0s autopkgtest [19:22:54]: starting date and time: 2024-06-22 19:22:54+0000 0s autopkgtest [19:22:54]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [19:22:54]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zt3ib_1p/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gffread --apt-upgrade gffread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gffread/0.12.7-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-5.secgroup --name adt-oracular-arm64-gffread-20240622-181239-juju-7f2275-prod-proposed-migration-environment-2-f6dfbe7d-cc81-48b7-981f-b7a5a7aa5cbd --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 1704s autopkgtest [19:51:18]: testbed dpkg architecture: arm64 1705s autopkgtest [19:51:19]: testbed apt version: 2.9.5 1705s autopkgtest [19:51:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1709s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 1712s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 1713s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [417 kB] 1713s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [56.2 kB] 1713s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3884 B] 1713s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [109 kB] 1713s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [33.3 kB] 1713s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [343 kB] 1713s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8312 B] 1714s Fetched 1088 kB in 6s (195 kB/s) 1715s Reading package lists... 1728s Reading package lists... 1728s Building dependency tree... 1728s Reading state information... 1729s Calculating upgrade... 1729s The following packages will be upgraded: 1729s binutils binutils-aarch64-linux-gnu binutils-common less libbinutils 1729s libctf-nobfd0 libctf0 libgprofng0 libpci3 libsframe1 pciutils pollinate 1729s sensible-utils 1731s 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1731s Need to get 5670 kB of archives. 1731s After this operation, 1769 kB of additional disk space will be used. 1731s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 sensible-utils all 0.0.23 [24.8 kB] 1731s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 less arm64 643-1 [157 kB] 1731s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 pciutils arm64 1:3.13.0-1 [88.9 kB] 1731s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libpci3 arm64 1:3.13.0-1 [36.3 kB] 1731s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libgprofng0 arm64 2.42.50.20240618-1ubuntu1 [777 kB] 1731s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libctf0 arm64 2.42.50.20240618-1ubuntu1 [95.4 kB] 1731s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libctf-nobfd0 arm64 2.42.50.20240618-1ubuntu1 [99.7 kB] 1731s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 binutils-aarch64-linux-gnu arm64 2.42.50.20240618-1ubuntu1 [3319 kB] 1732s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 binutils arm64 2.42.50.20240618-1ubuntu1 [18.1 kB] 1732s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 libbinutils arm64 2.42.50.20240618-1ubuntu1 [774 kB] 1732s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 binutils-common arm64 2.42.50.20240618-1ubuntu1 [243 kB] 1732s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 libsframe1 arm64 2.42.50.20240618-1ubuntu1 [14.5 kB] 1732s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 pollinate all 4.33-4ubuntu1 [22.8 kB] 1734s Fetched 5670 kB in 2s (2618 kB/s) 1735s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78213 files and directories currently installed.) 1735s Preparing to unpack .../00-sensible-utils_0.0.23_all.deb ... 1735s Unpacking sensible-utils (0.0.23) over (0.0.22) ... 1737s Preparing to unpack .../01-less_643-1_arm64.deb ... 1737s Unpacking less (643-1) over (590-2ubuntu2.1) ... 1741s Preparing to unpack .../02-pciutils_1%3a3.13.0-1_arm64.deb ... 1741s Unpacking pciutils (1:3.13.0-1) over (1:3.12.0-1) ... 1746s Preparing to unpack .../03-libpci3_1%3a3.13.0-1_arm64.deb ... 1746s Unpacking libpci3:arm64 (1:3.13.0-1) over (1:3.12.0-1) ... 1749s Preparing to unpack .../04-libgprofng0_2.42.50.20240618-1ubuntu1_arm64.deb ... 1749s Unpacking libgprofng0:arm64 (2.42.50.20240618-1ubuntu1) over (2.42-4ubuntu2) ... 1753s Preparing to unpack .../05-libctf0_2.42.50.20240618-1ubuntu1_arm64.deb ... 1753s Unpacking libctf0:arm64 (2.42.50.20240618-1ubuntu1) over (2.42-4ubuntu2) ... 1757s Preparing to unpack .../06-libctf-nobfd0_2.42.50.20240618-1ubuntu1_arm64.deb ... 1757s Unpacking libctf-nobfd0:arm64 (2.42.50.20240618-1ubuntu1) over (2.42-4ubuntu2) ... 1759s Preparing to unpack .../07-binutils-aarch64-linux-gnu_2.42.50.20240618-1ubuntu1_arm64.deb ... 1759s Unpacking binutils-aarch64-linux-gnu (2.42.50.20240618-1ubuntu1) over (2.42-4ubuntu2) ... 1764s Preparing to unpack .../08-binutils_2.42.50.20240618-1ubuntu1_arm64.deb ... 1764s Unpacking binutils (2.42.50.20240618-1ubuntu1) over (2.42-4ubuntu2) ... 1768s Preparing to unpack .../09-libbinutils_2.42.50.20240618-1ubuntu1_arm64.deb ... 1768s Unpacking libbinutils:arm64 (2.42.50.20240618-1ubuntu1) over (2.42-4ubuntu2) ... 1770s Preparing to unpack .../10-binutils-common_2.42.50.20240618-1ubuntu1_arm64.deb ... 1770s Unpacking binutils-common:arm64 (2.42.50.20240618-1ubuntu1) over (2.42-4ubuntu2) ... 1773s Preparing to unpack .../11-libsframe1_2.42.50.20240618-1ubuntu1_arm64.deb ... 1773s Unpacking libsframe1:arm64 (2.42.50.20240618-1ubuntu1) over (2.42-4ubuntu2) ... 1782s Preparing to unpack .../12-pollinate_4.33-4ubuntu1_all.deb ... 1783s Unpacking pollinate (4.33-4ubuntu1) over (4.33-3.1ubuntu1) ... 1786s Setting up binutils-common:arm64 (2.42.50.20240618-1ubuntu1) ... 1786s Setting up less (643-1) ... 1786s Setting up libctf-nobfd0:arm64 (2.42.50.20240618-1ubuntu1) ... 1786s Setting up libsframe1:arm64 (2.42.50.20240618-1ubuntu1) ... 1786s Setting up pollinate (4.33-4ubuntu1) ... 1796s Setting up libpci3:arm64 (1:3.13.0-1) ... 1796s Setting up sensible-utils (0.0.23) ... 1796s Setting up libbinutils:arm64 (2.42.50.20240618-1ubuntu1) ... 1796s Setting up libctf0:arm64 (2.42.50.20240618-1ubuntu1) ... 1796s Setting up libgprofng0:arm64 (2.42.50.20240618-1ubuntu1) ... 1796s Setting up pciutils (1:3.13.0-1) ... 1796s Setting up binutils-aarch64-linux-gnu (2.42.50.20240618-1ubuntu1) ... 1796s Setting up binutils (2.42.50.20240618-1ubuntu1) ... 1796s Processing triggers for libc-bin (2.39-0ubuntu9) ... 1797s Processing triggers for man-db (2.12.1-2) ... 1801s Reading package lists... 1801s Building dependency tree... 1801s Reading state information... 1801s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1803s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 1803s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 1803s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 1803s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 1811s Reading package lists... 1811s Reading package lists... 1812s Building dependency tree... 1812s Reading state information... 1812s Calculating upgrade... 1812s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1812s Reading package lists... 1813s Building dependency tree... 1813s Reading state information... 1813s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1816s autopkgtest [19:53:10]: rebooting testbed after setup commands that affected boot 1824s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1830s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1863s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1896s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1929s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1962s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1995s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 2028s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 2061s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 2094s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 2104s autopkgtest [19:57:58]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 2108s autopkgtest [19:58:02]: @@@@@@@@@@@@@@@@@@@@ apt-source gffread 2111s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (dsc) [2577 B] 2111s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (tar) [404 kB] 2111s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (diff) [8940 B] 2111s gpgv: Signature made Thu Jun 20 19:11:39 2024 UTC 2111s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 2111s gpgv: issuer "emollier@debian.org" 2111s gpgv: Can't check signature: No public key 2111s dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-5.dsc: no acceptable signature found 2112s autopkgtest [19:58:06]: testing package gffread version 0.12.7-5 2112s autopkgtest [19:58:06]: build not needed 2112s autopkgtest [19:58:06]: test run-tests: preparing testbed 2114s Reading package lists... 2114s Building dependency tree... 2114s Reading state information... 2115s Starting pkgProblemResolver with broken count: 0 2115s Starting 2 pkgProblemResolver with broken count: 0 2115s Done 2115s The following additional packages will be installed: 2115s apache2 apache2-bin apache2-data apache2-utils augustus-doc bedtools-test 2115s bioperl blt bowtie2 cnvkit cutadapt diamond-aligner emboss-data emboss-test 2115s fontconfig fonts-font-awesome fonts-glyphicons-halflings fonts-lyx 2115s fonts-mathjax fonts-urw-base35 gbrowse genometools-common gff2aplot gff2ps 2115s gffread htslib-test javascript-common libalgorithm-diff-perl 2115s libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl 2115s libapache-dbi-perl libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3 2115s libaprutil1-ldap libaprutil1t64 libasan8 libatomic1 libbio-coordinate-perl 2115s libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl 2115s libbio-graphics-perl libbio-perl-perl libblas3 libboost-dev libboost1.83-dev 2115s libcairo2 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl 2115s libclass-data-inheritable-perl libclone-perl libcommon-sense-perl 2115s libdata-stag-perl libdatrie1 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl 2115s libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl 2115s libexception-class-perl libexporter-tiny-perl libfile-listing-perl 2115s libfontenc1 libgcc-13-dev libgclib3t64 libgd-perl libgfortran5 libgomp1 2115s libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl 2115s libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl 2115s libhttp-daemon-perl libhttp-date-perl libhttp-message-perl 2115s libhttp-negotiate-perl libhwasan0 libice6 libimagequant0 libio-html-perl 2115s libio-socket-ssl-perl libio-string-perl libitm1 libjs-bootstrap 2115s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 2115s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 2115s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 2115s libjs-prettify libjs-prototype libjs-scriptaculous libjs-sifter.js 2115s libjs-twitter-bootstrap-datepicker libjson-perl liblapack3 liblbfgsb0 2115s liblcms2-2 liblist-moreutils-perl liblist-moreutils-xs-perl liblsan0 2115s liblua5.1-0 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl 2115s libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libnet-http-perl 2115s libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 2115s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpq5 2115s libqhull-r8.0 libraqm0 libsm6 libstatistics-descriptive-perl 2115s libstdc++-13-dev libstring-approx-perl libsub-uplevel-perl libtcl8.6 2115s libterm-readkey-perl libtest-deep-perl libtest-differences-perl 2115s libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl 2115s libthai-data libthai0 libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl 2115s libtsan2 libubsan1 liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 2115s libwww-perl libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 2115s libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl 2115s libxml-sax-perl libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 2115s ncbi-blast+ ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css 2115s optimir pandoc pandoc-data perl-openssl-defaults pigz proteinortho 2115s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 2115s python3-biopython python3-brotli python3-cairo python3-contourpy 2115s python3-cutadapt python3-cycler python3-dateutil python3-decorator 2115s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 2115s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 2115s python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy 2115s python3-packaging python3-pandas python3-pandas-lib python3-pil 2115s python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx 2115s python3-pysam python3-reportlab python3-rlpycairo python3-scipy 2115s python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy 2115s python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2 2115s python3-xopen python3-zipp r-base-core r-bioc-annotationdbi 2115s r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache 2115s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart 2115s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 2115s r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 2115s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 2115s r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 2115s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 2115s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 2115s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 2115s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 2115s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 2115s r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli 2115s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 2115s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 2115s r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 2115s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 2115s r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 2115s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 2115s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc 2115s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 2115s r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg 2115s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 2115s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 2115s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 2115s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 2115s r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar 2115s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 2115s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 2115s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 2115s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 2115s r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny 2115s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 2115s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 2115s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr 2115s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools 2115s seqan-apps sgml-base sqlite3 tk8.6-blt2.5 trinityrnaseq-examples 2115s unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings 2115s xfonts-utils xml-core zip zlib1g-dev 2115s Suggested packages: 2115s apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser 2115s bedtools blt-demo bowtie2-examples valgrind fonts-freefont-otf 2115s | fonts-freefont-ttf fonts-texgyre gbrowse-data gbrowse-calign 2115s libfile-nfslock-perl postscript-viewer libev-perl libevent-perl 2115s libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl 2115s libboost-doc libboost1.83-doc libboost-atomic1.83-dev 2115s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 2115s libboost-contract1.83-dev libboost-coroutine1.83-dev 2115s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 2115s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 2115s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 2115s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 2115s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 2115s libboost-numpy1.83-dev libboost-program-options1.83-dev 2115s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 2115s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 2115s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 2115s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 2115s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 2115s libmldbm-perl libnet-daemon-perl libsql-statement-perl libdata-dump-perl 2115s libio-compress-brotli-perl libjs-jquery-ui-docs fonts-mathjax-extras 2115s fonts-stix libjs-mathjax-doc liblcms2-utils libcrypt-ssleay-perl 2115s libstdc++-13-doc tcl8.6 tk8.6 tre-agrep libsub-name-perl 2115s libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl nodejs 2115s texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc 2115s texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python 2115s ruby libjs-katex citation-style-language-styles debhelper bwa clustalo 2115s clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank 2115s probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml 2115s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 2115s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 2115s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 2115s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 2115s python-mpmath-doc python3-gmpy2 python3-gdal python3-pydot 2115s python3-pygraphviz gcc gfortran python-numpy-doc python3-dev python3-pytest 2115s python-pandas-doc python3-statsmodels python-pil-doc python-pomegranate-doc 2115s python-pybedtools-doc pdf-viewer python3-egenix-mxtexttools 2115s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 2115s python-sklearn-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 2115s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-go.db 2115s r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle 2115s r-cran-testthat r-bioc-all r-bioc-affy r-bioc-deseq2 r-bioc-annotate 2115s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-shortread 2115s r-cran-batchtools r-cran-mockery r-cran-webmockr r-cran-biocmanager 2115s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 2115s r-bioc-ggbio r-bioc-annotationhub r-cran-r.utils r-bioc-edger 2115s r-cran-markdown r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 2115s r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff r-cran-covr 2115s r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 2115s r-cran-rmysql r-cran-polyclip r-cran-lubridate r-cran-sp 2115s r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt 2115s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 2115s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 2115s r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild 2115s r-cran-pkgload r-cran-plm r-cran-zoo cwltool cwltool | cwl-runner 2115s sgml-base-doc sqlite3-doc 2115s Recommended packages: 2115s ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl 2115s libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl med-config tcsh 2115s | csh | c-shell graphicsmagick | imagemagick ghostscript gv 2115s | postscript-viewer libalgorithm-diff-xs-perl libasync-interrupt-perl 2115s libev-perl | libevent-perl libguard-perl libapache2-reload-perl 2115s libbsd-resource-perl libbio-scf-perl libberkeleydb-perl libgd-svg-perl 2115s bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl 2115s libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl 2115s libdbd-mysql-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl 2115s libpostscript-perl libsoap-lite-perl libsort-naturally-perl 2115s libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl 2115s libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl 2115s libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl 2115s libfreezethaw-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl 2115s libhtml-format-perl node-jquery libjson-xs-perl libdata-dump-perl 2115s libhtml-form-perl libmailtools-perl libxml-sax-expat-perl 2115s python-biopython-doc python3-pytest python3-psutil python3-bs4 2115s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 2115s python3-odf python3-openpyxl python3-tables python3-olefile 2115s fonts-dejavu-extra g++ | c++-compiler isympy-common r-recommended r-base-dev 2115s r-doc-html r-cran-testthat r-cran-future r-cran-thematic r-cran-fastmatch 2115s r-cran-devtools r-cran-tinytest r-cran-callr r-cran-covr r-cran-mockery 2115s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 2115s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 2115s r-cran-webutils r-cran-r.utils r-cran-xts r-cran-zoo r-cran-markdown 2115s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg 2115s r-cran-testit r-cran-pkgload r-cran-hexbin r-cran-mapproj r-cran-maps 2115s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf 2115s r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-readr 2115s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 2115s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr 2115s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate 2115s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit 2115s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-dt r-cran-mockr 2115s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-renv 2115s trinityrnaseq libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 2115s x11-utils x11-xserver-utils 2116s The following NEW packages will be installed: 2116s apache2 apache2-bin apache2-data apache2-utils augustus-doc 2116s autopkgtest-satdep bedtools-test bioperl blt bowtie2 cnvkit cutadapt 2116s diamond-aligner emboss-data emboss-test fontconfig fonts-font-awesome 2116s fonts-glyphicons-halflings fonts-lyx fonts-mathjax fonts-urw-base35 gbrowse 2116s genometools-common gff2aplot gff2ps gffread htslib-test javascript-common 2116s libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl 2116s libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapr1t64 2116s libaprutil1-dbd-sqlite3 libaprutil1-ldap libaprutil1t64 libasan8 libatomic1 2116s libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl 2116s libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libblas3 2116s libboost-dev libboost1.83-dev libcairo2 libcapture-tiny-perl libcgi-pm-perl 2116s libcgi-session-perl libclass-data-inheritable-perl libclone-perl 2116s libcommon-sense-perl libdata-stag-perl libdatrie1 libdbd-pg-perl 2116s libdbd-sqlite3-perl libdbi-perl libdevel-stacktrace-perl 2116s libdevel-symdump-perl libencode-locale-perl libexception-class-perl 2116s libexporter-tiny-perl libfile-listing-perl libfontenc1 libgcc-13-dev 2116s libgclib3t64 libgd-perl libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 2116s libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 2116s libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl 2116s libhttp-message-perl libhttp-negotiate-perl libhwasan0 libice6 2116s libimagequant0 libio-html-perl libio-socket-ssl-perl libio-string-perl 2116s libitm1 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 2116s libjs-highlight.js libjs-jquery libjs-jquery-datatables 2116s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 2116s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 2116s libjs-prototype libjs-scriptaculous libjs-sifter.js 2116s libjs-twitter-bootstrap-datepicker libjson-perl liblapack3 liblbfgsb0 2116s liblcms2-2 liblist-moreutils-perl liblist-moreutils-xs-perl liblsan0 2116s liblua5.1-0 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl 2116s libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libnet-http-perl 2116s libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 2116s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpq5 2116s libqhull-r8.0 libraqm0 libsm6 libstatistics-descriptive-perl 2116s libstdc++-13-dev libstring-approx-perl libsub-uplevel-perl libtcl8.6 2116s libterm-readkey-perl libtest-deep-perl libtest-differences-perl 2116s libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl 2116s libthai-data libthai0 libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl 2116s libtsan2 libubsan1 liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 2116s libwww-perl libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 2116s libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl 2116s libxml-sax-perl libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 2116s ncbi-blast+ ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css 2116s optimir pandoc pandoc-data perl-openssl-defaults pigz proteinortho 2116s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 2116s python3-biopython python3-brotli python3-cairo python3-contourpy 2116s python3-cutadapt python3-cycler python3-dateutil python3-decorator 2116s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 2116s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 2116s python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy 2116s python3-packaging python3-pandas python3-pandas-lib python3-pil 2116s python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx 2116s python3-pysam python3-reportlab python3-rlpycairo python3-scipy 2116s python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy 2116s python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2 2116s python3-xopen python3-zipp r-base-core r-bioc-annotationdbi 2116s r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache 2116s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart 2116s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 2116s r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 2116s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 2116s r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 2116s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 2116s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 2116s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 2116s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 2116s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 2116s r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli 2116s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 2116s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 2116s r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 2116s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 2116s r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 2116s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 2116s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc 2116s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 2116s r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg 2116s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 2116s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 2116s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 2116s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 2116s r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar 2116s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 2116s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 2116s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 2116s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 2116s r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny 2116s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 2116s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 2116s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr 2116s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools 2116s seqan-apps sgml-base sqlite3 tk8.6-blt2.5 trinityrnaseq-examples 2116s unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings 2116s xfonts-utils xml-core zip zlib1g-dev 2116s 0 upgraded, 410 newly installed, 0 to remove and 0 not upgraded. 2116s Need to get 860 MB/860 MB of archives. 2116s After this operation, 2871 MB of additional disk space will be used. 2116s Get:1 /tmp/autopkgtest.JFZxU7/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [900 B] 2116s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libapr1t64 arm64 1.7.2-3.2 [105 kB] 2116s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libaprutil1t64 arm64 1.6.3-2ubuntu1 [94.1 kB] 2116s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libaprutil1-dbd-sqlite3 arm64 1.6.3-2ubuntu1 [11.2 kB] 2116s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libaprutil1-ldap arm64 1.6.3-2ubuntu1 [9044 B] 2116s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 liblua5.4-0 arm64 5.4.6-3build2 [158 kB] 2116s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 apache2-bin arm64 2.4.59-2ubuntu2 [1320 kB] 2117s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 apache2-data all 2.4.59-2ubuntu2 [163 kB] 2117s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 apache2-utils arm64 2.4.59-2ubuntu2 [96.4 kB] 2117s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 apache2 arm64 2.4.59-2ubuntu2 [90.3 kB] 2117s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 sgml-base all 1.31 [11.4 kB] 2117s Get:12 http://ftpmaster.internal/ubuntu oracular/universe arm64 pigz arm64 2.8-1 [60.7 kB] 2117s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 augustus-doc all 3.5.0+dfsg-4build5 [23.5 MB] 2117s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 bedtools-test all 2.31.1+dfsg-2 [18.2 MB] 2117s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 2117s Get:16 http://ftpmaster.internal/ubuntu oracular/universe arm64 libdata-stag-perl all 0.14-3 [372 kB] 2118s Get:17 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-perl-perl all 1.7.8-1 [2580 kB] 2118s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libclass-data-inheritable-perl all 0.08-3 [8084 B] 2118s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 2118s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 libexception-class-perl all 1.45-1 [28.6 kB] 2118s Get:21 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-deep-perl all 1.204-1 [47.1 kB] 2118s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 libcapture-tiny-perl all 0.48-2 [20.2 kB] 2118s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 libalgorithm-diff-perl all 1.201-1 [41.8 kB] 2118s Get:24 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtext-diff-perl all 1.45-2 [25.6 kB] 2118s Get:25 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-differences-perl all 0.71-1 [15.8 kB] 2118s Get:26 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsub-uplevel-perl all 0.2800-3 [11.6 kB] 2118s Get:27 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-exception-perl all 0.43-3 [13.4 kB] 2118s Get:28 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-warn-perl all 0.37-2 [12.6 kB] 2118s Get:29 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtest-most-perl all 0.38-1 [21.5 kB] 2118s Get:30 http://ftpmaster.internal/ubuntu oracular/universe arm64 bioperl all 1.7.8-1 [216 kB] 2118s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 2118s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 2118s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 2118s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 2118s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 2118s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 2118s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 2118s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 2118s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 2118s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB] 2118s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 2118s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB] 2118s Get:43 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-tk arm64 3.12.3-0ubuntu1 [102 kB] 2118s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pil.imagetk arm64 10.3.0-2 [9268 B] 2118s Get:45 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB] 2118s Get:46 http://ftpmaster.internal/ubuntu oracular/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 2118s Get:47 http://ftpmaster.internal/ubuntu oracular/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] 2118s Get:48 http://ftpmaster.internal/ubuntu oracular/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB] 2118s Get:49 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2build1 [70.8 kB] 2118s Get:50 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB] 2118s Get:51 http://ftpmaster.internal/ubuntu oracular/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 2118s Get:52 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 2118s Get:53 http://ftpmaster.internal/ubuntu oracular/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 2118s Get:54 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-pil arm64 10.3.0-2 [446 kB] 2118s Get:55 http://ftpmaster.internal/ubuntu oracular/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 2118s Get:56 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 2118s Get:57 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 2118s Get:58 http://ftpmaster.internal/ubuntu oracular/main arm64 libcairo2 arm64 1.18.0-3build1 [555 kB] 2118s Get:59 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-cairo arm64 1.26.0-1 [121 kB] 2118s Get:60 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-freetype all 2.4.0-2 [81.3 kB] 2118s Get:61 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 2118s Get:62 http://ftpmaster.internal/ubuntu oracular/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 2118s Get:63 http://ftpmaster.internal/ubuntu oracular/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 2118s Get:64 http://ftpmaster.internal/ubuntu oracular/main arm64 xfonts-utils arm64 1:7.7+6build3 [93.1 kB] 2118s Get:65 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 2118s Get:66 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-reportlab all 4.2.0-2 [1130 kB] 2118s Get:67 http://ftpmaster.internal/ubuntu oracular/main arm64 xml-core all 0.19 [20.3 kB] 2118s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 2118s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-biopython arm64 1.83+dfsg1-3 [1646 kB] 2118s Get:70 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 2119s Get:71 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 2119s Get:72 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-lyx all 2.4.0-1 [171 kB] 2119s Get:73 http://ftpmaster.internal/ubuntu oracular/universe arm64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 2119s Get:74 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 2119s Get:75 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-contourpy arm64 1.0.7-3 [163 kB] 2119s Get:76 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 2119s Get:77 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] 2119s Get:78 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 2119s Get:79 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 2119s Get:80 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-scipy arm64 1.12.0-2 [15.9 MB] 2119s Get:81 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 2119s Get:82 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 2119s Get:83 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sympy all 1.12-8 [3966 kB] 2119s Get:84 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 2119s Get:85 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 2119s Get:86 http://ftpmaster.internal/ubuntu oracular/main arm64 libxslt1.1 arm64 1.1.39-0exp1build1 [166 kB] 2119s Get:87 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-lxml arm64 5.2.1-1 [1179 kB] 2119s Get:88 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] 2119s Get:89 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build1 [362 kB] 2119s Get:90 http://ftpmaster.internal/ubuntu oracular/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 2119s Get:91 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] 2119s Get:92 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-kiwisolver arm64 1.4.5-1 [48.9 kB] 2119s Get:93 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.0-1 [41.1 kB] 2119s Get:94 http://ftpmaster.internal/ubuntu oracular/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 2119s Get:95 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-matplotlib arm64 3.6.3-2ubuntu1 [5963 kB] 2120s Get:96 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [4178 kB] 2120s Get:97 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 2120s Get:98 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-joblib all 1.3.2-2 [208 kB] 2120s Get:99 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 2120s Get:100 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pomegranate arm64 0.14.8-6 [2432 kB] 2120s Get:101 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-zipp all 3.19.2-2 [10.2 kB] 2120s Get:102 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-importlib-metadata all 7.1.0-1 [19.2 kB] 2120s Get:103 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pyfaidx all 0.8.1.1-2 [29.6 kB] 2120s Get:104 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhtscodecs2 arm64 1.6.0-1build1 [78.0 kB] 2120s Get:105 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhts3t64 arm64 1.20+ds-1 [431 kB] 2121s Get:106 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pysam arm64 0.22.1+ds-2 [3412 kB] 2121s Get:107 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 2121s Get:108 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-1 [3656 kB] 2121s Get:109 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-sklearn all 1.4.2+dfsg-1 [2261 kB] 2121s Get:110 http://ftpmaster.internal/ubuntu oracular/main arm64 zip arm64 3.0-13build1 [171 kB] 2121s Get:111 http://ftpmaster.internal/ubuntu oracular/main arm64 unzip arm64 6.0-28ubuntu5 [176 kB] 2121s Get:112 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB] 2121s Get:113 http://ftpmaster.internal/ubuntu oracular/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B] 2121s Get:114 http://ftpmaster.internal/ubuntu oracular/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 2121s Get:115 http://ftpmaster.internal/ubuntu oracular/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 2121s Get:116 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 2121s Get:117 http://ftpmaster.internal/ubuntu oracular/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 2121s Get:118 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 2121s Get:119 http://ftpmaster.internal/ubuntu oracular/main arm64 libpango-1.0-0 arm64 1.54.0+ds-1 [230 kB] 2121s Get:120 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-1 [41.7 kB] 2121s Get:121 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-1 [27.2 kB] 2121s Get:122 http://ftpmaster.internal/ubuntu oracular/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 2121s Get:123 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 2121s Get:124 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 2121s Get:125 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-base-core arm64 4.4.1-1 [28.3 MB] 2122s Get:126 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 2122s Get:127 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-dnacopy arm64 1.76.0-1 [379 kB] 2122s Get:128 http://ftpmaster.internal/ubuntu oracular/universe arm64 cnvkit all 0.9.10-2 [20.5 MB] 2122s Get:129 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-xopen all 1.7.0-2 [17.0 kB] 2122s Get:130 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-dnaio arm64 1.2.0-2build1 [77.0 kB] 2122s Get:131 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cutadapt arm64 4.7-2 [181 kB] 2122s Get:132 http://ftpmaster.internal/ubuntu oracular/universe arm64 cutadapt all 4.7-2 [6766 B] 2122s Get:133 http://ftpmaster.internal/ubuntu oracular/universe arm64 diamond-aligner arm64 2.1.9-1 [1905 kB] 2122s Get:134 http://ftpmaster.internal/ubuntu oracular/universe arm64 emboss-data all 6.6.0+dfsg-12ubuntu2 [61.0 MB] 2123s Get:135 http://ftpmaster.internal/ubuntu oracular/universe arm64 emboss-test all 6.6.0+dfsg-12ubuntu2 [4801 kB] 2123s Get:136 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 2123s Get:137 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 2123s Get:138 http://ftpmaster.internal/ubuntu oracular/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 2124s Get:139 http://ftpmaster.internal/ubuntu oracular/main arm64 libgd-perl arm64 2.78-1build3 [125 kB] 2124s Get:140 http://ftpmaster.internal/ubuntu oracular/main arm64 libdevel-symdump-perl all 2.18-5 [12.6 kB] 2124s Get:141 http://ftpmaster.internal/ubuntu oracular/main arm64 liburi-perl all 5.28-1 [88.1 kB] 2124s Get:142 http://ftpmaster.internal/ubuntu oracular/main arm64 libencode-locale-perl all 1.05-3 [11.6 kB] 2124s Get:143 http://ftpmaster.internal/ubuntu oracular/main arm64 libtimedate-perl all 2.3300-2 [34.0 kB] 2124s Get:144 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-date-perl all 6.06-1 [10.2 kB] 2124s Get:145 http://ftpmaster.internal/ubuntu oracular/main arm64 libfile-listing-perl all 6.16-1 [11.3 kB] 2124s Get:146 http://ftpmaster.internal/ubuntu oracular/main arm64 libhtml-tagset-perl all 3.24-1 [14.1 kB] 2124s Get:147 http://ftpmaster.internal/ubuntu oracular/main arm64 libhtml-parser-perl arm64 3.82-1 [84.8 kB] 2124s Get:148 http://ftpmaster.internal/ubuntu oracular/main arm64 libhtml-tree-perl all 5.07-3 [200 kB] 2124s Get:149 http://ftpmaster.internal/ubuntu oracular/main arm64 libclone-perl arm64 0.46-1build3 [10.5 kB] 2124s Get:150 http://ftpmaster.internal/ubuntu oracular/main arm64 libio-html-perl all 1.004-3 [15.9 kB] 2124s Get:151 http://ftpmaster.internal/ubuntu oracular/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 2124s Get:152 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-message-perl all 6.45-1ubuntu1 [78.2 kB] 2124s Get:153 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-cookies-perl all 6.11-1 [18.2 kB] 2124s Get:154 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-negotiate-perl all 6.01-2 [12.4 kB] 2124s Get:155 http://ftpmaster.internal/ubuntu oracular/main arm64 perl-openssl-defaults arm64 7build3 [6628 B] 2124s Get:156 http://ftpmaster.internal/ubuntu oracular/main arm64 libnet-ssleay-perl arm64 1.94-1build4 [311 kB] 2124s Get:157 http://ftpmaster.internal/ubuntu oracular/main arm64 libio-socket-ssl-perl all 2.085-1 [195 kB] 2124s Get:158 http://ftpmaster.internal/ubuntu oracular/main arm64 libnet-http-perl all 6.23-1 [22.3 kB] 2124s Get:159 http://ftpmaster.internal/ubuntu oracular/main arm64 liblwp-protocol-https-perl all 6.14-1 [9040 B] 2124s Get:160 http://ftpmaster.internal/ubuntu oracular/main arm64 libtry-tiny-perl all 0.31-2 [20.8 kB] 2124s Get:161 http://ftpmaster.internal/ubuntu oracular/main arm64 libwww-robotrules-perl all 6.02-1 [12.6 kB] 2124s Get:162 http://ftpmaster.internal/ubuntu oracular/main arm64 libwww-perl all 6.77-1 [138 kB] 2124s Get:163 http://ftpmaster.internal/ubuntu oracular/main arm64 libapache2-mod-perl2 arm64 2.0.13-1build5 [777 kB] 2124s Get:164 http://ftpmaster.internal/ubuntu oracular/main arm64 libdbi-perl arm64 1.643-4build3 [719 kB] 2124s Get:165 http://ftpmaster.internal/ubuntu oracular/universe arm64 libapache-dbi-perl all 1.12-3 [40.5 kB] 2124s Get:166 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-db-biofetch-perl all 1.7.3-4 [17.1 kB] 2124s Get:167 http://ftpmaster.internal/ubuntu oracular/main arm64 libcgi-pm-perl all 4.65-1 [185 kB] 2124s Get:168 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-db-gff-perl all 1.7.4-1 [273 kB] 2124s Get:169 http://ftpmaster.internal/ubuntu oracular/main arm64 libpq5 arm64 16.3-1 [138 kB] 2124s Get:170 http://ftpmaster.internal/ubuntu oracular/universe arm64 libdbd-pg-perl arm64 3.18.0-1build3 [191 kB] 2124s Get:171 http://ftpmaster.internal/ubuntu oracular/universe arm64 libdbd-sqlite3-perl arm64 1.74-1build3 [159 kB] 2124s Get:172 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-db-seqfeature-perl all 1.7.4-2 [169 kB] 2124s Get:173 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-graphics-perl all 2.40-6 [601 kB] 2124s Get:174 http://ftpmaster.internal/ubuntu oracular/universe arm64 libbio-coordinate-perl all 1.7.1-4 [56.4 kB] 2124s Get:175 http://ftpmaster.internal/ubuntu oracular/universe arm64 libcgi-session-perl all 4.48-4 [108 kB] 2124s Get:176 http://ftpmaster.internal/ubuntu oracular/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 2124s Get:177 http://ftpmaster.internal/ubuntu oracular/main arm64 libexporter-tiny-perl all 1.006002-1 [36.8 kB] 2124s Get:178 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblist-moreutils-xs-perl arm64 0.430-4 [40.9 kB] 2124s Get:179 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblist-moreutils-perl all 0.430-2 [38.2 kB] 2124s Get:180 http://ftpmaster.internal/ubuntu oracular/universe arm64 libstatistics-descriptive-perl all 3.0801-1 [58.7 kB] 2124s Get:181 http://ftpmaster.internal/ubuntu oracular/main arm64 libhttp-daemon-perl all 6.16-1 [22.4 kB] 2124s Get:182 http://ftpmaster.internal/ubuntu oracular/main arm64 libterm-readkey-perl arm64 2.38-2build4 [23.1 kB] 2124s Get:183 http://ftpmaster.internal/ubuntu oracular/main arm64 sqlite3 arm64 3.46.0-1 [146 kB] 2124s Get:184 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-prototype all 1.7.3-1 [44.8 kB] 2124s Get:185 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-scriptaculous all 1.9.0-3 [92.6 kB] 2124s Get:186 http://ftpmaster.internal/ubuntu oracular/universe arm64 libanyevent-perl arm64 7.170-2build6 [368 kB] 2124s Get:187 http://ftpmaster.internal/ubuntu oracular/universe arm64 libanyevent-cachedns-perl all 0.08-3 [7216 B] 2124s Get:188 http://ftpmaster.internal/ubuntu oracular/main arm64 libcommon-sense-perl arm64 3.75-3build3 [20.4 kB] 2124s Get:189 http://ftpmaster.internal/ubuntu oracular/universe arm64 libanyevent-http-perl all 2.25-2 [30.3 kB] 2124s Get:190 http://ftpmaster.internal/ubuntu oracular/universe arm64 libstring-approx-perl arm64 3.28-2build4 [34.5 kB] 2124s Get:191 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-namespacesupport-perl all 1.12-2 [13.5 kB] 2124s Get:192 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-sax-base-perl all 1.09-3 [18.9 kB] 2124s Get:193 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] 2124s Get:194 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-2 [296 kB] 2124s Get:195 http://ftpmaster.internal/ubuntu oracular/main arm64 libxml-simple-perl all 2.25-2 [64.1 kB] 2124s Get:196 http://ftpmaster.internal/ubuntu oracular/universe arm64 libvm-ec2-perl all 1.28-4 [766 kB] 2124s Get:197 http://ftpmaster.internal/ubuntu oracular/universe arm64 gbrowse all 2.56+dfsg-12build3 [2181 kB] 2124s Get:198 http://ftpmaster.internal/ubuntu oracular/universe arm64 gff2aplot arm64 2.0-15 [257 kB] 2124s Get:199 http://ftpmaster.internal/ubuntu oracular/universe arm64 gff2ps all 0.98l-6 [63.1 kB] 2124s Get:200 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgclib3t64 arm64 0.12.7+ds-5ubuntu3 [154 kB] 2124s Get:201 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 gffread arm64 0.12.7-5 [63.4 kB] 2124s Get:202 http://ftpmaster.internal/ubuntu oracular/universe arm64 htslib-test all 1.20+ds-1 [1145 kB] 2124s Get:203 http://ftpmaster.internal/ubuntu oracular/main arm64 javascript-common all 11+nmu1 [5936 B] 2125s Get:204 http://ftpmaster.internal/ubuntu oracular/main arm64 libasan8 arm64 14.1.0-1ubuntu1 [2922 kB] 2126s Get:205 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14.1.0-1ubuntu1 [11.4 kB] 2126s Get:206 http://ftpmaster.internal/ubuntu oracular/main arm64 libitm1 arm64 14.1.0-1ubuntu1 [27.9 kB] 2126s Get:207 http://ftpmaster.internal/ubuntu oracular/main arm64 liblsan0 arm64 14.1.0-1ubuntu1 [1286 kB] 2126s Get:208 http://ftpmaster.internal/ubuntu oracular/main arm64 libtsan2 arm64 14.1.0-1ubuntu1 [2692 kB] 2126s Get:209 http://ftpmaster.internal/ubuntu oracular/main arm64 libubsan1 arm64 14.1.0-1ubuntu1 [1155 kB] 2126s Get:210 http://ftpmaster.internal/ubuntu oracular/main arm64 libhwasan0 arm64 14.1.0-1ubuntu1 [1604 kB] 2126s Get:211 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-13-dev arm64 13.2.0-23ubuntu4 [2470 kB] 2126s Get:212 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++-13-dev arm64 13.2.0-23ubuntu4 [2379 kB] 2126s Get:213 http://ftpmaster.internal/ubuntu oracular/main arm64 libboost1.83-dev arm64 1.83.0-3ubuntu1 [10.7 MB] 2126s Get:214 http://ftpmaster.internal/ubuntu oracular/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 2126s Get:215 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 2126s Get:216 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 2126s Get:217 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 2126s Get:218 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 2126s Get:219 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 2126s Get:220 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 2126s Get:221 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 2126s Get:222 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 2127s Get:223 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 2127s Get:224 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 2127s Get:225 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 2127s Get:226 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 2127s Get:227 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblua5.1-0 arm64 5.1.5-9build2 [115 kB] 2127s Get:228 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmbedcrypto7t64 arm64 2.28.8-1 [209 kB] 2127s Get:229 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmbedx509-1t64 arm64 2.28.8-1 [47.2 kB] 2127s Get:230 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmbedtls14t64 arm64 2.28.8-1 [82.2 kB] 2127s Get:231 http://ftpmaster.internal/ubuntu oracular/universe arm64 libtre5 arm64 0.8.0-7 [47.3 kB] 2127s Get:232 http://ftpmaster.internal/ubuntu oracular/universe arm64 ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB] 2127s Get:233 http://ftpmaster.internal/ubuntu oracular/universe arm64 ncbi-blast+ arm64 2.12.0+ds-4build2 [12.1 MB] 2127s Get:234 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 2127s Get:235 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 2127s Get:236 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 2127s Get:237 http://ftpmaster.internal/ubuntu oracular/universe arm64 bowtie2 arm64 2.5.3-1 [1262 kB] 2127s Get:238 http://ftpmaster.internal/ubuntu oracular/universe arm64 samtools arm64 1.20-3 [590 kB] 2127s Get:239 http://ftpmaster.internal/ubuntu oracular/universe arm64 optimir all 1.2-1 [1128 kB] 2127s Get:240 http://ftpmaster.internal/ubuntu oracular/universe arm64 pandoc-data all 3.1.3-2build2 [78.3 kB] 2127s Get:241 http://ftpmaster.internal/ubuntu oracular/universe arm64 pandoc arm64 3.1.3+ds-3build1 [27.7 MB] 2128s Get:242 http://ftpmaster.internal/ubuntu oracular/universe arm64 proteinortho arm64 6.3.1+dfsg-1 [340 kB] 2128s Get:243 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-argcomplete all 3.4.0-1 [34.6 kB] 2128s Get:244 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-argh all 0.31.2-1 [26.9 kB] 2128s Get:245 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-simplejson arm64 3.19.2-1build2 [53.6 kB] 2128s Get:246 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-gffutils all 0.13-1 [1081 kB] 2128s Get:247 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pybedtools arm64 0.10.0-1 [12.3 MB] 2128s Get:248 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 2128s Get:249 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 2128s Get:250 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 2128s Get:251 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 2128s Get:252 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 2128s Get:253 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 2128s Get:254 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rlang arm64 1.1.4-1 [1707 kB] 2128s Get:255 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 2129s Get:256 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 2129s Get:257 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 2129s Get:258 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 2129s Get:259 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 2129s Get:260 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 2129s Get:261 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 2129s Get:262 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 2129s Get:263 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 2129s Get:264 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 2129s Get:265 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 2129s Get:266 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rsqlite arm64 2.3.7-1 [1221 kB] 2129s Get:267 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-curl arm64 5.2.1+dfsg-1 [179 kB] 2129s Get:268 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 2129s Get:269 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 2129s Get:270 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 2129s Get:271 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 2129s Get:272 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2build2 [402 kB] 2129s Get:273 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 2129s Get:274 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 2129s Get:275 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 2129s Get:276 http://ftpmaster.internal/ubuntu oracular/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB] 2129s Get:277 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 2129s Get:278 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 2129s Get:279 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 2129s Get:280 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1build2 [793 kB] 2129s Get:281 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 2129s Get:282 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 2129s Get:283 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 2129s Get:284 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biostrings arm64 2.70.3+dfsg-1 [13.7 MB] 2130s Get:285 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 2130s Get:286 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 2130s Get:287 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 2130s Get:288 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 2130s Get:289 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 2130s Get:290 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 2130s Get:291 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 2130s Get:292 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 2130s Get:293 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 2130s Get:294 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 2130s Get:295 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 2130s Get:296 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 2130s Get:297 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 2130s Get:298 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 2130s Get:299 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 2130s Get:300 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 2130s Get:301 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 2130s Get:302 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 2130s Get:303 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 2130s Get:304 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 2131s Get:305 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 2131s Get:306 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 2131s Get:307 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 2131s Get:308 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 2131s Get:309 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 2131s Get:310 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 2131s Get:311 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 2131s Get:312 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 2131s Get:313 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 2131s Get:314 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 2131s Get:315 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 2131s Get:316 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 2131s Get:317 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 2131s Get:318 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 2131s Get:319 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-digest arm64 0.6.35-1 [195 kB] 2131s Get:320 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 2131s Get:321 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 2131s Get:322 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 2131s Get:323 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 2132s Get:324 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 2132s Get:325 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 2132s Get:326 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 2132s Get:327 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 2132s Get:328 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 2132s Get:329 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 2132s Get:330 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-gtable all 0.3.5+dfsg-1 [192 kB] 2132s Get:331 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 2132s Get:332 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mass arm64 7.3-61-1 [1107 kB] 2132s Get:333 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 2132s Get:334 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-nlme arm64 3.1.165-1 [2307 kB] 2133s Get:335 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-matrix arm64 1.7-0-3 [4109 kB] 2133s Get:336 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 2133s Get:337 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 2133s Get:338 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-cluster arm64 2.1.6-1build1 [551 kB] 2133s Get:339 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-survival arm64 3.7-0-1 [6268 kB] 2133s Get:340 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rpart arm64 4.1.23-1build1 [660 kB] 2133s Get:341 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-nnet arm64 7.3-19-2build1 [111 kB] 2133s Get:342 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-foreign arm64 0.8.86-1build1 [240 kB] 2133s Get:343 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 2133s Get:344 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-data.table arm64 1.15.4+dfsg-2.2 [1858 kB] 2133s Get:345 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 2133s Get:346 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xfun arm64 0.44+dfsg-1 [517 kB] 2133s Get:347 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 2133s Get:348 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-yaml arm64 2.3.8-2 [108 kB] 2133s Get:349 http://ftpmaster.internal/ubuntu oracular/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 2133s Get:350 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-knitr all 1.46+dfsg-1 [911 kB] 2133s Get:351 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 2133s Get:352 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 2133s Get:353 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 2133s Get:354 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 2133s Get:355 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 2133s Get:356 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1build2 [228 kB] 2133s Get:357 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 2133s Get:358 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 2133s Get:359 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 2133s Get:360 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-tinytex all 0.51-1 [145 kB] 2133s Get:361 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 2133s Get:362 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-littler arm64 0.3.20-1 [96.4 kB] 2133s Get:363 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 2133s Get:364 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 2133s Get:365 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 2133s Get:366 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-promises arm64 1.3.0+dfsg-1 [286 kB] 2133s Get:367 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 2133s Get:368 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 2133s Get:369 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 2133s Get:370 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 2133s Get:371 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 2133s Get:372 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB] 2134s Get:373 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 2134s Get:374 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 2134s Get:375 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rstudioapi all 0.16.0-1 [287 kB] 2134s Get:376 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 2134s Get:377 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 2134s Get:378 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 2134s Get:379 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 2134s Get:380 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 2134s Get:381 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 2134s Get:382 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.0-1build1 [1417 kB] 2134s Get:383 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 2134s Get:384 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 2134s Get:385 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 2134s Get:386 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-hmisc arm64 5.1-3-1 [3556 kB] 2134s Get:387 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 2134s Get:388 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-matrixstats arm64 1.3.0-1 [493 kB] 2134s Get:389 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 2134s Get:390 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 2134s Get:391 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 2134s Get:392 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 2134s Get:393 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 2134s Get:394 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 2134s Get:395 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-3build2 [1358 kB] 2134s Get:396 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1build2 [3636 kB] 2134s Get:397 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 2134s Get:398 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 2134s Get:399 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 2134s Get:400 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 2135s Get:401 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 2135s Get:402 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 2135s Get:403 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-variantannotation arm64 1.48.1-1build2 [3531 kB] 2135s Get:404 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 2135s Get:405 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 2135s Get:406 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 2136s Get:407 http://ftpmaster.internal/ubuntu oracular/universe arm64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 2136s Get:408 http://ftpmaster.internal/ubuntu oracular/universe arm64 trinityrnaseq-examples arm64 2.15.1+dfsg-5build1 [299 MB] 2147s Get:409 http://ftpmaster.internal/ubuntu oracular/universe arm64 genometools-common all 1.6.5+ds-2.2 [194 kB] 2147s Get:410 http://ftpmaster.internal/ubuntu oracular/universe arm64 seqan-apps arm64 2.4.0+dfsg-16 [11.8 MB] 2153s Preconfiguring packages ... 2153s Fetched 860 MB in 32s (26.5 MB/s) 2153s Selecting previously unselected package libapr1t64:arm64. 2154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78321 files and directories currently installed.) 2154s Preparing to unpack .../000-libapr1t64_1.7.2-3.2_arm64.deb ... 2154s Unpacking libapr1t64:arm64 (1.7.2-3.2) ... 2154s Selecting previously unselected package libaprutil1t64:arm64. 2154s Preparing to unpack .../001-libaprutil1t64_1.6.3-2ubuntu1_arm64.deb ... 2154s Unpacking libaprutil1t64:arm64 (1.6.3-2ubuntu1) ... 2155s Selecting previously unselected package libaprutil1-dbd-sqlite3:arm64. 2155s Preparing to unpack .../002-libaprutil1-dbd-sqlite3_1.6.3-2ubuntu1_arm64.deb ... 2155s Unpacking libaprutil1-dbd-sqlite3:arm64 (1.6.3-2ubuntu1) ... 2155s Selecting previously unselected package libaprutil1-ldap:arm64. 2155s Preparing to unpack .../003-libaprutil1-ldap_1.6.3-2ubuntu1_arm64.deb ... 2155s Unpacking libaprutil1-ldap:arm64 (1.6.3-2ubuntu1) ... 2155s Selecting previously unselected package liblua5.4-0:arm64. 2156s Preparing to unpack .../004-liblua5.4-0_5.4.6-3build2_arm64.deb ... 2156s Unpacking liblua5.4-0:arm64 (5.4.6-3build2) ... 2156s Selecting previously unselected package apache2-bin. 2156s Preparing to unpack .../005-apache2-bin_2.4.59-2ubuntu2_arm64.deb ... 2156s Unpacking apache2-bin (2.4.59-2ubuntu2) ... 2156s Selecting previously unselected package apache2-data. 2157s Preparing to unpack .../006-apache2-data_2.4.59-2ubuntu2_all.deb ... 2157s Unpacking apache2-data (2.4.59-2ubuntu2) ... 2157s Selecting previously unselected package apache2-utils. 2157s Preparing to unpack .../007-apache2-utils_2.4.59-2ubuntu2_arm64.deb ... 2157s Unpacking apache2-utils (2.4.59-2ubuntu2) ... 2157s Selecting previously unselected package apache2. 2158s Preparing to unpack .../008-apache2_2.4.59-2ubuntu2_arm64.deb ... 2158s Unpacking apache2 (2.4.59-2ubuntu2) ... 2158s Selecting previously unselected package sgml-base. 2160s Preparing to unpack .../009-sgml-base_1.31_all.deb ... 2160s Unpacking sgml-base (1.31) ... 2160s Selecting previously unselected package pigz. 2161s Preparing to unpack .../010-pigz_2.8-1_arm64.deb ... 2161s Unpacking pigz (2.8-1) ... 2161s Selecting previously unselected package augustus-doc. 2162s Preparing to unpack .../011-augustus-doc_3.5.0+dfsg-4build5_all.deb ... 2162s Unpacking augustus-doc (3.5.0+dfsg-4build5) ... 2164s Selecting previously unselected package bedtools-test. 2166s Preparing to unpack .../012-bedtools-test_2.31.1+dfsg-2_all.deb ... 2166s Unpacking bedtools-test (2.31.1+dfsg-2) ... 2166s Selecting previously unselected package libio-string-perl. 2167s Preparing to unpack .../013-libio-string-perl_1.08-4_all.deb ... 2167s Unpacking libio-string-perl (1.08-4) ... 2167s Selecting previously unselected package libdata-stag-perl. 2168s Preparing to unpack .../014-libdata-stag-perl_0.14-3_all.deb ... 2168s Unpacking libdata-stag-perl (0.14-3) ... 2168s Selecting previously unselected package libbio-perl-perl. 2168s Preparing to unpack .../015-libbio-perl-perl_1.7.8-1_all.deb ... 2168s Unpacking libbio-perl-perl (1.7.8-1) ... 2168s Selecting previously unselected package libclass-data-inheritable-perl. 2169s Preparing to unpack .../016-libclass-data-inheritable-perl_0.08-3_all.deb ... 2169s Unpacking libclass-data-inheritable-perl (0.08-3) ... 2169s Selecting previously unselected package libdevel-stacktrace-perl. 2169s Preparing to unpack .../017-libdevel-stacktrace-perl_2.0500-1_all.deb ... 2169s Unpacking libdevel-stacktrace-perl (2.0500-1) ... 2170s Selecting previously unselected package libexception-class-perl. 2171s Preparing to unpack .../018-libexception-class-perl_1.45-1_all.deb ... 2171s Unpacking libexception-class-perl (1.45-1) ... 2172s Selecting previously unselected package libtest-deep-perl. 2173s Preparing to unpack .../019-libtest-deep-perl_1.204-1_all.deb ... 2173s Unpacking libtest-deep-perl (1.204-1) ... 2173s Selecting previously unselected package libcapture-tiny-perl. 2174s Preparing to unpack .../020-libcapture-tiny-perl_0.48-2_all.deb ... 2174s Unpacking libcapture-tiny-perl (0.48-2) ... 2174s Selecting previously unselected package libalgorithm-diff-perl. 2176s Preparing to unpack .../021-libalgorithm-diff-perl_1.201-1_all.deb ... 2176s Unpacking libalgorithm-diff-perl (1.201-1) ... 2176s Selecting previously unselected package libtext-diff-perl. 2177s Preparing to unpack .../022-libtext-diff-perl_1.45-2_all.deb ... 2177s Unpacking libtext-diff-perl (1.45-2) ... 2178s Selecting previously unselected package libtest-differences-perl. 2181s Preparing to unpack .../023-libtest-differences-perl_0.71-1_all.deb ... 2181s Unpacking libtest-differences-perl (0.71-1) ... 2181s Selecting previously unselected package libsub-uplevel-perl. 2186s Preparing to unpack .../024-libsub-uplevel-perl_0.2800-3_all.deb ... 2186s Unpacking libsub-uplevel-perl (0.2800-3) ... 2187s Selecting previously unselected package libtest-exception-perl. 2194s Preparing to unpack .../025-libtest-exception-perl_0.43-3_all.deb ... 2194s Unpacking libtest-exception-perl (0.43-3) ... 2194s Selecting previously unselected package libtest-warn-perl. 2196s Preparing to unpack .../026-libtest-warn-perl_0.37-2_all.deb ... 2196s Unpacking libtest-warn-perl (0.37-2) ... 2205s Selecting previously unselected package libtest-most-perl. 2209s Preparing to unpack .../027-libtest-most-perl_0.38-1_all.deb ... 2209s Unpacking libtest-most-perl (0.38-1) ... 2210s Selecting previously unselected package bioperl. 2213s Preparing to unpack .../028-bioperl_1.7.8-1_all.deb ... 2213s Unpacking bioperl (1.7.8-1) ... 2213s Selecting previously unselected package libtcl8.6:arm64. 2216s Preparing to unpack .../029-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ... 2216s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 2217s Selecting previously unselected package libxrender1:arm64. 2219s Preparing to unpack .../030-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 2219s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 2220s Selecting previously unselected package libxft2:arm64. 2223s Preparing to unpack .../031-libxft2_2.3.6-1build1_arm64.deb ... 2223s Unpacking libxft2:arm64 (2.3.6-1build1) ... 2224s Selecting previously unselected package x11-common. 2226s Preparing to unpack .../032-x11-common_1%3a7.7+23ubuntu3_all.deb ... 2226s Unpacking x11-common (1:7.7+23ubuntu3) ... 2226s Selecting previously unselected package libxss1:arm64. 2229s Preparing to unpack .../033-libxss1_1%3a1.2.3-1build3_arm64.deb ... 2229s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 2230s Selecting previously unselected package libtk8.6:arm64. 2236s Preparing to unpack .../034-libtk8.6_8.6.14-1build1_arm64.deb ... 2236s Unpacking libtk8.6:arm64 (8.6.14-1build1) ... 2237s Selecting previously unselected package tk8.6-blt2.5. 2241s Preparing to unpack .../035-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 2241s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 2241s Selecting previously unselected package blt. 2243s Preparing to unpack .../036-blt_2.5.3+dfsg-7build1_arm64.deb ... 2243s Unpacking blt (2.5.3+dfsg-7build1) ... 2243s Selecting previously unselected package libblas3:arm64. 2244s Preparing to unpack .../037-libblas3_3.12.0-3build1_arm64.deb ... 2244s Unpacking libblas3:arm64 (3.12.0-3build1) ... 2244s Selecting previously unselected package libgfortran5:arm64. 2246s Preparing to unpack .../038-libgfortran5_14.1.0-1ubuntu1_arm64.deb ... 2246s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ... 2246s Selecting previously unselected package liblapack3:arm64. 2248s Preparing to unpack .../039-liblapack3_3.12.0-3build1_arm64.deb ... 2248s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 2249s Selecting previously unselected package python3-numpy. 2251s Preparing to unpack .../040-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ... 2251s Unpacking python3-numpy (1:1.26.4+ds-10) ... 2252s Selecting previously unselected package python3-tk:arm64. 2256s Preparing to unpack .../041-python3-tk_3.12.3-0ubuntu1_arm64.deb ... 2256s Unpacking python3-tk:arm64 (3.12.3-0ubuntu1) ... 2256s Selecting previously unselected package python3-pil.imagetk:arm64. 2258s Preparing to unpack .../042-python3-pil.imagetk_10.3.0-2_arm64.deb ... 2258s Unpacking python3-pil.imagetk:arm64 (10.3.0-2) ... 2258s Selecting previously unselected package libgomp1:arm64. 2261s Preparing to unpack .../043-libgomp1_14.1.0-1ubuntu1_arm64.deb ... 2261s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ... 2262s Selecting previously unselected package libimagequant0:arm64. 2265s Preparing to unpack .../044-libimagequant0_2.18.0-1build1_arm64.deb ... 2265s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 2266s Selecting previously unselected package liblcms2-2:arm64. 2269s Preparing to unpack .../045-liblcms2-2_2.14-2build1_arm64.deb ... 2269s Unpacking liblcms2-2:arm64 (2.14-2build1) ... 2270s Selecting previously unselected package libopenjp2-7:arm64. 2273s Preparing to unpack .../046-libopenjp2-7_2.5.0-2build3_arm64.deb ... 2273s Unpacking libopenjp2-7:arm64 (2.5.0-2build3) ... 2273s Selecting previously unselected package libgraphite2-3:arm64. 2277s Preparing to unpack .../047-libgraphite2-3_1.3.14-2build1_arm64.deb ... 2277s Unpacking libgraphite2-3:arm64 (1.3.14-2build1) ... 2280s Selecting previously unselected package libharfbuzz0b:arm64. 2283s Preparing to unpack .../048-libharfbuzz0b_8.3.0-2build2_arm64.deb ... 2283s Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ... 2284s Selecting previously unselected package libraqm0:arm64. 2286s Preparing to unpack .../049-libraqm0_0.10.1-1build1_arm64.deb ... 2286s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 2286s Selecting previously unselected package libwebpdemux2:arm64. 2287s Preparing to unpack .../050-libwebpdemux2_1.4.0-0.1_arm64.deb ... 2287s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 2287s Selecting previously unselected package libwebpmux3:arm64. 2289s Preparing to unpack .../051-libwebpmux3_1.4.0-0.1_arm64.deb ... 2289s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 2289s Selecting previously unselected package python3-pil:arm64. 2291s Preparing to unpack .../052-python3-pil_10.3.0-2_arm64.deb ... 2291s Unpacking python3-pil:arm64 (10.3.0-2) ... 2291s Selecting previously unselected package libpixman-1-0:arm64. 2292s Preparing to unpack .../053-libpixman-1-0_0.42.2-1build1_arm64.deb ... 2292s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 2292s Selecting previously unselected package libxcb-render0:arm64. 2293s Preparing to unpack .../054-libxcb-render0_1.17.0-2_arm64.deb ... 2293s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 2293s Selecting previously unselected package libxcb-shm0:arm64. 2294s Preparing to unpack .../055-libxcb-shm0_1.17.0-2_arm64.deb ... 2294s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 2294s Selecting previously unselected package libcairo2:arm64. 2294s Preparing to unpack .../056-libcairo2_1.18.0-3build1_arm64.deb ... 2294s Unpacking libcairo2:arm64 (1.18.0-3build1) ... 2294s Selecting previously unselected package python3-cairo. 2295s Preparing to unpack .../057-python3-cairo_1.26.0-1_arm64.deb ... 2295s Unpacking python3-cairo (1.26.0-1) ... 2295s Selecting previously unselected package python3-freetype. 2296s Preparing to unpack .../058-python3-freetype_2.4.0-2_all.deb ... 2296s Unpacking python3-freetype (2.4.0-2) ... 2297s Selecting previously unselected package python3-rlpycairo. 2297s Preparing to unpack .../059-python3-rlpycairo_0.3.0-3_all.deb ... 2297s Unpacking python3-rlpycairo (0.3.0-3) ... 2297s Selecting previously unselected package libfontenc1:arm64. 2298s Preparing to unpack .../060-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 2298s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 2298s Selecting previously unselected package xfonts-encodings. 2302s Preparing to unpack .../061-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 2302s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 2303s Selecting previously unselected package xfonts-utils. 2305s Preparing to unpack .../062-xfonts-utils_1%3a7.7+6build3_arm64.deb ... 2305s Unpacking xfonts-utils (1:7.7+6build3) ... 2306s Selecting previously unselected package fonts-urw-base35. 2308s Preparing to unpack .../063-fonts-urw-base35_20200910-8_all.deb ... 2311s Unpacking fonts-urw-base35 (20200910-8) ... 2311s Selecting previously unselected package python3-reportlab. 2314s Preparing to unpack .../064-python3-reportlab_4.2.0-2_all.deb ... 2314s Unpacking python3-reportlab (4.2.0-2) ... 2315s Selecting previously unselected package xml-core. 2316s Preparing to unpack .../065-xml-core_0.19_all.deb ... 2316s Unpacking xml-core (0.19) ... 2316s Selecting previously unselected package w3c-sgml-lib. 2316s Preparing to unpack .../066-w3c-sgml-lib_1.3-3_all.deb ... 2316s Unpacking w3c-sgml-lib (1.3-3) ... 2317s Selecting previously unselected package python3-biopython. 2318s Preparing to unpack .../067-python3-biopython_1.83+dfsg1-3_arm64.deb ... 2318s Unpacking python3-biopython (1.83+dfsg1-3) ... 2319s Selecting previously unselected package libjs-jquery. 2322s Preparing to unpack .../068-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 2322s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 2323s Selecting previously unselected package libjs-jquery-ui. 2326s Preparing to unpack .../069-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 2326s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 2328s Selecting previously unselected package fonts-lyx. 2332s Preparing to unpack .../070-fonts-lyx_2.4.0-1_all.deb ... 2332s Unpacking fonts-lyx (2.4.0-1) ... 2333s Selecting previously unselected package python-matplotlib-data. 2336s Preparing to unpack .../071-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 2336s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 2337s Selecting previously unselected package python3-dateutil. 2339s Preparing to unpack .../072-python3-dateutil_2.9.0-2_all.deb ... 2339s Unpacking python3-dateutil (2.9.0-2) ... 2339s Selecting previously unselected package python3-contourpy. 2341s Preparing to unpack .../073-python3-contourpy_1.0.7-3_arm64.deb ... 2341s Unpacking python3-contourpy (1.0.7-3) ... 2341s Selecting previously unselected package python3-cycler. 2344s Preparing to unpack .../074-python3-cycler_0.12.1-1_all.deb ... 2344s Unpacking python3-cycler (0.12.1-1) ... 2345s Selecting previously unselected package python3-brotli. 2348s Preparing to unpack .../075-python3-brotli_1.1.0-2build2_arm64.deb ... 2348s Unpacking python3-brotli (1.1.0-2build2) ... 2349s Selecting previously unselected package python3-decorator. 2353s Preparing to unpack .../076-python3-decorator_5.1.1-5_all.deb ... 2353s Unpacking python3-decorator (5.1.1-5) ... 2353s Selecting previously unselected package liblbfgsb0:arm64. 2359s Preparing to unpack .../077-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 2360s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 2362s Selecting previously unselected package python3-scipy. 2366s Preparing to unpack .../078-python3-scipy_1.12.0-2_arm64.deb ... 2366s Unpacking python3-scipy (1.12.0-2) ... 2370s Selecting previously unselected package python3-ufolib2. 2375s Preparing to unpack .../079-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 2375s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 2376s Selecting previously unselected package python3-mpmath. 2381s Preparing to unpack .../080-python3-mpmath_1.3.0-1_all.deb ... 2381s Unpacking python3-mpmath (1.3.0-1) ... 2382s Selecting previously unselected package python3-sympy. 2386s Preparing to unpack .../081-python3-sympy_1.12-8_all.deb ... 2386s Unpacking python3-sympy (1.12-8) ... 2389s Selecting previously unselected package python3-appdirs. 2394s Preparing to unpack .../082-python3-appdirs_1.4.4-4_all.deb ... 2394s Unpacking python3-appdirs (1.4.4-4) ... 2395s Selecting previously unselected package python3-fs. 2401s Preparing to unpack .../083-python3-fs_2.4.16-4_all.deb ... 2401s Unpacking python3-fs (2.4.16-4) ... 2402s Selecting previously unselected package libxslt1.1:arm64. 2408s Preparing to unpack .../084-libxslt1.1_1.1.39-0exp1build1_arm64.deb ... 2408s Unpacking libxslt1.1:arm64 (1.1.39-0exp1build1) ... 2409s Selecting previously unselected package python3-lxml:arm64. 2415s Preparing to unpack .../085-python3-lxml_5.2.1-1_arm64.deb ... 2415s Unpacking python3-lxml:arm64 (5.2.1-1) ... 2416s Selecting previously unselected package python3-lz4. 2422s Preparing to unpack .../086-python3-lz4_4.0.2+dfsg-1build4_arm64.deb ... 2422s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 2423s Selecting previously unselected package python3-unicodedata2. 2428s Preparing to unpack .../087-python3-unicodedata2_15.1.0+ds-1build1_arm64.deb ... 2428s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 2428s Selecting previously unselected package unicode-data. 2435s Preparing to unpack .../088-unicode-data_15.1.0-1_all.deb ... 2435s Unpacking unicode-data (15.1.0-1) ... 2436s Selecting previously unselected package python3-fonttools. 2439s Preparing to unpack .../089-python3-fonttools_4.46.0-1build2_arm64.deb ... 2439s Unpacking python3-fonttools (4.46.0-1build2) ... 2441s Selecting previously unselected package python3-kiwisolver. 2444s Preparing to unpack .../090-python3-kiwisolver_1.4.5-1_arm64.deb ... 2444s Unpacking python3-kiwisolver (1.4.5-1) ... 2445s Selecting previously unselected package python3-packaging. 2450s Preparing to unpack .../091-python3-packaging_24.0-1_all.deb ... 2450s Unpacking python3-packaging (24.0-1) ... 2450s Selecting previously unselected package libqhull-r8.0:arm64. 2455s Preparing to unpack .../092-libqhull-r8.0_2020.2-6build1_arm64.deb ... 2455s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 2456s Selecting previously unselected package python3-matplotlib. 2460s Preparing to unpack .../093-python3-matplotlib_3.6.3-2ubuntu1_arm64.deb ... 2460s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 2462s Selecting previously unselected package python3-pandas-lib:arm64. 2470s Preparing to unpack .../094-python3-pandas-lib_2.1.4+dfsg-8_arm64.deb ... 2470s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 2471s Selecting previously unselected package python3-pandas. 2475s Preparing to unpack .../095-python3-pandas_2.1.4+dfsg-8_all.deb ... 2475s Unpacking python3-pandas (2.1.4+dfsg-8) ... 2479s Selecting previously unselected package python3-joblib. 2485s Preparing to unpack .../096-python3-joblib_1.3.2-2_all.deb ... 2485s Unpacking python3-joblib (1.3.2-2) ... 2485s Selecting previously unselected package python3-networkx. 2489s Preparing to unpack .../097-python3-networkx_3.2.1-4ubuntu1_all.deb ... 2489s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 2492s Selecting previously unselected package python3-pomegranate. 2496s Preparing to unpack .../098-python3-pomegranate_0.14.8-6_arm64.deb ... 2496s Unpacking python3-pomegranate (0.14.8-6) ... 2497s Selecting previously unselected package python3-zipp. 2502s Preparing to unpack .../099-python3-zipp_3.19.2-2_all.deb ... 2502s Unpacking python3-zipp (3.19.2-2) ... 2502s Selecting previously unselected package python3-importlib-metadata. 2505s Preparing to unpack .../100-python3-importlib-metadata_7.1.0-1_all.deb ... 2505s Unpacking python3-importlib-metadata (7.1.0-1) ... 2506s Selecting previously unselected package python3-pyfaidx. 2512s Preparing to unpack .../101-python3-pyfaidx_0.8.1.1-2_all.deb ... 2512s Unpacking python3-pyfaidx (0.8.1.1-2) ... 2512s Selecting previously unselected package libhtscodecs2:arm64. 2518s Preparing to unpack .../102-libhtscodecs2_1.6.0-1build1_arm64.deb ... 2518s Unpacking libhtscodecs2:arm64 (1.6.0-1build1) ... 2518s Selecting previously unselected package libhts3t64:arm64. 2523s Preparing to unpack .../103-libhts3t64_1.20+ds-1_arm64.deb ... 2523s Unpacking libhts3t64:arm64 (1.20+ds-1) ... 2524s Selecting previously unselected package python3-pysam. 2530s Preparing to unpack .../104-python3-pysam_0.22.1+ds-2_arm64.deb ... 2530s Unpacking python3-pysam (0.22.1+ds-2) ... 2534s Selecting previously unselected package python3-threadpoolctl. 2538s Preparing to unpack .../105-python3-threadpoolctl_3.1.0-1_all.deb ... 2538s Unpacking python3-threadpoolctl (3.1.0-1) ... 2538s Selecting previously unselected package python3-sklearn-lib:arm64. 2541s Preparing to unpack .../106-python3-sklearn-lib_1.4.2+dfsg-1_arm64.deb ... 2541s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-1) ... 2542s Selecting previously unselected package python3-sklearn. 2544s Preparing to unpack .../107-python3-sklearn_1.4.2+dfsg-1_all.deb ... 2544s Unpacking python3-sklearn (1.4.2+dfsg-1) ... 2545s Selecting previously unselected package zip. 2547s Preparing to unpack .../108-zip_3.0-13build1_arm64.deb ... 2547s Unpacking zip (3.0-13build1) ... 2547s Selecting previously unselected package unzip. 2550s Preparing to unpack .../109-unzip_6.0-28ubuntu5_arm64.deb ... 2550s Unpacking unzip (6.0-28ubuntu5) ... 2550s Selecting previously unselected package libpaper1:arm64. 2553s Preparing to unpack .../110-libpaper1_1.1.29build1_arm64.deb ... 2553s Unpacking libpaper1:arm64 (1.1.29build1) ... 2554s Selecting previously unselected package libpaper-utils. 2557s Preparing to unpack .../111-libpaper-utils_1.1.29build1_arm64.deb ... 2557s Unpacking libpaper-utils (1.1.29build1) ... 2558s Selecting previously unselected package xdg-utils. 2562s Preparing to unpack .../112-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 2562s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 2563s Selecting previously unselected package fontconfig. 2570s Preparing to unpack .../113-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 2570s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 2571s Selecting previously unselected package libthai-data. 2577s Preparing to unpack .../114-libthai-data_0.1.29-2build1_all.deb ... 2577s Unpacking libthai-data (0.1.29-2build1) ... 2577s Selecting previously unselected package libdatrie1:arm64. 2582s Preparing to unpack .../115-libdatrie1_0.2.13-3build1_arm64.deb ... 2582s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 2583s Selecting previously unselected package libthai0:arm64. 2586s Preparing to unpack .../116-libthai0_0.1.29-2build1_arm64.deb ... 2586s Unpacking libthai0:arm64 (0.1.29-2build1) ... 2586s Selecting previously unselected package libpango-1.0-0:arm64. 2590s Preparing to unpack .../117-libpango-1.0-0_1.54.0+ds-1_arm64.deb ... 2590s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-1) ... 2591s Selecting previously unselected package libpangoft2-1.0-0:arm64. 2597s Preparing to unpack .../118-libpangoft2-1.0-0_1.54.0+ds-1_arm64.deb ... 2597s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ... 2597s Selecting previously unselected package libpangocairo-1.0-0:arm64. 2601s Preparing to unpack .../119-libpangocairo-1.0-0_1.54.0+ds-1_arm64.deb ... 2601s Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ... 2601s Selecting previously unselected package libice6:arm64. 2602s Preparing to unpack .../120-libice6_2%3a1.0.10-1build3_arm64.deb ... 2602s Unpacking libice6:arm64 (2:1.0.10-1build3) ... 2603s Selecting previously unselected package libsm6:arm64. 2603s Preparing to unpack .../121-libsm6_2%3a1.2.3-1build3_arm64.deb ... 2603s Unpacking libsm6:arm64 (2:1.2.3-1build3) ... 2603s Selecting previously unselected package libxt6t64:arm64. 2605s Preparing to unpack .../122-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 2605s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 2605s Selecting previously unselected package r-base-core. 2607s Preparing to unpack .../123-r-base-core_4.4.1-1_arm64.deb ... 2608s Unpacking r-base-core (4.4.1-1) ... 2609s Selecting previously unselected package r-bioc-biocgenerics. 2611s Preparing to unpack .../124-r-bioc-biocgenerics_0.48.1-2_all.deb ... 2611s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 2612s Selecting previously unselected package r-bioc-dnacopy. 2617s Preparing to unpack .../125-r-bioc-dnacopy_1.76.0-1_arm64.deb ... 2617s Unpacking r-bioc-dnacopy (1.76.0-1) ... 2618s Selecting previously unselected package cnvkit. 2622s Preparing to unpack .../126-cnvkit_0.9.10-2_all.deb ... 2622s Unpacking cnvkit (0.9.10-2) ... 2624s Selecting previously unselected package python3-xopen. 2627s Preparing to unpack .../127-python3-xopen_1.7.0-2_all.deb ... 2627s Unpacking python3-xopen (1.7.0-2) ... 2627s Selecting previously unselected package python3-dnaio. 2631s Preparing to unpack .../128-python3-dnaio_1.2.0-2build1_arm64.deb ... 2631s Unpacking python3-dnaio (1.2.0-2build1) ... 2632s Selecting previously unselected package python3-cutadapt. 2636s Preparing to unpack .../129-python3-cutadapt_4.7-2_arm64.deb ... 2636s Unpacking python3-cutadapt (4.7-2) ... 2636s Selecting previously unselected package cutadapt. 2641s Preparing to unpack .../130-cutadapt_4.7-2_all.deb ... 2641s Unpacking cutadapt (4.7-2) ... 2642s Selecting previously unselected package diamond-aligner. 2647s Preparing to unpack .../131-diamond-aligner_2.1.9-1_arm64.deb ... 2647s Unpacking diamond-aligner (2.1.9-1) ... 2648s Selecting previously unselected package emboss-data. 2652s Preparing to unpack .../132-emboss-data_6.6.0+dfsg-12ubuntu2_all.deb ... 2652s Unpacking emboss-data (6.6.0+dfsg-12ubuntu2) ... 2656s Selecting previously unselected package emboss-test. 2660s Preparing to unpack .../133-emboss-test_6.6.0+dfsg-12ubuntu2_all.deb ... 2660s Unpacking emboss-test (6.6.0+dfsg-12ubuntu2) ... 2661s Selecting previously unselected package fonts-font-awesome. 2666s Preparing to unpack .../134-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 2666s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 2667s Selecting previously unselected package fonts-glyphicons-halflings. 2669s Preparing to unpack .../135-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 2669s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 2670s Selecting previously unselected package fonts-mathjax. 2674s Preparing to unpack .../136-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 2674s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 2675s Selecting previously unselected package libgd-perl. 2678s Preparing to unpack .../137-libgd-perl_2.78-1build3_arm64.deb ... 2678s Unpacking libgd-perl (2.78-1build3) ... 2678s Selecting previously unselected package libdevel-symdump-perl. 2681s Preparing to unpack .../138-libdevel-symdump-perl_2.18-5_all.deb ... 2681s Unpacking libdevel-symdump-perl (2.18-5) ... 2681s Selecting previously unselected package liburi-perl. 2685s Preparing to unpack .../139-liburi-perl_5.28-1_all.deb ... 2685s Unpacking liburi-perl (5.28-1) ... 2686s Selecting previously unselected package libencode-locale-perl. 2691s Preparing to unpack .../140-libencode-locale-perl_1.05-3_all.deb ... 2691s Unpacking libencode-locale-perl (1.05-3) ... 2691s Selecting previously unselected package libtimedate-perl. 2696s Preparing to unpack .../141-libtimedate-perl_2.3300-2_all.deb ... 2696s Unpacking libtimedate-perl (2.3300-2) ... 2697s Selecting previously unselected package libhttp-date-perl. 2701s Preparing to unpack .../142-libhttp-date-perl_6.06-1_all.deb ... 2701s Unpacking libhttp-date-perl (6.06-1) ... 2701s Selecting previously unselected package libfile-listing-perl. 2706s Preparing to unpack .../143-libfile-listing-perl_6.16-1_all.deb ... 2706s Unpacking libfile-listing-perl (6.16-1) ... 2706s Selecting previously unselected package libhtml-tagset-perl. 2712s Preparing to unpack .../144-libhtml-tagset-perl_3.24-1_all.deb ... 2712s Unpacking libhtml-tagset-perl (3.24-1) ... 2712s Selecting previously unselected package libhtml-parser-perl:arm64. 2718s Preparing to unpack .../145-libhtml-parser-perl_3.82-1_arm64.deb ... 2718s Unpacking libhtml-parser-perl:arm64 (3.82-1) ... 2718s Selecting previously unselected package libhtml-tree-perl. 2722s Preparing to unpack .../146-libhtml-tree-perl_5.07-3_all.deb ... 2722s Unpacking libhtml-tree-perl (5.07-3) ... 2723s Selecting previously unselected package libclone-perl:arm64. 2726s Preparing to unpack .../147-libclone-perl_0.46-1build3_arm64.deb ... 2726s Unpacking libclone-perl:arm64 (0.46-1build3) ... 2726s Selecting previously unselected package libio-html-perl. 2730s Preparing to unpack .../148-libio-html-perl_1.004-3_all.deb ... 2730s Unpacking libio-html-perl (1.004-3) ... 2730s Selecting previously unselected package liblwp-mediatypes-perl. 2736s Preparing to unpack .../149-liblwp-mediatypes-perl_6.04-2_all.deb ... 2736s Unpacking liblwp-mediatypes-perl (6.04-2) ... 2737s Selecting previously unselected package libhttp-message-perl. 2743s Preparing to unpack .../150-libhttp-message-perl_6.45-1ubuntu1_all.deb ... 2743s Unpacking libhttp-message-perl (6.45-1ubuntu1) ... 2744s Selecting previously unselected package libhttp-cookies-perl. 2750s Preparing to unpack .../151-libhttp-cookies-perl_6.11-1_all.deb ... 2750s Unpacking libhttp-cookies-perl (6.11-1) ... 2750s Selecting previously unselected package libhttp-negotiate-perl. 2759s Preparing to unpack .../152-libhttp-negotiate-perl_6.01-2_all.deb ... 2759s Unpacking libhttp-negotiate-perl (6.01-2) ... 2765s Selecting previously unselected package perl-openssl-defaults:arm64. 2768s Preparing to unpack .../153-perl-openssl-defaults_7build3_arm64.deb ... 2768s Unpacking perl-openssl-defaults:arm64 (7build3) ... 2769s Selecting previously unselected package libnet-ssleay-perl:arm64. 2772s Preparing to unpack .../154-libnet-ssleay-perl_1.94-1build4_arm64.deb ... 2773s Unpacking libnet-ssleay-perl:arm64 (1.94-1build4) ... 2773s Selecting previously unselected package libio-socket-ssl-perl. 2777s Preparing to unpack .../155-libio-socket-ssl-perl_2.085-1_all.deb ... 2777s Unpacking libio-socket-ssl-perl (2.085-1) ... 2777s Selecting previously unselected package libnet-http-perl. 2783s Preparing to unpack .../156-libnet-http-perl_6.23-1_all.deb ... 2783s Unpacking libnet-http-perl (6.23-1) ... 2784s Selecting previously unselected package liblwp-protocol-https-perl. 2787s Preparing to unpack .../157-liblwp-protocol-https-perl_6.14-1_all.deb ... 2787s Unpacking liblwp-protocol-https-perl (6.14-1) ... 2787s Selecting previously unselected package libtry-tiny-perl. 2788s Preparing to unpack .../158-libtry-tiny-perl_0.31-2_all.deb ... 2788s Unpacking libtry-tiny-perl (0.31-2) ... 2788s Selecting previously unselected package libwww-robotrules-perl. 2789s Preparing to unpack .../159-libwww-robotrules-perl_6.02-1_all.deb ... 2789s Unpacking libwww-robotrules-perl (6.02-1) ... 2789s Selecting previously unselected package libwww-perl. 2795s Preparing to unpack .../160-libwww-perl_6.77-1_all.deb ... 2795s Unpacking libwww-perl (6.77-1) ... 2796s Selecting previously unselected package libapache2-mod-perl2. 2802s Preparing to unpack .../161-libapache2-mod-perl2_2.0.13-1build5_arm64.deb ... 2802s Unpacking libapache2-mod-perl2 (2.0.13-1build5) ... 2804s Selecting previously unselected package libdbi-perl:arm64. 2809s Preparing to unpack .../162-libdbi-perl_1.643-4build3_arm64.deb ... 2809s Unpacking libdbi-perl:arm64 (1.643-4build3) ... 2810s Selecting previously unselected package libapache-dbi-perl. 2813s Preparing to unpack .../163-libapache-dbi-perl_1.12-3_all.deb ... 2813s Unpacking libapache-dbi-perl (1.12-3) ... 2813s Selecting previously unselected package libbio-db-biofetch-perl. 2817s Preparing to unpack .../164-libbio-db-biofetch-perl_1.7.3-4_all.deb ... 2817s Unpacking libbio-db-biofetch-perl (1.7.3-4) ... 2817s Selecting previously unselected package libcgi-pm-perl. 2817s Preparing to unpack .../165-libcgi-pm-perl_4.65-1_all.deb ... 2817s Unpacking libcgi-pm-perl (4.65-1) ... 2818s Selecting previously unselected package libbio-db-gff-perl. 2818s Preparing to unpack .../166-libbio-db-gff-perl_1.7.4-1_all.deb ... 2818s Unpacking libbio-db-gff-perl (1.7.4-1) ... 2818s Selecting previously unselected package libpq5:arm64. 2819s Preparing to unpack .../167-libpq5_16.3-1_arm64.deb ... 2819s Unpacking libpq5:arm64 (16.3-1) ... 2820s Selecting previously unselected package libdbd-pg-perl. 2823s Preparing to unpack .../168-libdbd-pg-perl_3.18.0-1build3_arm64.deb ... 2824s Unpacking libdbd-pg-perl (3.18.0-1build3) ... 2824s Selecting previously unselected package libdbd-sqlite3-perl:arm64. 2831s Preparing to unpack .../169-libdbd-sqlite3-perl_1.74-1build3_arm64.deb ... 2831s Unpacking libdbd-sqlite3-perl:arm64 (1.74-1build3) ... 2832s Selecting previously unselected package libbio-db-seqfeature-perl. 2838s Preparing to unpack .../170-libbio-db-seqfeature-perl_1.7.4-2_all.deb ... 2838s Unpacking libbio-db-seqfeature-perl (1.7.4-2) ... 2839s Selecting previously unselected package libbio-graphics-perl. 2844s Preparing to unpack .../171-libbio-graphics-perl_2.40-6_all.deb ... 2844s Unpacking libbio-graphics-perl (2.40-6) ... 2844s Selecting previously unselected package libbio-coordinate-perl. 2845s Preparing to unpack .../172-libbio-coordinate-perl_1.7.1-4_all.deb ... 2845s Unpacking libbio-coordinate-perl (1.7.1-4) ... 2845s Selecting previously unselected package libcgi-session-perl. 2847s Preparing to unpack .../173-libcgi-session-perl_4.48-4_all.deb ... 2847s Unpacking libcgi-session-perl (4.48-4) ... 2847s Selecting previously unselected package libjson-perl. 2852s Preparing to unpack .../174-libjson-perl_4.10000-1_all.deb ... 2852s Unpacking libjson-perl (4.10000-1) ... 2852s Selecting previously unselected package libexporter-tiny-perl. 2856s Preparing to unpack .../175-libexporter-tiny-perl_1.006002-1_all.deb ... 2856s Unpacking libexporter-tiny-perl (1.006002-1) ... 2857s Selecting previously unselected package liblist-moreutils-xs-perl. 2863s Preparing to unpack .../176-liblist-moreutils-xs-perl_0.430-4_arm64.deb ... 2863s Unpacking liblist-moreutils-xs-perl (0.430-4) ... 2863s Selecting previously unselected package liblist-moreutils-perl. 2866s Preparing to unpack .../177-liblist-moreutils-perl_0.430-2_all.deb ... 2866s Unpacking liblist-moreutils-perl (0.430-2) ... 2866s Selecting previously unselected package libstatistics-descriptive-perl. 2872s Preparing to unpack .../178-libstatistics-descriptive-perl_3.0801-1_all.deb ... 2872s Unpacking libstatistics-descriptive-perl (3.0801-1) ... 2873s Selecting previously unselected package libhttp-daemon-perl. 2878s Preparing to unpack .../179-libhttp-daemon-perl_6.16-1_all.deb ... 2878s Unpacking libhttp-daemon-perl (6.16-1) ... 2878s Selecting previously unselected package libterm-readkey-perl. 2882s Preparing to unpack .../180-libterm-readkey-perl_2.38-2build4_arm64.deb ... 2882s Unpacking libterm-readkey-perl (2.38-2build4) ... 2882s Selecting previously unselected package sqlite3. 2885s Preparing to unpack .../181-sqlite3_3.46.0-1_arm64.deb ... 2885s Unpacking sqlite3 (3.46.0-1) ... 2886s Selecting previously unselected package libjs-prototype. 2890s Preparing to unpack .../182-libjs-prototype_1.7.3-1_all.deb ... 2890s Unpacking libjs-prototype (1.7.3-1) ... 2891s Selecting previously unselected package libjs-scriptaculous. 2894s Preparing to unpack .../183-libjs-scriptaculous_1.9.0-3_all.deb ... 2894s Unpacking libjs-scriptaculous (1.9.0-3) ... 2895s Selecting previously unselected package libanyevent-perl. 2898s Preparing to unpack .../184-libanyevent-perl_7.170-2build6_arm64.deb ... 2899s Unpacking libanyevent-perl (7.170-2build6) ... 2900s Selecting previously unselected package libanyevent-cachedns-perl. 2901s Preparing to unpack .../185-libanyevent-cachedns-perl_0.08-3_all.deb ... 2901s Unpacking libanyevent-cachedns-perl (0.08-3) ... 2901s Selecting previously unselected package libcommon-sense-perl:arm64. 2901s Preparing to unpack .../186-libcommon-sense-perl_3.75-3build3_arm64.deb ... 2901s Unpacking libcommon-sense-perl:arm64 (3.75-3build3) ... 2903s Selecting previously unselected package libanyevent-http-perl. 2906s Preparing to unpack .../187-libanyevent-http-perl_2.25-2_all.deb ... 2906s Unpacking libanyevent-http-perl (2.25-2) ... 2906s Selecting previously unselected package libstring-approx-perl. 2909s Preparing to unpack .../188-libstring-approx-perl_3.28-2build4_arm64.deb ... 2909s Unpacking libstring-approx-perl (3.28-2build4) ... 2910s Selecting previously unselected package libxml-namespacesupport-perl. 2914s Preparing to unpack .../189-libxml-namespacesupport-perl_1.12-2_all.deb ... 2914s Unpacking libxml-namespacesupport-perl (1.12-2) ... 2915s Selecting previously unselected package libxml-sax-base-perl. 2919s Preparing to unpack .../190-libxml-sax-base-perl_1.09-3_all.deb ... 2919s Unpacking libxml-sax-base-perl (1.09-3) ... 2920s Selecting previously unselected package libxml-sax-perl. 2925s Preparing to unpack .../191-libxml-sax-perl_1.02+dfsg-3_all.deb ... 2925s Unpacking libxml-sax-perl (1.02+dfsg-3) ... 2925s Selecting previously unselected package libxml-libxml-perl. 2929s Preparing to unpack .../192-libxml-libxml-perl_2.0207+dfsg+really+2.0134-2_arm64.deb ... 2929s Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ... 2930s Selecting previously unselected package libxml-simple-perl. 2932s Preparing to unpack .../193-libxml-simple-perl_2.25-2_all.deb ... 2932s Unpacking libxml-simple-perl (2.25-2) ... 2933s Selecting previously unselected package libvm-ec2-perl. 2936s Preparing to unpack .../194-libvm-ec2-perl_1.28-4_all.deb ... 2936s Unpacking libvm-ec2-perl (1.28-4) ... 2937s Selecting previously unselected package gbrowse. 2940s Preparing to unpack .../195-gbrowse_2.56+dfsg-12build3_all.deb ... 2940s Unpacking gbrowse (2.56+dfsg-12build3) ... 2941s Selecting previously unselected package gff2aplot. 2945s Preparing to unpack .../196-gff2aplot_2.0-15_arm64.deb ... 2945s Unpacking gff2aplot (2.0-15) ... 2945s Selecting previously unselected package gff2ps. 2951s Preparing to unpack .../197-gff2ps_0.98l-6_all.deb ... 2951s Unpacking gff2ps (0.98l-6) ... 2951s Selecting previously unselected package libgclib3t64:arm64. 2956s Preparing to unpack .../198-libgclib3t64_0.12.7+ds-5ubuntu3_arm64.deb ... 2957s Unpacking libgclib3t64:arm64 (0.12.7+ds-5ubuntu3) ... 2957s Selecting previously unselected package gffread. 2960s Preparing to unpack .../199-gffread_0.12.7-5_arm64.deb ... 2960s Unpacking gffread (0.12.7-5) ... 2960s Selecting previously unselected package htslib-test. 2961s Preparing to unpack .../200-htslib-test_1.20+ds-1_all.deb ... 2961s Unpacking htslib-test (1.20+ds-1) ... 2961s Selecting previously unselected package javascript-common. 2965s Preparing to unpack .../201-javascript-common_11+nmu1_all.deb ... 2967s Unpacking javascript-common (11+nmu1) ... 2968s Selecting previously unselected package libasan8:arm64. 2972s Preparing to unpack .../202-libasan8_14.1.0-1ubuntu1_arm64.deb ... 2972s Unpacking libasan8:arm64 (14.1.0-1ubuntu1) ... 2972s Selecting previously unselected package libatomic1:arm64. 2976s Preparing to unpack .../203-libatomic1_14.1.0-1ubuntu1_arm64.deb ... 2976s Unpacking libatomic1:arm64 (14.1.0-1ubuntu1) ... 2976s Selecting previously unselected package libitm1:arm64. 2977s Preparing to unpack .../204-libitm1_14.1.0-1ubuntu1_arm64.deb ... 2977s Unpacking libitm1:arm64 (14.1.0-1ubuntu1) ... 2977s Selecting previously unselected package liblsan0:arm64. 2977s Preparing to unpack .../205-liblsan0_14.1.0-1ubuntu1_arm64.deb ... 2977s Unpacking liblsan0:arm64 (14.1.0-1ubuntu1) ... 2977s Selecting previously unselected package libtsan2:arm64. 2978s Preparing to unpack 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.../211-libboost1.83-dev_1.83.0-3ubuntu1_arm64.deb ... 2992s Unpacking libboost1.83-dev:arm64 (1.83.0-3ubuntu1) ... 2997s Selecting previously unselected package libboost-dev:arm64. 3002s Preparing to unpack .../212-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 3002s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 3002s Selecting previously unselected package libjs-bootstrap. 3004s Preparing to unpack .../213-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 3004s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 3005s Selecting previously unselected package libjs-popper.js. 3008s Preparing to unpack .../214-libjs-popper.js_1.16.1+ds-6_all.deb ... 3008s Unpacking libjs-popper.js (1.16.1+ds-6) ... 3008s Selecting previously unselected package libjs-bootstrap4. 3013s Preparing to unpack .../215-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 3013s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 3014s Selecting previously unselected package libjs-d3. 3015s Preparing to unpack .../216-libjs-d3_3.5.17-4_all.deb ... 3015s Unpacking libjs-d3 (3.5.17-4) ... 3016s Selecting previously unselected package libjs-es5-shim. 3020s Preparing to unpack .../217-libjs-es5-shim_4.6.7-2_all.deb ... 3020s Unpacking libjs-es5-shim (4.6.7-2) ... 3020s Selecting previously unselected package libjs-highlight.js. 3023s Preparing to unpack .../218-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 3023s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 3023s Selecting previously unselected package libjs-jquery-datatables. 3025s Preparing to unpack .../219-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 3025s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 3026s Selecting previously unselected package libjs-sifter.js. 3028s Preparing to unpack .../220-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 3028s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 3028s Selecting previously unselected package libjs-microplugin.js. 3031s Preparing to unpack .../221-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 3031s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 3031s Selecting previously unselected package libjs-jquery-selectize.js. 3034s Preparing to unpack .../222-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 3034s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 3035s Selecting previously unselected package libjs-json. 3039s Preparing to unpack .../223-libjs-json_0~20221030+~1.0.8-1_all.deb ... 3039s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 3039s Selecting previously unselected package libjs-prettify. 3041s Preparing to unpack .../224-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 3041s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 3042s Selecting previously unselected package liblua5.1-0:arm64. 3043s Preparing to unpack .../225-liblua5.1-0_5.1.5-9build2_arm64.deb ... 3043s Unpacking liblua5.1-0:arm64 (5.1.5-9build2) ... 3043s Selecting previously unselected package libmbedcrypto7t64:arm64. 3043s Preparing to unpack .../226-libmbedcrypto7t64_2.28.8-1_arm64.deb ... 3043s Unpacking libmbedcrypto7t64:arm64 (2.28.8-1) ... 3043s Selecting previously unselected package libmbedx509-1t64:arm64. 3044s Preparing to unpack .../227-libmbedx509-1t64_2.28.8-1_arm64.deb ... 3044s Unpacking libmbedx509-1t64:arm64 (2.28.8-1) ... 3044s Selecting previously unselected package libmbedtls14t64:arm64. 3045s Preparing to unpack .../228-libmbedtls14t64_2.28.8-1_arm64.deb ... 3045s Unpacking libmbedtls14t64:arm64 (2.28.8-1) ... 3045s Selecting previously unselected package libtre5:arm64. 3047s Preparing to unpack .../229-libtre5_0.8.0-7_arm64.deb ... 3047s Unpacking libtre5:arm64 (0.8.0-7) ... 3047s Selecting previously unselected package ncbi-data. 3048s Preparing to unpack .../230-ncbi-data_6.1.20170106+dfsg2-2_all.deb ... 3048s Unpacking ncbi-data (6.1.20170106+dfsg2-2) ... 3049s Selecting previously unselected package ncbi-blast+. 3050s Preparing to unpack .../231-ncbi-blast+_2.12.0+ds-4build2_arm64.deb ... 3050s Unpacking ncbi-blast+ (2.12.0+ds-4build2) ... 3050s Selecting previously unselected package node-bootstrap-sass. 3051s Preparing to unpack .../232-node-bootstrap-sass_3.4.3-2_all.deb ... 3051s Unpacking node-bootstrap-sass (3.4.3-2) ... 3051s Selecting previously unselected package node-html5shiv. 3052s Preparing to unpack .../233-node-html5shiv_3.7.3+dfsg-5_all.deb ... 3052s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 3052s Selecting previously unselected package node-normalize.css. 3054s Preparing to unpack .../234-node-normalize.css_8.0.1-5_all.deb ... 3054s Unpacking node-normalize.css (8.0.1-5) ... 3054s Selecting previously unselected package bowtie2. 3055s Preparing to unpack .../235-bowtie2_2.5.3-1_arm64.deb ... 3055s Unpacking bowtie2 (2.5.3-1) ... 3056s Selecting previously unselected package samtools. 3056s Preparing to unpack .../236-samtools_1.20-3_arm64.deb ... 3056s Unpacking samtools (1.20-3) ... 3057s Selecting previously unselected package optimir. 3057s Preparing to unpack .../237-optimir_1.2-1_all.deb ... 3057s Unpacking optimir (1.2-1) ... 3057s Selecting previously unselected package pandoc-data. 3057s Preparing to unpack .../238-pandoc-data_3.1.3-2build2_all.deb ... 3057s Unpacking pandoc-data (3.1.3-2build2) ... 3057s Selecting previously unselected package pandoc. 3057s Preparing to unpack .../239-pandoc_3.1.3+ds-3build1_arm64.deb ... 3057s Unpacking pandoc (3.1.3+ds-3build1) ... 3058s Selecting previously unselected package proteinortho. 3058s Preparing to unpack .../240-proteinortho_6.3.1+dfsg-1_arm64.deb ... 3058s Unpacking proteinortho (6.3.1+dfsg-1) ... 3058s Selecting previously unselected package python3-argcomplete. 3058s Preparing to unpack .../241-python3-argcomplete_3.4.0-1_all.deb ... 3058s Unpacking python3-argcomplete (3.4.0-1) ... 3058s Selecting previously unselected package python3-argh. 3058s Preparing to unpack .../242-python3-argh_0.31.2-1_all.deb ... 3058s Unpacking python3-argh (0.31.2-1) ... 3059s Selecting previously unselected package python3-simplejson. 3059s Preparing to unpack .../243-python3-simplejson_3.19.2-1build2_arm64.deb ... 3059s Unpacking python3-simplejson (3.19.2-1build2) ... 3059s Selecting previously unselected package python3-gffutils. 3059s Preparing to unpack .../244-python3-gffutils_0.13-1_all.deb ... 3059s Unpacking python3-gffutils (0.13-1) ... 3059s Selecting previously unselected package python3-pybedtools. 3059s Preparing to unpack .../245-python3-pybedtools_0.10.0-1_arm64.deb ... 3059s Unpacking python3-pybedtools (0.10.0-1) ... 3059s Selecting previously unselected package r-bioc-biobase. 3059s Preparing to unpack .../246-r-bioc-biobase_2.62.0-1_arm64.deb ... 3059s Unpacking r-bioc-biobase (2.62.0-1) ... 3059s Selecting previously unselected package r-bioc-s4vectors. 3059s Preparing to unpack .../247-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 3059s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 3060s Selecting previously unselected package r-bioc-iranges. 3060s Preparing to unpack .../248-r-bioc-iranges_2.36.0-1_arm64.deb ... 3060s Unpacking r-bioc-iranges (2.36.0-1) ... 3060s Selecting previously unselected package r-cran-dbi. 3061s Preparing to unpack .../249-r-cran-dbi_1.2.3-1_all.deb ... 3061s Unpacking r-cran-dbi (1.2.3-1) ... 3061s Selecting previously unselected package r-cran-bit. 3063s Preparing to unpack .../250-r-cran-bit_4.0.5-1_arm64.deb ... 3063s Unpacking r-cran-bit (4.0.5-1) ... 3063s Selecting previously unselected package r-cran-bit64. 3064s Preparing to unpack .../251-r-cran-bit64_4.0.5-1_arm64.deb ... 3064s Unpacking r-cran-bit64 (4.0.5-1) ... 3065s Selecting previously unselected package r-cran-rlang. 3066s Preparing to unpack .../252-r-cran-rlang_1.1.4-1_arm64.deb ... 3066s Unpacking r-cran-rlang (1.1.4-1) ... 3066s Selecting previously unselected package r-cran-cli. 3068s Preparing to unpack .../253-r-cran-cli_3.6.2-1_arm64.deb ... 3068s Unpacking r-cran-cli (3.6.2-1) ... 3068s Selecting previously unselected package r-cran-glue. 3069s Preparing to unpack .../254-r-cran-glue_1.7.0-1_arm64.deb ... 3069s Unpacking r-cran-glue (1.7.0-1) ... 3069s Selecting previously unselected package r-cran-lifecycle. 3069s Preparing to unpack .../255-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 3069s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 3069s Selecting previously unselected package r-cran-vctrs. 3070s Preparing to unpack .../256-r-cran-vctrs_0.6.5-1_arm64.deb ... 3070s Unpacking r-cran-vctrs (0.6.5-1) ... 3070s Selecting previously unselected package r-cran-blob. 3070s Preparing to unpack .../257-r-cran-blob_1.2.4-1_all.deb ... 3070s Unpacking r-cran-blob (1.2.4-1) ... 3070s Selecting previously unselected package r-cran-fastmap. 3070s Preparing to unpack .../258-r-cran-fastmap_1.1.1-1_arm64.deb ... 3070s Unpacking r-cran-fastmap (1.1.1-1) ... 3070s Selecting previously unselected package r-cran-cachem. 3071s Preparing to unpack .../259-r-cran-cachem_1.0.8-1_arm64.deb ... 3071s Unpacking r-cran-cachem (1.0.8-1) ... 3072s Selecting previously unselected package r-cran-memoise. 3072s Preparing to unpack .../260-r-cran-memoise_2.0.1-1_all.deb ... 3072s Unpacking r-cran-memoise (2.0.1-1) ... 3072s Selecting previously unselected package r-cran-pkgconfig. 3073s Preparing to unpack .../261-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 3073s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 3073s Selecting previously unselected package r-cran-plogr. 3073s Preparing to unpack .../262-r-cran-plogr_0.2.0-3build1_all.deb ... 3073s Unpacking r-cran-plogr (0.2.0-3build1) ... 3073s Selecting previously unselected package r-cran-cpp11. 3073s Preparing to unpack .../263-r-cran-cpp11_0.4.7-1_all.deb ... 3073s Unpacking r-cran-cpp11 (0.4.7-1) ... 3073s Selecting previously unselected package r-cran-rsqlite. 3073s Preparing to unpack .../264-r-cran-rsqlite_2.3.7-1_arm64.deb ... 3073s Unpacking r-cran-rsqlite (2.3.7-1) ... 3073s Selecting previously unselected package r-cran-curl. 3074s Preparing to unpack .../265-r-cran-curl_5.2.1+dfsg-1_arm64.deb ... 3074s Unpacking r-cran-curl (5.2.1+dfsg-1) ... 3074s Selecting previously unselected package r-cran-jsonlite. 3074s Preparing to unpack .../266-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 3074s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 3074s Selecting previously unselected package r-cran-mime. 3074s Preparing to unpack .../267-r-cran-mime_0.12-2_arm64.deb ... 3074s Unpacking r-cran-mime (0.12-2) ... 3074s Selecting previously unselected package r-cran-sys. 3074s Preparing to unpack .../268-r-cran-sys_3.4.2-1_arm64.deb ... 3074s Unpacking r-cran-sys (3.4.2-1) ... 3074s Selecting previously unselected package r-cran-askpass. 3074s Preparing to unpack .../269-r-cran-askpass_1.2.0-1_arm64.deb ... 3074s Unpacking r-cran-askpass (1.2.0-1) ... 3074s Selecting previously unselected package r-cran-openssl. 3074s Preparing to unpack .../270-r-cran-openssl_2.1.1+dfsg-2build2_arm64.deb ... 3074s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ... 3074s Selecting previously unselected package r-cran-r6. 3074s Preparing to unpack .../271-r-cran-r6_2.5.1-1_all.deb ... 3074s Unpacking r-cran-r6 (2.5.1-1) ... 3074s Selecting previously unselected package r-cran-httr. 3074s Preparing to unpack .../272-r-cran-httr_1.4.7+dfsg-1_all.deb ... 3074s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 3074s Selecting previously unselected package r-cran-png. 3074s Preparing to unpack .../273-r-cran-png_0.1-8-1build2_arm64.deb ... 3074s Unpacking r-cran-png (0.1-8-1build2) ... 3074s Selecting previously unselected package zlib1g-dev:arm64. 3075s Preparing to unpack .../274-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ... 3075s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 3075s Selecting previously unselected package r-bioc-zlibbioc. 3075s Preparing to unpack .../275-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 3075s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 3075s Selecting previously unselected package r-bioc-xvector. 3076s Preparing to unpack .../276-r-bioc-xvector_0.42.0-1_arm64.deb ... 3076s Unpacking r-bioc-xvector (0.42.0-1) ... 3076s Selecting previously unselected package r-cran-bitops. 3077s Preparing to unpack .../277-r-cran-bitops_1.0-7-1_arm64.deb ... 3077s Unpacking r-cran-bitops (1.0-7-1) ... 3077s Selecting previously unselected package r-cran-rcurl. 3078s Preparing to unpack .../278-r-cran-rcurl_1.98-1.14+dfsg-1build2_arm64.deb ... 3078s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 3078s Selecting previously unselected package r-bioc-genomeinfodbdata. 3078s Preparing to unpack .../279-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 3078s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 3078s Selecting previously unselected package r-bioc-genomeinfodb. 3078s Preparing to unpack .../280-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 3078s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 3079s Selecting previously unselected package r-cran-crayon. 3080s Preparing to unpack .../281-r-cran-crayon_1.5.2-1_all.deb ... 3080s Unpacking r-cran-crayon (1.5.2-1) ... 3080s Selecting previously unselected package r-bioc-biostrings. 3083s Preparing to unpack .../282-r-bioc-biostrings_2.70.3+dfsg-1_arm64.deb ... 3083s Unpacking r-bioc-biostrings (2.70.3+dfsg-1) ... 3083s Selecting previously unselected package r-bioc-keggrest. 3086s Preparing to unpack .../283-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 3086s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 3086s Selecting previously unselected package r-bioc-annotationdbi. 3087s Preparing to unpack .../284-r-bioc-annotationdbi_1.64.1-1_all.deb ... 3087s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 3087s Selecting previously unselected package r-bioc-genomicranges. 3088s Preparing to unpack .../285-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 3088s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 3088s Selecting previously unselected package r-cran-lazyeval. 3088s Preparing to unpack .../286-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 3088s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 3088s Selecting previously unselected package r-bioc-annotationfilter. 3089s Preparing to unpack .../287-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 3089s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 3089s Selecting previously unselected package r-cran-generics. 3090s Preparing to unpack .../288-r-cran-generics_0.1.3-1_all.deb ... 3090s Unpacking r-cran-generics (0.1.3-1) ... 3090s Selecting previously unselected package r-cran-magrittr. 3090s Preparing to unpack .../289-r-cran-magrittr_2.0.3-1_arm64.deb ... 3090s Unpacking r-cran-magrittr (2.0.3-1) ... 3090s Selecting previously unselected package r-cran-fansi. 3090s Preparing to unpack .../290-r-cran-fansi_1.0.5-1_arm64.deb ... 3090s Unpacking r-cran-fansi (1.0.5-1) ... 3090s Selecting previously unselected package r-cran-utf8. 3090s Preparing to unpack .../291-r-cran-utf8_1.2.4-1_arm64.deb ... 3090s Unpacking r-cran-utf8 (1.2.4-1) ... 3090s Selecting previously unselected package r-cran-pillar. 3090s Preparing to unpack .../292-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 3090s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 3090s Selecting previously unselected package r-cran-tibble. 3090s Preparing to unpack .../293-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 3090s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 3090s Selecting previously unselected package r-cran-withr. 3091s Preparing to unpack .../294-r-cran-withr_2.5.0-1_all.deb ... 3091s Unpacking r-cran-withr (2.5.0-1) ... 3091s Selecting previously unselected package r-cran-tidyselect. 3091s Preparing to unpack .../295-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 3091s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 3091s Selecting previously unselected package r-cran-dplyr. 3092s Preparing to unpack .../296-r-cran-dplyr_1.1.4-1_arm64.deb ... 3092s Unpacking r-cran-dplyr (1.1.4-1) ... 3092s Selecting previously unselected package r-cran-purrr. 3094s Preparing to unpack .../297-r-cran-purrr_1.0.2-1_arm64.deb ... 3094s Unpacking r-cran-purrr (1.0.2-1) ... 3094s Selecting previously unselected package r-cran-stringi. 3094s Preparing to unpack .../298-r-cran-stringi_1.8.3-1_arm64.deb ... 3094s Unpacking r-cran-stringi (1.8.3-1) ... 3094s Selecting previously unselected package r-cran-stringr. 3094s Preparing to unpack .../299-r-cran-stringr_1.5.1-1_all.deb ... 3094s Unpacking r-cran-stringr (1.5.1-1) ... 3094s Selecting previously unselected package r-cran-tidyr. 3094s Preparing to unpack .../300-r-cran-tidyr_1.3.1-1_arm64.deb ... 3094s Unpacking r-cran-tidyr (1.3.1-1) ... 3094s Selecting previously unselected package r-cran-dbplyr. 3094s Preparing to unpack .../301-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 3094s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 3094s Selecting previously unselected package r-cran-filelock. 3094s Preparing to unpack .../302-r-cran-filelock_1.0.3-1_arm64.deb ... 3094s Unpacking r-cran-filelock (1.0.3-1) ... 3094s Selecting previously unselected package r-bioc-biocfilecache. 3094s Preparing to unpack .../303-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 3094s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 3094s Selecting previously unselected package r-bioc-biocio. 3094s Preparing to unpack .../304-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 3094s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 3095s Selecting previously unselected package r-cran-formatr. 3095s Preparing to unpack .../305-r-cran-formatr_1.14-2_all.deb ... 3095s Unpacking r-cran-formatr (1.14-2) ... 3095s Selecting previously unselected package r-cran-lambda.r. 3095s Preparing to unpack .../306-r-cran-lambda.r_1.2.4-2build1_all.deb ... 3095s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 3095s Selecting previously unselected package r-cran-futile.options. 3095s Preparing to unpack .../307-r-cran-futile.options_1.0.1-3build1_all.deb ... 3095s Unpacking r-cran-futile.options (1.0.1-3build1) ... 3095s Selecting previously unselected package r-cran-futile.logger. 3095s Preparing to unpack .../308-r-cran-futile.logger_1.4.3-4build1_all.deb ... 3095s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 3095s Selecting previously unselected package r-cran-snow. 3096s Preparing to unpack .../309-r-cran-snow_1%3a0.4.4-2_all.deb ... 3096s Unpacking r-cran-snow (1:0.4.4-2) ... 3096s Selecting previously unselected package r-cran-codetools. 3096s Preparing to unpack .../310-r-cran-codetools_0.2-20-1_all.deb ... 3096s Unpacking r-cran-codetools (0.2-20-1) ... 3096s Selecting previously unselected package r-cran-bh. 3096s Preparing to unpack .../311-r-cran-bh_1.84.0-1_all.deb ... 3096s Unpacking r-cran-bh (1.84.0-1) ... 3096s Selecting previously unselected package r-bioc-biocparallel. 3096s Preparing to unpack .../312-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 3096s Unpacking r-bioc-biocparallel (1.36.0-1) ... 3096s Selecting previously unselected package r-cran-xml. 3096s Preparing to unpack .../313-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 3096s Unpacking r-cran-xml (3.99-0.16.1-1) ... 3096s Selecting previously unselected package r-cran-hms. 3096s Preparing to unpack .../314-r-cran-hms_1.1.3-1_all.deb ... 3096s Unpacking r-cran-hms (1.1.3-1) ... 3096s Selecting previously unselected package r-cran-prettyunits. 3097s Preparing to unpack .../315-r-cran-prettyunits_1.2.0-1_all.deb ... 3097s Unpacking r-cran-prettyunits (1.2.0-1) ... 3097s Selecting previously unselected package r-cran-progress. 3097s Preparing to unpack .../316-r-cran-progress_1.2.3-1_all.deb ... 3097s Unpacking r-cran-progress (1.2.3-1) ... 3097s Selecting previously unselected package r-cran-digest. 3097s Preparing to unpack .../317-r-cran-digest_0.6.35-1_arm64.deb ... 3097s Unpacking r-cran-digest (0.6.35-1) ... 3097s Selecting previously unselected package r-cran-rappdirs. 3097s Preparing to unpack .../318-r-cran-rappdirs_0.3.3-1_arm64.deb ... 3097s Unpacking r-cran-rappdirs (0.3.3-1) ... 3097s Selecting previously unselected package r-cran-xml2. 3097s Preparing to unpack .../319-r-cran-xml2_1.3.6-1_arm64.deb ... 3097s Unpacking r-cran-xml2 (1.3.6-1) ... 3097s Selecting previously unselected package r-bioc-biomart. 3097s Preparing to unpack .../320-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 3097s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 3097s Selecting previously unselected package r-cran-farver. 3097s Preparing to unpack .../321-r-cran-farver_2.1.2-1_arm64.deb ... 3097s Unpacking r-cran-farver (2.1.2-1) ... 3097s Selecting previously unselected package r-cran-labeling. 3097s Preparing to unpack .../322-r-cran-labeling_0.4.3-1_all.deb ... 3097s Unpacking r-cran-labeling (0.4.3-1) ... 3097s Selecting previously unselected package r-cran-colorspace. 3097s Preparing to unpack .../323-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 3097s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 3097s Selecting previously unselected package r-cran-munsell. 3097s Preparing to unpack .../324-r-cran-munsell_0.5.1-1_all.deb ... 3097s Unpacking r-cran-munsell (0.5.1-1) ... 3097s Selecting previously unselected package r-cran-rcolorbrewer. 3098s Preparing to unpack .../325-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 3098s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 3098s Selecting previously unselected package r-cran-viridislite. 3098s Preparing to unpack .../326-r-cran-viridislite_0.4.2-2_all.deb ... 3098s Unpacking r-cran-viridislite (0.4.2-2) ... 3098s Selecting previously unselected package r-cran-scales. 3099s Preparing to unpack .../327-r-cran-scales_1.3.0-1_all.deb ... 3099s Unpacking r-cran-scales (1.3.0-1) ... 3099s Selecting previously unselected package r-cran-gtable. 3099s Preparing to unpack .../328-r-cran-gtable_0.3.5+dfsg-1_all.deb ... 3099s Unpacking r-cran-gtable (0.3.5+dfsg-1) ... 3099s Selecting previously unselected package r-cran-isoband. 3099s Preparing to unpack .../329-r-cran-isoband_0.2.7-1_arm64.deb ... 3099s Unpacking r-cran-isoband (0.2.7-1) ... 3099s Selecting previously unselected package r-cran-mass. 3099s Preparing to unpack .../330-r-cran-mass_7.3-61-1_arm64.deb ... 3099s Unpacking r-cran-mass (7.3-61-1) ... 3099s Selecting previously unselected package r-cran-lattice. 3099s Preparing to unpack .../331-r-cran-lattice_0.22-6-1_arm64.deb ... 3099s Unpacking r-cran-lattice (0.22-6-1) ... 3099s Selecting previously unselected package r-cran-nlme. 3099s Preparing to unpack .../332-r-cran-nlme_3.1.165-1_arm64.deb ... 3099s Unpacking r-cran-nlme (3.1.165-1) ... 3099s Selecting previously unselected package r-cran-matrix. 3100s Preparing to unpack .../333-r-cran-matrix_1.7-0-3_arm64.deb ... 3100s Unpacking r-cran-matrix (1.7-0-3) ... 3100s Selecting previously unselected package r-cran-mgcv. 3100s Preparing to unpack .../334-r-cran-mgcv_1.9-1-1_arm64.deb ... 3100s Unpacking r-cran-mgcv (1.9-1-1) ... 3100s Selecting previously unselected package r-cran-ggplot2. 3100s Preparing to unpack .../335-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 3100s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 3100s Selecting previously unselected package r-cran-cluster. 3101s Preparing to unpack .../336-r-cran-cluster_2.1.6-1build1_arm64.deb ... 3101s Unpacking r-cran-cluster (2.1.6-1build1) ... 3101s Selecting previously unselected package r-cran-survival. 3101s Preparing to unpack .../337-r-cran-survival_3.7-0-1_arm64.deb ... 3101s Unpacking r-cran-survival (3.7-0-1) ... 3102s Selecting previously unselected package r-cran-rpart. 3102s Preparing to unpack .../338-r-cran-rpart_4.1.23-1build1_arm64.deb ... 3102s Unpacking r-cran-rpart (4.1.23-1build1) ... 3102s Selecting previously unselected package r-cran-nnet. 3102s Preparing to unpack .../339-r-cran-nnet_7.3-19-2build1_arm64.deb ... 3102s Unpacking r-cran-nnet (7.3-19-2build1) ... 3102s Selecting previously unselected package r-cran-foreign. 3103s Preparing to unpack .../340-r-cran-foreign_0.8.86-1build1_arm64.deb ... 3103s Unpacking r-cran-foreign (0.8.86-1build1) ... 3103s Selecting previously unselected package r-cran-gridextra. 3103s Preparing to unpack .../341-r-cran-gridextra_2.3-3build1_all.deb ... 3103s Unpacking r-cran-gridextra (2.3-3build1) ... 3103s Selecting previously unselected package r-cran-data.table. 3103s Preparing to unpack .../342-r-cran-data.table_1.15.4+dfsg-2.2_arm64.deb ... 3103s Unpacking r-cran-data.table (1.15.4+dfsg-2.2) ... 3103s Selecting previously unselected package r-cran-evaluate. 3103s Preparing to unpack .../343-r-cran-evaluate_0.23-1_all.deb ... 3103s Unpacking r-cran-evaluate (0.23-1) ... 3104s Selecting previously unselected package r-cran-xfun. 3104s Preparing to unpack .../344-r-cran-xfun_0.44+dfsg-1_arm64.deb ... 3104s Unpacking r-cran-xfun (0.44+dfsg-1) ... 3104s Selecting previously unselected package r-cran-highr. 3104s Preparing to unpack .../345-r-cran-highr_0.11+dfsg-1_all.deb ... 3104s Unpacking r-cran-highr (0.11+dfsg-1) ... 3104s Selecting previously unselected package r-cran-yaml. 3104s Preparing to unpack .../346-r-cran-yaml_2.3.8-2_arm64.deb ... 3104s Unpacking r-cran-yaml (2.3.8-2) ... 3104s Selecting previously unselected package libjs-mathjax. 3105s Preparing to unpack .../347-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 3105s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 3106s Selecting previously unselected package r-cran-knitr. 3106s Preparing to unpack .../348-r-cran-knitr_1.46+dfsg-1_all.deb ... 3106s Unpacking r-cran-knitr (1.46+dfsg-1) ... 3106s Selecting previously unselected package r-cran-backports. 3106s Preparing to unpack .../349-r-cran-backports_1.4.1-1_arm64.deb ... 3106s Unpacking r-cran-backports (1.4.1-1) ... 3106s Selecting previously unselected package r-cran-checkmate. 3106s Preparing to unpack .../350-r-cran-checkmate_2.3.1-1_arm64.deb ... 3106s Unpacking r-cran-checkmate (2.3.1-1) ... 3106s Selecting previously unselected package r-cran-base64enc. 3107s Preparing to unpack .../351-r-cran-base64enc_0.1-3-3_arm64.deb ... 3107s Unpacking r-cran-base64enc (0.1-3-3) ... 3107s Selecting previously unselected package r-cran-htmltools. 3107s Preparing to unpack .../352-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 3107s Unpacking r-cran-htmltools (0.5.8.1-1) ... 3107s Selecting previously unselected package r-cran-jquerylib. 3107s Preparing to unpack .../353-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 3107s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 3107s Selecting previously unselected package r-cran-fs. 3108s Preparing to unpack .../354-r-cran-fs_1.6.3+dfsg-1build2_arm64.deb ... 3108s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ... 3108s Selecting previously unselected package r-cran-sass. 3109s Preparing to unpack .../355-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 3109s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 3109s Selecting previously unselected package r-cran-bslib. 3110s Preparing to unpack .../356-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 3110s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 3110s Selecting previously unselected package r-cran-fontawesome. 3110s Preparing to unpack .../357-r-cran-fontawesome_0.5.2-1_all.deb ... 3110s Unpacking r-cran-fontawesome (0.5.2-1) ... 3110s Selecting previously unselected package r-cran-tinytex. 3111s Preparing to unpack .../358-r-cran-tinytex_0.51-1_all.deb ... 3111s Unpacking r-cran-tinytex (0.51-1) ... 3111s Selecting previously unselected package libjs-modernizr. 3111s Preparing to unpack .../359-libjs-modernizr_3.13.0-0.1_all.deb ... 3111s Unpacking libjs-modernizr (3.13.0-0.1) ... 3112s Selecting previously unselected package r-cran-littler. 3112s Preparing to unpack .../360-r-cran-littler_0.3.20-1_arm64.deb ... 3112s Unpacking r-cran-littler (0.3.20-1) ... 3112s Selecting previously unselected package r-cran-pkgkitten. 3112s Preparing to unpack .../361-r-cran-pkgkitten_0.2.3-1_all.deb ... 3112s Unpacking r-cran-pkgkitten (0.2.3-1) ... 3112s Selecting previously unselected package r-cran-rcpp. 3112s Preparing to unpack .../362-r-cran-rcpp_1.0.12-1_arm64.deb ... 3112s Unpacking r-cran-rcpp (1.0.12-1) ... 3112s Selecting previously unselected package r-cran-later. 3112s Preparing to unpack .../363-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 3112s Unpacking r-cran-later (1.3.2+dfsg-1) ... 3112s Selecting previously unselected package r-cran-promises. 3112s Preparing to unpack .../364-r-cran-promises_1.3.0+dfsg-1_arm64.deb ... 3112s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 3112s Selecting previously unselected package r-cran-httpuv. 3112s Preparing to unpack .../365-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 3112s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 3112s Selecting previously unselected package r-cran-xtable. 3113s Preparing to unpack .../366-r-cran-xtable_1%3a1.8-4-2_all.deb ... 3113s Unpacking r-cran-xtable (1:1.8-4-2) ... 3113s Selecting previously unselected package r-cran-sourcetools. 3113s Preparing to unpack .../367-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 3113s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 3113s Selecting previously unselected package r-cran-commonmark. 3113s Preparing to unpack .../368-r-cran-commonmark_1.9.1-1_arm64.deb ... 3113s Unpacking r-cran-commonmark (1.9.1-1) ... 3113s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 3113s Preparing to unpack .../369-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 3113s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 3113s Selecting previously unselected package r-cran-shiny. 3114s Preparing to unpack .../370-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ... 3114s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ... 3114s Selecting previously unselected package r-cran-rmarkdown. 3114s Preparing to unpack .../371-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 3114s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 3114s Selecting previously unselected package r-cran-htmlwidgets. 3114s Preparing to unpack .../372-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 3114s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 3114s Selecting previously unselected package r-cran-rstudioapi. 3114s Preparing to unpack .../373-r-cran-rstudioapi_0.16.0-1_all.deb ... 3114s Unpacking r-cran-rstudioapi (0.16.0-1) ... 3114s Selecting previously unselected package r-cran-htmltable. 3114s Preparing to unpack .../374-r-cran-htmltable_2.4.2-1_all.deb ... 3114s Unpacking r-cran-htmltable (2.4.2-1) ... 3114s Selecting previously unselected package r-cran-viridis. 3114s Preparing to unpack .../375-r-cran-viridis_0.6.5-1_all.deb ... 3114s Unpacking r-cran-viridis (0.6.5-1) ... 3114s Selecting previously unselected package r-cran-formula. 3115s Preparing to unpack .../376-r-cran-formula_1.2-5-1_all.deb ... 3115s Unpacking r-cran-formula (1.2-5-1) ... 3115s Selecting previously unselected package r-cran-chron. 3116s Preparing to unpack .../377-r-cran-chron_2.3-61-2_arm64.deb ... 3116s Unpacking r-cran-chron (2.3-61-2) ... 3116s Selecting previously unselected package r-cran-jpeg. 3116s Preparing to unpack .../378-r-cran-jpeg_0.1-10-1_arm64.deb ... 3116s Unpacking r-cran-jpeg (0.1-10-1) ... 3116s Selecting previously unselected package r-cran-deldir. 3116s Preparing to unpack .../379-r-cran-deldir_2.0-4-1build1_arm64.deb ... 3116s Unpacking r-cran-deldir (2.0-4-1build1) ... 3116s Selecting previously unselected package r-cran-rcppeigen. 3116s Preparing to unpack .../380-r-cran-rcppeigen_0.3.4.0.0-1build1_arm64.deb ... 3116s Unpacking r-cran-rcppeigen (0.3.4.0.0-1build1) ... 3117s Selecting previously unselected package r-cran-interp. 3118s Preparing to unpack .../381-r-cran-interp_1.1-6-1_arm64.deb ... 3118s Unpacking r-cran-interp (1.1-6-1) ... 3118s Selecting previously unselected package r-cran-latticeextra. 3121s Preparing to unpack .../382-r-cran-latticeextra_0.6-30-1_all.deb ... 3121s Unpacking r-cran-latticeextra (0.6-30-1) ... 3121s Selecting previously unselected package r-cran-acepack. 3121s Preparing to unpack .../383-r-cran-acepack_1.4.2-1_arm64.deb ... 3121s Unpacking r-cran-acepack (1.4.2-1) ... 3121s Selecting previously unselected package r-cran-hmisc. 3121s Preparing to unpack .../384-r-cran-hmisc_5.1-3-1_arm64.deb ... 3121s Unpacking r-cran-hmisc (5.1-3-1) ... 3121s Selecting previously unselected package r-cran-dichromat. 3121s Preparing to unpack .../385-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 3121s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 3121s Selecting previously unselected package r-cran-matrixstats. 3122s Preparing to unpack .../386-r-cran-matrixstats_1.3.0-1_arm64.deb ... 3122s Unpacking r-cran-matrixstats (1.3.0-1) ... 3122s Selecting previously unselected package r-bioc-matrixgenerics. 3122s Preparing to unpack .../387-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 3122s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 3122s Selecting previously unselected package r-cran-abind. 3122s Preparing to unpack .../388-r-cran-abind_1.4-5-2_all.deb ... 3122s Unpacking r-cran-abind (1.4-5-2) ... 3122s Selecting previously unselected package r-bioc-s4arrays. 3122s Preparing to unpack .../389-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 3122s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 3122s Selecting previously unselected package r-bioc-sparsearray. 3122s Preparing to unpack .../390-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 3122s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 3123s Selecting previously unselected package r-bioc-delayedarray. 3123s Preparing to unpack .../391-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 3123s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 3123s Selecting previously unselected package r-bioc-summarizedexperiment. 3123s Preparing to unpack .../392-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 3123s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 3124s Selecting previously unselected package r-bioc-rhtslib. 3124s Preparing to unpack .../393-r-bioc-rhtslib_2.4.1+dfsg-3build2_arm64.deb ... 3124s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 3124s Selecting previously unselected package r-bioc-rsamtools. 3124s Preparing to unpack .../394-r-bioc-rsamtools_2.18.0+dfsg-1build2_arm64.deb ... 3124s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build2) ... 3124s Selecting previously unselected package r-bioc-genomicalignments. 3125s Preparing to unpack .../395-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 3125s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 3125s Selecting previously unselected package r-cran-rjson. 3125s Preparing to unpack .../396-r-cran-rjson_0.2.21-1_arm64.deb ... 3125s Unpacking r-cran-rjson (0.2.21-1) ... 3125s Selecting previously unselected package r-cran-restfulr. 3125s Preparing to unpack .../397-r-cran-restfulr_0.0.15-1_arm64.deb ... 3125s Unpacking r-cran-restfulr (0.0.15-1) ... 3125s Selecting previously unselected package r-bioc-rtracklayer. 3126s Preparing to unpack .../398-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 3126s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 3126s Selecting previously unselected package r-bioc-genomicfeatures. 3127s Preparing to unpack .../399-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... 3127s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 3127s Selecting previously unselected package r-bioc-bsgenome. 3129s Preparing to unpack .../400-r-bioc-bsgenome_1.70.2-1_all.deb ... 3129s Unpacking r-bioc-bsgenome (1.70.2-1) ... 3129s Selecting previously unselected package r-bioc-variantannotation. 3130s Preparing to unpack .../401-r-bioc-variantannotation_1.48.1-1build2_arm64.deb ... 3130s Unpacking r-bioc-variantannotation (1.48.1-1build2) ... 3130s Selecting previously unselected package r-bioc-protgenerics. 3130s Preparing to unpack .../402-r-bioc-protgenerics_1.34.0-1_all.deb ... 3130s Unpacking r-bioc-protgenerics (1.34.0-1) ... 3130s Selecting previously unselected package r-bioc-ensembldb. 3130s Preparing to unpack .../403-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 3130s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 3130s Selecting previously unselected package r-bioc-biovizbase. 3130s Preparing to unpack .../404-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 3130s Unpacking r-bioc-biovizbase (1.50.0-1) ... 3130s Selecting previously unselected package r-bioc-gviz. 3131s Preparing to unpack .../405-r-bioc-gviz_1.46.1+dfsg-1_all.deb ... 3131s Unpacking r-bioc-gviz (1.46.1+dfsg-1) ... 3131s Selecting previously unselected package trinityrnaseq-examples. 3131s Preparing to unpack .../406-trinityrnaseq-examples_2.15.1+dfsg-5build1_arm64.deb ... 3131s Unpacking trinityrnaseq-examples (2.15.1+dfsg-5build1) ... 3133s Selecting previously unselected package genometools-common. 3136s Preparing to unpack .../407-genometools-common_1.6.5+ds-2.2_all.deb ... 3136s Unpacking genometools-common (1.6.5+ds-2.2) ... 3137s Selecting previously unselected package seqan-apps. 3140s Preparing to unpack .../408-seqan-apps_2.4.0+dfsg-16_arm64.deb ... 3140s Unpacking seqan-apps (2.4.0+dfsg-16) ... 3141s Selecting previously unselected package autopkgtest-satdep. 3142s Preparing to unpack .../409-1-autopkgtest-satdep.deb ... 3142s Unpacking autopkgtest-satdep (0) ... 3142s Setting up libhtscodecs2:arm64 (1.6.0-1build1) ... 3142s Setting up libgclib3t64:arm64 (0.12.7+ds-5ubuntu3) ... 3142s Setting up libanyevent-perl (7.170-2build6) ... 3142s Setting up libjs-json (0~20221030+~1.0.8-1) ... 3142s Setting up javascript-common (11+nmu1) ... 3142s Package apache2 is not configured yet. Will defer actions by package javascript-common. 3142s Setting up libgraphite2-3:arm64 (1.3.14-2build1) ... 3142s Setting up liblcms2-2:arm64 (2.14-2build1) ... 3142s Setting up ncbi-data (6.1.20170106+dfsg2-2) ... 3142s Setting up libpixman-1-0:arm64 (0.42.2-1build1) ... 3142s Setting up libstring-approx-perl (3.28-2build4) ... 3142s Setting up python3-argh (0.31.2-1) ... 3143s Setting up libpaper1:arm64 (1.1.29build1) ... 3145s 3145s Creating config file /etc/papersize with new version 3146s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 3149s Regenerating fonts cache... done. 3149s Setting up gff2ps (0.98l-6) ... 3149s Setting up gffread (0.12.7-5) ... 3149s Setting up libtre5:arm64 (0.8.0-7) ... 3149s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 3149s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 3149s Setting up libmbedcrypto7t64:arm64 (2.28.8-1) ... 3149s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 3149s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 3149s Setting up libtest-deep-perl (1.204-1) ... 3149s Setting up python3-joblib (1.3.2-2) ... 3150s Setting up libjs-popper.js (1.16.1+ds-6) ... 3150s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 3150s Setting up libxcb-render0:arm64 (1.17.0-2) ... 3150s Setting up libclone-perl:arm64 (0.46-1build3) ... 3150s Setting up libalgorithm-diff-perl (1.201-1) ... 3150s Setting up htslib-test (1.20+ds-1) ... 3150s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 3150s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 3150s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 3150s Setting up fonts-lyx (2.4.0-1) ... 3150s Setting up libhtml-tagset-perl (3.24-1) ... 3150s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 3150s Setting up unzip (6.0-28ubuntu5) ... 3150s Setting up liblwp-mediatypes-perl (6.04-2) ... 3150s Setting up python3-threadpoolctl (3.1.0-1) ... 3151s Setting up x11-common (1:7.7+23ubuntu3) ... 3156s Setting up libtry-tiny-perl (0.31-2) ... 3156s Setting up node-html5shiv (3.7.3+dfsg-5) ... 3156s Setting up libpq5:arm64 (16.3-1) ... 3156s Setting up perl-openssl-defaults:arm64 (7build3) ... 3156s Setting up libcommon-sense-perl:arm64 (3.75-3build3) ... 3156s Setting up libxml-namespacesupport-perl (1.12-2) ... 3156s Setting up libanyevent-http-perl (2.25-2) ... 3156s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 3157s Setting up libencode-locale-perl (1.05-3) ... 3157s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 3157s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 3157s Setting up libpaper-utils (1.1.29build1) ... 3157s Setting up python3-zipp (3.19.2-2) ... 3157s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ... 3157s Setting up python3-freetype (2.4.0-2) ... 3158s Setting up emboss-data (6.6.0+dfsg-12ubuntu2) ... 3158s Setting up python3-networkx (3.2.1-4ubuntu1) ... 3161s Setting up libjs-modernizr (3.13.0-0.1) ... 3161s Setting up diamond-aligner (2.1.9-1) ... 3161s Setting up libcairo2:arm64 (1.18.0-3build1) ... 3161s Setting up bowtie2 (2.5.3-1) ... 3161s Setting up augustus-doc (3.5.0+dfsg-4build5) ... 3161s Setting up libjs-es5-shim (4.6.7-2) ... 3161s Setting up unicode-data (15.1.0-1) ... 3161s Setting up python3-simplejson (3.19.2-1build2) ... 3162s Setting up libgd-perl (2.78-1build3) ... 3162s Setting up libxml-sax-base-perl (1.09-3) ... 3162s Setting up libio-string-perl (1.08-4) ... 3162s Setting up python3-decorator (5.1.1-5) ... 3162s Setting up zip (3.0-13build1) ... 3162s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 3163s Setting up libblas3:arm64 (3.12.0-3build1) ... 3163s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 3163s Setting up libclass-data-inheritable-perl (0.08-3) ... 3163s Setting up python3-packaging (24.0-1) ... 3163s Setting up libtext-diff-perl (1.45-2) ... 3163s Setting up python3-brotli (1.1.0-2build2) ... 3164s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 3164s Setting up python3-cycler (0.12.1-1) ... 3164s Setting up libanyevent-cachedns-perl (0.08-3) ... 3164s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 3164s Setting up seqan-apps (2.4.0+dfsg-16) ... 3164s Setting up libjs-d3 (3.5.17-4) ... 3164s Setting up python3-kiwisolver (1.4.5-1) ... 3165s Setting up libatomic1:arm64 (14.1.0-1ubuntu1) ... 3165s Setting up libio-html-perl (1.004-3) ... 3165s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 3165s Setting up liblist-moreutils-xs-perl (0.430-4) ... 3165s Setting up emboss-test (6.6.0+dfsg-12ubuntu2) ... 3165s Setting up libjs-prototype (1.7.3-1) ... 3165s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ... 3165s Setting up libcapture-tiny-perl (0.48-2) ... 3165s Setting up libtimedate-perl (2.3300-2) ... 3165s Setting up libubsan1:arm64 (14.1.0-1ubuntu1) ... 3165s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 3165s Setting up libdata-stag-perl (0.14-3) ... 3165s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 3165s Setting up libhwasan0:arm64 (14.1.0-1ubuntu1) ... 3165s Setting up pigz (2.8-1) ... 3165s Setting up libasan8:arm64 (14.1.0-1ubuntu1) ... 3165s Setting up libapr1t64:arm64 (1.7.2-3.2) ... 3165s Setting up libjson-perl (4.10000-1) ... 3165s Setting up liblua5.1-0:arm64 (5.1.5-9build2) ... 3165s Setting up libxslt1.1:arm64 (1.1.39-0exp1build1) ... 3165s Setting up libhts3t64:arm64 (1.20+ds-1) ... 3165s Setting up libsub-uplevel-perl (0.2800-3) ... 3165s Setting up liblua5.4-0:arm64 (5.4.6-3build2) ... 3165s Setting up libopenjp2-7:arm64 (2.5.0-2build3) ... 3165s Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ... 3165s Setting up libthai-data (0.1.29-2build1) ... 3165s Setting up python3-dateutil (2.9.0-2) ... 3167s Setting up node-bootstrap-sass (3.4.3-2) ... 3167s Setting up sgml-base (1.31) ... 3168s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 3168s Setting up libdevel-stacktrace-perl (2.0500-1) ... 3168s Setting up apache2-data (2.4.59-2ubuntu2) ... 3168s Setting up libdevel-symdump-perl (2.18-5) ... 3168s Setting up libbio-perl-perl (1.7.8-1) ... 3168s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 3168s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 3168s Setting up pandoc-data (3.1.3-2build2) ... 3168s Setting up libtsan2:arm64 (14.1.0-1ubuntu1) ... 3168s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 3168s Setting up bedtools-test (2.31.1+dfsg-2) ... 3168s Setting up libexporter-tiny-perl (1.006002-1) ... 3168s Setting up libterm-readkey-perl (2.38-2build4) ... 3168s Setting up python3-mpmath (1.3.0-1) ... 3169s Setting up python3-argcomplete (3.4.0-1) ... 3171s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 3171s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 3171s Setting up gff2aplot (2.0-15) ... 3171s Setting up node-normalize.css (8.0.1-5) ... 3171s Setting up python3-appdirs (1.4.4-4) ... 3172s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 3172s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 3172s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 3172s Setting up liburi-perl (5.28-1) ... 3172s Setting up sqlite3 (3.46.0-1) ... 3172s Setting up libdbi-perl:arm64 (1.643-4build3) ... 3172s Setting up liblsan0:arm64 (14.1.0-1ubuntu1) ... 3172s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 3172s Setting up libitm1:arm64 (14.1.0-1ubuntu1) ... 3172s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 3172s Setting up libnet-ssleay-perl:arm64 (1.94-1build4) ... 3172s Setting up python3-sympy (1.12-8) ... 3179s Setting up libaprutil1t64:arm64 (1.6.3-2ubuntu1) ... 3179s Setting up libice6:arm64 (2:1.0.10-1build3) ... 3179s Setting up libhttp-date-perl (6.06-1) ... 3180s Setting up liblapack3:arm64 (3.12.0-3build1) ... 3180s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 3180s Setting up libxft2:arm64 (2.3.6-1build1) ... 3180s Setting up libmbedx509-1t64:arm64 (2.28.8-1) ... 3180s Setting up python3-pysam (0.22.1+ds-2) ... 3181s Setting up python3-cairo (1.26.0-1) ... 3181s Setting up libfile-listing-perl (6.16-1) ... 3181s Setting up python3-importlib-metadata (7.1.0-1) ... 3182s Setting up libjs-scriptaculous (1.9.0-3) ... 3182s Setting up liblist-moreutils-perl (0.430-2) ... 3182s Setting up libtest-warn-perl (0.37-2) ... 3182s Setting up libtk8.6:arm64 (8.6.14-1build1) ... 3182s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 3182s Setting up libtest-differences-perl (0.71-1) ... 3182s Setting up libnet-http-perl (6.23-1) ... 3182s Setting up libdbd-pg-perl (3.18.0-1build3) ... 3182s Setting up libexception-class-perl (1.45-1) ... 3182s Setting up libaprutil1-ldap:arm64 (1.6.3-2ubuntu1) ... 3182s Setting up xfonts-utils (1:7.7+6build3) ... 3182s Setting up libaprutil1-dbd-sqlite3:arm64 (1.6.3-2ubuntu1) ... 3182s Setting up libxml-sax-perl (1.02+dfsg-3) ... 3183s update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... 3183s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 3186s 3186s Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version 3186s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 3186s Setting up samtools (1.20-3) ... 3186s Setting up python3-fs (2.4.16-4) ... 3187s Setting up libthai0:arm64 (0.1.29-2build1) ... 3187s Setting up python3-xopen (1.7.0-2) ... 3189s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 3189s Setting up pandoc (3.1.3+ds-3build1) ... 3189s Setting up libtest-exception-perl (0.43-3) ... 3189s Setting up python3-rlpycairo (0.3.0-3) ... 3190s Setting up libraqm0:arm64 (0.10.1-1build1) ... 3190s Setting up python3-numpy (1:1.26.4+ds-10) ... 3193s Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ... 3193s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... 3197s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... 3197s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 3200s Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version 3201s Setting up libwww-robotrules-perl (6.02-1) ... 3201s Setting up libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ... 3201s Setting up libmbedtls14t64:arm64 (2.28.8-1) ... 3202s Setting up python3-lxml:arm64 (5.2.1-1) ... 3203s Setting up xml-core (0.19) ... 3204s Setting up libhtml-parser-perl:arm64 (3.82-1) ... 3204s Setting up python3-contourpy (1.0.7-3) ... 3205s Setting up libdbd-sqlite3-perl:arm64 (1.74-1build3) ... 3205s Setting up libsm6:arm64 (2:1.2.3-1build3) ... 3205s Setting up libio-socket-ssl-perl (2.085-1) ... 3205s Setting up libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ... 3205s Setting up python3-dnaio (1.2.0-2build1) ... 3206s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 3206s Setting up libhttp-message-perl (6.45-1ubuntu1) ... 3206s Setting up apache2-utils (2.4.59-2ubuntu2) ... 3207s Setting up python3-pyfaidx (0.8.1.1-2) ... 3208s Setting up libhttp-negotiate-perl (6.01-2) ... 3208s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 3208s Setting up python3-pybedtools (0.10.0-1) ... 3209s Setting up libboost1.83-dev:arm64 (1.83.0-3ubuntu1) ... 3209s Setting up libstatistics-descriptive-perl (3.0801-1) ... 3209s Setting up python3-scipy (1.12.0-2) ... 3214s Setting up libhttp-cookies-perl (6.11-1) ... 3214s Setting up libtest-most-perl (0.38-1) ... 3214s Setting up libhtml-tree-perl (5.07-3) ... 3214s Setting up blt (2.5.3+dfsg-7build1) ... 3214s Setting up python3-pomegranate (0.14.8-6) ... 3215s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 3215s Setting up libpango-1.0-0:arm64 (1.54.0+ds-1) ... 3215s Setting up libcgi-pm-perl (4.65-1) ... 3215s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-1) ... 3215s Setting up python3-tk:arm64 (3.12.3-0ubuntu1) ... 3216s Setting up fonts-urw-base35 (20200910-8) ... 3218s Setting up apache2-bin (2.4.59-2ubuntu2) ... 3218s Setting up ncbi-blast+ (2.12.0+ds-4build2) ... 3218s Setting up python3-pil:arm64 (10.3.0-2) ... 3220s Setting up python3-pandas (2.1.4+dfsg-8) ... 3227s Setting up python3-cutadapt (4.7-2) ... 3227s Setting up python3-pil.imagetk:arm64 (10.3.0-2) ... 3228s Setting up libcgi-session-perl (4.48-4) ... 3228s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 3228s Setting up python3-sklearn (1.4.2+dfsg-1) ... 3231s Setting up libxml-simple-perl (2.25-2) ... 3231s Setting up python3-reportlab (4.2.0-2) ... 3233s Setting up libhttp-daemon-perl (6.16-1) ... 3233s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 3233s Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ... 3233s Setting up proteinortho (6.3.1+dfsg-1) ... 3233s Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ... 3233s Setting up bioperl (1.7.8-1) ... 3233s Setting up cutadapt (4.7-2) ... 3233s Setting up apache2 (2.4.59-2ubuntu2) ... 3234s Enabling module mpm_event. 3236s Enabling module authz_core. 3236s Enabling module authz_host. 3237s Enabling module authn_core. 3237s Enabling module auth_basic. 3238s Enabling module access_compat. 3239s Enabling module authn_file. 3240s Enabling module authz_user. 3240s Enabling module alias. 3241s Enabling module dir. 3242s Enabling module autoindex. 3244s Enabling module env. 3245s Enabling module mime. 3246s Enabling module negotiation. 3246s Enabling module setenvif. 3247s Enabling module filter. 3248s Enabling module deflate. 3250s Enabling module status. 3251s Enabling module reqtimeout. 3252s Enabling conf charset. 3253s Enabling conf localized-error-pages. 3254s Enabling conf other-vhosts-access-log. 3254s Enabling conf security. 3255s Enabling conf serve-cgi-bin. 3256s Enabling site 000-default. 3257s info: Executing deferred 'a2enconf javascript-common' for package javascript-common 3258s Enabling conf javascript-common. 3265s Created symlink /etc/systemd/system/multi-user.target.wants/apache2.service → /usr/lib/systemd/system/apache2.service. 3272s Created symlink /etc/systemd/system/multi-user.target.wants/apache-htcacheclean.service → /usr/lib/systemd/system/apache-htcacheclean.service. 3280s Setting up libbio-coordinate-perl (1.7.1-4) ... 3280s Setting up r-base-core (4.4.1-1) ... 3281s 3281s Creating config file /etc/R/Renviron with new version 3282s Setting up r-cran-crayon (1.5.2-1) ... 3282s Setting up r-cran-labeling (0.4.3-1) ... 3282s Setting up r-cran-sourcetools (0.1.7-1-1) ... 3282s Setting up r-cran-futile.options (1.0.1-3build1) ... 3283s Setting up r-cran-lattice (0.22-6-1) ... 3283s Setting up r-cran-nlme (3.1.165-1) ... 3283s Setting up r-cran-farver (2.1.2-1) ... 3283s Setting up r-cran-formatr (1.14-2) ... 3283s Setting up r-cran-formula (1.2-5-1) ... 3283s Setting up r-cran-xml (3.99-0.16.1-1) ... 3283s Setting up trinityrnaseq-examples (2.15.1+dfsg-5build1) ... 3283s Setting up r-cran-viridislite (0.4.2-2) ... 3283s Setting up r-cran-cluster (2.1.6-1build1) ... 3283s Setting up genometools-common (1.6.5+ds-2.2) ... 3283s Setting up r-cran-nnet (7.3-19-2build1) ... 3283s Setting up r-cran-lazyeval (0.2.2-1build1) ... 3283s Setting up r-cran-commonmark (1.9.1-1) ... 3283s Setting up r-cran-r6 (2.5.1-1) ... 3283s Setting up r-cran-pkgkitten (0.2.3-1) ... 3283s Setting up r-cran-jpeg (0.1-10-1) ... 3283s Setting up r-cran-chron (2.3-61-2) ... 3283s Setting up r-cran-magrittr (2.0.3-1) ... 3283s Setting up r-cran-rappdirs (0.3.3-1) ... 3283s Setting up r-cran-filelock (1.0.3-1) ... 3283s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 3283s Setting up r-cran-littler (0.3.20-1) ... 3283s Setting up r-cran-bh (1.84.0-1) ... 3283s Setting up r-cran-fs (1.6.3+dfsg-1build2) ... 3283s Setting up r-cran-rcpp (1.0.12-1) ... 3283s Setting up r-cran-curl (5.2.1+dfsg-1) ... 3283s Setting up r-cran-codetools (0.2-20-1) ... 3283s Setting up r-bioc-biocgenerics (0.48.1-2) ... 3283s Setting up r-cran-rlang (1.1.4-1) ... 3283s Setting up r-cran-matrixstats (1.3.0-1) ... 3283s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 3283s Setting up r-cran-xfun (0.44+dfsg-1) ... 3283s Setting up r-cran-sys (3.4.2-1) ... 3283s Setting up r-cran-plogr (0.2.0-3build1) ... 3283s Setting up r-cran-withr (2.5.0-1) ... 3283s Setting up r-cran-backports (1.4.1-1) ... 3283s Setting up r-cran-mime (0.12-2) ... 3283s Setting up r-cran-generics (0.1.3-1) ... 3283s Setting up r-cran-base64enc (0.1-3-3) ... 3283s Setting up r-cran-abind (1.4-5-2) ... 3283s Setting up r-cran-digest (0.6.35-1) ... 3283s Setting up r-cran-yaml (2.3.8-2) ... 3283s Setting up r-cran-lambda.r (1.2.4-2build1) ... 3283s Setting up r-bioc-protgenerics (1.34.0-1) ... 3283s Setting up r-cran-evaluate (0.23-1) ... 3283s Setting up r-cran-dbi (1.2.3-1) ... 3283s Setting up r-cran-highr (0.11+dfsg-1) ... 3283s Setting up r-cran-prettyunits (1.2.0-1) ... 3283s Setting up r-cran-fansi (1.0.5-1) ... 3283s Setting up r-cran-mass (7.3-61-1) ... 3283s Setting up r-cran-checkmate (2.3.1-1) ... 3283s Setting up r-cran-acepack (1.4.2-1) ... 3283s Setting up r-cran-snow (1:0.4.4-2) ... 3283s Setting up r-cran-data.table (1.15.4+dfsg-2.2) ... 3283s Setting up r-cran-glue (1.7.0-1) ... 3283s Setting up r-cran-foreign (0.8.86-1build1) ... 3283s Setting up r-cran-bit (4.0.5-1) ... 3283s Setting up r-cran-xtable (1:1.8-4-2) ... 3283s Setting up r-cran-cli (3.6.2-1) ... 3283s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 3283s Setting up r-cran-bitops (1.0-7-1) ... 3283s Setting up r-cran-bit64 (4.0.5-1) ... 3283s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 3283s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 3283s Setting up r-cran-deldir (2.0-4-1build1) ... 3283s Setting up r-cran-askpass (1.2.0-1) ... 3283s Setting up r-cran-fastmap (1.1.1-1) ... 3283s Setting up r-cran-png (0.1-8-1build2) ... 3283s Setting up r-bioc-biobase (2.62.0-1) ... 3283s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 3283s Setting up r-cran-rstudioapi (0.16.0-1) ... 3283s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 3283s Setting up r-cran-utf8 (1.2.4-1) ... 3283s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 3283s Setting up r-cran-stringi (1.8.3-1) ... 3283s Setting up r-cran-cpp11 (0.4.7-1) ... 3283s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 3283s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 3283s Setting up r-cran-isoband (0.2.7-1) ... 3283s Setting up r-cran-futile.logger (1.4.3-4build1) ... 3283s Setting up r-cran-gtable (0.3.5+dfsg-1) ... 3283s Setting up r-cran-later (1.3.2+dfsg-1) ... 3283s Setting up r-cran-matrix (1.7-0-3) ... 3283s Setting up r-cran-htmltools (0.5.8.1-1) ... 3283s Setting up r-cran-tinytex (0.51-1) ... 3283s Setting up r-cran-knitr (1.46+dfsg-1) ... 3283s Setting up r-cran-mgcv (1.9-1-1) ... 3283s Setting up r-bioc-dnacopy (1.76.0-1) ... 3283s Setting up r-cran-cachem (1.0.8-1) ... 3283s Setting up r-cran-sass (0.4.9+dfsg-1) ... 3283s Setting up r-bioc-iranges (2.36.0-1) ... 3283s Setting up r-cran-rjson (0.2.21-1) ... 3283s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 3283s Setting up r-cran-restfulr (0.0.15-1) ... 3283s Setting up r-cran-vctrs (0.6.5-1) ... 3283s Setting up r-cran-rcppeigen (0.3.4.0.0-1build1) ... 3283s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 3283s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ... 3283s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 3283s Setting up r-cran-stringr (1.5.1-1) ... 3283s Setting up r-bioc-biocparallel (1.36.0-1) ... 3283s Setting up r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 3283s Setting up r-cran-xml2 (1.3.6-1) ... 3283s Setting up r-cran-munsell (0.5.1-1) ... 3283s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 3283s Setting up r-cran-fontawesome (0.5.2-1) ... 3283s Setting up r-cran-survival (3.7-0-1) ... 3283s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 3283s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 3283s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 3283s Setting up r-cran-interp (1.1-6-1) ... 3283s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 3283s Setting up r-cran-httr (1.4.7+dfsg-1) ... 3283s Setting up r-cran-gridextra (2.3-3build1) ... 3283s Setting up r-cran-hms (1.1.3-1) ... 3283s Setting up r-cran-scales (1.3.0-1) ... 3283s Setting up r-cran-memoise (2.0.1-1) ... 3283s Setting up r-cran-promises (1.3.0+dfsg-1) ... 3283s Setting up r-cran-purrr (1.0.2-1) ... 3283s Setting up r-cran-blob (1.2.4-1) ... 3283s Setting up r-bioc-xvector (0.42.0-1) ... 3283s Setting up r-cran-dplyr (1.1.4-1) ... 3283s Setting up r-cran-rsqlite (2.3.7-1) ... 3283s Setting up r-cran-progress (1.2.3-1) ... 3283s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 3283s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 3283s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 3283s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 3283s Setting up r-cran-rpart (4.1.23-1build1) ... 3283s Setting up r-bioc-biostrings (2.70.3+dfsg-1) ... 3283s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 3283s Setting up r-cran-latticeextra (0.6-30-1) ... 3283s Setting up r-cran-viridis (0.6.5-1) ... 3283s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 3283s Setting up r-cran-tidyr (1.3.1-1) ... 3283s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build2) ... 3283s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 3283s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 3283s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 3283s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 3283s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 3283s Setting up r-bioc-annotationdbi (1.64.1-1) ... 3283s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... 3283s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 3283s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 3283s Setting up r-bioc-genomicalignments (1.38.2-1) ... 3283s Setting up r-bioc-rtracklayer (1.62.0-1) ... 3283s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 3283s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 3283s Setting up r-bioc-bsgenome (1.70.2-1) ... 3283s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 3283s Setting up r-bioc-variantannotation (1.48.1-1build2) ... 3283s Setting up r-cran-htmltable (2.4.2-1) ... 3283s Setting up r-cran-hmisc (5.1-3-1) ... 3283s Setting up r-bioc-biovizbase (1.50.0-1) ... 3283s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 3283s Setting up liblwp-protocol-https-perl (6.14-1) ... 3283s Setting up libwww-perl (6.77-1) ... 3283s Setting up python3-fonttools (4.46.0-1build2) ... 3284s Setting up libapache2-mod-perl2 (2.0.13-1build5) ... 3286s apache2_invoke: Enable module perl 3293s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 3294s Setting up libbio-db-biofetch-perl (1.7.3-4) ... 3294s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 3297s Setting up libvm-ec2-perl (1.28-4) ... 3297s Setting up libapache-dbi-perl (1.12-3) ... 3297s Setting up libbio-db-gff-perl (1.7.4-1) ... 3297s Setting up libbio-db-seqfeature-perl (1.7.4-2) ... 3297s Setting up libbio-graphics-perl (2.40-6) ... 3297s Setting up gbrowse (2.56+dfsg-12build3) ... 3301s apache2_invoke: Enable configuration gbrowse 3302s Processing triggers for man-db (2.12.1-2) ... 3305s Processing triggers for install-info (7.1-3build2) ... 3306s Processing triggers for libc-bin (2.39-0ubuntu9) ... 3307s Processing triggers for ufw (0.36.2-6) ... 3308s Processing triggers for sgml-base (1.31) ... 3308s Setting up w3c-sgml-lib (1.3-3) ... 3416s Setting up python3-biopython (1.83+dfsg1-3) ... 3420s Setting up python3-gffutils (0.13-1) ... 3423s Setting up cnvkit (0.9.10-2) ... 3424s Setting up optimir (1.2-1) ... 3426s /usr/lib/python3/dist-packages/optimir/libs/get_counts.py:453: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? 3426s if prefix is '': 3426s Setting up autopkgtest-satdep (0) ... 3486s (Reading database ... 143840 files and directories currently installed.) 3486s Removing autopkgtest-satdep (0) ... 3490s autopkgtest [20:21:04]: test run-tests: [----------------------- 3497s /usr/share/doc/augustus/tutorial/data/hints.rnaseq.intron.gff: is okay. 3497s /usr/share/doc/augustus/tutorial/results/abinitio-browser.gff: is okay. 3497s /usr/share/doc/augustus/tutorial/results/augustus-ppx.gff: is okay. 3497s /usr/share/doc/augustus/tutorial/results/hints.est.gff: is okay. 3497s /usr/share/doc/augustus/tutorial/results/hints.gff: is okay. 3497s /usr/share/doc/augustus/tutorial/results/hints.rnaseq.ep.gff: is okay. 3498s /usr/share/doc/augustus/tutorial/results/output-abinitio.gff: is okay. 3498s /usr/share/doc/augustus/tutorial/results/output-browser.gff: is okay. 3498s /usr/share/doc/augustus/tutorial/results/output.gff: is okay. 3498s /usr/share/doc/augustus/tutorial/results/scipio.gff: is okay. 3500s /usr/share/bedtools/test/fisher/tumor.gff: is okay. 3500s /usr/share/bedtools/test/intersect/b.issue311.gff: is okay. 3500s /usr/share/bedtools/test/intersect/gdc.gff: is okay. 3500s /usr/share/bedtools/test/map/test.gff: is okay. 3500s /usr/share/bedtools/test/merge/a.gff: is okay. 3501s /usr/share/EMBOSS/data/Efeatures.gff2: is okay. 3501s /usr/share/EMBOSS/data/Efeatures.gff3: is okay. 3501s /usr/share/EMBOSS/data/Etags.gff2: is okay. 3501s /usr/share/EMBOSS/data/Etags.gff3: is okay. 3502s /usr/share/EMBOSS/test/data/bioperl.gff3: is okay. 3502s /usr/share/EMBOSS/test/data/eden1.gff3: is okay. 3502s /usr/share/EMBOSS/test/data/featexample1.gff3: is okay. 3502s /usr/share/EMBOSS/test/data/gmod-align.gff3: Warning: unexpected tab character in last column, line truncated: 3502s ctg123 est EST_match 1050 1500 . + . ID=Match1;Name=agt830.5;Target=agt830.5 1 451 3502s Warning: unexpected tab character in last column, line truncated: 3502s ctg123 est EST_match 3000 3202 . + . ID=Match1;Name=agt830.5;Target=agt830.5 452 654 3502s Warning: unexpected tab character in last column, line truncated: 3502s ctg123 est EST_match 5410 5500 . - . ID=Match2;Name=agt830.3;Target=agt830.3 505 595 3502s Warning: unexpected tab character in last column, line truncated: 3502s ctg123 est EST_match 7000 7503 . - . ID=Match2;Name=agt830.3;Target=agt830.3 1 504 3502s Warning: unexpected tab character in last column, line truncated: 3502s ctg123 est EST_match 1050 1500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 1 451 3502s Warning: unexpected tab character in last column, line truncated: 3502s ctg123 est EST_match 5000 5500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 452 952 3502s Warning: unexpected tab character in last column, line truncated: 3502s ctg123 est EST_match 7000 7300 . + . ID=Match3;Name=agt221.5;Target=agt221.5 953 1253 3502s is okay. 3502s /usr/share/EMBOSS/test/data/gmod-discontinuous.gff3: is okay. 3502s /usr/share/EMBOSS/test/data/gmod-eden1.gff3: Warning: unexpected tab character in last column, line truncated: 3502s ctg123 example gene 1050 9000 . + . ID=EDEN;Name=EDEN;Note=protein kinase 3502s is okay. 3502s /usr/share/EMBOSS/test/data/gmod-sonic1.gff3: is okay. 3502s /usr/share/EMBOSS/test/data/gmod-sonic2.gff3: is okay. 3502s /usr/share/EMBOSS/test/data/gmod-sonic3.gff3: is okay. 3502s /usr/share/EMBOSS/test/data/hba.gff: is okay. 3502s /usr/share/EMBOSS/test/data/noid.gff: is okay. 3502s /usr/share/EMBOSS/test/data/paamir.gff: is okay. 3502s /usr/share/EMBOSS/test/data/paamir.gff3: is okay. 3502s /usr/share/EMBOSS/test/data/seqexample.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_expression.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_extra.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_repeats.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_domains.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est.gff3: is okay. 3511s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3: is okay. 3512s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3: is okay. 3512s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3: is okay. 3512s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes_simple.gff3: is okay. 3512s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3: is okay. 3512s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.gff3: is okay. 3512s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.gff3: is okay. 3512s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3: is okay. 3512s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_remarks.gff3: is okay. 3513s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.gff3: is okay. 3514s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff: is okay. 3514s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff: is okay. 3515s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff: is okay. 3516s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff: is okay. 3516s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff: is okay. 3516s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff: is okay. 3516s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff: Warning: unexpected tab character in last column, line truncated: 3516s ctgA est HSP 7000 7300 . + . EST agt221.5 3516s Warning: unexpected tab character in last column, line truncated: 3516s ctgA est HSP 7000 7200 . + . EST agt767.5 3516s is okay. 3516s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff: is okay. 3516s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff: is okay. 3516s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff: is okay. 3517s /usr/share/genometools/gtdata/doc/csa_example_consensus_spliced_alignments.gff3: is okay. 3517s /usr/share/genometools/gtdata/doc/csa_example_spliced_alignments.gff3: is okay. 3517s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sgp1.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.tblastx.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/mhcregion/hs.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/mhcregion/mm.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs-mm.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.mm.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs-mm.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.mm.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs.gff: is okay. 3518s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs_utr.gff: is okay. 3519s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm.gff: is okay. 3519s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm_utr.gff: is okay. 3519s /usr/share/doc/gff2aplot/examples/wublast/taf6.hs.gene.gff: is okay. 3519s /usr/share/doc/gff2aplot/examples/wublast/taf6.mm.gene.gff: is okay. 3519s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.aplot.gff: is okay. 3519s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.full.gff: Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641"; Start 11597; End 12218; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641"; Start 7067; End 7448; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641"; Start 5482; End 6065; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641"; Start 11198; End 11485; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641"; Start 8002; End 8402; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641"; Start 8902; End 9636; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641"; Start 10806; End 11009; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641"; Start 6393; End 6618; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641"; Start 5138; End 5426; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641"; Start 7444; End 7714; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641"; Start 5378; End 5504; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641"; Start 11954; End 12278; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641"; Start 6827; End 6924; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641"; Start 1490; End 1610; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641"; Start 10064; End 10180; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641"; Start 3564; End 3694; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641"; Start 3724; End 3837; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641"; Start 3416; End 3528; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641"; Start 2801; End 2860; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641"; Start 10323; End 10493; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641"; Start 8752; End 8825; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641"; Start 2194; End 2253; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641"; Start 1390; End 1461; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641"; Start 6007; End 6180; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641"; Start 9981; End 10063; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641"; Start 8633; End 8708; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641"; Start 10246; End 10311; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641"; Start 10244; End 10543; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641"; Start 913; End 994; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641"; Start 929; End 1212; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641"; Start 6612; End 6673; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641"; Start 6314; End 6364; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641"; Start 1748; End 1853; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641"; Start 10512; End 10581; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641"; Start 4552; End 4647; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641"; Start 1283; End 1342; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641"; Start 3670; End 3715; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641"; Start 605; End 791; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641"; Start 8525; End 8585; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641"; Start 9592; End 9647; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641"; Start 8839; End 8979; Strand +; Frame .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641"; Start 1290; End 1523; Strand +; Frame .; 3519s is okay. 3519s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.gff: Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641" 11597 12218 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641" 7067 7448 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641" 5482 6065 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641" 11198 11485 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641" 8002 8402 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641" 8902 9636 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641" 10806 11009 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641" 6393 6618 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641" 5138 5426 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641" 7444 7714 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641" 5378 5504 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641" 11954 12278 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641" 6827 6924 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641" 1490 1610 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641" 10064 10180 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641" 3564 3694 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641" 3724 3837 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641" 3416 3528 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641" 2801 2860 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641" 10323 10493 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641" 8752 8825 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641" 2194 2253 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641" 1390 1461 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641" 6007 6180 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641" 9981 10063 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641" 8633 8708 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641" 10246 10311 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641" 10244 10543 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641" 913 994 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641" 929 1212 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641" 6612 6673 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641" 6314 6364 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641" 1748 1853 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641" 10512 10581 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641" 4552 4647 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641" 1283 1342 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641" 3670 3715 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641" 605 791 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641" 8525 8585 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641" 9592 9647 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641" 8839 8979 + .; 3519s Warning: unexpected tab character in last column, line truncated: 3519s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641" 1290 1523 + .; 3519s is okay. 3519s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff: is okay. 3520s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.gff: Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4867 5778 839 + . Target "NM_005641"; Start 11212; End 12162; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4874 5785 645 + . Target "NM_005641"; Start 11219; End 12151; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2379 2621 344 + . Target "NM_005641"; Start 8006; End 8248; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 673 1017 321 + . Target "NM_005641"; Start 5471; End 5833; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4519 4773 315 + . Target "NM_005641"; Start 10778; End 11065; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1719 1913 285 + . Target "NM_005641"; Start 7067; End 7261; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2 172 262 + . Target "NM_005641"; Start 5139; End 5309; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1212 1409 252 + . Target "NM_005641"; Start 6373; End 6564; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 762 1061 252 + . Target "NM_005641"; Start 5572; End 5880; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3432 3638 247 + . Target "NM_005641"; Start 9233; End 9439; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2378 2605 227 + . Target "NM_005641"; Start 8005; End 8232; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3140 3613 194 + . Target "NM_005641"; Start 8935; End 9414; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2116 2373 190 + . Target "NM_005641"; Start 7444; End 7698; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 6 173 188 + . Target "NM_005641"; Start 5143; End 5310; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 505 738 187 + . Target "NM_005641"; Start 5322; End 5579; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 7 174 184 + . Target "NM_005641"; Start 5144; End 5311; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1228 1458 178 + . Target "NM_005641"; Start 6368; End 6613; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1906 2100 159 + . Target "NM_005641"; Start 7265; End 7450; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1980 2348 159 + . Target "NM_005641"; Start 7329; End 7676; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1941 2126 136 + . Target "NM_005641"; Start 7288; End 7482; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1104 1226 135 + . Target "NM_005641"; Start 5927; End 6040; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 5612 5878 94 + . Target "NM_005641"; Start 12030; End 12278; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2791 2877 73 + . Target "NM_005641"; Start 676; End 744; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3083 3175 71 + . Target "NM_005641"; Start 10044; End 10178; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2773 2880 71 + . Target "NM_005641"; Start 1278; End 1358; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 683 787 65 + . Target "NM_005641"; Start 3408; End 3518; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3503 3724 63 + . Target "NM_005641"; Start 11672; End 11920; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 405 464 61 + . Target "NM_005641"; Start 1930; End 1989; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2790 3026 61 + . Target "NM_005641"; Start 6614; End 6844; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4895 5158 60 + . Target "NM_005641"; Start 11942; End 12223; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4041 4097 60 + . Target "NM_005641"; Start 6339; End 6395; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2785 2850 59 + . Target "NM_005641"; Start 10005; End 10058; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 686 784 59 + . Target "NM_005641"; Start 6667; End 6771; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3121 3186 59 + . Target "NM_005641"; Start 6873; End 6935; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3028 3171 59 + . Target "NM_005641"; Start 3684; End 3836; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3123 3182 59 + . Target "NM_005641"; Start 2946; End 3005; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 304 519 55 + . Target "NM_005641"; Start 9309; End 9518; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4041 4100 54 + . Target "NM_005641"; Start 10281; End 10340; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4047 4109 54 + . Target "NM_005641"; Start 8664; End 8726; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3031 3174 53 + . Target "NM_005641"; Start 10322; End 10477; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 686 772 53 + . Target "NM_005641"; Start 3720; End 3812; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2770 2850 53 + . Target "NM_005641"; Start 6603; End 6668; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3136 3177 53 + . Target "NM_005641"; Start 1110; End 1151; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4579 4647 52 + . Target "NM_005641"; Start 8188; End 8256; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3028 3141 52 + . Target "NM_005641"; Start 685; End 810; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2804 2836 51 + . Target "NM_005641"; Start 8525; End 8557; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3095 3175 51 + . Target "NM_005641"; Start 10407; End 10478; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4002 4097 51 + . Target "NM_005641"; Start 4547; End 4645; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4166 4249 50 + . Target "NM_005641"; Start 7241; End 7333; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 5536 5694 50 + . Target "NM_005641"; Start 11141; End 11311; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 555 608 50 + . Target "NM_005641"; Start 7342; End 7392; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 405 464 50 + . Target "NM_005641"; Start 7849; End 7908; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1447 1500 49 + . Target "NM_005641"; Start 6928; End 6978; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2916 3011 49 + . Target "NM_005641"; Start 10443; End 10541; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 931 1125 49 + . Target "NM_005641"; Start 5746; End 5943; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1501 1587 49 + . Target "NM_005641"; Start 7763; End 7849; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3028 3168 49 + . Target "NM_005641"; Start 1465; End 1587; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3121 3168 48 + . Target "NM_005641"; Start 6321; End 6365; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2792 2842 48 + . Target "NM_005641"; Start 3674; End 3715; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3083 3139 48 + . Target "NM_005641"; Start 4520; End 4585; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4029 4091 48 + . Target "NM_005641"; Start 2821; End 2880; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2913 2969 47 + . Target "NM_005641"; Start 8482; End 8538; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3118 3150 47 + . Target "NM_005641"; Start 10544; End 10576; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4047 4097 47 + . Target "NM_005641"; Start 8493; End 8543; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 689 784 47 + . Target "NM_005641"; Start 4665; End 4766; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3086 3115 47 + . Target "NM_005641"; Start 6827; End 6856; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3083 3121 47 + . Target "NM_005641"; Start 6654; End 6692; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3056 3211 47 + . Target "NM_005641"; Start 2989; End 3156; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3136 3168 46 + . Target "NM_005641"; Start 10275; End 10307; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 408 476 46 + . Target "NM_005641"; Start 1798; End 1866; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4888 4950 46 + . Target "NM_005641"; Start 10422; End 10484; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 546 590 46 + . Target "NM_005641"; Start 3051; End 3086; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2806 2844 46 + . Target "NM_005641"; Start 6047; End 6094; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 5758 5823 46 + . Target "NM_005641"; Start 10842; End 10907; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2794 2871 46 + . Target "NM_005641"; Start 3670; End 3747; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3621 3713 46 + . Target "NM_005641"; Start 4612; End 4704; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1143 1187 45 + . Target "NM_005641"; Start 8580; End 8624; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3029 3121 45 + . Target "NM_005641"; Start 1299; End 1361; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4047 4091 45 + . Target "NM_005641"; Start 3813; End 3857; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4233 4304 45 + . Target "NM_005641"; Start 2166; End 2240; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4353 4457 45 + . Target "NM_005641"; Start 2071; End 2172; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3817 3882 44 + . Target "NM_005641"; Start 9908; End 9973; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3012 3152 44 + . Target "NM_005641"; Start 8506; End 8667; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3144 3176 44 + . Target "NM_005641"; Start 10447; End 10479; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 5430 5534 44 + . Target "NM_005641"; Start 9313; End 9423; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4655 4735 44 + . Target "NM_005641"; Start 6495; End 6575; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3793 3849 44 + . Target "NM_005641"; Start 5563; End 5619; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3118 3165 44 + . Target "NM_005641"; Start 3610; End 3654; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3083 3166 44 + . Target "NM_005641"; Start 1017; End 1100; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 5625 5684 44 + . Target "NM_005641"; Start 5493; End 5552; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3138 3176 43 + . Target "NM_005641"; Start 8788; End 8826; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3654 3728 43 + . Target "NM_005641"; Start 9429; End 9503; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 405 476 43 + . Target "NM_005641"; Start 4206; End 4277; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 856 978 43 + . Target "NM_005641"; Start 6448; End 6570; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1600 1629 43 + . Target "NM_005641"; Start 4298; End 4327; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 5434 5481 43 + . Target "NM_005641"; Start 10718; End 10765; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3075 3125 43 + . Target "NM_005641"; Start 11897; End 11947; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2978 3019 43 + . Target "NM_005641"; Start 3874; End 3915; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4041 4091 43 + . Target "NM_005641"; Start 1561; End 1608; Strand +; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4866 5786 772 - . Target "NM_005641"; Start 11211; End 12152; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2258 2611 309 - . Target "NM_005641"; Start 7852; End 8238; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 762 1058 293 - . Target "NM_005641"; Start 5572; End 5877; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4518 4721 290 - . Target "NM_005641"; Start 10777; End 10992; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1718 1912 261 - . Target "NM_005641"; Start 7066; End 7260; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3392 3643 250 - . Target "NM_005641"; Start 9172; End 9441; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4 174 236 - . Target "NM_005641"; Start 5141; End 5311; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1259 1408 235 - . Target "NM_005641"; Start 6414; End 6563; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2116 2349 209 - . Target "NM_005641"; Start 7444; End 7677; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3 173 192 - . Target "NM_005641"; Start 5140; End 5310; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2 172 190 - . Target "NM_005641"; Start 5139; End 5309; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2112 2345 166 - . Target "NM_005641"; Start 7440; End 7673; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1998 2099 148 - . Target "NM_005641"; Start 7348; End 7449; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3291 3386 137 - . Target "NM_005641"; Start 9067; End 9162; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 554 769 135 - . Target "NM_005641"; Start 5386; End 5583; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1118 1225 125 - . Target "NM_005641"; Start 5941; End 6039; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 5705 5878 83 - . Target "NM_005641"; Start 12081; End 12278; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 5677 5877 76 - . Target "NM_005641"; Start 12065; End 12277; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3036 3185 73 - . Target "NM_005641"; Start 6791; End 6934; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3030 3167 67 - . Target "NM_005641"; Start 6242; End 6364; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 930 1091 66 - . Target "NM_005641"; Start 5745; End 5909; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3052 3177 65 - . Target "NM_005641"; Start 10013; End 10180; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4035 4103 65 - . Target "NM_005641"; Start 2824; End 2886; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2978 3142 64 - . Target "NM_005641"; Start 2639; End 2797; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3139 3177 61 - . Target "NM_005641"; Start 1113; End 1151; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3915 4103 60 - . Target "NM_005641"; Start 8367; End 8549; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2999 3148 60 - . Target "NM_005641"; Start 686; End 817; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3136 3180 59 - . Target "NM_005641"; Start 10439; End 10483; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3089 3190 58 - . Target "NM_005641"; Start 884; End 994; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 10281; End 10340; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2769 2870 57 - . Target "NM_005641"; Start 5032; End 5118; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 3807; End 3863; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3121 3177 56 - . Target "NM_005641"; Start 1405; End 1461; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 638 715 56 - . Target "NM_005641"; Start 10988; End 11065; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3115 3186 55 - . Target "NM_005641"; Start 6849; End 6935; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3089 3166 55 - . Target "NM_005641"; Start 4821; End 4907; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 399 542 54 - . Target "NM_005641"; Start 1789; End 1911; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2789 2944 54 - . Target "NM_005641"; Start 1282; End 1452; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3041 3163 54 - . Target "NM_005641"; Start 2112; End 2240; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 5574 5693 53 - . Target "NM_005641"; Start 11203; End 11310; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2728 3000 53 - . Target "NM_005641"; Start 4572; End 4838; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2986 3189 53 - . Target "NM_005641"; Start 3493; End 3678; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 399 503 53 - . Target "NM_005641"; Start 9591; End 9707; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 405 467 52 - . Target "NM_005641"; Start 1930; End 1992; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2785 3006 52 - . Target "NM_005641"; Start 2692; End 2925; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3142 3171 52 - . Target "NM_005641"; Start 3807; End 3836; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3139 3195 52 - . Target "NM_005641"; Start 1558; End 1614; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 224 295 51 - . Target "NM_005641"; Start 298; End 369; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2784 2855 51 - . Target "NM_005641"; Start 10004; End 10063; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2787 2855 51 - . Target "NM_005641"; Start 6611; End 6673; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3135 3176 51 - . Target "NM_005641"; Start 1109; End 1150; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3032 3148 50 - . Target "NM_005641"; Start 8535; End 8663; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3918 4088 50 - . Target "NM_005641"; Start 8541; End 8705; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3122 3190 50 - . Target "NM_005641"; Start 2945; End 3013; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3577 3663 50 - . Target "NM_005641"; Start 3545; End 3634; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2659 2865 49 - . Target "NM_005641"; Start 5924; End 6115; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3121 3171 49 - . Target "NM_005641"; Start 3480; End 3527; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3118 3171 49 - . Target "NM_005641"; Start 2809; End 2859; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 399 521 48 - . Target "NM_005641"; Start 4200; End 4301; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3135 3173 48 - . Target "NM_005641"; Start 10438; End 10476; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2905 3006 48 - . Target "NM_005641"; Start 6192; End 6299; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4020 4103 48 - . Target "NM_005641"; Start 2202; End 2279; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3139 3189 47 - . Target "NM_005641"; Start 10278; End 10328; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1973 2083 47 - . Target "NM_005641"; Start 1531; End 1635; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4043 4114 47 - . Target "NM_005641"; Start 3809; End 3883; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4227 4262 46 - . Target "NM_005641"; Start 10701; End 10736; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3142 3177 46 - . Target "NM_005641"; Start 8487; End 8522; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 10442; End 10495; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3577 3639 46 - . Target "NM_005641"; Start 10736; End 10804; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3077 3163 46 - . Target "NM_005641"; Start 6691; End 6771; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1179 1295 46 - . Target "NM_005641"; Start 7256; End 7369; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4040 4096 46 - . Target "NM_005641"; Start 6338; End 6394; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 3495; End 3548; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 903 1046 45 - . Target "NM_005641"; Start 41; End 181; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1882 1920 45 - . Target "NM_005641"; Start 9717; End 9755; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2138 2248 45 - . Target "NM_005641"; Start 207; End 329; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4556 4660 45 - . Target "NM_005641"; Start 6331; End 6435; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2802 2915 45 - . Target "NM_005641"; Start 3675; End 3797; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4041 4067 45 - . Target "NM_005641"; Start 812; End 838; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3104 3148 44 - . Target "NM_005641"; Start 10530; End 10574; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 949 984 44 - . Target "NM_005641"; Start 6325; End 6360; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 2110 2166 44 - . Target "NM_005641"; Start 12002; End 12058; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4348 4377 44 - . Target "NM_005641"; Start 2060; End 2089; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3140 3181 43 - . Target "NM_005641"; Start 8790; End 8831; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4529 4606 43 - . Target "NM_005641"; Start 10185; End 10262; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 1189 1383 43 - . Target "NM_005641"; Start 6370; End 6537; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3119 3193 43 - . Target "NM_005641"; Start 4864; End 4938; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 3120 3167 43 - . Target "NM_005641"; Start 1542; End 1586; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 632 706 43 - . Target "NM_005641"; Start 9145; End 9219; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4355 4378 43 - . Target "NM_005641"; Start 2069; End 2092; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4352 4402 43 - . Target "NM_005641"; Start 2070; End 2120; Strand -; Frame .; 3520s Warning: unexpected tab character in last column, line truncated: 3520s NM_009315 TBLASTX hsp 4639 4668 43 - . Target "NM_005641"; Start 3306; End 3335; Strand -; Frame .; 3520s is okay. 3520s /usr/share/doc/gff2ps/test-data/Hsap_BTK_annotation.gff: is okay. 3520s /usr/share/doc/gff2ps/test-data/Hsap_BTK_geneid.gff: Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 1728 1787 0.09 - 0 gene_1 # AA 212:231 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 2506 2618 2.93 - 2 gene_1 # AA 174:211 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 4112 4225 0.50 - 2 gene_1 # AA 136:174 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 8833 8959 -0.24 - 0 gene_1 # AA 94:136 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 9956 10089 1.98 - 2 gene_1 # AA 49: 93 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 13081 13159 0.13 - 0 gene_1 # AA 23: 49 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 First 13984 14049 -0.61 - 0 gene_1 # AA 1: 22 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Terminal 17520 17785 4.22 - 2 gene_2 # AA 86:174 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 First 19296 19551 14.31 - 0 gene_2 # AA 1: 86 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Terminal 76391 76462 1.12 - 0 gene_3 # AA 636:659 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 79700 79857 1.52 - 2 gene_3 # AA 583:635 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 80376 80494 0.93 - 1 gene_3 # AA 543:583 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 81136 81200 0.46 - 0 gene_3 # AA 522:543 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 82558 82774 5.08 - 1 gene_3 # AA 449:521 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 83290 83533 4.90 - 2 gene_3 # AA 368:449 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 84816 84943 0.10 - 1 gene_3 # AA 325:368 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 85123 85202 1.44 - 0 gene_3 # AA 299:325 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 85799 85853 0.18 - 1 gene_3 # AA 280:298 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 86594 86656 1.66 - 1 gene_3 # AA 259:280 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 87074 87261 4.48 - 0 gene_3 # AA 197:259 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 88679 88746 -0.20 - 2 gene_3 # AA 174:196 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 89067 89195 2.37 - 2 gene_3 # AA 131:174 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 96504 96585 -1.14 - 0 gene_3 # AA 104:131 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 98139 98207 2.20 - 0 gene_3 # AA 81:103 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 101042 101140 1.03 - 0 gene_3 # AA 48: 80 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 First 101650 101790 2.04 - 0 gene_3 # AA 1: 47 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 First 117154 117294 -1.72 + 0 gene_4 # AA 1: 47 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 117965 118070 4.71 + 0 gene_4 # AA 48: 83 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 118261 118328 1.96 + 2 gene_4 # AA 83:105 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Terminal 122234 122254 -1.95 + 0 gene_4 # AA 106:112 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Terminal 124315 124605 1.49 - 0 gene_5 # AA 321:417 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 124876 125073 4.19 - 0 gene_5 # AA 255:320 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 125291 125452 1.81 - 0 gene_5 # AA 201:254 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 128085 128315 6.42 - 0 gene_5 # AA 124:200 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 130317 130491 3.37 - 1 gene_5 # AA 65:123 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 First 134216 134409 3.06 - 0 gene_5 # AA 1: 65 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Single 138576 139844 33.14 + 0 gene_6 # AA 1:423 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 First 144801 145043 4.49 + 0 gene_7 # AA 1: 81 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 170448 170661 4.00 + 0 gene_7 # AA 82:153 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK geneid_v1.0 Internal 172504 172550 0.78 + 2 gene_7 # AA 153:168 3520s is okay. 3520s /usr/share/doc/gff2ps/test-data/Hsap_BTK_genscan.gff: is okay. 3520s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgp3X.gff: Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 4565 4627 8.56 - 0 gene_1 # AA 149:169 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 9956 10143 23.75 - 2 gene_1 # AA 86:148 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X First 62698 62700 -9.86 + 0 gene_2 # AA 1: 1 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Terminal 67179 67508 54.90 + 0 gene_2 # AA 2:111 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Terminal 73005 73235 25.73 - 0 gene_3 # AA 75:151 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X First 74949 75170 18.73 - 0 gene_3 # AA 1: 74 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Terminal 79661 79857 26.63 - 2 gene_4 # AA 643:708 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 80376 80494 21.80 - 1 gene_4 # AA 603:643 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 81136 81200 -1.59 - 0 gene_4 # AA 582:603 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 82558 82813 51.33 - 1 gene_4 # AA 496:581 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 83290 83533 36.85 - 2 gene_4 # AA 415:496 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 84015 84089 4.73 - 2 gene_4 # AA 390:415 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 84816 84943 22.24 - 1 gene_4 # AA 347:390 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 85123 85202 -0.04 - 0 gene_4 # AA 321:347 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 85799 85853 7.75 - 1 gene_4 # AA 302:320 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 86594 86656 13.00 - 1 gene_4 # AA 281:302 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 87074 87261 30.63 - 0 gene_4 # AA 219:281 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 88679 88746 2.93 - 2 gene_4 # AA 196:218 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 89067 89195 23.15 - 2 gene_4 # AA 153:196 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 96504 96585 8.97 - 0 gene_4 # AA 126:153 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 98139 98207 0.53 - 0 gene_4 # AA 103:125 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 101042 101140 16.57 - 0 gene_4 # AA 70:102 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X First 101650 101856 25.46 - 0 gene_4 # AA 1: 69 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X First 117550 117552 -2.98 + 0 gene_5 # AA 1: 1 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 117965 118070 22.92 + 0 gene_5 # AA 2: 37 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 118261 118328 16.58 + 2 gene_5 # AA 37: 59 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 121841 121963 15.59 + 0 gene_5 # AA 60:100 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Terminal 122234 122254 -4.89 + 0 gene_5 # AA 101:107 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Terminal 124315 124605 22.92 - 0 gene_6 # AA 299:395 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 124876 125073 18.14 - 0 gene_6 # AA 233:298 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 125291 125439 21.75 - 2 gene_6 # AA 183:232 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 128138 128315 26.47 - 0 gene_6 # AA 124:183 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Internal 130317 130491 29.80 - 1 gene_6 # AA 65:123 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X First 134216 134409 27.80 - 0 gene_6 # AA 1: 65 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Single 138495 139844 385.08 + 0 gene_7 # AA 1:450 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X First 143504 143527 -6.11 + 0 gene_8 # AA 1: 8 3520s Warning: unexpected tab character in last column, line truncated: 3520s Hsap_BTK SGP.3X Terminal 170195 170470 60.77 + 0 gene_8 # AA 9:100 3520s is okay. 3521s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgpFO.gff: Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 2506 2618 3.13 - 2 gene_1 # AA 86:123 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Terminal 73005 73166 23.20 - 0 gene_2 # AA 45: 98 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol First 75039 75170 14.19 - 0 gene_2 # AA 1: 44 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Terminal 76391 76462 7.44 - 0 gene_3 # AA 692:715 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 79700 79857 27.01 - 2 gene_3 # AA 639:691 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 80376 80494 22.45 - 1 gene_3 # AA 599:639 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 81136 81200 8.61 - 0 gene_3 # AA 578:599 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 82558 82774 44.53 - 1 gene_3 # AA 505:577 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 83290 83533 36.85 - 2 gene_3 # AA 424:505 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 84015 84089 4.73 - 2 gene_3 # AA 399:424 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 84816 84943 22.49 - 1 gene_3 # AA 356:399 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 85123 85202 -0.04 - 0 gene_3 # AA 330:356 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 85799 85853 7.75 - 1 gene_3 # AA 311:329 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 86594 86656 13.00 - 1 gene_3 # AA 290:311 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 87074 87261 30.63 - 0 gene_3 # AA 228:290 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 88679 88746 2.93 - 2 gene_3 # AA 205:227 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 89067 89195 23.15 - 2 gene_3 # AA 162:205 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 96504 96585 8.97 - 0 gene_3 # AA 135:162 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 98139 98207 9.18 - 0 gene_3 # AA 112:134 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 101042 101140 16.57 - 0 gene_3 # AA 79:111 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 101650 101839 30.76 - 1 gene_3 # AA 15: 78 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol First 112445 112488 -1.77 - 0 gene_3 # AA 1: 15 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol First 117550 117552 -2.98 + 0 gene_4 # AA 1: 1 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 117965 118070 22.92 + 0 gene_4 # AA 2: 37 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 118261 118328 16.58 + 2 gene_4 # AA 37: 59 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 121841 121963 15.59 + 0 gene_4 # AA 60:100 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Terminal 122234 122254 -4.89 + 0 gene_4 # AA 101:107 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Terminal 124315 124605 22.92 - 0 gene_5 # AA 334:430 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 124876 125073 37.51 - 0 gene_5 # AA 268:333 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 125291 125452 26.77 - 0 gene_5 # AA 214:267 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 127172 127263 5.78 - 2 gene_5 # AA 183:213 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 128138 128315 37.95 - 0 gene_5 # AA 124:183 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 130317 130491 30.15 - 1 gene_5 # AA 65:123 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol First 134216 134409 27.80 - 0 gene_5 # AA 1: 65 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Single 138495 139844 270.80 + 0 gene_6 # AA 1:450 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol First 170637 170661 -0.90 + 0 gene_7 # AA 1: 9 3521s Warning: unexpected tab character in last column, line truncated: 3521s Hsap_BTK SGP.homol Internal 172504 172550 2.43 + 2 gene_7 # AA 9: 24 3521s is okay. 3521s /usr/share/htslib-test/test/tabix/gff_file.gff: is okay. 3522s /usr/share/doc/libbio-graphics-perl/examples/feature_data.gff: is okay. 3522s /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gff: is okay. 3522s /usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3: is okay. 3523s /usr/lib/python3/dist-packages/gffutils/test/data/gms2_example.gff3: is okay. 3523s /usr/lib/python3/dist-packages/gffutils/test/data/hybrid1.gff3: is okay. 3523s /usr/lib/python3/dist-packages/gffutils/test/data/intro_docs_example.gff: is okay. 3523s /usr/lib/python3/dist-packages/gffutils/test/data/issue167.gff: is okay. 3523s /usr/lib/python3/dist-packages/gffutils/test/data/issue_197.gff: is okay. 3523s /usr/lib/python3/dist-packages/gffutils/test/data/keyval_sep_in_attrs.gff: is okay. 3523s /usr/lib/python3/dist-packages/gffutils/test/data/random-chr.gff: is okay. 3523s /usr/lib/python3/dist-packages/gffutils/test/data/synthetic.gff3: is okay. 3524s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/ITAG4.1_gene_models.subset.gff: is okay. 3524s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/NC_011025.gff: is okay. 3524s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v1.gff3: is okay. 3524s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.gff3: is okay. 3524s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff: is okay. 3525s /usr/lib/R/site-library/Gviz/extdata/test.gff: is okay. 3525s /usr/lib/R/site-library/Gviz/extdata/test.gff1: is okay. 3525s /usr/lib/R/site-library/Gviz/extdata/test.gff3: is okay. 3525s /usr/lib/R/site-library/Rhtslib/testdata/tabix/gff_file.gff: is okay. 3526s /usr/lib/R/site-library/rtracklayer/tests/gtf.gff: Warning: unexpected tab character in last column, line truncated: 3526s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22572990 22573061 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1"; 3526s Warning: unexpected tab character in last column, line truncated: 3526s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22572990 22573010 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1"; 3526s Warning: unexpected tab character in last column, line truncated: 3526s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22568081 22568323 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1"; 3526s Warning: unexpected tab character in last column, line truncated: 3526s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22568081 22568323 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1"; 3526s Warning: unexpected tab character in last column, line truncated: 3526s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22566859 22567246 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1"; 3526s Warning: unexpected tab character in last column, line truncated: 3526s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22566977 22567246 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1"; 3526s is okay. 3526s /usr/lib/R/site-library/rtracklayer/tests/v1.gff: is okay. 3526s /usr/lib/R/site-library/rtracklayer/tests/v3.gff: is okay. 3527s /usr/share/doc/seqan-apps/gustaf/example/stellar.gff: is okay. 3527s /usr/share/doc/seqan-apps/insegt/example/annotations.gff: is okay. 3527s /usr/share/doc/seqan-apps/insegt/example/readOutput.gff: is okay. 3527s /usr/share/doc/seqan-apps/insegt/example/tupleOutput.gff: is okay. 3527s /usr/share/doc/seqan-apps/snp_store/example/exampleReads.gff: is okay. 3528s /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff: is okay. 3529s /usr/share/doc/cnvkit/examples/test/formats/example.gff: is okay. 3529s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v21.gff3: is okay. 3529s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v22.gff3: is okay. 3529s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3: is okay. 3530s /usr/share/doc/proteinortho/examples/C.gff: is okay. 3530s /usr/share/doc/proteinortho/examples/C2.gff: is okay. 3530s /usr/share/doc/proteinortho/examples/E.gff: is okay. 3530s /usr/share/doc/proteinortho/examples/L.gff: is okay. 3531s /usr/share/doc/proteinortho/examples/M.gff: is okay. 3532s /usr/lib/python3/dist-packages/pybedtools/test/data/d.gff: is okay. 3532s /usr/lib/python3/dist-packages/pybedtools/test/data/exons.gff: is okay. 3532s /usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff: is okay. 3532s /usr/lib/python3/dist-packages/pybedtools/test/data/hg19.gff: is okay. 3540s autopkgtest [20:21:54]: test run-tests: -----------------------] 3544s autopkgtest [20:21:58]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 3544s run-tests PASS 3547s autopkgtest [20:22:01]: @@@@@@@@@@@@@@@@@@@@ summary 3547s run-tests PASS 3615s nova [W] Skipping flock in bos03-arm64 3615s Creating nova instance adt-oracular-arm64-gffread-20240622-181239-juju-7f2275-prod-proposed-migration-environment-2-f6dfbe7d-cc81-48b7-981f-b7a5a7aa5cbd from image adt/ubuntu-oracular-arm64-server-20240620.img (UUID 56ad7025-f436-4a1b-b042-95a954dda8b6)...