 148s Get:340 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rpart arm64 4.1.23-1build1 [660 kB] 148s Get:341 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-nnet arm64 7.3-19-2build1 [111 kB] 148s Get:342 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-foreign arm64 0.8.87-1 [243 kB] 148s Get:343 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 148s Get:344 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-data.table arm64 1.15.4+dfsg-2.2 [1858 kB] 148s Get:345 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-evaluate all 0.24.0-1 [93.5 kB] 148s Get:346 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xfun arm64 0.45+dfsg-1 [517 kB] 148s Get:347 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 148s Get:348 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-yaml arm64 2.3.8-2 [108 kB] 148s Get:349 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 149s Get:350 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-knitr all 1.47+dfsg-1 [911 kB] 149s Get:351 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 149s Get:352 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 149s Get:353 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 149s Get:354 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 149s Get:355 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 149s Get:356 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fs arm64 1.6.4+dfsg-1 [244 kB] 149s Get:357 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 149s Get:358 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 149s Get:359 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 149s Get:360 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tinytex all 0.51-1 [145 kB] 149s Get:361 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 149s Get:362 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-littler arm64 0.3.20-1 [96.4 kB] 149s Get:363 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 149s Get:364 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 149s Get:365 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 149s Get:366 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-promises arm64 1.3.0+dfsg-1 [286 kB] 149s Get:367 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 149s Get:368 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 149s Get:369 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 149s Get:370 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 149s Get:371 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 149s Get:372 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB] 149s Get:373 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 149s Get:374 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 149s Get:375 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rstudioapi all 0.16.0-1 [287 kB] 149s Get:376 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 149s Get:377 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 150s Get:378 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 150s Get:379 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 150s Get:380 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 150s Get:381 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 150s Get:382 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.0-1build1 [1417 kB] 150s Get:383 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 150s Get:384 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 150s Get:385 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 150s Get:386 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-hmisc arm64 5.1-3-1 [3556 kB] 150s Get:387 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 150s Get:388 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-matrixstats arm64 1.3.0-1 [493 kB] 151s Get:389 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 151s Get:390 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 151s Get:391 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 151s Get:392 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 151s Get:393 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 151s Get:394 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 151s Get:395 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-3build2 [1358 kB] 151s Get:396 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1build2 [3636 kB] 151s Get:397 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 151s Get:398 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 151s Get:399 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 151s Get:400 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 151s Get:401 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 151s Get:402 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 152s Get:403 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-variantannotation arm64 1.48.1-1build2 [3531 kB] 152s Get:404 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 152s Get:405 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 152s Get:406 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 153s Get:407 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 153s Get:408 http://ftpmaster.internal/ubuntu oracular/universe arm64 trinityrnaseq-examples arm64 2.15.1+dfsg-5build1 [299 MB] 168s Get:409 http://ftpmaster.internal/ubuntu oracular/universe arm64 genometools-common all 1.6.5+ds-2.2 [194 kB] 168s Get:410 http://ftpmaster.internal/ubuntu oracular/universe arm64 seqan-apps arm64 2.4.0+dfsg-16 [11.8 MB] 170s Preconfiguring packages ... 170s Fetched 860 MB in 41s (20.9 MB/s) 170s Selecting previously unselected package libapr1t64:arm64. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78372 files and directories currently installed.) 171s Preparing to unpack .../000-libapr1t64_1.7.2-3.2_arm64.deb ... 171s Unpacking libapr1t64:arm64 (1.7.2-3.2) ... 171s Selecting previously unselected package libaprutil1t64:arm64. 171s Preparing to unpack .../001-libaprutil1t64_1.6.3-2ubuntu1_arm64.deb ... 171s Unpacking libaprutil1t64:arm64 (1.6.3-2ubuntu1) ... 171s Selecting previously unselected package libaprutil1-dbd-sqlite3:arm64. 171s Preparing to unpack .../002-libaprutil1-dbd-sqlite3_1.6.3-2ubuntu1_arm64.deb ... 171s Unpacking libaprutil1-dbd-sqlite3:arm64 (1.6.3-2ubuntu1) ... 171s Selecting previously unselected package libaprutil1-ldap:arm64. 171s Preparing to unpack .../003-libaprutil1-ldap_1.6.3-2ubuntu1_arm64.deb ... 171s Unpacking libaprutil1-ldap:arm64 (1.6.3-2ubuntu1) ... 171s Selecting previously unselected package liblua5.4-0:arm64. 171s Preparing to unpack .../004-liblua5.4-0_5.4.6-3build2_arm64.deb ... 171s Unpacking liblua5.4-0:arm64 (5.4.6-3build2) ... 171s Selecting previously unselected package apache2-bin. 171s Preparing to unpack .../005-apache2-bin_2.4.59-2ubuntu2_arm64.deb ... 171s Unpacking apache2-bin (2.4.59-2ubuntu2) ... 171s Selecting previously unselected package apache2-data. 171s Preparing to unpack .../006-apache2-data_2.4.59-2ubuntu2_all.deb ... 171s Unpacking apache2-data (2.4.59-2ubuntu2) ... 171s Selecting previously unselected package apache2-utils. 171s Preparing to unpack .../007-apache2-utils_2.4.59-2ubuntu2_arm64.deb ... 171s Unpacking apache2-utils (2.4.59-2ubuntu2) ... 171s Selecting previously unselected package apache2. 171s Preparing to unpack .../008-apache2_2.4.59-2ubuntu2_arm64.deb ... 171s Unpacking apache2 (2.4.59-2ubuntu2) ... 171s Selecting previously unselected package sgml-base. 171s Preparing to unpack .../009-sgml-base_1.31_all.deb ... 171s Unpacking sgml-base (1.31) ... 171s Selecting previously unselected package pigz. 171s Preparing to unpack .../010-pigz_2.8-1_arm64.deb ... 171s Unpacking pigz (2.8-1) ... 171s Selecting previously unselected package augustus-doc. 171s Preparing to unpack .../011-augustus-doc_3.5.0+dfsg-4build5_all.deb ... 171s Unpacking augustus-doc (3.5.0+dfsg-4build5) ... 172s Selecting previously unselected package bedtools-test. 172s Preparing to unpack .../012-bedtools-test_2.31.1+dfsg-2_all.deb ... 172s Unpacking bedtools-test (2.31.1+dfsg-2) ... 172s Selecting previously unselected package libio-string-perl. 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173s Unpacking libtest-differences-perl (0.71-1) ... 173s Selecting previously unselected package libsub-uplevel-perl. 173s Preparing to unpack .../024-libsub-uplevel-perl_0.2800-3_all.deb ... 173s Unpacking libsub-uplevel-perl (0.2800-3) ... 173s Selecting previously unselected package libtest-exception-perl. 173s Preparing to unpack .../025-libtest-exception-perl_0.43-3_all.deb ... 173s Unpacking libtest-exception-perl (0.43-3) ... 173s Selecting previously unselected package libtest-warn-perl. 173s Preparing to unpack .../026-libtest-warn-perl_0.37-2_all.deb ... 173s Unpacking libtest-warn-perl (0.37-2) ... 173s Selecting previously unselected package libtest-most-perl. 173s Preparing to unpack .../027-libtest-most-perl_0.38-1_all.deb ... 173s Unpacking libtest-most-perl (0.38-1) ... 173s Selecting previously unselected package bioperl. 173s Preparing to unpack .../028-bioperl_1.7.8-1_all.deb ... 173s Unpacking bioperl (1.7.8-1) ... 173s Selecting previously unselected package libtcl8.6:arm64. 173s Preparing to unpack .../029-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ... 173s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 173s Selecting previously unselected package libxrender1:arm64. 173s Preparing to unpack .../030-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 173s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 173s Selecting previously unselected package libxft2:arm64. 173s Preparing to unpack .../031-libxft2_2.3.6-1build1_arm64.deb ... 173s Unpacking libxft2:arm64 (2.3.6-1build1) ... 173s Selecting previously unselected package x11-common. 173s Preparing to unpack .../032-x11-common_1%3a7.7+23ubuntu3_all.deb ... 173s Unpacking x11-common (1:7.7+23ubuntu3) ... 173s Selecting previously unselected package libxss1:arm64. 173s Preparing to unpack .../033-libxss1_1%3a1.2.3-1build3_arm64.deb ... 173s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 173s Selecting previously unselected package libtk8.6:arm64. 173s Preparing to unpack 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(3.12.0-3build1) ... 174s Selecting previously unselected package python3-numpy. 174s Preparing to unpack .../040-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ... 174s Unpacking python3-numpy (1:1.26.4+ds-10) ... 174s Selecting previously unselected package python3-tk:arm64. 174s Preparing to unpack .../041-python3-tk_3.12.3-0ubuntu1_arm64.deb ... 174s Unpacking python3-tk:arm64 (3.12.3-0ubuntu1) ... 174s Selecting previously unselected package python3-pil.imagetk:arm64. 174s Preparing to unpack .../042-python3-pil.imagetk_10.3.0-2_arm64.deb ... 174s Unpacking python3-pil.imagetk:arm64 (10.3.0-2) ... 174s Selecting previously unselected package libgomp1:arm64. 174s Preparing to unpack .../043-libgomp1_14.1.0-1ubuntu1_arm64.deb ... 174s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ... 174s Selecting previously unselected package libimagequant0:arm64. 174s Preparing to unpack .../044-libimagequant0_2.18.0-1build1_arm64.deb ... 174s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 174s Selecting previously unselected package liblcms2-2:arm64. 175s Preparing to unpack .../045-liblcms2-2_2.14-2build1_arm64.deb ... 175s Unpacking liblcms2-2:arm64 (2.14-2build1) ... 175s Selecting previously unselected package libopenjp2-7:arm64. 175s Preparing to unpack .../046-libopenjp2-7_2.5.0-2build3_arm64.deb ... 175s Unpacking libopenjp2-7:arm64 (2.5.0-2build3) ... 175s Selecting previously unselected package libgraphite2-3:arm64. 175s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 175s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 175s Selecting previously unselected package libharfbuzz0b:arm64. 175s Preparing to unpack .../048-libharfbuzz0b_8.3.0-2build2_arm64.deb ... 175s Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ... 175s Selecting previously unselected package libraqm0:arm64. 175s Preparing to unpack .../049-libraqm0_0.10.1-1build1_arm64.deb ... 175s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 175s Selecting previously unselected package libwebpdemux2:arm64. 175s Preparing to unpack .../050-libwebpdemux2_1.4.0-0.1_arm64.deb ... 175s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 175s Selecting previously unselected package libwebpmux3:arm64. 175s Preparing to unpack .../051-libwebpmux3_1.4.0-0.1_arm64.deb ... 175s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 175s Selecting previously unselected package python3-pil:arm64. 175s Preparing to unpack .../052-python3-pil_10.3.0-2_arm64.deb ... 175s Unpacking python3-pil:arm64 (10.3.0-2) ... 175s Selecting previously unselected package libpixman-1-0:arm64. 175s Preparing to unpack .../053-libpixman-1-0_0.42.2-1build1_arm64.deb ... 175s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 175s Selecting previously unselected package libxcb-render0:arm64. 175s Preparing to unpack .../054-libxcb-render0_1.17.0-2_arm64.deb ... 175s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 175s Selecting previously unselected package libxcb-shm0:arm64. 175s Preparing to unpack .../055-libxcb-shm0_1.17.0-2_arm64.deb ... 175s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 175s Selecting previously unselected package libcairo2:arm64. 175s Preparing to unpack .../056-libcairo2_1.18.0-3build1_arm64.deb ... 175s Unpacking libcairo2:arm64 (1.18.0-3build1) ... 175s Selecting previously unselected package python3-cairo. 175s Preparing to unpack .../057-python3-cairo_1.26.1-1_arm64.deb ... 175s Unpacking python3-cairo (1.26.1-1) ... 175s Selecting previously unselected package python3-freetype. 175s Preparing to unpack .../058-python3-freetype_2.4.0-2_all.deb ... 175s Unpacking python3-freetype (2.4.0-2) ... 175s Selecting previously unselected package python3-rlpycairo. 175s Preparing to unpack .../059-python3-rlpycairo_0.3.0-3_all.deb ... 175s Unpacking python3-rlpycairo (0.3.0-3) ... 175s Selecting previously unselected package libfontenc1:arm64. 175s Preparing to unpack .../060-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 175s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 175s Selecting previously unselected package xfonts-encodings. 175s Preparing to unpack .../061-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 175s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 175s Selecting previously unselected package xfonts-utils. 175s Preparing to unpack .../062-xfonts-utils_1%3a7.7+6build3_arm64.deb ... 175s Unpacking xfonts-utils (1:7.7+6build3) ... 175s Selecting previously unselected package fonts-urw-base35. 175s Preparing to unpack .../063-fonts-urw-base35_20200910-8_all.deb ... 175s Unpacking fonts-urw-base35 (20200910-8) ... 175s Selecting previously unselected package python3-reportlab. 175s Preparing to unpack .../064-python3-reportlab_4.2.2-1_all.deb ... 175s Unpacking python3-reportlab (4.2.2-1) ... 176s Selecting previously unselected package xml-core. 176s Preparing to unpack .../065-xml-core_0.19_all.deb ... 176s Unpacking xml-core (0.19) ... 176s Selecting previously unselected package w3c-sgml-lib. 176s Preparing to unpack .../066-w3c-sgml-lib_1.3-3_all.deb ... 176s Unpacking w3c-sgml-lib (1.3-3) ... 176s Selecting previously unselected package python3-biopython. 176s Preparing to unpack .../067-python3-biopython_1.83+dfsg1-3_arm64.deb ... 176s Unpacking python3-biopython (1.83+dfsg1-3) ... 176s Selecting previously unselected package libjs-jquery. 176s Preparing to unpack .../068-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 176s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 176s Selecting previously unselected package libjs-jquery-ui. 176s Preparing to unpack .../069-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 176s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 176s Selecting previously unselected package fonts-lyx. 176s Preparing to unpack .../070-fonts-lyx_2.4.1-1_all.deb ... 176s Unpacking fonts-lyx (2.4.1-1) ... 176s Selecting previously unselected package python-matplotlib-data. 176s Preparing to unpack .../071-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 176s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 176s Selecting previously unselected package python3-dateutil. 176s Preparing to unpack .../072-python3-dateutil_2.9.0-2_all.deb ... 176s Unpacking python3-dateutil (2.9.0-2) ... 176s Selecting previously unselected package python3-contourpy. 176s Preparing to unpack .../073-python3-contourpy_1.0.7-3_arm64.deb ... 176s Unpacking python3-contourpy (1.0.7-3) ... 176s Selecting previously unselected package python3-cycler. 176s Preparing to unpack .../074-python3-cycler_0.12.1-1_all.deb ... 176s Unpacking python3-cycler (0.12.1-1) ... 176s Selecting previously unselected package python3-brotli. 176s Preparing to unpack .../075-python3-brotli_1.1.0-2build2_arm64.deb ... 176s Unpacking python3-brotli (1.1.0-2build2) ... 176s Selecting previously unselected package python3-decorator. 176s Preparing to unpack .../076-python3-decorator_5.1.1-5_all.deb ... 176s Unpacking python3-decorator (5.1.1-5) ... 176s Selecting previously unselected package liblbfgsb0:arm64. 176s Preparing to unpack .../077-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 176s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 176s Selecting previously unselected package python3-scipy. 176s Preparing to unpack .../078-python3-scipy_1.12.0-2_arm64.deb ... 176s Unpacking python3-scipy (1.12.0-2) ... 177s Selecting previously unselected package python3-ufolib2. 177s Preparing to unpack .../079-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 177s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 177s Selecting previously unselected package python3-mpmath. 177s Preparing to unpack .../080-python3-mpmath_1.3.0-1_all.deb ... 177s Unpacking python3-mpmath (1.3.0-1) ... 177s Selecting previously unselected package python3-sympy. 177s Preparing to unpack .../081-python3-sympy_1.12-8_all.deb ... 177s Unpacking python3-sympy (1.12-8) ... 177s Selecting previously unselected package python3-appdirs. 177s Preparing to unpack .../082-python3-appdirs_1.4.4-4_all.deb ... 177s Unpacking python3-appdirs (1.4.4-4) ... 177s Selecting previously unselected package python3-fs. 177s Preparing to unpack .../083-python3-fs_2.4.16-4_all.deb ... 177s Unpacking python3-fs (2.4.16-4) ... 177s Selecting previously unselected package libxslt1.1:arm64. 177s Preparing to unpack .../084-libxslt1.1_1.1.39-0exp1build1_arm64.deb ... 177s Unpacking libxslt1.1:arm64 (1.1.39-0exp1build1) ... 177s Selecting previously unselected package python3-lxml:arm64. 177s Preparing to unpack .../085-python3-lxml_5.2.1-1_arm64.deb ... 177s Unpacking python3-lxml:arm64 (5.2.1-1) ... 177s Selecting previously unselected package python3-lz4. 177s Preparing to unpack .../086-python3-lz4_4.0.2+dfsg-1build4_arm64.deb ... 177s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 177s Selecting previously unselected package python3-unicodedata2. 177s Preparing to unpack .../087-python3-unicodedata2_15.1.0+ds-1build1_arm64.deb ... 177s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 177s Selecting previously unselected package unicode-data. 177s Preparing to unpack .../088-unicode-data_15.1.0-1_all.deb ... 177s Unpacking unicode-data (15.1.0-1) ... 177s Selecting previously unselected package python3-fonttools. 178s Preparing to unpack .../089-python3-fonttools_4.46.0-1build2_arm64.deb ... 178s Unpacking python3-fonttools (4.46.0-1build2) ... 178s Selecting previously unselected package python3-kiwisolver. 178s Preparing to unpack .../090-python3-kiwisolver_1.4.5-1_arm64.deb ... 178s Unpacking python3-kiwisolver (1.4.5-1) ... 178s Selecting previously unselected package python3-packaging. 178s Preparing to unpack .../091-python3-packaging_24.0-1_all.deb ... 178s Unpacking python3-packaging (24.0-1) ... 178s Selecting previously unselected package libqhull-r8.0:arm64. 178s Preparing to unpack .../092-libqhull-r8.0_2020.2-6build1_arm64.deb ... 178s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 178s Selecting previously unselected package python3-matplotlib. 178s Preparing to unpack .../093-python3-matplotlib_3.6.3-2ubuntu1_arm64.deb ... 178s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 178s Selecting previously unselected package python3-pandas-lib:arm64. 178s Preparing to unpack .../094-python3-pandas-lib_2.1.4+dfsg-8_arm64.deb ... 178s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 178s Selecting previously unselected package python3-pandas. 178s Preparing to unpack .../095-python3-pandas_2.1.4+dfsg-8_all.deb ... 178s Unpacking python3-pandas (2.1.4+dfsg-8) ... 178s Selecting previously unselected package python3-joblib. 178s Preparing to unpack .../096-python3-joblib_1.3.2-2_all.deb ... 178s Unpacking python3-joblib (1.3.2-2) ... 178s Selecting previously unselected package python3-networkx. 178s Preparing to unpack .../097-python3-networkx_3.2.1-4ubuntu1_all.deb ... 178s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 179s Selecting previously unselected package python3-pomegranate. 179s Preparing to unpack .../098-python3-pomegranate_0.14.8-6_arm64.deb ... 179s Unpacking python3-pomegranate (0.14.8-6) ... 179s Selecting previously unselected package python3-zipp. 179s Preparing to unpack .../099-python3-zipp_3.19.2-2_all.deb ... 179s Unpacking python3-zipp (3.19.2-2) ... 179s Selecting previously unselected package python3-importlib-metadata. 179s Preparing to unpack .../100-python3-importlib-metadata_8.0.0-2_all.deb ... 179s Unpacking python3-importlib-metadata (8.0.0-2) ... 179s Selecting previously unselected package python3-pyfaidx. 179s Preparing to unpack .../101-python3-pyfaidx_0.8.1.1-2_all.deb ... 179s Unpacking python3-pyfaidx (0.8.1.1-2) ... 179s Selecting previously unselected package libhtscodecs2:arm64. 179s Preparing to unpack .../102-libhtscodecs2_1.6.0-1build1_arm64.deb ... 179s Unpacking libhtscodecs2:arm64 (1.6.0-1build1) ... 179s Selecting previously unselected package libhts3t64:arm64. 179s Preparing to unpack .../103-libhts3t64_1.20+ds-1_arm64.deb ... 179s Unpacking libhts3t64:arm64 (1.20+ds-1) ... 179s Selecting previously unselected package python3-pysam. 179s Preparing to unpack .../104-python3-pysam_0.22.1+ds-2_arm64.deb ... 179s Unpacking python3-pysam (0.22.1+ds-2) ... 179s Selecting previously unselected package python3-threadpoolctl. 179s Preparing to unpack .../105-python3-threadpoolctl_3.1.0-1_all.deb ... 179s Unpacking python3-threadpoolctl (3.1.0-1) ... 179s Selecting previously unselected package python3-sklearn-lib:arm64. 179s Preparing to unpack .../106-python3-sklearn-lib_1.4.2+dfsg-3_arm64.deb ... 179s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-3) ... 180s Selecting previously unselected package python3-sklearn. 180s Preparing to unpack .../107-python3-sklearn_1.4.2+dfsg-3_all.deb ... 180s Unpacking python3-sklearn (1.4.2+dfsg-3) ... 180s Selecting previously unselected package zip. 180s Preparing to unpack .../108-zip_3.0-13build1_arm64.deb ... 180s Unpacking zip (3.0-13build1) ... 180s Selecting previously unselected package unzip. 180s Preparing to unpack .../109-unzip_6.0-28ubuntu5_arm64.deb ... 180s Unpacking unzip (6.0-28ubuntu5) ... 180s Selecting previously unselected package libpaper1:arm64. 180s Preparing to unpack .../110-libpaper1_1.1.29build1_arm64.deb ... 180s Unpacking libpaper1:arm64 (1.1.29build1) ... 180s Selecting previously unselected package libpaper-utils. 180s Preparing to unpack .../111-libpaper-utils_1.1.29build1_arm64.deb ... 180s Unpacking libpaper-utils (1.1.29build1) ... 180s Selecting previously unselected package xdg-utils. 180s Preparing to unpack .../112-xdg-utils_1.2.1-0ubuntu1_all.deb ... 180s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 180s Selecting previously unselected package fontconfig. 180s Preparing to unpack .../113-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 180s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 180s Selecting previously unselected package libthai-data. 180s Preparing to unpack .../114-libthai-data_0.1.29-2build1_all.deb ... 180s Unpacking libthai-data (0.1.29-2build1) ... 180s Selecting previously unselected package libdatrie1:arm64. 180s Preparing to unpack .../115-libdatrie1_0.2.13-3build1_arm64.deb ... 180s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 180s Selecting previously unselected package libthai0:arm64. 180s Preparing to unpack .../116-libthai0_0.1.29-2build1_arm64.deb ... 180s Unpacking libthai0:arm64 (0.1.29-2build1) ... 180s Selecting previously unselected package libpango-1.0-0:arm64. 180s Preparing to unpack .../117-libpango-1.0-0_1.54.0+ds-1_arm64.deb ... 180s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-1) ... 180s Selecting previously unselected package libpangoft2-1.0-0:arm64. 180s Preparing to unpack .../118-libpangoft2-1.0-0_1.54.0+ds-1_arm64.deb ... 180s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ... 180s Selecting previously unselected package libpangocairo-1.0-0:arm64. 180s Preparing to unpack .../119-libpangocairo-1.0-0_1.54.0+ds-1_arm64.deb ... 180s Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ... 180s Selecting previously unselected package libice6:arm64. 180s Preparing to unpack .../120-libice6_2%3a1.0.10-1build3_arm64.deb ... 180s Unpacking libice6:arm64 (2:1.0.10-1build3) ... 180s Selecting previously unselected package libsm6:arm64. 180s Preparing to unpack .../121-libsm6_2%3a1.2.3-1build3_arm64.deb ... 180s Unpacking libsm6:arm64 (2:1.2.3-1build3) ... 180s Selecting previously unselected package libxt6t64:arm64. 180s Preparing to unpack .../122-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 180s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 180s Selecting previously unselected package r-base-core. 180s Preparing to unpack .../123-r-base-core_4.4.1-1_arm64.deb ... 180s Unpacking r-base-core (4.4.1-1) ... 181s Selecting previously unselected package r-bioc-biocgenerics. 181s Preparing to unpack .../124-r-bioc-biocgenerics_0.48.1-2_all.deb ... 181s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 181s Selecting previously unselected package r-bioc-dnacopy. 181s Preparing to unpack .../125-r-bioc-dnacopy_1.76.0-1_arm64.deb ... 181s Unpacking r-bioc-dnacopy (1.76.0-1) ... 181s Selecting previously unselected package cnvkit. 181s Preparing to unpack .../126-cnvkit_0.9.10-2_all.deb ... 181s Unpacking cnvkit (0.9.10-2) ... 181s Selecting previously unselected package python3-xopen. 181s Preparing to unpack .../127-python3-xopen_1.7.0-2_all.deb ... 181s Unpacking python3-xopen (1.7.0-2) ... 181s Selecting previously unselected package python3-dnaio. 181s Preparing to unpack .../128-python3-dnaio_1.2.0-2build1_arm64.deb ... 181s Unpacking python3-dnaio (1.2.0-2build1) ... 181s Selecting previously unselected package python3-cutadapt. 181s Preparing to unpack .../129-python3-cutadapt_4.7-2_arm64.deb ... 181s Unpacking python3-cutadapt (4.7-2) ... 181s Selecting previously unselected package cutadapt. 182s Preparing to unpack .../130-cutadapt_4.7-2_all.deb ... 182s Unpacking cutadapt (4.7-2) ... 182s Selecting previously unselected package diamond-aligner. 182s Preparing to unpack .../131-diamond-aligner_2.1.9-1_arm64.deb ... 182s Unpacking diamond-aligner (2.1.9-1) ... 182s Selecting previously unselected package emboss-data. 182s Preparing to unpack .../132-emboss-data_6.6.0+dfsg-12ubuntu2_all.deb ... 182s Unpacking emboss-data (6.6.0+dfsg-12ubuntu2) ... 185s Selecting previously unselected package emboss-test. 185s Preparing to unpack .../133-emboss-test_6.6.0+dfsg-12ubuntu2_all.deb ... 185s Unpacking emboss-test (6.6.0+dfsg-12ubuntu2) ... 185s Selecting previously unselected package fonts-font-awesome. 185s Preparing to unpack .../134-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 185s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 185s Selecting previously unselected package fonts-glyphicons-halflings. 185s Preparing to unpack .../135-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 185s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 185s Selecting previously unselected package fonts-mathjax. 185s Preparing to unpack .../136-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 185s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 186s Selecting previously unselected package libgd-perl. 186s Preparing to unpack .../137-libgd-perl_2.78-1build3_arm64.deb ... 186s Unpacking libgd-perl (2.78-1build3) ... 186s Selecting previously unselected package libdevel-symdump-perl. 186s Preparing to unpack .../138-libdevel-symdump-perl_2.18-5_all.deb ... 186s Unpacking libdevel-symdump-perl (2.18-5) ... 186s Selecting previously unselected package liburi-perl. 186s Preparing to unpack .../139-liburi-perl_5.28-1_all.deb ... 186s Unpacking liburi-perl (5.28-1) ... 186s Selecting previously unselected package libencode-locale-perl. 186s Preparing to unpack .../140-libencode-locale-perl_1.05-3_all.deb ... 186s Unpacking libencode-locale-perl (1.05-3) ... 186s Selecting previously unselected package libtimedate-perl. 186s Preparing to unpack .../141-libtimedate-perl_2.3300-2_all.deb ... 186s Unpacking libtimedate-perl (2.3300-2) ... 186s Selecting previously unselected package libhttp-date-perl. 186s Preparing to unpack .../142-libhttp-date-perl_6.06-1_all.deb ... 186s Unpacking libhttp-date-perl (6.06-1) ... 186s Selecting previously unselected package libfile-listing-perl. 186s Preparing to unpack .../143-libfile-listing-perl_6.16-1_all.deb ... 186s Unpacking libfile-listing-perl (6.16-1) ... 186s Selecting previously unselected package libhtml-tagset-perl. 186s Preparing to unpack .../144-libhtml-tagset-perl_3.24-1_all.deb ... 186s Unpacking libhtml-tagset-perl (3.24-1) ... 186s Selecting previously unselected package libhtml-parser-perl:arm64. 186s Preparing to unpack .../145-libhtml-parser-perl_3.82-1_arm64.deb ... 186s Unpacking libhtml-parser-perl:arm64 (3.82-1) ... 186s Selecting previously unselected package libhtml-tree-perl. 186s Preparing to unpack .../146-libhtml-tree-perl_5.07-3_all.deb ... 186s Unpacking libhtml-tree-perl (5.07-3) ... 186s Selecting previously unselected package libclone-perl:arm64. 186s Preparing to unpack .../147-libclone-perl_0.46-1build3_arm64.deb ... 186s Unpacking libclone-perl:arm64 (0.46-1build3) ... 186s Selecting previously unselected package libio-html-perl. 186s Preparing to unpack .../148-libio-html-perl_1.004-3_all.deb ... 186s Unpacking libio-html-perl (1.004-3) ... 186s Selecting previously unselected package liblwp-mediatypes-perl. 186s Preparing to unpack .../149-liblwp-mediatypes-perl_6.04-2_all.deb ... 186s Unpacking liblwp-mediatypes-perl (6.04-2) ... 186s Selecting previously unselected package libhttp-message-perl. 186s Preparing to unpack .../150-libhttp-message-perl_6.45-1ubuntu1_all.deb ... 186s Unpacking libhttp-message-perl (6.45-1ubuntu1) ... 186s Selecting previously unselected package libhttp-cookies-perl. 186s Preparing to unpack .../151-libhttp-cookies-perl_6.11-1_all.deb ... 186s Unpacking libhttp-cookies-perl (6.11-1) ... 186s Selecting previously unselected package libhttp-negotiate-perl. 186s Preparing to unpack .../152-libhttp-negotiate-perl_6.01-2_all.deb ... 186s Unpacking libhttp-negotiate-perl (6.01-2) ... 186s Selecting previously unselected package perl-openssl-defaults:arm64. 186s Preparing to unpack .../153-perl-openssl-defaults_7build3_arm64.deb ... 186s Unpacking perl-openssl-defaults:arm64 (7build3) ... 186s Selecting previously unselected package libnet-ssleay-perl:arm64. 186s Preparing to unpack .../154-libnet-ssleay-perl_1.94-1build4_arm64.deb ... 186s Unpacking libnet-ssleay-perl:arm64 (1.94-1build4) ... 186s Selecting previously unselected package libio-socket-ssl-perl. 186s Preparing to unpack .../155-libio-socket-ssl-perl_2.085-1_all.deb ... 186s Unpacking libio-socket-ssl-perl (2.085-1) ... 186s Selecting previously unselected package libnet-http-perl. 186s Preparing to unpack .../156-libnet-http-perl_6.23-1_all.deb ... 186s Unpacking libnet-http-perl (6.23-1) ... 186s Selecting previously unselected package liblwp-protocol-https-perl. 187s Preparing to unpack .../157-liblwp-protocol-https-perl_6.14-1_all.deb ... 187s Unpacking liblwp-protocol-https-perl (6.14-1) ... 187s Selecting previously unselected package libtry-tiny-perl. 187s Preparing to unpack .../158-libtry-tiny-perl_0.31-2_all.deb ... 187s Unpacking libtry-tiny-perl (0.31-2) ... 187s Selecting previously unselected package libwww-robotrules-perl. 187s Preparing to unpack .../159-libwww-robotrules-perl_6.02-1_all.deb ... 187s Unpacking libwww-robotrules-perl (6.02-1) ... 187s Selecting previously unselected package libwww-perl. 187s Preparing to unpack .../160-libwww-perl_6.77-1_all.deb ... 187s Unpacking libwww-perl (6.77-1) ... 187s Selecting previously unselected package libapache2-mod-perl2. 187s Preparing to unpack .../161-libapache2-mod-perl2_2.0.13-1build5_arm64.deb ... 187s Unpacking libapache2-mod-perl2 (2.0.13-1build5) ... 187s Selecting previously unselected package libdbi-perl:arm64. 187s Preparing to unpack .../162-libdbi-perl_1.643-4build3_arm64.deb ... 187s Unpacking libdbi-perl:arm64 (1.643-4build3) ... 187s Selecting previously unselected package libapache-dbi-perl. 187s Preparing to unpack .../163-libapache-dbi-perl_1.12-3_all.deb ... 187s Unpacking libapache-dbi-perl (1.12-3) ... 187s Selecting previously unselected package libbio-db-biofetch-perl. 187s Preparing to unpack .../164-libbio-db-biofetch-perl_1.7.3-4_all.deb ... 187s Unpacking libbio-db-biofetch-perl (1.7.3-4) ... 187s Selecting previously unselected package libcgi-pm-perl. 187s Preparing to unpack .../165-libcgi-pm-perl_4.66-1_all.deb ... 187s Unpacking libcgi-pm-perl (4.66-1) ... 187s Selecting previously unselected package libbio-db-gff-perl. 187s Preparing to unpack .../166-libbio-db-gff-perl_1.7.4-1_all.deb ... 187s Unpacking libbio-db-gff-perl (1.7.4-1) ... 187s Selecting previously unselected package libpq5:arm64. 187s Preparing to unpack .../167-libpq5_16.3-1_arm64.deb ... 187s Unpacking libpq5:arm64 (16.3-1) ... 187s Selecting previously unselected package libdbd-pg-perl. 187s Preparing to unpack .../168-libdbd-pg-perl_3.18.0-1build3_arm64.deb ... 187s Unpacking libdbd-pg-perl (3.18.0-1build3) ... 187s Selecting previously unselected package libdbd-sqlite3-perl:arm64. 187s Preparing to unpack .../169-libdbd-sqlite3-perl_1.74-1build3_arm64.deb ... 187s Unpacking libdbd-sqlite3-perl:arm64 (1.74-1build3) ... 187s Selecting previously unselected package libbio-db-seqfeature-perl. 187s Preparing to unpack .../170-libbio-db-seqfeature-perl_1.7.4-2_all.deb ... 187s Unpacking libbio-db-seqfeature-perl (1.7.4-2) ... 187s Selecting previously unselected package libbio-graphics-perl. 187s Preparing to unpack .../171-libbio-graphics-perl_2.40-6_all.deb ... 187s Unpacking libbio-graphics-perl (2.40-6) ... 187s Selecting previously unselected package libbio-coordinate-perl. 187s Preparing to unpack .../172-libbio-coordinate-perl_1.7.1-4_all.deb ... 187s Unpacking libbio-coordinate-perl (1.7.1-4) ... 187s Selecting previously unselected package libcgi-session-perl. 187s Preparing to unpack .../173-libcgi-session-perl_4.48-4_all.deb ... 187s Unpacking libcgi-session-perl (4.48-4) ... 187s Selecting previously unselected package libjson-perl. 187s Preparing to unpack .../174-libjson-perl_4.10000-1_all.deb ... 187s Unpacking libjson-perl (4.10000-1) ... 187s Selecting previously unselected package libexporter-tiny-perl. 188s Preparing to unpack .../175-libexporter-tiny-perl_1.006002-1_all.deb ... 188s Unpacking libexporter-tiny-perl (1.006002-1) ... 188s Selecting previously unselected package liblist-moreutils-xs-perl. 188s Preparing to unpack .../176-liblist-moreutils-xs-perl_0.430-4_arm64.deb ... 188s Unpacking liblist-moreutils-xs-perl (0.430-4) ... 188s Selecting previously unselected package liblist-moreutils-perl. 188s Preparing to unpack .../177-liblist-moreutils-perl_0.430-2_all.deb ... 188s Unpacking liblist-moreutils-perl (0.430-2) ... 188s Selecting previously unselected package libstatistics-descriptive-perl. 188s Preparing to unpack .../178-libstatistics-descriptive-perl_3.0801-1_all.deb ... 188s Unpacking libstatistics-descriptive-perl (3.0801-1) ... 188s Selecting previously unselected package libhttp-daemon-perl. 188s Preparing to unpack .../179-libhttp-daemon-perl_6.16-1_all.deb ... 188s Unpacking libhttp-daemon-perl (6.16-1) ... 188s Selecting previously unselected package libterm-readkey-perl. 188s Preparing to unpack .../180-libterm-readkey-perl_2.38-2build4_arm64.deb ... 188s Unpacking libterm-readkey-perl (2.38-2build4) ... 188s Selecting previously unselected package sqlite3. 188s Preparing to unpack .../181-sqlite3_3.46.0-1_arm64.deb ... 188s Unpacking sqlite3 (3.46.0-1) ... 188s Selecting previously unselected package libjs-prototype. 188s Preparing to unpack .../182-libjs-prototype_1.7.3-1_all.deb ... 188s Unpacking libjs-prototype (1.7.3-1) ... 188s Selecting previously unselected package libjs-scriptaculous. 188s Preparing to unpack .../183-libjs-scriptaculous_1.9.0-3_all.deb ... 188s Unpacking libjs-scriptaculous (1.9.0-3) ... 188s Selecting previously unselected package libanyevent-perl. 188s Preparing to unpack .../184-libanyevent-perl_7.170-2build6_arm64.deb ... 188s Unpacking libanyevent-perl (7.170-2build6) ... 188s Selecting previously unselected package libanyevent-cachedns-perl. 188s Preparing to unpack .../185-libanyevent-cachedns-perl_0.08-3_all.deb ... 188s Unpacking libanyevent-cachedns-perl (0.08-3) ... 188s Selecting previously unselected package libcommon-sense-perl:arm64. 188s Preparing to unpack .../186-libcommon-sense-perl_3.75-3build3_arm64.deb ... 188s Unpacking libcommon-sense-perl:arm64 (3.75-3build3) ... 188s Selecting previously unselected package libanyevent-http-perl. 188s Preparing to unpack .../187-libanyevent-http-perl_2.25-2_all.deb ... 188s Unpacking libanyevent-http-perl (2.25-2) ... 188s Selecting previously unselected package libstring-approx-perl. 188s Preparing to unpack .../188-libstring-approx-perl_3.28-2build4_arm64.deb ... 188s Unpacking libstring-approx-perl (3.28-2build4) ... 188s Selecting previously unselected package libxml-namespacesupport-perl. 188s Preparing to unpack .../189-libxml-namespacesupport-perl_1.12-2_all.deb ... 188s Unpacking libxml-namespacesupport-perl (1.12-2) ... 188s Selecting previously unselected package libxml-sax-base-perl. 188s Preparing to unpack .../190-libxml-sax-base-perl_1.09-3_all.deb ... 188s Unpacking libxml-sax-base-perl (1.09-3) ... 188s Selecting previously unselected package libxml-sax-perl. 188s Preparing to unpack .../191-libxml-sax-perl_1.02+dfsg-3_all.deb ... 188s Unpacking libxml-sax-perl (1.02+dfsg-3) ... 189s Selecting previously unselected package libxml-libxml-perl. 189s Preparing to unpack .../192-libxml-libxml-perl_2.0207+dfsg+really+2.0134-2_arm64.deb ... 189s Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ... 189s Selecting previously unselected package libxml-simple-perl. 189s Preparing to unpack .../193-libxml-simple-perl_2.25-2_all.deb ... 189s Unpacking libxml-simple-perl (2.25-2) ... 189s Selecting previously unselected package libvm-ec2-perl. 189s Preparing to unpack .../194-libvm-ec2-perl_1.28-4_all.deb ... 189s Unpacking libvm-ec2-perl (1.28-4) ... 189s Selecting previously unselected package gbrowse. 189s Preparing to unpack .../195-gbrowse_2.56+dfsg-12build3_all.deb ... 189s Unpacking gbrowse (2.56+dfsg-12build3) ... 189s Selecting previously unselected package gff2aplot. 189s Preparing to unpack .../196-gff2aplot_2.0-15_arm64.deb ... 189s Unpacking gff2aplot (2.0-15) ... 189s Selecting previously unselected package gff2ps. 189s Preparing to unpack .../197-gff2ps_0.98l-6_all.deb ... 189s Unpacking gff2ps (0.98l-6) ... 189s Selecting previously unselected package libgclib3t64:arm64. 189s Preparing to unpack .../198-libgclib3t64_0.12.7+ds-5ubuntu3_arm64.deb ... 189s Unpacking libgclib3t64:arm64 (0.12.7+ds-5ubuntu3) ... 189s Selecting previously unselected package gffread. 189s Preparing to unpack .../199-gffread_0.12.7-6_arm64.deb ... 189s Unpacking gffread (0.12.7-6) ... 189s Selecting previously unselected package htslib-test. 190s Preparing to unpack .../200-htslib-test_1.20+ds-1_all.deb ... 190s Unpacking htslib-test (1.20+ds-1) ... 190s Selecting previously unselected package javascript-common. 190s Preparing to unpack .../201-javascript-common_11+nmu1_all.deb ... 190s Unpacking javascript-common (11+nmu1) ... 190s Selecting previously unselected package libasan8:arm64. 190s Preparing to unpack .../202-libasan8_14.1.0-1ubuntu1_arm64.deb ... 190s Unpacking libasan8:arm64 (14.1.0-1ubuntu1) ... 190s Selecting previously unselected package libatomic1:arm64. 190s Preparing to unpack .../203-libatomic1_14.1.0-1ubuntu1_arm64.deb ... 190s Unpacking libatomic1:arm64 (14.1.0-1ubuntu1) ... 190s Selecting previously unselected package libitm1:arm64. 190s Preparing to unpack .../204-libitm1_14.1.0-1ubuntu1_arm64.deb ... 190s Unpacking libitm1:arm64 (14.1.0-1ubuntu1) ... 190s Selecting previously unselected package liblsan0:arm64. 190s Preparing to unpack .../205-liblsan0_14.1.0-1ubuntu1_arm64.deb ... 190s Unpacking liblsan0:arm64 (14.1.0-1ubuntu1) ... 190s Selecting previously unselected package libtsan2:arm64. 190s Preparing to unpack .../206-libtsan2_14.1.0-1ubuntu1_arm64.deb ... 190s Unpacking libtsan2:arm64 (14.1.0-1ubuntu1) ... 190s Selecting previously unselected package libubsan1:arm64. 190s Preparing to unpack .../207-libubsan1_14.1.0-1ubuntu1_arm64.deb ... 190s Unpacking libubsan1:arm64 (14.1.0-1ubuntu1) ... 190s Selecting previously unselected package libhwasan0:arm64. 190s Preparing to unpack .../208-libhwasan0_14.1.0-1ubuntu1_arm64.deb ... 190s Unpacking libhwasan0:arm64 (14.1.0-1ubuntu1) ... 190s Selecting previously unselected package libgcc-13-dev:arm64. 190s Preparing to unpack .../209-libgcc-13-dev_13.2.0-23ubuntu4_arm64.deb ... 190s Unpacking libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ... 190s Selecting previously unselected package libstdc++-13-dev:arm64. 190s Preparing to unpack .../210-libstdc++-13-dev_13.2.0-23ubuntu4_arm64.deb ... 190s Unpacking libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ... 191s Selecting previously unselected package libboost1.83-dev:arm64. 191s Preparing to unpack .../211-libboost1.83-dev_1.83.0-3ubuntu1_arm64.deb ... 191s Unpacking libboost1.83-dev:arm64 (1.83.0-3ubuntu1) ... 192s Selecting previously unselected package libboost-dev:arm64. 192s Preparing to unpack .../212-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 192s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 192s Selecting previously unselected package libjs-bootstrap. 192s Preparing to unpack .../213-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 192s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 192s Selecting previously unselected package libjs-popper.js. 193s Preparing to unpack .../214-libjs-popper.js_1.16.1+ds-6_all.deb ... 193s Unpacking libjs-popper.js (1.16.1+ds-6) ... 193s Selecting previously unselected package libjs-bootstrap4. 193s Preparing to unpack .../215-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 193s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 193s Selecting previously unselected package libjs-d3. 193s Preparing to unpack .../216-libjs-d3_3.5.17-4_all.deb ... 193s Unpacking libjs-d3 (3.5.17-4) ... 193s Selecting previously unselected package libjs-es5-shim. 193s Preparing to unpack .../217-libjs-es5-shim_4.6.7-2_all.deb ... 193s Unpacking libjs-es5-shim (4.6.7-2) ... 193s Selecting previously unselected package libjs-highlight.js. 193s Preparing to unpack .../218-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 193s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 193s Selecting previously unselected package libjs-jquery-datatables. 193s Preparing to unpack .../219-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 193s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 193s Selecting previously unselected package libjs-sifter.js. 193s Preparing to unpack .../220-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 193s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 193s Selecting previously unselected package libjs-microplugin.js. 193s Preparing to unpack .../221-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 193s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 193s Selecting previously unselected package libjs-jquery-selectize.js. 193s Preparing to unpack .../222-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 193s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 193s Selecting previously unselected package libjs-json. 193s Preparing to unpack .../223-libjs-json_0~20221030+~1.0.8-1_all.deb ... 193s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 193s Selecting previously unselected package libjs-prettify. 194s Preparing to unpack .../224-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 194s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 194s Selecting previously unselected package liblua5.1-0:arm64. 194s Preparing to unpack .../225-liblua5.1-0_5.1.5-9build2_arm64.deb ... 194s Unpacking liblua5.1-0:arm64 (5.1.5-9build2) ... 194s Selecting previously unselected package libmbedcrypto7t64:arm64. 194s Preparing to unpack .../226-libmbedcrypto7t64_2.28.8-1_arm64.deb ... 194s Unpacking libmbedcrypto7t64:arm64 (2.28.8-1) ... 194s Selecting previously unselected package libmbedx509-1t64:arm64. 194s Preparing to unpack .../227-libmbedx509-1t64_2.28.8-1_arm64.deb ... 194s Unpacking libmbedx509-1t64:arm64 (2.28.8-1) ... 194s Selecting previously unselected package libmbedtls14t64:arm64. 194s Preparing to unpack .../228-libmbedtls14t64_2.28.8-1_arm64.deb ... 194s Unpacking libmbedtls14t64:arm64 (2.28.8-1) ... 194s Selecting previously unselected package libtre5:arm64. 194s Preparing to unpack .../229-libtre5_0.8.0-7_arm64.deb ... 194s Unpacking libtre5:arm64 (0.8.0-7) ... 194s Selecting previously unselected package ncbi-data. 194s Preparing to unpack .../230-ncbi-data_6.1.20170106+dfsg2-2_all.deb ... 194s Unpacking ncbi-data (6.1.20170106+dfsg2-2) ... 194s Selecting previously unselected package ncbi-blast+. 194s Preparing to unpack .../231-ncbi-blast+_2.12.0+ds-4build2_arm64.deb ... 194s Unpacking ncbi-blast+ (2.12.0+ds-4build2) ... 194s Selecting previously unselected package node-bootstrap-sass. 195s Preparing to unpack .../232-node-bootstrap-sass_3.4.3-2_all.deb ... 195s Unpacking node-bootstrap-sass (3.4.3-2) ... 195s Selecting previously unselected package node-html5shiv. 195s Preparing to unpack .../233-node-html5shiv_3.7.3+dfsg-5_all.deb ... 195s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 195s Selecting previously unselected package node-normalize.css. 195s Preparing to unpack .../234-node-normalize.css_8.0.1-5_all.deb ... 195s Unpacking node-normalize.css (8.0.1-5) ... 195s Selecting previously unselected package bowtie2. 195s Preparing to unpack .../235-bowtie2_2.5.3-1_arm64.deb ... 195s Unpacking bowtie2 (2.5.3-1) ... 195s Selecting previously unselected package samtools. 195s Preparing to unpack .../236-samtools_1.20-3_arm64.deb ... 195s Unpacking samtools (1.20-3) ... 195s Selecting previously unselected package optimir. 195s Preparing to unpack .../237-optimir_1.2-1_all.deb ... 195s Unpacking optimir (1.2-1) ... 195s Selecting previously unselected package pandoc-data. 195s Preparing to unpack .../238-pandoc-data_3.1.3-2build2_all.deb ... 195s Unpacking pandoc-data (3.1.3-2build2) ... 195s Selecting previously unselected package pandoc. 195s Preparing to unpack .../239-pandoc_3.1.3+ds-3build1_arm64.deb ... 195s Unpacking pandoc (3.1.3+ds-3build1) ... 196s Selecting previously unselected package proteinortho. 196s Preparing to unpack .../240-proteinortho_6.3.1+dfsg-1_arm64.deb ... 196s Unpacking proteinortho (6.3.1+dfsg-1) ... 196s Selecting previously unselected package python3-argcomplete. 196s Preparing to unpack .../241-python3-argcomplete_3.4.0-1_all.deb ... 196s Unpacking python3-argcomplete (3.4.0-1) ... 196s Selecting previously unselected package python3-argh. 196s Preparing to unpack .../242-python3-argh_0.31.2-1_all.deb ... 196s Unpacking python3-argh (0.31.2-1) ... 196s Selecting previously unselected package python3-simplejson. 196s Preparing to unpack .../243-python3-simplejson_3.19.2-1build2_arm64.deb ... 196s Unpacking python3-simplejson (3.19.2-1build2) ... 196s Selecting previously unselected package python3-gffutils. 196s Preparing to unpack .../244-python3-gffutils_0.13-1_all.deb ... 196s Unpacking python3-gffutils (0.13-1) ... 196s Selecting previously unselected package python3-pybedtools. 196s Preparing to unpack .../245-python3-pybedtools_0.10.0-1_arm64.deb ... 196s Unpacking python3-pybedtools (0.10.0-1) ... 197s Selecting previously unselected package r-bioc-biobase. 197s Preparing to unpack .../246-r-bioc-biobase_2.62.0-1_arm64.deb ... 197s Unpacking r-bioc-biobase (2.62.0-1) ... 197s Selecting previously unselected package r-bioc-s4vectors. 197s Preparing to unpack .../247-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 197s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 197s Selecting previously unselected package r-bioc-iranges. 197s Preparing to unpack .../248-r-bioc-iranges_2.36.0-1_arm64.deb ... 197s Unpacking r-bioc-iranges (2.36.0-1) ... 197s Selecting previously unselected package r-cran-dbi. 197s Preparing to unpack .../249-r-cran-dbi_1.2.3-1_all.deb ... 197s Unpacking r-cran-dbi (1.2.3-1) ... 197s Selecting previously unselected package r-cran-bit. 197s Preparing to unpack .../250-r-cran-bit_4.0.5-1_arm64.deb ... 197s Unpacking r-cran-bit (4.0.5-1) ... 197s Selecting previously unselected package r-cran-bit64. 197s Preparing to unpack .../251-r-cran-bit64_4.0.5-1_arm64.deb ... 197s Unpacking r-cran-bit64 (4.0.5-1) ... 197s Selecting previously unselected package r-cran-rlang. 197s Preparing to unpack .../252-r-cran-rlang_1.1.4-1_arm64.deb ... 197s Unpacking r-cran-rlang (1.1.4-1) ... 197s Selecting previously unselected package r-cran-cli. 197s Preparing to unpack .../253-r-cran-cli_3.6.2-1_arm64.deb ... 197s Unpacking r-cran-cli (3.6.2-1) ... 197s Selecting previously unselected package r-cran-glue. 197s Preparing to unpack .../254-r-cran-glue_1.7.0-1_arm64.deb ... 197s Unpacking r-cran-glue (1.7.0-1) ... 197s Selecting previously unselected package r-cran-lifecycle. 197s Preparing to unpack .../255-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 197s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 197s Selecting previously unselected package r-cran-vctrs. 197s Preparing to unpack .../256-r-cran-vctrs_0.6.5-1_arm64.deb ... 197s Unpacking r-cran-vctrs (0.6.5-1) ... 197s Selecting previously unselected package r-cran-blob. 197s Preparing to unpack .../257-r-cran-blob_1.2.4-1_all.deb ... 197s Unpacking r-cran-blob (1.2.4-1) ... 197s Selecting previously unselected package r-cran-fastmap. 197s Preparing to unpack .../258-r-cran-fastmap_1.1.1-1_arm64.deb ... 197s Unpacking r-cran-fastmap (1.1.1-1) ... 197s Selecting previously unselected package r-cran-cachem. 198s Preparing to unpack .../259-r-cran-cachem_1.0.8-1_arm64.deb ... 198s Unpacking r-cran-cachem (1.0.8-1) ... 198s Selecting previously unselected package r-cran-memoise. 198s Preparing to unpack .../260-r-cran-memoise_2.0.1-1_all.deb ... 198s Unpacking r-cran-memoise (2.0.1-1) ... 198s Selecting previously unselected package r-cran-pkgconfig. 198s Preparing to unpack .../261-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 198s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 198s Selecting previously unselected package r-cran-plogr. 198s Preparing to unpack .../262-r-cran-plogr_0.2.0-3build1_all.deb ... 198s Unpacking r-cran-plogr (0.2.0-3build1) ... 198s Selecting previously unselected package r-cran-cpp11. 198s Preparing to unpack .../263-r-cran-cpp11_0.4.7-1_all.deb ... 198s Unpacking r-cran-cpp11 (0.4.7-1) ... 198s Selecting previously unselected package r-cran-rsqlite. 198s Preparing to unpack .../264-r-cran-rsqlite_2.3.7-1_arm64.deb ... 198s Unpacking r-cran-rsqlite (2.3.7-1) ... 198s Selecting previously unselected package r-cran-curl. 199s Preparing to unpack .../265-r-cran-curl_5.2.1+dfsg-1_arm64.deb ... 199s Unpacking r-cran-curl (5.2.1+dfsg-1) ... 199s Selecting previously unselected package r-cran-jsonlite. 199s Preparing to unpack .../266-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 199s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 199s Selecting previously unselected package r-cran-mime. 199s Preparing to unpack .../267-r-cran-mime_0.12-2_arm64.deb ... 199s Unpacking r-cran-mime (0.12-2) ... 199s Selecting previously unselected package r-cran-sys. 199s Preparing to unpack .../268-r-cran-sys_3.4.2-1_arm64.deb ... 199s Unpacking r-cran-sys (3.4.2-1) ... 199s Selecting previously unselected package r-cran-askpass. 199s Preparing to unpack .../269-r-cran-askpass_1.2.0-1_arm64.deb ... 199s Unpacking r-cran-askpass (1.2.0-1) ... 199s Selecting previously unselected package r-cran-openssl. 199s Preparing to unpack .../270-r-cran-openssl_2.1.1+dfsg-2build2_arm64.deb ... 199s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ... 199s Selecting previously unselected package r-cran-r6. 199s Preparing to unpack .../271-r-cran-r6_2.5.1-1_all.deb ... 199s Unpacking r-cran-r6 (2.5.1-1) ... 199s Selecting previously unselected package r-cran-httr. 199s Preparing to unpack .../272-r-cran-httr_1.4.7+dfsg-1_all.deb ... 199s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 199s Selecting previously unselected package r-cran-png. 199s Preparing to unpack .../273-r-cran-png_0.1-8-1build2_arm64.deb ... 199s Unpacking r-cran-png (0.1-8-1build2) ... 199s Selecting previously unselected package zlib1g-dev:arm64. 199s Preparing to unpack .../274-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ... 199s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 199s Selecting previously unselected package r-bioc-zlibbioc. 199s Preparing to unpack .../275-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 199s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 199s Selecting previously unselected package r-bioc-xvector. 199s Preparing to unpack .../276-r-bioc-xvector_0.42.0-1_arm64.deb ... 199s Unpacking r-bioc-xvector (0.42.0-1) ... 199s Selecting previously unselected package r-cran-bitops. 200s Preparing to unpack .../277-r-cran-bitops_1.0-7-1_arm64.deb ... 200s Unpacking r-cran-bitops (1.0-7-1) ... 200s Selecting previously unselected package r-cran-rcurl. 200s Preparing to unpack .../278-r-cran-rcurl_1.98-1.14+dfsg-1build2_arm64.deb ... 200s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 200s Selecting previously unselected package r-bioc-genomeinfodbdata. 200s Preparing to unpack .../279-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 200s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 200s Selecting previously unselected package r-bioc-genomeinfodb. 200s Preparing to unpack .../280-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 200s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 200s Selecting previously unselected package r-cran-crayon. 200s Preparing to unpack .../281-r-cran-crayon_1.5.2-1_all.deb ... 200s Unpacking r-cran-crayon (1.5.2-1) ... 200s Selecting previously unselected package r-bioc-biostrings. 200s Preparing to unpack .../282-r-bioc-biostrings_2.70.3+dfsg-1_arm64.deb ... 200s Unpacking r-bioc-biostrings (2.70.3+dfsg-1) ... 200s Selecting previously unselected package r-bioc-keggrest. 200s Preparing to unpack .../283-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 200s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 200s Selecting previously unselected package r-bioc-annotationdbi. 200s Preparing to unpack .../284-r-bioc-annotationdbi_1.64.1-1_all.deb ... 200s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 200s Selecting previously unselected package r-bioc-genomicranges. 200s Preparing to unpack .../285-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 200s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 200s Selecting previously unselected package r-cran-lazyeval. 200s Preparing to unpack .../286-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 200s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 200s Selecting previously unselected package r-bioc-annotationfilter. 200s Preparing to unpack .../287-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 200s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 200s Selecting previously unselected package r-cran-generics. 200s Preparing to unpack .../288-r-cran-generics_0.1.3-1_all.deb ... 200s Unpacking r-cran-generics (0.1.3-1) ... 200s Selecting previously unselected package r-cran-magrittr. 200s Preparing to unpack .../289-r-cran-magrittr_2.0.3-1_arm64.deb ... 200s Unpacking r-cran-magrittr (2.0.3-1) ... 200s Selecting previously unselected package r-cran-fansi. 200s Preparing to unpack .../290-r-cran-fansi_1.0.5-1_arm64.deb ... 200s Unpacking r-cran-fansi (1.0.5-1) ... 201s Selecting previously unselected package r-cran-utf8. 201s Preparing to unpack .../291-r-cran-utf8_1.2.4-1_arm64.deb ... 201s Unpacking r-cran-utf8 (1.2.4-1) ... 201s Selecting previously unselected package r-cran-pillar. 201s Preparing to unpack .../292-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 201s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 201s Selecting previously unselected package r-cran-tibble. 201s Preparing to unpack .../293-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 201s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 201s Selecting previously unselected package r-cran-withr. 201s Preparing to unpack .../294-r-cran-withr_2.5.0-1_all.deb ... 201s Unpacking r-cran-withr (2.5.0-1) ... 201s Selecting previously unselected package r-cran-tidyselect. 201s Preparing to unpack .../295-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 201s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 201s Selecting previously unselected package r-cran-dplyr. 201s Preparing to unpack .../296-r-cran-dplyr_1.1.4-1_arm64.deb ... 201s Unpacking r-cran-dplyr (1.1.4-1) ... 201s Selecting previously unselected package r-cran-purrr. 201s Preparing to unpack .../297-r-cran-purrr_1.0.2-1_arm64.deb ... 201s Unpacking r-cran-purrr (1.0.2-1) ... 201s Selecting previously unselected package r-cran-stringi. 201s Preparing to unpack .../298-r-cran-stringi_1.8.3-1_arm64.deb ... 201s Unpacking r-cran-stringi (1.8.3-1) ... 201s Selecting previously unselected package r-cran-stringr. 201s Preparing to unpack .../299-r-cran-stringr_1.5.1-1_all.deb ... 201s Unpacking r-cran-stringr (1.5.1-1) ... 201s Selecting previously unselected package r-cran-tidyr. 201s Preparing to unpack .../300-r-cran-tidyr_1.3.1-1_arm64.deb ... 201s Unpacking r-cran-tidyr (1.3.1-1) ... 201s Selecting previously unselected package r-cran-dbplyr. 201s Preparing to unpack .../301-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 201s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 201s Selecting previously unselected package r-cran-filelock. 201s Preparing to unpack .../302-r-cran-filelock_1.0.3-1_arm64.deb ... 201s Unpacking r-cran-filelock (1.0.3-1) ... 201s Selecting previously unselected package r-bioc-biocfilecache. 201s Preparing to unpack .../303-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 201s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 201s Selecting previously unselected package r-bioc-biocio. 202s Preparing to unpack .../304-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 202s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 202s Selecting previously unselected package r-cran-formatr. 202s Preparing to unpack .../305-r-cran-formatr_1.14-2_all.deb ... 202s Unpacking r-cran-formatr (1.14-2) ... 202s Selecting previously unselected package r-cran-lambda.r. 202s Preparing to unpack .../306-r-cran-lambda.r_1.2.4-2build1_all.deb ... 202s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 202s Selecting previously unselected package r-cran-futile.options. 202s Preparing to unpack .../307-r-cran-futile.options_1.0.1-3build1_all.deb ... 202s Unpacking r-cran-futile.options (1.0.1-3build1) ... 202s Selecting previously unselected package r-cran-futile.logger. 202s Preparing to unpack .../308-r-cran-futile.logger_1.4.3-4build1_all.deb ... 202s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 202s Selecting previously unselected package r-cran-snow. 202s Preparing to unpack .../309-r-cran-snow_1%3a0.4.4-2_all.deb ... 202s Unpacking r-cran-snow (1:0.4.4-2) ... 202s Selecting previously unselected package r-cran-codetools. 202s Preparing to unpack .../310-r-cran-codetools_0.2-20-1_all.deb ... 202s Unpacking r-cran-codetools (0.2-20-1) ... 202s Selecting previously unselected package r-cran-bh. 202s Preparing to unpack .../311-r-cran-bh_1.84.0-1_all.deb ... 202s Unpacking r-cran-bh (1.84.0-1) ... 202s Selecting previously unselected package r-bioc-biocparallel. 203s Preparing to unpack .../312-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 203s Unpacking r-bioc-biocparallel (1.36.0-1) ... 203s Selecting previously unselected package r-cran-xml. 203s Preparing to unpack .../313-r-cran-xml_3.99-0.17-1_arm64.deb ... 203s Unpacking r-cran-xml (3.99-0.17-1) ... 203s Selecting previously unselected package r-cran-hms. 203s Preparing to unpack .../314-r-cran-hms_1.1.3-1_all.deb ... 203s Unpacking r-cran-hms (1.1.3-1) ... 203s Selecting previously unselected package r-cran-prettyunits. 203s Preparing to unpack .../315-r-cran-prettyunits_1.2.0-1_all.deb ... 203s Unpacking r-cran-prettyunits (1.2.0-1) ... 203s Selecting previously unselected package r-cran-progress. 203s Preparing to unpack .../316-r-cran-progress_1.2.3-1_all.deb ... 203s Unpacking r-cran-progress (1.2.3-1) ... 203s Selecting previously unselected package r-cran-digest. 203s Preparing to unpack .../317-r-cran-digest_0.6.36-1_arm64.deb ... 203s Unpacking r-cran-digest (0.6.36-1) ... 203s Selecting previously unselected package r-cran-rappdirs. 203s Preparing to unpack .../318-r-cran-rappdirs_0.3.3-1_arm64.deb ... 203s Unpacking r-cran-rappdirs (0.3.3-1) ... 203s Selecting previously unselected package r-cran-xml2. 203s Preparing to unpack .../319-r-cran-xml2_1.3.6-1_arm64.deb ... 203s Unpacking r-cran-xml2 (1.3.6-1) ... 203s Selecting previously unselected package r-bioc-biomart. 203s Preparing to unpack .../320-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 203s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 203s Selecting previously unselected package r-cran-farver. 203s Preparing to unpack .../321-r-cran-farver_2.1.2-1_arm64.deb ... 203s Unpacking r-cran-farver (2.1.2-1) ... 203s Selecting previously unselected package r-cran-labeling. 203s Preparing to unpack .../322-r-cran-labeling_0.4.3-1_all.deb ... 203s Unpacking r-cran-labeling (0.4.3-1) ... 203s Selecting previously unselected package r-cran-colorspace. 203s Preparing to unpack .../323-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 203s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 204s Selecting previously unselected package r-cran-munsell. 204s Preparing to unpack .../324-r-cran-munsell_0.5.1-1_all.deb ... 204s Unpacking r-cran-munsell (0.5.1-1) ... 204s Selecting previously unselected package r-cran-rcolorbrewer. 204s Preparing to unpack .../325-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 204s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 204s Selecting previously unselected package r-cran-viridislite. 204s Preparing to unpack .../326-r-cran-viridislite_0.4.2-2_all.deb ... 204s Unpacking r-cran-viridislite (0.4.2-2) ... 204s Selecting previously unselected package r-cran-scales. 204s Preparing to unpack .../327-r-cran-scales_1.3.0-1_all.deb ... 204s Unpacking r-cran-scales (1.3.0-1) ... 204s Selecting previously unselected package r-cran-gtable. 204s Preparing to unpack .../328-r-cran-gtable_0.3.5+dfsg-1_all.deb ... 204s Unpacking r-cran-gtable (0.3.5+dfsg-1) ... 204s Selecting previously unselected package r-cran-isoband. 204s Preparing to unpack .../329-r-cran-isoband_0.2.7-1_arm64.deb ... 204s Unpacking r-cran-isoband (0.2.7-1) ... 204s Selecting previously unselected package r-cran-mass. 204s Preparing to unpack .../330-r-cran-mass_7.3-61-1_arm64.deb ... 204s Unpacking r-cran-mass (7.3-61-1) ... 204s Selecting previously unselected package r-cran-lattice. 204s Preparing to unpack .../331-r-cran-lattice_0.22-6-1_arm64.deb ... 204s Unpacking r-cran-lattice (0.22-6-1) ... 204s Selecting previously unselected package r-cran-nlme. 204s Preparing to unpack .../332-r-cran-nlme_3.1.165-1_arm64.deb ... 204s Unpacking r-cran-nlme (3.1.165-1) ... 204s Selecting previously unselected package r-cran-matrix. 204s Preparing to unpack .../333-r-cran-matrix_1.7-0-3_arm64.deb ... 204s Unpacking r-cran-matrix (1.7-0-3) ... 205s Selecting previously unselected package r-cran-mgcv. 205s Preparing to unpack .../334-r-cran-mgcv_1.9-1-1_arm64.deb ... 205s Unpacking r-cran-mgcv (1.9-1-1) ... 205s Selecting previously unselected package r-cran-ggplot2. 205s Preparing to unpack .../335-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 205s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 205s Selecting previously unselected package r-cran-cluster. 205s Preparing to unpack .../336-r-cran-cluster_2.1.6-1build1_arm64.deb ... 205s Unpacking r-cran-cluster (2.1.6-1build1) ... 205s Selecting previously unselected package r-cran-survival. 205s Preparing to unpack .../337-r-cran-survival_3.7-0-1_arm64.deb ... 205s Unpacking r-cran-survival (3.7-0-1) ... 205s Selecting previously unselected package r-cran-rpart. 205s Preparing to unpack .../338-r-cran-rpart_4.1.23-1build1_arm64.deb ... 205s Unpacking r-cran-rpart (4.1.23-1build1) ... 205s Selecting previously unselected package r-cran-nnet. 205s Preparing to unpack .../339-r-cran-nnet_7.3-19-2build1_arm64.deb ... 205s Unpacking r-cran-nnet (7.3-19-2build1) ... 205s Selecting previously unselected package r-cran-foreign. 205s Preparing to unpack .../340-r-cran-foreign_0.8.87-1_arm64.deb ... 205s Unpacking r-cran-foreign (0.8.87-1) ... 205s Selecting previously unselected package r-cran-gridextra. 205s Preparing to unpack .../341-r-cran-gridextra_2.3-3build1_all.deb ... 205s Unpacking r-cran-gridextra (2.3-3build1) ... 205s Selecting previously unselected package r-cran-data.table. 205s Preparing to unpack .../342-r-cran-data.table_1.15.4+dfsg-2.2_arm64.deb ... 205s Unpacking r-cran-data.table (1.15.4+dfsg-2.2) ... 205s Selecting previously unselected package r-cran-evaluate. 205s Preparing to unpack .../343-r-cran-evaluate_0.24.0-1_all.deb ... 205s Unpacking r-cran-evaluate (0.24.0-1) ... 205s Selecting previously unselected package r-cran-xfun. 205s Preparing to unpack .../344-r-cran-xfun_0.45+dfsg-1_arm64.deb ... 205s Unpacking r-cran-xfun (0.45+dfsg-1) ... 205s Selecting previously unselected package r-cran-highr. 205s Preparing to unpack .../345-r-cran-highr_0.11+dfsg-1_all.deb ... 205s Unpacking r-cran-highr (0.11+dfsg-1) ... 205s Selecting previously unselected package r-cran-yaml. 205s Preparing to unpack .../346-r-cran-yaml_2.3.8-2_arm64.deb ... 205s Unpacking r-cran-yaml (2.3.8-2) ... 205s Selecting previously unselected package libjs-mathjax. 205s Preparing to unpack .../347-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 205s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 206s Selecting previously unselected package r-cran-knitr. 206s Preparing to unpack .../348-r-cran-knitr_1.47+dfsg-1_all.deb ... 206s Unpacking r-cran-knitr (1.47+dfsg-1) ... 206s Selecting previously unselected package r-cran-backports. 206s Preparing to unpack .../349-r-cran-backports_1.4.1-1_arm64.deb ... 206s Unpacking r-cran-backports (1.4.1-1) ... 206s Selecting previously unselected package r-cran-checkmate. 206s Preparing to unpack .../350-r-cran-checkmate_2.3.1-1_arm64.deb ... 206s Unpacking r-cran-checkmate (2.3.1-1) ... 206s Selecting previously unselected package r-cran-base64enc. 206s Preparing to unpack .../351-r-cran-base64enc_0.1-3-3_arm64.deb ... 206s Unpacking r-cran-base64enc (0.1-3-3) ... 206s Selecting previously unselected package r-cran-htmltools. 206s Preparing to unpack .../352-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 206s Unpacking r-cran-htmltools (0.5.8.1-1) ... 206s Selecting previously unselected package r-cran-jquerylib. 206s Preparing to unpack .../353-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 206s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 207s Selecting previously unselected package r-cran-fs. 207s Preparing to unpack .../354-r-cran-fs_1.6.4+dfsg-1_arm64.deb ... 207s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 207s Selecting previously unselected package r-cran-sass. 207s Preparing to unpack .../355-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 207s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 207s Selecting previously unselected package r-cran-bslib. 207s Preparing to unpack .../356-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 207s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 207s Selecting previously unselected package r-cran-fontawesome. 207s Preparing to unpack .../357-r-cran-fontawesome_0.5.2-1_all.deb ... 207s Unpacking r-cran-fontawesome (0.5.2-1) ... 207s Selecting previously unselected package r-cran-tinytex. 207s Preparing to unpack .../358-r-cran-tinytex_0.51-1_all.deb ... 207s Unpacking r-cran-tinytex (0.51-1) ... 207s Selecting previously unselected package libjs-modernizr. 207s Preparing to unpack .../359-libjs-modernizr_3.13.0-0.1_all.deb ... 207s Unpacking libjs-modernizr (3.13.0-0.1) ... 207s Selecting previously unselected package r-cran-littler. 207s Preparing to unpack .../360-r-cran-littler_0.3.20-1_arm64.deb ... 207s Unpacking r-cran-littler (0.3.20-1) ... 207s Selecting previously unselected package r-cran-pkgkitten. 207s Preparing to unpack .../361-r-cran-pkgkitten_0.2.3-1_all.deb ... 207s Unpacking r-cran-pkgkitten (0.2.3-1) ... 207s Selecting previously unselected package r-cran-rcpp. 207s Preparing to unpack .../362-r-cran-rcpp_1.0.12-1_arm64.deb ... 207s Unpacking r-cran-rcpp (1.0.12-1) ... 207s Selecting previously unselected package r-cran-later. 207s Preparing to unpack .../363-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 207s Unpacking r-cran-later (1.3.2+dfsg-1) ... 207s Selecting previously unselected package r-cran-promises. 207s Preparing to unpack .../364-r-cran-promises_1.3.0+dfsg-1_arm64.deb ... 207s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 207s Selecting previously unselected package r-cran-httpuv. 207s Preparing to unpack .../365-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 207s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 207s Selecting previously unselected package r-cran-xtable. 207s Preparing to unpack .../366-r-cran-xtable_1%3a1.8-4-2_all.deb ... 207s Unpacking r-cran-xtable (1:1.8-4-2) ... 208s Selecting previously unselected package r-cran-sourcetools. 208s Preparing to unpack .../367-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 208s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 208s Selecting previously unselected package r-cran-commonmark. 208s Preparing to unpack .../368-r-cran-commonmark_1.9.1-1_arm64.deb ... 208s Unpacking r-cran-commonmark (1.9.1-1) ... 208s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 208s Preparing to unpack .../369-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 208s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 208s Selecting previously unselected package r-cran-shiny. 208s Preparing to unpack .../370-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ... 208s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ... 208s Selecting previously unselected package r-cran-rmarkdown. 208s Preparing to unpack .../371-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 208s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 208s Selecting previously unselected package r-cran-htmlwidgets. 208s Preparing to unpack .../372-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 208s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 208s Selecting previously unselected package r-cran-rstudioapi. 208s Preparing to unpack .../373-r-cran-rstudioapi_0.16.0-1_all.deb ... 208s Unpacking r-cran-rstudioapi (0.16.0-1) ... 208s Selecting previously unselected package r-cran-htmltable. 208s Preparing to unpack .../374-r-cran-htmltable_2.4.2-1_all.deb ... 208s Unpacking r-cran-htmltable (2.4.2-1) ... 208s Selecting previously unselected package r-cran-viridis. 208s Preparing to unpack .../375-r-cran-viridis_0.6.5-1_all.deb ... 208s Unpacking r-cran-viridis (0.6.5-1) ... 208s Selecting previously unselected package r-cran-formula. 208s Preparing to unpack .../376-r-cran-formula_1.2-5-1_all.deb ... 208s Unpacking r-cran-formula (1.2-5-1) ... 208s Selecting previously unselected package r-cran-chron. 208s Preparing to unpack .../377-r-cran-chron_2.3-61-2_arm64.deb ... 208s Unpacking r-cran-chron (2.3-61-2) ... 208s Selecting previously unselected package r-cran-jpeg. 208s Preparing to unpack .../378-r-cran-jpeg_0.1-10-1_arm64.deb ... 208s Unpacking r-cran-jpeg (0.1-10-1) ... 208s Selecting previously unselected package r-cran-deldir. 208s Preparing to unpack .../379-r-cran-deldir_2.0-4-1build1_arm64.deb ... 208s Unpacking r-cran-deldir (2.0-4-1build1) ... 208s Selecting previously unselected package r-cran-rcppeigen. 209s Preparing to unpack .../380-r-cran-rcppeigen_0.3.4.0.0-1build1_arm64.deb ... 209s Unpacking r-cran-rcppeigen (0.3.4.0.0-1build1) ... 209s Selecting previously unselected package r-cran-interp. 209s Preparing to unpack .../381-r-cran-interp_1.1-6-1_arm64.deb ... 209s Unpacking r-cran-interp (1.1-6-1) ... 209s Selecting previously unselected package r-cran-latticeextra. 209s Preparing to unpack .../382-r-cran-latticeextra_0.6-30-1_all.deb ... 209s Unpacking r-cran-latticeextra (0.6-30-1) ... 209s Selecting previously unselected package r-cran-acepack. 209s Preparing to unpack .../383-r-cran-acepack_1.4.2-1_arm64.deb ... 209s Unpacking r-cran-acepack (1.4.2-1) ... 209s Selecting previously unselected package r-cran-hmisc. 209s Preparing to unpack .../384-r-cran-hmisc_5.1-3-1_arm64.deb ... 209s Unpacking r-cran-hmisc (5.1-3-1) ... 209s Selecting previously unselected package r-cran-dichromat. 209s Preparing to unpack .../385-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 209s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 209s Selecting previously unselected package r-cran-matrixstats. 209s Preparing to unpack .../386-r-cran-matrixstats_1.3.0-1_arm64.deb ... 209s Unpacking r-cran-matrixstats (1.3.0-1) ... 209s Selecting previously unselected package r-bioc-matrixgenerics. 209s Preparing to unpack .../387-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 209s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 209s Selecting previously unselected package r-cran-abind. 209s Preparing to unpack .../388-r-cran-abind_1.4-5-2_all.deb ... 209s Unpacking r-cran-abind (1.4-5-2) ... 209s Selecting previously unselected package r-bioc-s4arrays. 210s Preparing to unpack .../389-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 210s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 210s Selecting previously unselected package r-bioc-sparsearray. 210s Preparing to unpack .../390-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 210s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 210s Selecting previously unselected package r-bioc-delayedarray. 210s Preparing to unpack .../391-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 210s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 210s Selecting previously unselected package r-bioc-summarizedexperiment. 210s Preparing to unpack .../392-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 210s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 210s Selecting previously unselected package r-bioc-rhtslib. 210s Preparing to unpack .../393-r-bioc-rhtslib_2.4.1+dfsg-3build2_arm64.deb ... 210s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 210s Selecting previously unselected package r-bioc-rsamtools. 210s Preparing to unpack .../394-r-bioc-rsamtools_2.18.0+dfsg-1build2_arm64.deb ... 210s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build2) ... 210s Selecting previously unselected package r-bioc-genomicalignments. 210s Preparing to unpack .../395-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 210s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 210s Selecting previously unselected package r-cran-rjson. 210s Preparing to unpack .../396-r-cran-rjson_0.2.21-1_arm64.deb ... 210s Unpacking r-cran-rjson (0.2.21-1) ... 210s Selecting previously unselected package r-cran-restfulr. 210s Preparing to unpack .../397-r-cran-restfulr_0.0.15-1_arm64.deb ... 210s Unpacking r-cran-restfulr (0.0.15-1) ... 210s Selecting previously unselected package r-bioc-rtracklayer. 210s Preparing to unpack .../398-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 210s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 210s Selecting previously unselected package r-bioc-genomicfeatures. 210s Preparing to unpack .../399-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... 210s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 210s Selecting previously unselected package r-bioc-bsgenome. 210s Preparing to unpack .../400-r-bioc-bsgenome_1.70.2-1_all.deb ... 210s Unpacking r-bioc-bsgenome (1.70.2-1) ... 210s Selecting previously unselected package r-bioc-variantannotation. 210s Preparing to unpack .../401-r-bioc-variantannotation_1.48.1-1build2_arm64.deb ... 210s Unpacking r-bioc-variantannotation (1.48.1-1build2) ... 210s Selecting previously unselected package r-bioc-protgenerics. 211s Preparing to unpack .../402-r-bioc-protgenerics_1.34.0-1_all.deb ... 211s Unpacking r-bioc-protgenerics (1.34.0-1) ... 211s Selecting previously unselected package r-bioc-ensembldb. 211s Preparing to unpack .../403-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 211s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 211s Selecting previously unselected package r-bioc-biovizbase. 211s Preparing to unpack .../404-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 211s Unpacking r-bioc-biovizbase (1.50.0-1) ... 211s Selecting previously unselected package r-bioc-gviz. 211s Preparing to unpack .../405-r-bioc-gviz_1.46.1+dfsg-1_all.deb ... 211s Unpacking r-bioc-gviz (1.46.1+dfsg-1) ... 211s Selecting previously unselected package trinityrnaseq-examples. 211s Preparing to unpack .../406-trinityrnaseq-examples_2.15.1+dfsg-5build1_arm64.deb ... 211s Unpacking trinityrnaseq-examples (2.15.1+dfsg-5build1) ... 213s Selecting previously unselected package genometools-common. 213s Preparing to unpack .../407-genometools-common_1.6.5+ds-2.2_all.deb ... 213s Unpacking genometools-common (1.6.5+ds-2.2) ... 213s Selecting previously unselected package seqan-apps. 213s Preparing to unpack .../408-seqan-apps_2.4.0+dfsg-16_arm64.deb ... 213s Unpacking seqan-apps (2.4.0+dfsg-16) ... 213s Selecting previously unselected package autopkgtest-satdep. 213s Preparing to unpack .../409-1-autopkgtest-satdep.deb ... 213s Unpacking autopkgtest-satdep (0) ... 213s Setting up libhtscodecs2:arm64 (1.6.0-1build1) ... 213s Setting up libgclib3t64:arm64 (0.12.7+ds-5ubuntu3) ... 213s Setting up libanyevent-perl (7.170-2build6) ... 213s Setting up libjs-json (0~20221030+~1.0.8-1) ... 213s Setting up javascript-common (11+nmu1) ... 213s Package apache2 is not configured yet. Will defer actions by package javascript-common. 213s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 213s Setting up liblcms2-2:arm64 (2.14-2build1) ... 213s Setting up ncbi-data (6.1.20170106+dfsg2-2) ... 213s Setting up libpixman-1-0:arm64 (0.42.2-1build1) ... 213s Setting up libstring-approx-perl (3.28-2build4) ... 213s Setting up python3-argh (0.31.2-1) ... 214s Setting up libpaper1:arm64 (1.1.29build1) ... 214s 214s Creating config file /etc/papersize with new version 214s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 216s Regenerating fonts cache... done. 216s Setting up gff2ps (0.98l-6) ... 216s Setting up gffread (0.12.7-6) ... 216s Setting up libtre5:arm64 (0.8.0-7) ... 216s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 216s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 216s Setting up libmbedcrypto7t64:arm64 (2.28.8-1) ... 216s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 216s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 216s Setting up libtest-deep-perl (1.204-1) ... 216s Setting up python3-joblib (1.3.2-2) ... 217s Setting up libjs-popper.js (1.16.1+ds-6) ... 217s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 217s Setting up libxcb-render0:arm64 (1.17.0-2) ... 217s Setting up libclone-perl:arm64 (0.46-1build3) ... 217s Setting up libalgorithm-diff-perl (1.201-1) ... 217s Setting up htslib-test (1.20+ds-1) ... 217s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 217s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 217s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 217s Setting up fonts-lyx (2.4.1-1) ... 217s Setting up libhtml-tagset-perl (3.24-1) ... 217s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 217s Setting up unzip (6.0-28ubuntu5) ... 217s Setting up liblwp-mediatypes-perl (6.04-2) ... 217s Setting up python3-threadpoolctl (3.1.0-1) ... 217s Setting up x11-common (1:7.7+23ubuntu3) ... 217s Setting up libtry-tiny-perl (0.31-2) ... 217s Setting up node-html5shiv (3.7.3+dfsg-5) ... 217s Setting up libpq5:arm64 (16.3-1) ... 217s Setting up perl-openssl-defaults:arm64 (7build3) ... 217s Setting up libcommon-sense-perl:arm64 (3.75-3build3) ... 217s Setting up libxml-namespacesupport-perl (1.12-2) ... 217s Setting up libanyevent-http-perl (2.25-2) ... 217s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 217s Setting up libencode-locale-perl (1.05-3) ... 217s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 217s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 217s Setting up libpaper-utils (1.1.29build1) ... 217s Setting up python3-zipp (3.19.2-2) ... 217s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ... 217s Setting up python3-freetype (2.4.0-2) ... 218s Setting up emboss-data (6.6.0+dfsg-12ubuntu2) ... 218s Setting up python3-networkx (3.2.1-4ubuntu1) ... 219s Setting up libjs-modernizr (3.13.0-0.1) ... 219s Setting up diamond-aligner (2.1.9-1) ... 219s Setting up libcairo2:arm64 (1.18.0-3build1) ... 219s Setting up bowtie2 (2.5.3-1) ... 219s Setting up augustus-doc (3.5.0+dfsg-4build5) ... 219s Setting up libjs-es5-shim (4.6.7-2) ... 219s Setting up unicode-data (15.1.0-1) ... 219s Setting up python3-simplejson (3.19.2-1build2) ... 219s Setting up libgd-perl (2.78-1build3) ... 219s Setting up libxml-sax-base-perl (1.09-3) ... 219s Setting up libio-string-perl (1.08-4) ... 219s Setting up python3-decorator (5.1.1-5) ... 219s Setting up zip (3.0-13build1) ... 219s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 219s Setting up libblas3:arm64 (3.12.0-3build1) ... 219s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 219s Setting up libclass-data-inheritable-perl (0.08-3) ... 219s Setting up python3-packaging (24.0-1) ... 219s Setting up libtext-diff-perl (1.45-2) ... 219s Setting up python3-brotli (1.1.0-2build2) ... 220s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 220s Setting up python3-cycler (0.12.1-1) ... 220s Setting up libanyevent-cachedns-perl (0.08-3) ... 220s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 220s Setting up seqan-apps (2.4.0+dfsg-16) ... 220s Setting up libjs-d3 (3.5.17-4) ... 220s Setting up python3-kiwisolver (1.4.5-1) ... 220s Setting up libatomic1:arm64 (14.1.0-1ubuntu1) ... 220s Setting up libio-html-perl (1.004-3) ... 220s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 220s Setting up liblist-moreutils-xs-perl (0.430-4) ... 220s Setting up emboss-test (6.6.0+dfsg-12ubuntu2) ... 220s Setting up libjs-prototype (1.7.3-1) ... 220s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ... 220s Setting up libcapture-tiny-perl (0.48-2) ... 220s Setting up libtimedate-perl (2.3300-2) ... 220s Setting up libubsan1:arm64 (14.1.0-1ubuntu1) ... 220s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 220s Setting up libdata-stag-perl (0.14-3) ... 220s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 220s Setting up libhwasan0:arm64 (14.1.0-1ubuntu1) ... 220s Setting up pigz (2.8-1) ... 220s Setting up libasan8:arm64 (14.1.0-1ubuntu1) ... 220s Setting up libapr1t64:arm64 (1.7.2-3.2) ... 220s Setting up libjson-perl (4.10000-1) ... 220s Setting up liblua5.1-0:arm64 (5.1.5-9build2) ... 220s Setting up libxslt1.1:arm64 (1.1.39-0exp1build1) ... 220s Setting up libhts3t64:arm64 (1.20+ds-1) ... 220s Setting up libsub-uplevel-perl (0.2800-3) ... 220s Setting up liblua5.4-0:arm64 (5.4.6-3build2) ... 220s Setting up libopenjp2-7:arm64 (2.5.0-2build3) ... 220s Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ... 220s Setting up libthai-data (0.1.29-2build1) ... 220s Setting up python3-dateutil (2.9.0-2) ... 220s Setting up node-bootstrap-sass (3.4.3-2) ... 220s Setting up sgml-base (1.31) ... 220s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 220s Setting up libdevel-stacktrace-perl (2.0500-1) ... 220s Setting up apache2-data (2.4.59-2ubuntu2) ... 220s Setting up libdevel-symdump-perl (2.18-5) ... 220s Setting up libbio-perl-perl (1.7.8-1) ... 220s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 220s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 220s Setting up pandoc-data (3.1.3-2build2) ... 220s Setting up libtsan2:arm64 (14.1.0-1ubuntu1) ... 220s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 220s Setting up bedtools-test (2.31.1+dfsg-2) ... 220s Setting up libexporter-tiny-perl (1.006002-1) ... 220s Setting up libterm-readkey-perl (2.38-2build4) ... 220s Setting up python3-mpmath (1.3.0-1) ... 221s Setting up python3-argcomplete (3.4.0-1) ... 221s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 221s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 221s Setting up gff2aplot (2.0-15) ... 221s Setting up node-normalize.css (8.0.1-5) ... 221s Setting up python3-appdirs (1.4.4-4) ... 221s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 221s Setting up xdg-utils (1.2.1-0ubuntu1) ... 221s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 221s Setting up liburi-perl (5.28-1) ... 221s Setting up sqlite3 (3.46.0-1) ... 221s Setting up libdbi-perl:arm64 (1.643-4build3) ... 221s Setting up liblsan0:arm64 (14.1.0-1ubuntu1) ... 221s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 221s Setting up libitm1:arm64 (14.1.0-1ubuntu1) ... 221s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 221s Setting up libnet-ssleay-perl:arm64 (1.94-1build4) ... 221s Setting up python3-sympy (1.12-8) ... 228s Setting up libaprutil1t64:arm64 (1.6.3-2ubuntu1) ... 228s Setting up libice6:arm64 (2:1.0.10-1build3) ... 228s Setting up libhttp-date-perl (6.06-1) ... 228s Setting up liblapack3:arm64 (3.12.0-3build1) ... 228s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 228s Setting up libxft2:arm64 (2.3.6-1build1) ... 228s Setting up libmbedx509-1t64:arm64 (2.28.8-1) ... 228s Setting up python3-pysam (0.22.1+ds-2) ... 228s Setting up python3-cairo (1.26.1-1) ... 229s Setting up libfile-listing-perl (6.16-1) ... 229s Setting up python3-importlib-metadata (8.0.0-2) ... 229s Setting up libjs-scriptaculous (1.9.0-3) ... 229s Setting up liblist-moreutils-perl (0.430-2) ... 229s Setting up libtest-warn-perl (0.37-2) ... 229s Setting up libtk8.6:arm64 (8.6.14-1build1) ... 229s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 229s Setting up libtest-differences-perl (0.71-1) ... 229s Setting up libnet-http-perl (6.23-1) ... 229s Setting up libdbd-pg-perl (3.18.0-1build3) ... 229s Setting up libexception-class-perl (1.45-1) ... 229s Setting up libaprutil1-ldap:arm64 (1.6.3-2ubuntu1) ... 229s Setting up xfonts-utils (1:7.7+6build3) ... 229s Setting up libaprutil1-dbd-sqlite3:arm64 (1.6.3-2ubuntu1) ... 229s Setting up libxml-sax-perl (1.02+dfsg-3) ... 229s update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... 229s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 230s 230s Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version 230s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 230s Setting up samtools (1.20-3) ... 230s Setting up python3-fs (2.4.16-4) ... 231s Setting up libthai0:arm64 (0.1.29-2build1) ... 231s Setting up python3-xopen (1.7.0-2) ... 231s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 231s Setting up pandoc (3.1.3+ds-3build1) ... 231s Setting up libtest-exception-perl (0.43-3) ... 231s Setting up python3-rlpycairo (0.3.0-3) ... 231s Setting up libraqm0:arm64 (0.10.1-1build1) ... 231s Setting up python3-numpy (1:1.26.4+ds-10) ... 233s Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ... 233s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... 233s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... 233s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 234s Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version 234s Setting up libwww-robotrules-perl (6.02-1) ... 234s Setting up libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ... 234s Setting up libmbedtls14t64:arm64 (2.28.8-1) ... 234s Setting up python3-lxml:arm64 (5.2.1-1) ... 234s Setting up xml-core (0.19) ... 234s Setting up libhtml-parser-perl:arm64 (3.82-1) ... 234s Setting up python3-contourpy (1.0.7-3) ... 234s Setting up libdbd-sqlite3-perl:arm64 (1.74-1build3) ... 234s Setting up libsm6:arm64 (2:1.2.3-1build3) ... 234s Setting up libio-socket-ssl-perl (2.085-1) ... 234s Setting up libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ... 234s Setting up python3-dnaio (1.2.0-2build1) ... 235s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 235s Setting up libhttp-message-perl (6.45-1ubuntu1) ... 235s Setting up apache2-utils (2.4.59-2ubuntu2) ... 235s Setting up python3-pyfaidx (0.8.1.1-2) ... 235s Setting up libhttp-negotiate-perl (6.01-2) ... 235s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 235s Setting up python3-pybedtools (0.10.0-1) ... 235s Setting up libboost1.83-dev:arm64 (1.83.0-3ubuntu1) ... 235s Setting up libstatistics-descriptive-perl (3.0801-1) ... 235s Setting up python3-scipy (1.12.0-2) ... 239s Setting up libhttp-cookies-perl (6.11-1) ... 239s Setting up libtest-most-perl (0.38-1) ... 239s Setting up libhtml-tree-perl (5.07-3) ... 239s Setting up blt (2.5.3+dfsg-7build1) ... 239s Setting up python3-pomegranate (0.14.8-6) ... 239s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 239s Setting up libpango-1.0-0:arm64 (1.54.0+ds-1) ... 239s Setting up libcgi-pm-perl (4.66-1) ... 239s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-3) ... 239s Setting up python3-tk:arm64 (3.12.3-0ubuntu1) ... 239s Setting up fonts-urw-base35 (20200910-8) ... 240s Setting up apache2-bin (2.4.59-2ubuntu2) ... 240s Setting up ncbi-blast+ (2.12.0+ds-4build2) ... 240s Setting up python3-pil:arm64 (10.3.0-2) ... 240s Setting up python3-pandas (2.1.4+dfsg-8) ... 245s Setting up python3-cutadapt (4.7-2) ... 245s Setting up python3-pil.imagetk:arm64 (10.3.0-2) ... 245s Setting up libcgi-session-perl (4.48-4) ... 245s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 245s Setting up python3-sklearn (1.4.2+dfsg-3) ... 247s Setting up libxml-simple-perl (2.25-2) ... 247s Setting up python3-reportlab (4.2.2-1) ... 248s Setting up libhttp-daemon-perl (6.16-1) ... 248s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 248s Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ... 248s Setting up proteinortho (6.3.1+dfsg-1) ... 248s Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ... 248s Setting up bioperl (1.7.8-1) ... 248s Setting up cutadapt (4.7-2) ... 248s Setting up apache2 (2.4.59-2ubuntu2) ... 248s Enabling module mpm_event. 249s Enabling module authz_core. 249s Enabling module authz_host. 249s Enabling module authn_core. 249s Enabling module auth_basic. 249s Enabling module access_compat. 249s Enabling module authn_file. 249s Enabling module authz_user. 249s Enabling module alias. 249s Enabling module dir. 249s Enabling module autoindex. 249s Enabling module env. 249s Enabling module mime. 249s Enabling module negotiation. 249s Enabling module setenvif. 249s Enabling module filter. 249s Enabling module deflate. 249s Enabling module status. 249s Enabling module reqtimeout. 249s Enabling conf charset. 249s Enabling conf localized-error-pages. 249s Enabling conf other-vhosts-access-log. 249s Enabling conf security. 249s Enabling conf serve-cgi-bin. 249s Enabling site 000-default. 250s info: Executing deferred 'a2enconf javascript-common' for package javascript-common 250s Enabling conf javascript-common. 250s Created symlink /etc/systemd/system/multi-user.target.wants/apache2.service → /usr/lib/systemd/system/apache2.service. 251s Created symlink /etc/systemd/system/multi-user.target.wants/apache-htcacheclean.service → /usr/lib/systemd/system/apache-htcacheclean.service. 252s Setting up libbio-coordinate-perl (1.7.1-4) ... 252s Setting up r-base-core (4.4.1-1) ... 253s 253s Creating config file /etc/R/Renviron with new version 253s Setting up r-cran-crayon (1.5.2-1) ... 253s Setting up r-cran-labeling (0.4.3-1) ... 253s Setting up r-cran-sourcetools (0.1.7-1-1) ... 253s Setting up r-cran-futile.options (1.0.1-3build1) ... 253s Setting up r-cran-lattice (0.22-6-1) ... 253s Setting up r-cran-nlme (3.1.165-1) ... 253s Setting up r-cran-farver (2.1.2-1) ... 253s Setting up r-cran-formatr (1.14-2) ... 253s Setting up r-cran-formula (1.2-5-1) ... 253s Setting up r-cran-xml (3.99-0.17-1) ... 253s Setting up trinityrnaseq-examples (2.15.1+dfsg-5build1) ... 253s Setting up r-cran-viridislite (0.4.2-2) ... 253s Setting up r-cran-cluster (2.1.6-1build1) ... 253s Setting up genometools-common (1.6.5+ds-2.2) ... 253s Setting up r-cran-nnet (7.3-19-2build1) ... 253s Setting up r-cran-lazyeval (0.2.2-1build1) ... 253s Setting up r-cran-commonmark (1.9.1-1) ... 253s Setting up r-cran-r6 (2.5.1-1) ... 253s Setting up r-cran-pkgkitten (0.2.3-1) ... 253s Setting up r-cran-jpeg (0.1-10-1) ... 253s Setting up r-cran-chron (2.3-61-2) ... 253s Setting up r-cran-magrittr (2.0.3-1) ... 253s Setting up r-cran-rappdirs (0.3.3-1) ... 253s Setting up r-cran-filelock (1.0.3-1) ... 253s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 253s Setting up r-cran-littler (0.3.20-1) ... 253s Setting up r-cran-bh (1.84.0-1) ... 253s Setting up r-cran-fs (1.6.4+dfsg-1) ... 253s Setting up r-cran-rcpp (1.0.12-1) ... 253s Setting up r-cran-curl (5.2.1+dfsg-1) ... 253s Setting up r-cran-codetools (0.2-20-1) ... 253s Setting up r-bioc-biocgenerics (0.48.1-2) ... 253s Setting up r-cran-rlang (1.1.4-1) ... 253s Setting up r-cran-matrixstats (1.3.0-1) ... 253s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 253s Setting up r-cran-xfun (0.45+dfsg-1) ... 253s Setting up r-cran-sys (3.4.2-1) ... 253s Setting up r-cran-plogr (0.2.0-3build1) ... 253s Setting up r-cran-withr (2.5.0-1) ... 253s Setting up r-cran-backports (1.4.1-1) ... 253s Setting up r-cran-mime (0.12-2) ... 253s Setting up r-cran-generics (0.1.3-1) ... 253s Setting up r-cran-base64enc (0.1-3-3) ... 253s Setting up r-cran-abind (1.4-5-2) ... 253s Setting up r-cran-digest (0.6.36-1) ... 253s Setting up r-cran-yaml (2.3.8-2) ... 253s Setting up r-cran-lambda.r (1.2.4-2build1) ... 253s Setting up r-bioc-protgenerics (1.34.0-1) ... 253s Setting up r-cran-evaluate (0.24.0-1) ... 253s Setting up r-cran-dbi (1.2.3-1) ... 253s Setting up r-cran-highr (0.11+dfsg-1) ... 253s Setting up r-cran-prettyunits (1.2.0-1) ... 253s Setting up r-cran-fansi (1.0.5-1) ... 253s Setting up r-cran-mass (7.3-61-1) ... 253s Setting up r-cran-checkmate (2.3.1-1) ... 253s Setting up r-cran-acepack (1.4.2-1) ... 253s Setting up r-cran-snow (1:0.4.4-2) ... 253s Setting up r-cran-data.table (1.15.4+dfsg-2.2) ... 253s Setting up r-cran-glue (1.7.0-1) ... 253s Setting up r-cran-foreign (0.8.87-1) ... 253s Setting up r-cran-bit (4.0.5-1) ... 253s Setting up r-cran-xtable (1:1.8-4-2) ... 253s Setting up r-cran-cli (3.6.2-1) ... 253s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 253s Setting up r-cran-bitops (1.0-7-1) ... 253s Setting up r-cran-bit64 (4.0.5-1) ... 253s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 253s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 253s Setting up r-cran-deldir (2.0-4-1build1) ... 253s Setting up r-cran-askpass (1.2.0-1) ... 253s Setting up r-cran-fastmap (1.1.1-1) ... 253s Setting up r-cran-png (0.1-8-1build2) ... 253s Setting up r-bioc-biobase (2.62.0-1) ... 253s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 253s Setting up r-cran-rstudioapi (0.16.0-1) ... 253s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 253s Setting up r-cran-utf8 (1.2.4-1) ... 253s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 253s Setting up r-cran-stringi (1.8.3-1) ... 253s Setting up r-cran-cpp11 (0.4.7-1) ... 253s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 253s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 253s Setting up r-cran-isoband (0.2.7-1) ... 253s Setting up r-cran-futile.logger (1.4.3-4build1) ... 253s Setting up r-cran-gtable (0.3.5+dfsg-1) ... 253s Setting up r-cran-later (1.3.2+dfsg-1) ... 253s Setting up r-cran-matrix (1.7-0-3) ... 253s Setting up r-cran-htmltools (0.5.8.1-1) ... 253s Setting up r-cran-tinytex (0.51-1) ... 253s Setting up r-cran-knitr (1.47+dfsg-1) ... 253s Setting up r-cran-mgcv (1.9-1-1) ... 253s Setting up r-bioc-dnacopy (1.76.0-1) ... 253s Setting up r-cran-cachem (1.0.8-1) ... 253s Setting up r-cran-sass (0.4.9+dfsg-1) ... 253s Setting up r-bioc-iranges (2.36.0-1) ... 253s Setting up r-cran-rjson (0.2.21-1) ... 253s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 253s Setting up r-cran-restfulr (0.0.15-1) ... 253s Setting up r-cran-vctrs (0.6.5-1) ... 253s Setting up r-cran-rcppeigen (0.3.4.0.0-1build1) ... 253s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 253s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ... 253s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 253s Setting up r-cran-stringr (1.5.1-1) ... 253s Setting up r-bioc-biocparallel (1.36.0-1) ... 253s Setting up r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 253s Setting up r-cran-xml2 (1.3.6-1) ... 253s Setting up r-cran-munsell (0.5.1-1) ... 253s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 253s Setting up r-cran-fontawesome (0.5.2-1) ... 253s Setting up r-cran-survival (3.7-0-1) ... 253s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 253s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 253s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 253s Setting up r-cran-interp (1.1-6-1) ... 253s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 253s Setting up r-cran-httr (1.4.7+dfsg-1) ... 253s Setting up r-cran-gridextra (2.3-3build1) ... 253s Setting up r-cran-hms (1.1.3-1) ... 253s Setting up r-cran-scales (1.3.0-1) ... 253s Setting up r-cran-memoise (2.0.1-1) ... 253s Setting up r-cran-promises (1.3.0+dfsg-1) ... 253s Setting up r-cran-purrr (1.0.2-1) ... 253s Setting up r-cran-blob (1.2.4-1) ... 253s Setting up r-bioc-xvector (0.42.0-1) ... 253s Setting up r-cran-dplyr (1.1.4-1) ... 253s Setting up r-cran-rsqlite (2.3.7-1) ... 253s Setting up r-cran-progress (1.2.3-1) ... 253s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 253s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 253s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 253s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 253s Setting up r-cran-rpart (4.1.23-1build1) ... 253s Setting up r-bioc-biostrings (2.70.3+dfsg-1) ... 253s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 253s Setting up r-cran-latticeextra (0.6-30-1) ... 253s Setting up r-cran-viridis (0.6.5-1) ... 253s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 253s Setting up r-cran-tidyr (1.3.1-1) ... 253s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build2) ... 253s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 253s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 253s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 253s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 253s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 253s Setting up r-bioc-annotationdbi (1.64.1-1) ... 253s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... 253s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 253s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 253s Setting up r-bioc-genomicalignments (1.38.2-1) ... 253s Setting up r-bioc-rtracklayer (1.62.0-1) ... 253s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 253s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 253s Setting up r-bioc-bsgenome (1.70.2-1) ... 253s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 253s Setting up r-bioc-variantannotation (1.48.1-1build2) ... 253s Setting up r-cran-htmltable (2.4.2-1) ... 253s Setting up r-cran-hmisc (5.1-3-1) ... 253s Setting up r-bioc-biovizbase (1.50.0-1) ... 253s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 253s Setting up liblwp-protocol-https-perl (6.14-1) ... 253s Setting up libwww-perl (6.77-1) ... 253s Setting up python3-fonttools (4.46.0-1build2) ... 254s Setting up libapache2-mod-perl2 (2.0.13-1build5) ... 254s apache2_invoke: Enable module perl 254s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 254s Setting up libbio-db-biofetch-perl (1.7.3-4) ... 254s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 256s Setting up libvm-ec2-perl (1.28-4) ... 256s Setting up libapache-dbi-perl (1.12-3) ... 256s Setting up libbio-db-gff-perl (1.7.4-1) ... 256s Setting up libbio-db-seqfeature-perl (1.7.4-2) ... 256s Setting up libbio-graphics-perl (2.40-6) ... 256s Setting up gbrowse (2.56+dfsg-12build3) ... 256s apache2_invoke: Enable configuration gbrowse 256s Processing triggers for man-db (2.12.1-2) ... 258s Processing triggers for install-info (7.1-3build2) ... 258s Processing triggers for libc-bin (2.39-0ubuntu9) ... 258s Processing triggers for ufw (0.36.2-6) ... 258s Processing triggers for sgml-base (1.31) ... 258s Setting up w3c-sgml-lib (1.3-3) ... 283s Setting up python3-biopython (1.83+dfsg1-3) ... 284s Setting up python3-gffutils (0.13-1) ... 285s Setting up cnvkit (0.9.10-2) ... 285s Setting up optimir (1.2-1) ... 285s /usr/lib/python3/dist-packages/optimir/libs/get_counts.py:453: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? 285s if prefix is '': 285s Setting up autopkgtest-satdep (0) ... 302s (Reading database ... 143887 files and directories currently installed.) 302s Removing autopkgtest-satdep (0) ... 303s autopkgtest [22:06:29]: test run-tests: [----------------------- 304s /usr/share/doc/augustus/tutorial/data/hints.rnaseq.intron.gff: is okay. 304s /usr/share/doc/augustus/tutorial/results/abinitio-browser.gff: is okay. 304s /usr/share/doc/augustus/tutorial/results/augustus-ppx.gff: is okay. 304s /usr/share/doc/augustus/tutorial/results/hints.est.gff: is okay. 304s /usr/share/doc/augustus/tutorial/results/hints.gff: is okay. 304s /usr/share/doc/augustus/tutorial/results/hints.rnaseq.ep.gff: is okay. 304s /usr/share/doc/augustus/tutorial/results/output-abinitio.gff: is okay. 304s /usr/share/doc/augustus/tutorial/results/output-browser.gff: is okay. 304s /usr/share/doc/augustus/tutorial/results/output.gff: is okay. 304s /usr/share/doc/augustus/tutorial/results/scipio.gff: is okay. 304s /usr/share/bedtools/test/fisher/tumor.gff: is okay. 304s /usr/share/bedtools/test/intersect/b.issue311.gff: is okay. 304s /usr/share/bedtools/test/intersect/gdc.gff: is okay. 304s /usr/share/bedtools/test/map/test.gff: is okay. 304s /usr/share/bedtools/test/merge/a.gff: is okay. 304s /usr/share/doc/cnvkit/examples/test/formats/example.gff: is okay. 304s /usr/share/EMBOSS/data/Efeatures.gff2: is okay. 304s /usr/share/EMBOSS/data/Efeatures.gff3: is okay. 304s /usr/share/EMBOSS/data/Etags.gff2: is okay. 304s /usr/share/EMBOSS/data/Etags.gff3: is okay. 304s /usr/share/EMBOSS/test/data/bioperl.gff3: is okay. 304s /usr/share/EMBOSS/test/data/eden1.gff3: is okay. 304s /usr/share/EMBOSS/test/data/featexample1.gff3: is okay. 304s /usr/share/EMBOSS/test/data/gmod-align.gff3: Warning: unexpected tab character in last column, line truncated: 304s ctg123 est EST_match 1050 1500 . + . ID=Match1;Name=agt830.5;Target=agt830.5 1 451 304s Warning: unexpected tab character in last column, line truncated: 304s ctg123 est EST_match 3000 3202 . + . ID=Match1;Name=agt830.5;Target=agt830.5 452 654 304s Warning: unexpected tab character in last column, line truncated: 304s ctg123 est EST_match 5410 5500 . - . ID=Match2;Name=agt830.3;Target=agt830.3 505 595 304s Warning: unexpected tab character in last column, line truncated: 304s ctg123 est EST_match 7000 7503 . - . ID=Match2;Name=agt830.3;Target=agt830.3 1 504 304s Warning: unexpected tab character in last column, line truncated: 304s ctg123 est EST_match 1050 1500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 1 451 304s Warning: unexpected tab character in last column, line truncated: 304s ctg123 est EST_match 5000 5500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 452 952 304s Warning: unexpected tab character in last column, line truncated: 304s ctg123 est EST_match 7000 7300 . + . ID=Match3;Name=agt221.5;Target=agt221.5 953 1253 304s is okay. 304s /usr/share/EMBOSS/test/data/gmod-discontinuous.gff3: is okay. 304s /usr/share/EMBOSS/test/data/gmod-eden1.gff3: Warning: unexpected tab character in last column, line truncated: 304s ctg123 example gene 1050 9000 . + . ID=EDEN;Name=EDEN;Note=protein kinase 304s is okay. 304s /usr/share/EMBOSS/test/data/gmod-sonic1.gff3: is okay. 304s /usr/share/EMBOSS/test/data/gmod-sonic2.gff3: is okay. 304s /usr/share/EMBOSS/test/data/gmod-sonic3.gff3: is okay. 304s /usr/share/EMBOSS/test/data/hba.gff: is okay. 304s /usr/share/EMBOSS/test/data/noid.gff: is okay. 304s /usr/share/EMBOSS/test/data/paamir.gff: is okay. 304s /usr/share/EMBOSS/test/data/paamir.gff3: is okay. 304s /usr/share/EMBOSS/test/data/seqexample.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_expression.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_extra.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_repeats.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_domains.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes_simple.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_remarks.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.gff3: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff: is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff: Warning: unexpected tab character in last column, line truncated: 304s ctgA est HSP 7000 7300 . + . EST agt221.5 304s Warning: unexpected tab character in last column, line truncated: 304s ctgA est HSP 7000 7200 . + . EST agt767.5 304s is okay. 304s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff: is okay. 304s /usr/share/genometools/gtdata/doc/csa_example_consensus_spliced_alignments.gff3: is okay. 304s /usr/share/genometools/gtdata/doc/csa_example_spliced_alignments.gff3: is okay. 304s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sgp1.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.tblastx.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/mhcregion/hs.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/mhcregion/mm.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs-mm.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.mm.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs-mm.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.mm.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs_utr.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm_utr.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/wublast/taf6.hs.gene.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/wublast/taf6.mm.gene.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.aplot.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.full.gff: Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641"; Start 11597; End 12218; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641"; Start 7067; End 7448; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641"; Start 5482; End 6065; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641"; Start 11198; End 11485; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641"; Start 8002; End 8402; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641"; Start 8902; End 9636; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641"; Start 10806; End 11009; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641"; Start 6393; End 6618; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641"; Start 5138; End 5426; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641"; Start 7444; End 7714; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641"; Start 5378; End 5504; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641"; Start 11954; End 12278; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641"; Start 6827; End 6924; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641"; Start 1490; End 1610; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641"; Start 10064; End 10180; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641"; Start 3564; End 3694; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641"; Start 3724; End 3837; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641"; Start 3416; End 3528; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641"; Start 2801; End 2860; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641"; Start 10323; End 10493; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641"; Start 8752; End 8825; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641"; Start 2194; End 2253; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641"; Start 1390; End 1461; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641"; Start 6007; End 6180; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641"; Start 9981; End 10063; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641"; Start 8633; End 8708; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641"; Start 10246; End 10311; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641"; Start 10244; End 10543; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641"; Start 913; End 994; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641"; Start 929; End 1212; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641"; Start 6612; End 6673; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641"; Start 6314; End 6364; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641"; Start 1748; End 1853; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641"; Start 10512; End 10581; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641"; Start 4552; End 4647; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641"; Start 1283; End 1342; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641"; Start 3670; End 3715; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641"; Start 605; End 791; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641"; Start 8525; End 8585; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641"; Start 9592; End 9647; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641"; Start 8839; End 8979; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641"; Start 1290; End 1523; Strand +; Frame .; 304s is okay. 304s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.gff: Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641" 11597 12218 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641" 7067 7448 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641" 5482 6065 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641" 11198 11485 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641" 8002 8402 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641" 8902 9636 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641" 10806 11009 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641" 6393 6618 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641" 5138 5426 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641" 7444 7714 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641" 5378 5504 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641" 11954 12278 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641" 6827 6924 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641" 1490 1610 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641" 10064 10180 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641" 3564 3694 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641" 3724 3837 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641" 3416 3528 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641" 2801 2860 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641" 10323 10493 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641" 8752 8825 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641" 2194 2253 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641" 1390 1461 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641" 6007 6180 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641" 9981 10063 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641" 8633 8708 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641" 10246 10311 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641" 10244 10543 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641" 913 994 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641" 929 1212 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641" 6612 6673 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641" 6314 6364 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641" 1748 1853 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641" 10512 10581 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641" 4552 4647 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641" 1283 1342 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641" 3670 3715 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641" 605 791 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641" 8525 8585 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641" 9592 9647 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641" 8839 8979 + .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641" 1290 1523 + .; 304s is okay. 304s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff: is okay. 304s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.gff: Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4867 5778 839 + . Target "NM_005641"; Start 11212; End 12162; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4874 5785 645 + . Target "NM_005641"; Start 11219; End 12151; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2379 2621 344 + . Target "NM_005641"; Start 8006; End 8248; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 673 1017 321 + . Target "NM_005641"; Start 5471; End 5833; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4519 4773 315 + . Target "NM_005641"; Start 10778; End 11065; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1719 1913 285 + . Target "NM_005641"; Start 7067; End 7261; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2 172 262 + . Target "NM_005641"; Start 5139; End 5309; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1212 1409 252 + . Target "NM_005641"; Start 6373; End 6564; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 762 1061 252 + . Target "NM_005641"; Start 5572; End 5880; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3432 3638 247 + . Target "NM_005641"; Start 9233; End 9439; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2378 2605 227 + . Target "NM_005641"; Start 8005; End 8232; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3140 3613 194 + . Target "NM_005641"; Start 8935; End 9414; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2116 2373 190 + . Target "NM_005641"; Start 7444; End 7698; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 6 173 188 + . Target "NM_005641"; Start 5143; End 5310; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 505 738 187 + . Target "NM_005641"; Start 5322; End 5579; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 7 174 184 + . Target "NM_005641"; Start 5144; End 5311; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1228 1458 178 + . Target "NM_005641"; Start 6368; End 6613; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1906 2100 159 + . Target "NM_005641"; Start 7265; End 7450; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1980 2348 159 + . Target "NM_005641"; Start 7329; End 7676; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1941 2126 136 + . Target "NM_005641"; Start 7288; End 7482; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1104 1226 135 + . Target "NM_005641"; Start 5927; End 6040; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 5612 5878 94 + . Target "NM_005641"; Start 12030; End 12278; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2791 2877 73 + . Target "NM_005641"; Start 676; End 744; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3083 3175 71 + . Target "NM_005641"; Start 10044; End 10178; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2773 2880 71 + . Target "NM_005641"; Start 1278; End 1358; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 683 787 65 + . Target "NM_005641"; Start 3408; End 3518; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3503 3724 63 + . Target "NM_005641"; Start 11672; End 11920; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 405 464 61 + . Target "NM_005641"; Start 1930; End 1989; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2790 3026 61 + . Target "NM_005641"; Start 6614; End 6844; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4895 5158 60 + . Target "NM_005641"; Start 11942; End 12223; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4041 4097 60 + . Target "NM_005641"; Start 6339; End 6395; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2785 2850 59 + . Target "NM_005641"; Start 10005; End 10058; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 686 784 59 + . Target "NM_005641"; Start 6667; End 6771; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3121 3186 59 + . Target "NM_005641"; Start 6873; End 6935; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3028 3171 59 + . Target "NM_005641"; Start 3684; End 3836; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3123 3182 59 + . Target "NM_005641"; Start 2946; End 3005; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 304 519 55 + . Target "NM_005641"; Start 9309; End 9518; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4041 4100 54 + . Target "NM_005641"; Start 10281; End 10340; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4047 4109 54 + . Target "NM_005641"; Start 8664; End 8726; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3031 3174 53 + . Target "NM_005641"; Start 10322; End 10477; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 686 772 53 + . Target "NM_005641"; Start 3720; End 3812; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2770 2850 53 + . Target "NM_005641"; Start 6603; End 6668; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3136 3177 53 + . Target "NM_005641"; Start 1110; End 1151; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4579 4647 52 + . Target "NM_005641"; Start 8188; End 8256; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3028 3141 52 + . Target "NM_005641"; Start 685; End 810; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2804 2836 51 + . Target "NM_005641"; Start 8525; End 8557; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3095 3175 51 + . Target "NM_005641"; Start 10407; End 10478; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4002 4097 51 + . Target "NM_005641"; Start 4547; End 4645; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4166 4249 50 + . Target "NM_005641"; Start 7241; End 7333; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 5536 5694 50 + . Target "NM_005641"; Start 11141; End 11311; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 555 608 50 + . Target "NM_005641"; Start 7342; End 7392; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 405 464 50 + . Target "NM_005641"; Start 7849; End 7908; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1447 1500 49 + . Target "NM_005641"; Start 6928; End 6978; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2916 3011 49 + . Target "NM_005641"; Start 10443; End 10541; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 931 1125 49 + . Target "NM_005641"; Start 5746; End 5943; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1501 1587 49 + . Target "NM_005641"; Start 7763; End 7849; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3028 3168 49 + . Target "NM_005641"; Start 1465; End 1587; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3121 3168 48 + . Target "NM_005641"; Start 6321; End 6365; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2792 2842 48 + . Target "NM_005641"; Start 3674; End 3715; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3083 3139 48 + . Target "NM_005641"; Start 4520; End 4585; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4029 4091 48 + . Target "NM_005641"; Start 2821; End 2880; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2913 2969 47 + . Target "NM_005641"; Start 8482; End 8538; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3118 3150 47 + . Target "NM_005641"; Start 10544; End 10576; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4047 4097 47 + . Target "NM_005641"; Start 8493; End 8543; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 689 784 47 + . Target "NM_005641"; Start 4665; End 4766; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3086 3115 47 + . Target "NM_005641"; Start 6827; End 6856; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3083 3121 47 + . Target "NM_005641"; Start 6654; End 6692; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3056 3211 47 + . Target "NM_005641"; Start 2989; End 3156; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3136 3168 46 + . Target "NM_005641"; Start 10275; End 10307; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 408 476 46 + . Target "NM_005641"; Start 1798; End 1866; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4888 4950 46 + . Target "NM_005641"; Start 10422; End 10484; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 546 590 46 + . Target "NM_005641"; Start 3051; End 3086; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2806 2844 46 + . Target "NM_005641"; Start 6047; End 6094; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 5758 5823 46 + . Target "NM_005641"; Start 10842; End 10907; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2794 2871 46 + . Target "NM_005641"; Start 3670; End 3747; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3621 3713 46 + . Target "NM_005641"; Start 4612; End 4704; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1143 1187 45 + . Target "NM_005641"; Start 8580; End 8624; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3029 3121 45 + . Target "NM_005641"; Start 1299; End 1361; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4047 4091 45 + . Target "NM_005641"; Start 3813; End 3857; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4233 4304 45 + . Target "NM_005641"; Start 2166; End 2240; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4353 4457 45 + . Target "NM_005641"; Start 2071; End 2172; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3817 3882 44 + . Target "NM_005641"; Start 9908; End 9973; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3012 3152 44 + . Target "NM_005641"; Start 8506; End 8667; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3144 3176 44 + . Target "NM_005641"; Start 10447; End 10479; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 5430 5534 44 + . Target "NM_005641"; Start 9313; End 9423; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4655 4735 44 + . Target "NM_005641"; Start 6495; End 6575; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3793 3849 44 + . Target "NM_005641"; Start 5563; End 5619; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3118 3165 44 + . Target "NM_005641"; Start 3610; End 3654; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3083 3166 44 + . Target "NM_005641"; Start 1017; End 1100; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 5625 5684 44 + . Target "NM_005641"; Start 5493; End 5552; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3138 3176 43 + . Target "NM_005641"; Start 8788; End 8826; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3654 3728 43 + . Target "NM_005641"; Start 9429; End 9503; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 405 476 43 + . Target "NM_005641"; Start 4206; End 4277; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 856 978 43 + . Target "NM_005641"; Start 6448; End 6570; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1600 1629 43 + . Target "NM_005641"; Start 4298; End 4327; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 5434 5481 43 + . Target "NM_005641"; Start 10718; End 10765; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3075 3125 43 + . Target "NM_005641"; Start 11897; End 11947; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2978 3019 43 + . Target "NM_005641"; Start 3874; End 3915; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4041 4091 43 + . Target "NM_005641"; Start 1561; End 1608; Strand +; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4866 5786 772 - . Target "NM_005641"; Start 11211; End 12152; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2258 2611 309 - . Target "NM_005641"; Start 7852; End 8238; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 762 1058 293 - . Target "NM_005641"; Start 5572; End 5877; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4518 4721 290 - . Target "NM_005641"; Start 10777; End 10992; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1718 1912 261 - . Target "NM_005641"; Start 7066; End 7260; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3392 3643 250 - . Target "NM_005641"; Start 9172; End 9441; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4 174 236 - . Target "NM_005641"; Start 5141; End 5311; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1259 1408 235 - . Target "NM_005641"; Start 6414; End 6563; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2116 2349 209 - . Target "NM_005641"; Start 7444; End 7677; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3 173 192 - . Target "NM_005641"; Start 5140; End 5310; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2 172 190 - . Target "NM_005641"; Start 5139; End 5309; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2112 2345 166 - . Target "NM_005641"; Start 7440; End 7673; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1998 2099 148 - . Target "NM_005641"; Start 7348; End 7449; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3291 3386 137 - . Target "NM_005641"; Start 9067; End 9162; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 554 769 135 - . Target "NM_005641"; Start 5386; End 5583; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1118 1225 125 - . Target "NM_005641"; Start 5941; End 6039; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 5705 5878 83 - . Target "NM_005641"; Start 12081; End 12278; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 5677 5877 76 - . Target "NM_005641"; Start 12065; End 12277; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3036 3185 73 - . Target "NM_005641"; Start 6791; End 6934; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3030 3167 67 - . Target "NM_005641"; Start 6242; End 6364; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 930 1091 66 - . Target "NM_005641"; Start 5745; End 5909; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3052 3177 65 - . Target "NM_005641"; Start 10013; End 10180; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4035 4103 65 - . Target "NM_005641"; Start 2824; End 2886; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2978 3142 64 - . Target "NM_005641"; Start 2639; End 2797; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3139 3177 61 - . Target "NM_005641"; Start 1113; End 1151; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3915 4103 60 - . Target "NM_005641"; Start 8367; End 8549; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2999 3148 60 - . Target "NM_005641"; Start 686; End 817; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3136 3180 59 - . Target "NM_005641"; Start 10439; End 10483; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3089 3190 58 - . Target "NM_005641"; Start 884; End 994; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 10281; End 10340; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2769 2870 57 - . Target "NM_005641"; Start 5032; End 5118; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 3807; End 3863; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3121 3177 56 - . Target "NM_005641"; Start 1405; End 1461; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 638 715 56 - . Target "NM_005641"; Start 10988; End 11065; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3115 3186 55 - . Target "NM_005641"; Start 6849; End 6935; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3089 3166 55 - . Target "NM_005641"; Start 4821; End 4907; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 399 542 54 - . Target "NM_005641"; Start 1789; End 1911; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2789 2944 54 - . Target "NM_005641"; Start 1282; End 1452; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3041 3163 54 - . Target "NM_005641"; Start 2112; End 2240; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 5574 5693 53 - . Target "NM_005641"; Start 11203; End 11310; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2728 3000 53 - . Target "NM_005641"; Start 4572; End 4838; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2986 3189 53 - . Target "NM_005641"; Start 3493; End 3678; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 399 503 53 - . Target "NM_005641"; Start 9591; End 9707; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 405 467 52 - . Target "NM_005641"; Start 1930; End 1992; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2785 3006 52 - . Target "NM_005641"; Start 2692; End 2925; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3142 3171 52 - . Target "NM_005641"; Start 3807; End 3836; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3139 3195 52 - . Target "NM_005641"; Start 1558; End 1614; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 224 295 51 - . Target "NM_005641"; Start 298; End 369; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2784 2855 51 - . Target "NM_005641"; Start 10004; End 10063; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2787 2855 51 - . Target "NM_005641"; Start 6611; End 6673; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3135 3176 51 - . Target "NM_005641"; Start 1109; End 1150; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3032 3148 50 - . Target "NM_005641"; Start 8535; End 8663; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3918 4088 50 - . Target "NM_005641"; Start 8541; End 8705; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3122 3190 50 - . Target "NM_005641"; Start 2945; End 3013; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3577 3663 50 - . Target "NM_005641"; Start 3545; End 3634; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2659 2865 49 - . Target "NM_005641"; Start 5924; End 6115; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3121 3171 49 - . Target "NM_005641"; Start 3480; End 3527; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3118 3171 49 - . Target "NM_005641"; Start 2809; End 2859; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 399 521 48 - . Target "NM_005641"; Start 4200; End 4301; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3135 3173 48 - . Target "NM_005641"; Start 10438; End 10476; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2905 3006 48 - . Target "NM_005641"; Start 6192; End 6299; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4020 4103 48 - . Target "NM_005641"; Start 2202; End 2279; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3139 3189 47 - . Target "NM_005641"; Start 10278; End 10328; Strand -; Frame .; 304s is okay. 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1973 2083 47 - . Target "NM_005641"; Start 1531; End 1635; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4043 4114 47 - . Target "NM_005641"; Start 3809; End 3883; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4227 4262 46 - . Target "NM_005641"; Start 10701; End 10736; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3142 3177 46 - . Target "NM_005641"; Start 8487; End 8522; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 10442; End 10495; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3577 3639 46 - . Target "NM_005641"; Start 10736; End 10804; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3077 3163 46 - . Target "NM_005641"; Start 6691; End 6771; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1179 1295 46 - . Target "NM_005641"; Start 7256; End 7369; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4040 4096 46 - . Target "NM_005641"; Start 6338; End 6394; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 3495; End 3548; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 903 1046 45 - . Target "NM_005641"; Start 41; End 181; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1882 1920 45 - . Target "NM_005641"; Start 9717; End 9755; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2138 2248 45 - . Target "NM_005641"; Start 207; End 329; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4556 4660 45 - . Target "NM_005641"; Start 6331; End 6435; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2802 2915 45 - . Target "NM_005641"; Start 3675; End 3797; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4041 4067 45 - . Target "NM_005641"; Start 812; End 838; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3104 3148 44 - . Target "NM_005641"; Start 10530; End 10574; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 949 984 44 - . Target "NM_005641"; Start 6325; End 6360; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 2110 2166 44 - . Target "NM_005641"; Start 12002; End 12058; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4348 4377 44 - . Target "NM_005641"; Start 2060; End 2089; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3140 3181 43 - . Target "NM_005641"; Start 8790; End 8831; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4529 4606 43 - . Target "NM_005641"; Start 10185; End 10262; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 1189 1383 43 - . Target "NM_005641"; Start 6370; End 6537; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3119 3193 43 - . Target "NM_005641"; Start 4864; End 4938; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 3120 3167 43 - . Target "NM_005641"; Start 1542; End 1586; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 632 706 43 - . Target "NM_005641"; Start 9145; End 9219; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4355 4378 43 - . Target "NM_005641"; Start 2069; End 2092; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4352 4402 43 - . Target "NM_005641"; Start 2070; End 2120; Strand -; Frame .; 304s Warning: unexpected tab character in last column, line truncated: 304s NM_009315 TBLASTX hsp 4639 4668 43 - . Target "NM_005641"; Start 3306; End 3335; Strand -; Frame .; 304s /usr/share/doc/gff2ps/test-data/Hsap_BTK_annotation.gff: is okay. 304s /usr/share/doc/gff2ps/test-data/Hsap_BTK_geneid.gff: Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 1728 1787 0.09 - 0 gene_1 # AA is okay. 304s /usr/share/doc/gff2ps/test-data/Hsap_BTK_genscan.gff: 212:231 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 2506 2618 2.93 - 2 gene_1 # AA 174:211 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 4112 4225 0.50 - 2 gene_1 # AA 136:174 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 8833 8959 -0.24 - 0 gene_1 # AA 94:136 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 9956 10089 1.98 - 2 gene_1 # AA 49: 93 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 13081 13159 0.13 - 0 gene_1 # AA 23: 49 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 First 13984 14049 -0.61 - 0 gene_1 # AA 1: 22 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Terminal 17520 17785 4.22 - 2 gene_2 # AA 86:174 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 First 19296 19551 14.31 - 0 gene_2 # AA 1: 86 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Terminal 76391 76462 1.12 - 0 gene_3 # AA 636:659 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 79700 79857 1.52 - 2 gene_3 # AA 583:635 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 80376 80494 0.93 - 1 gene_3 # AA 543:583 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 81136 81200 0.46 - 0 gene_3 # AA 522:543 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 82558 82774 5.08 - 1 gene_3 # AA 449:521 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 83290 83533 4.90 - 2 gene_3 # AA 368:449 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 84816 84943 0.10 - 1 gene_3 # AA 325:368 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 85123 85202 1.44 - 0 gene_3 # AA 299:325 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 85799 85853 0.18 - 1 gene_3 # AA 280:298 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 86594 86656 1.66 - 1 gene_3 # AA 259:280 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 87074 87261 4.48 - 0 gene_3 # AA 197:259 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 88679 88746 -0.20 - 2 gene_3 # AA 174:196 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 89067 89195 2.37 - 2 gene_3 # AA 131:174 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 96504 96585 -1.14 - 0 gene_3 # AA 104:131 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 98139 98207 2.20 - 0 gene_3 # AA 81:103 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 101042 101140 1.03 - 0 gene_3 # AA 48: 80 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 First 101650 101790 2.04 - 0 gene_3 # AA 1: 47 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 First 117154 117294 -1.72 + 0 gene_4 # AA 1: 47 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 117965 118070 4.71 + 0 gene_4 # AA 48: 83 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 118261 118328 1.96 + 2 gene_4 # AA 83:105 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Terminal 122234 122254 -1.95 + 0 gene_4 # AA 106:112 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Terminal 124315 124605 1.49 - 0 gene_5 # AA 321:417 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 124876 125073 4.19 - 0 gene_5 # AA 255:320 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 125291 125452 1.81 - 0 gene_5 # AA 201:254 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 128085 128315 6.42 - 0 gene_5 # AA 124:200 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 130317 130491 3.37 - 1 gene_5 # AA 65:123 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 First 134216 134409 3.06 - 0 gene_5 # AA 1: 65 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Single 138576 139844 33.14 + 0 gene_6 # AA 1:423 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 First 144801 145043 4.49 + 0 gene_7 # AA 1: 81 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 170448 170661 4.00 + 0 gene_7 # AA 82:153 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK geneid_v1.0 Internal 172504 172550 0.78 + 2 gene_7 # AA 153:168 304s is okay. 304s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgp3X.gff: is okay. 304s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgpFO.gff: Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 4565 4627 8.56 - 0 gene_1 # AA 149:169 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 9956 10143 23.75 - 2 gene_1 # AA 86:148 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X First 62698 62700 -9.86 + 0 gene_2 # AA 1: 1 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Terminal 67179 67508 54.90 + 0 gene_2 # AA 2:111 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Terminal 73005 73235 25.73 - 0 gene_3 # AA 75:151 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X First 74949 75170 18.73 - 0 gene_3 # AA 1: 74 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Terminal 79661 79857 26.63 - 2 gene_4 # AA 643:708 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 80376 80494 21.80 - 1 gene_4 # AA 603:643 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 81136 81200 -1.59 - 0 gene_4 # AA 582:603 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 82558 82813 51.33 - 1 gene_4 # AA 496:581 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 83290 83533 36.85 - 2 gene_4 # AA 415:496 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 84015 84089 4.73 - 2 gene_4 # AA 390:415 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 84816 84943 22.24 - 1 gene_4 # AA 347:390 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 85123 85202 -0.04 - 0 gene_4 # AA 321:347 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 85799 85853 7.75 - 1 gene_4 # AA 302:320 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 86594 86656 13.00 - 1 gene_4 # AA 281:302 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 87074 87261 30.63 - 0 gene_4 # AA 219:281 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 88679 88746 2.93 - 2 gene_4 # AA 196:218 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 89067 89195 23.15 - 2 gene_4 # AA 153:196 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 96504 96585 8.97 - 0 gene_4 # AA 126:153 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 98139 98207 0.53 - 0 gene_4 # AA 103:125 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 101042 101140 16.57 - 0 gene_4 # AA 70:102 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X First 101650 101856 25.46 - 0 gene_4 # AA 1: 69 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X First 117550 117552 -2.98 + 0 gene_5 # AA 1: 1 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 117965 118070 22.92 + 0 gene_5 # AA 2: 37 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 118261 118328 16.58 + 2 gene_5 # AA 37: 59 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 121841 121963 15.59 + 0 gene_5 # AA 60:100 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Terminal 122234 122254 -4.89 + 0 gene_5 # AA 101:107 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Terminal 124315 124605 22.92 - 0 gene_6 # AA 299:395 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 124876 125073 18.14 - 0 gene_6 # AA 233:298 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 125291 125439 21.75 - 2 gene_6 # AA 183:232 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 128138 128315 26.47 - 0 gene_6 # AA 124:183 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Internal 130317 130491 29.80 - 1 gene_6 # AA 65:123 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X First 134216 134409 27.80 - 0 gene_6 # AA 1: 65 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Single 138495 139844 385.08 + 0 gene_7 # AA 1:450 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X First 143504 143527 -6.11 + 0 gene_8 # AA 1: 8 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.3X Terminal 170195 170470 60.77 + 0 gene_8 # AA 9:100 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 2506 2618 3.13 - 2 gene_1 # AA 86:123 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Terminal 73005 73166 23.20 - 0 gene_2 # AA 45: 98 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol First 75039 75170 14.19 - 0 gene_2 # AA 1: 44 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Terminal 76391 76462 7.44 - 0 gene_3 # AA 692:715 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 79700 79857 27.01 - 2 gene_3 # AA 639:691 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 80376 80494 22.45 - 1 gene_3 # AA 599:639 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 81136 81200 8.61 - 0 gene_3 # AA 578:599 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 82558 82774 44.53 - 1 gene_3 # AA 505:577 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 83290 83533 36.85 - 2 gene_3 # AA 424:505 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 84015 84089 4.73 - 2 gene_3 # AA 399:424 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 84816 84943 22.49 - 1 gene_3 # AA 356:399 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 85123 85202 -0.04 - 0 gene_3 # AA 330:356 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 85799 85853 7.75 - 1 gene_3 # AA 311:329 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 86594 86656 13.00 - 1 gene_3 # AA 290:311 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 87074 87261 30.63 - 0 gene_3 # AA 228:290 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 88679 88746 2.93 - 2 gene_3 # AA 205:227 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 89067 89195 23.15 - 2 gene_3 # AA 162:205 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 96504 96585 8.97 - 0 gene_3 # AA 135:162 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 98139 98207 9.18 - 0 gene_3 # AA 112:134 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 101042 101140 16.57 - 0 gene_3 # AA 79:111 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 101650 101839 30.76 - 1 gene_3 # AA 15: 78 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol First 112445 112488 -1.77 - 0 gene_3 # AA 1: 15 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol First 117550 117552 -2.98 + 0 gene_4 # AA 1: 1 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 117965 118070 22.92 + 0 gene_4 # AA 2: 37 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 118261 118328 16.58 + 2 gene_4 # AA 37: 59 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 121841 121963 15.59 + 0 gene_4 # AA 60:100 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Terminal 122234 122254 -4.89 + 0 gene_4 # AA 101:107 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Terminal 124315 124605 22.92 - 0 gene_5 # AA 334:430 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 124876 125073 37.51 - 0 gene_5 # AA 268:333 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 125291 125452 26.77 - 0 gene_5 # AA 214:267 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 127172 127263 5.78 - 2 gene_5 # AA 183:213 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 128138 128315 37.95 - 0 gene_5 # AA 124:183 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 130317 130491 30.15 - 1 gene_5 # AA 65:123 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol First 134216 134409 27.80 - 0 gene_5 # AA 1: 65 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Single 138495 139844 270.80 + 0 gene_6 # AA 1:450 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol First 170637 170661 -0.90 + 0 gene_7 # AA 1: 9 304s Warning: unexpected tab character in last column, line truncated: 304s Hsap_BTK SGP.homol Internal 172504 172550 2.43 + 2 gene_7 # AA 9: 24 304s is okay. 304s /usr/share/htslib-test/test/tabix/gff_file.gff: is okay. 304s /usr/share/doc/libbio-graphics-perl/examples/feature_data.gff: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gff: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/gms2_example.gff3: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/hybrid1.gff3: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/intro_docs_example.gff: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/issue167.gff: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/issue_197.gff: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/keyval_sep_in_attrs.gff: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/random-chr.gff: is okay. 304s /usr/lib/python3/dist-packages/gffutils/test/data/synthetic.gff3: is okay. 304s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v21.gff3: is okay. 304s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v22.gff3: is okay. 304s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3: is okay. 304s /usr/share/doc/proteinortho/examples/C.gff: is okay. 304s /usr/share/doc/proteinortho/examples/C2.gff: is okay. 304s /usr/share/doc/proteinortho/examples/E.gff: is okay. 304s /usr/share/doc/proteinortho/examples/L.gff: is okay. 304s /usr/share/doc/proteinortho/examples/M.gff: is okay. 304s /usr/lib/python3/dist-packages/pybedtools/test/data/d.gff: is okay. 304s /usr/lib/python3/dist-packages/pybedtools/test/data/exons.gff: is okay. 304s /usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff: is okay. 304s /usr/lib/python3/dist-packages/pybedtools/test/data/hg19.gff: is okay. 304s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/ITAG4.1_gene_models.subset.gff: is okay. 304s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/NC_011025.gff: is okay. 304s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v1.gff3: is okay. 304s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.gff3: is okay. 304s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff: is okay. 304s /usr/lib/R/site-library/Gviz/extdata/test.gff: is okay. 304s /usr/lib/R/site-library/Gviz/extdata/test.gff1: is okay. 304s /usr/lib/R/site-library/Gviz/extdata/test.gff3: is okay. 304s /usr/lib/R/site-library/Rhtslib/testdata/tabix/gff_file.gff: is okay. 304s /usr/lib/R/site-library/rtracklayer/tests/gtf.gff: Warning: unexpected tab character in last column, line truncated: 304s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22572990 22573061 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1"; 304s Warning: unexpected tab character in last column, line truncated: 304s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22572990 22573010 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1"; 304s Warning: unexpected tab character in last column, line truncated: 304s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22568081 22568323 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1"; 304s Warning: unexpected tab character in last column, line truncated: 304s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22568081 22568323 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1"; 304s Warning: unexpected tab character in last column, line truncated: 304s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22566859 22567246 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1"; 304s Warning: unexpected tab character in last column, line truncated: 304s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22566977 22567246 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1"; 304s is okay. 304s /usr/lib/R/site-library/rtracklayer/tests/v1.gff: is okay. 304s /usr/lib/R/site-library/rtracklayer/tests/v3.gff: is okay. 304s /usr/share/doc/seqan-apps/gustaf/example/stellar.gff: is okay. 304s /usr/share/doc/seqan-apps/insegt/example/annotations.gff: is okay. 304s /usr/share/doc/seqan-apps/insegt/example/readOutput.gff: is okay. 304s /usr/share/doc/seqan-apps/insegt/example/tupleOutput.gff: is okay. 304s /usr/share/doc/seqan-apps/snp_store/example/exampleReads.gff: is okay. 304s /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff: is okay. 305s autopkgtest [22:06:31]: test run-tests: -----------------------] 305s autopkgtest [22:06:31]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 305s run-tests PASS 306s autopkgtest [22:06:32]: @@@@@@@@@@@@@@@@@@@@ summary 306s run-tests PASS 310s nova [W] Skipping flock in bos03-arm64 310s Creating nova instance adt-oracular-arm64-gffread-20240709-213513-juju-7f2275-prod-proposed-migration-environment-2-593482d9-4141-4d25-a822-68ff586ae7a7 from image adt/ubuntu-oracular-arm64-server-20240709.img (UUID c10677d5-413a-48ca-9538-80e66540118f)...