1s autopkgtest [21:28:32]: starting date and time: 2024-06-28 21:28:32+0000
  1s autopkgtest [21:28:33]: git checkout: 85adf9a1 setup-testbed: prevent /tmp from getting a tmpfs mount
  1s autopkgtest [21:28:33]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lpfgg663/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade elkcode --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-26.secgroup --name adt-oracular-arm64-elkcode-20240628-211447-juju-7f2275-prod-proposed-migration-environment-2-084e083c-c0b4-4343-ab20-fc4543edaa11 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 94s autopkgtest [21:30:06]: testbed dpkg architecture: arm64
 94s autopkgtest [21:30:06]: testbed apt version: 2.9.5
 94s autopkgtest [21:30:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 98s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB]
 98s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B]
 99s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [52.4 kB]
 99s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [377 kB]
 99s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
 99s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [97.6 kB]
 99s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [32.5 kB]
 99s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [390 kB]
 99s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [7928 B]
101s Fetched 1077 kB in 1s (1158 kB/s)
101s Reading package lists...
126s Reading package lists...
127s Building dependency tree...
127s Reading state information...
127s Calculating upgrade...
128s The following packages will be upgraded:
128s   libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales
128s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
128s Need to get 9207 kB of archives.
128s After this operation, 31.7 kB disk space will be freed.
128s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-devtools arm64 2.39-3.1ubuntu2 [27.7 kB]
128s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6-dev arm64 2.39-3.1ubuntu2 [1592 kB]
128s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-dev-bin arm64 2.39-3.1ubuntu2 [19.7 kB]
128s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc6 arm64 2.39-3.1ubuntu2 [2769 kB]
129s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libc-bin arm64 2.39-3.1ubuntu2 [579 kB]
129s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 locales all 2.39-3.1ubuntu2 [4220 kB]
130s Preconfiguring packages ...
130s Fetched 9207 kB in 1s (6987 kB/s)
130s (Reading database ... 
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(Reading database ... 78326 files and directories currently installed.)
130s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu2_arm64.deb ...
130s Unpacking libc-devtools (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ...
131s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu2_arm64.deb ...
131s Unpacking libc6-dev:arm64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ...
131s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu2_arm64.deb ...
131s Unpacking libc-dev-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ...
131s Preparing to unpack .../libc6_2.39-3.1ubuntu2_arm64.deb ...
131s Unpacking libc6:arm64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ...
131s Setting up libc6:arm64 (2.39-3.1ubuntu2) ...
132s (Reading database ... 
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(Reading database ... 78326 files and directories currently installed.)
132s Preparing to unpack .../libc-bin_2.39-3.1ubuntu2_arm64.deb ...
132s Unpacking libc-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ...
132s Setting up libc-bin (2.39-3.1ubuntu2) ...
132s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 78326 files and directories currently installed.)
132s Preparing to unpack .../locales_2.39-3.1ubuntu2_all.deb ...
132s Unpacking locales (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ...
132s Setting up locales (2.39-3.1ubuntu2) ...
134s Generating locales (this might take a while)...
137s   en_US.UTF-8... done
137s Generation complete.
138s Setting up libc-dev-bin (2.39-3.1ubuntu2) ...
138s Setting up libc-devtools (2.39-3.1ubuntu2) ...
138s Setting up libc6-dev:arm64 (2.39-3.1ubuntu2) ...
138s Processing triggers for man-db (2.12.1-2) ...
142s Reading package lists...
142s Building dependency tree...
142s Reading state information...
143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
145s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease
145s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease
145s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease
146s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
149s Reading package lists...
150s Reading package lists...
150s Building dependency tree...
150s Reading state information...
150s Calculating upgrade...
150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
151s Reading package lists...
151s Building dependency tree...
151s Reading state information...
151s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
177s autopkgtest [21:31:29]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024
177s autopkgtest [21:31:29]: @@@@@@@@@@@@@@@@@@@@ apt-source elkcode
184s Get:1 http://ftpmaster.internal/ubuntu oracular/universe elkcode 9.2.12-1build2 (dsc) [2187 B]
184s Get:2 http://ftpmaster.internal/ubuntu oracular/universe elkcode 9.2.12-1build2 (tar) [3299 kB]
185s Get:3 http://ftpmaster.internal/ubuntu oracular/universe elkcode 9.2.12-1build2 (diff) [10.4 kB]
185s gpgv: Signature made Mon Apr  1 05:45:40 2024 UTC
185s gpgv:                using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984
185s gpgv: Can't check signature: No public key
185s dpkg-source: warning: cannot verify inline signature for ./elkcode_9.2.12-1build2.dsc: no acceptable signature found
185s autopkgtest [21:31:37]: testing package elkcode version 9.2.12-1build2
189s autopkgtest [21:31:41]: build not needed
218s autopkgtest [21:32:10]: test testsuite.sh: preparing testbed
222s Reading package lists...
223s Building dependency tree...
223s Reading state information...
223s Starting pkgProblemResolver with broken count: 0
223s Starting 2 pkgProblemResolver with broken count: 0
223s Done
224s The following additional packages will be installed:
224s   elk-lapw libatomic1 libblas3 libevent-pthreads-2.1-7t64 libfabric1
224s   libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libhwloc-plugins
224s   libhwloc15 liblapack3 libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64
224s   librdmacm1t64 libucx0 libxc9 libxnvctrl0 mpi-default-bin ocl-icd-libopencl1
224s   openmpi-bin openmpi-common
224s Suggested packages:
224s   gnuplot xcrysden libfftw3-bin libfftw3-dev opencl-icd gfortran
224s   | fortran-compiler
224s The following NEW packages will be installed:
224s   autopkgtest-satdep elk-lapw libatomic1 libblas3 libevent-pthreads-2.1-7t64
224s   libfabric1 libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1
224s   libhwloc-plugins libhwloc15 liblapack3 libmunge2 libopenmpi3t64
224s   libpciaccess0 libpmix2t64 librdmacm1t64 libucx0 libxc9 libxnvctrl0
224s   mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common
224s 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded.
224s Need to get 17.5 MB/17.5 MB of archives.
224s After this operation, 52.6 MB of additional disk space will be used.
224s Get:1 /tmp/autopkgtest.b1ZEab/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B]
224s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB]
225s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14.1.0-1ubuntu1 [144 kB]
225s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu3 [384 kB]
225s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libfftw3-single3 arm64 3.3.10-1ubuntu3 [583 kB]
225s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB]
225s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB]
225s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B]
225s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14.1.0-1ubuntu1 [11.4 kB]
225s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 librdmacm1t64 arm64 50.0-2build2 [70.6 kB]
225s Get:11 http://ftpmaster.internal/ubuntu oracular/universe arm64 libfabric1 arm64 1.17.0-3build2 [541 kB]
225s Get:12 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhwloc15 arm64 2.10.0-1build1 [159 kB]
225s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB]
225s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB]
225s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB]
225s Get:16 http://ftpmaster.internal/ubuntu oracular/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB]
225s Get:17 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhwloc-plugins arm64 2.10.0-1build1 [15.7 kB]
225s Get:18 http://ftpmaster.internal/ubuntu oracular/universe arm64 libpmix2t64 arm64 5.0.1-4.1build1 [655 kB]
225s Get:19 http://ftpmaster.internal/ubuntu oracular/universe arm64 libucx0 arm64 1.16.0+ds-5ubuntu1 [1074 kB]
225s Get:20 http://ftpmaster.internal/ubuntu oracular/universe arm64 libopenmpi3t64 arm64 4.1.6-7ubuntu2 [2463 kB]
225s Get:21 http://ftpmaster.internal/ubuntu oracular/universe arm64 libxc9 arm64 5.2.3-1ubuntu1 [4109 kB]
226s Get:22 http://ftpmaster.internal/ubuntu oracular/universe arm64 openmpi-common all 4.1.6-7ubuntu2 [170 kB]
226s Get:23 http://ftpmaster.internal/ubuntu oracular/universe arm64 openmpi-bin arm64 4.1.6-7ubuntu2 [113 kB]
226s Get:24 http://ftpmaster.internal/ubuntu oracular/universe arm64 mpi-default-bin arm64 1.15build1 [2376 B]
226s Get:25 http://ftpmaster.internal/ubuntu oracular/universe arm64 elk-lapw arm64 9.2.12-1build2 [4109 kB]
227s Fetched 17.5 MB in 2s (10.3 MB/s)
227s Selecting previously unselected package libblas3:arm64.
227s (Reading database ... 
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(Reading database ... 78326 files and directories currently installed.)
227s Preparing to unpack .../00-libblas3_3.12.0-3build1_arm64.deb ...
227s Unpacking libblas3:arm64 (3.12.0-3build1) ...
227s Selecting previously unselected package libgomp1:arm64.
227s Preparing to unpack .../01-libgomp1_14.1.0-1ubuntu1_arm64.deb ...
227s Unpacking libgomp1:arm64 (14.1.0-1ubuntu1) ...
227s Selecting previously unselected package libfftw3-double3:arm64.
228s Preparing to unpack .../02-libfftw3-double3_3.3.10-1ubuntu3_arm64.deb ...
228s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu3) ...
228s Selecting previously unselected package libfftw3-single3:arm64.
228s Preparing to unpack .../03-libfftw3-single3_3.3.10-1ubuntu3_arm64.deb ...
228s Unpacking libfftw3-single3:arm64 (3.3.10-1ubuntu3) ...
228s Selecting previously unselected package libgfortran5:arm64.
229s Preparing to unpack .../04-libgfortran5_14.1.0-1ubuntu1_arm64.deb ...
229s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ...
229s Selecting previously unselected package liblapack3:arm64.
229s Preparing to unpack .../05-liblapack3_3.12.0-3build1_arm64.deb ...
229s Unpacking liblapack3:arm64 (3.12.0-3build1) ...
230s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64.
230s Preparing to unpack .../06-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ...
230s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ...
230s Selecting previously unselected package libatomic1:arm64.
230s Preparing to unpack .../07-libatomic1_14.1.0-1ubuntu1_arm64.deb ...
230s Unpacking libatomic1:arm64 (14.1.0-1ubuntu1) ...
230s Selecting previously unselected package librdmacm1t64:arm64.
231s Preparing to unpack .../08-librdmacm1t64_50.0-2build2_arm64.deb ...
231s Unpacking librdmacm1t64:arm64 (50.0-2build2) ...
231s Selecting previously unselected package libfabric1:arm64.
231s Preparing to unpack .../09-libfabric1_1.17.0-3build2_arm64.deb ...
231s Unpacking libfabric1:arm64 (1.17.0-3build2) ...
231s Selecting previously unselected package libhwloc15:arm64.
231s Preparing to unpack .../10-libhwloc15_2.10.0-1build1_arm64.deb ...
231s Unpacking libhwloc15:arm64 (2.10.0-1build1) ...
231s Selecting previously unselected package libmunge2:arm64.
231s Preparing to unpack .../11-libmunge2_0.5.15-4build1_arm64.deb ...
231s Unpacking libmunge2:arm64 (0.5.15-4build1) ...
231s Selecting previously unselected package libpciaccess0:arm64.
231s Preparing to unpack .../12-libpciaccess0_0.17-3build1_arm64.deb ...
231s Unpacking libpciaccess0:arm64 (0.17-3build1) ...
231s Selecting previously unselected package libxnvctrl0:arm64.
231s Preparing to unpack .../13-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ...
231s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ...
231s Selecting previously unselected package ocl-icd-libopencl1:arm64.
231s Preparing to unpack .../14-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ...
231s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ...
231s Selecting previously unselected package libhwloc-plugins:arm64.
231s Preparing to unpack .../15-libhwloc-plugins_2.10.0-1build1_arm64.deb ...
231s Unpacking libhwloc-plugins:arm64 (2.10.0-1build1) ...
231s Selecting previously unselected package libpmix2t64:arm64.
231s Preparing to unpack .../16-libpmix2t64_5.0.1-4.1build1_arm64.deb ...
231s Unpacking libpmix2t64:arm64 (5.0.1-4.1build1) ...
231s Selecting previously unselected package libucx0:arm64.
231s Preparing to unpack .../17-libucx0_1.16.0+ds-5ubuntu1_arm64.deb ...
231s Unpacking libucx0:arm64 (1.16.0+ds-5ubuntu1) ...
231s Selecting previously unselected package libopenmpi3t64:arm64.
232s Preparing to unpack .../18-libopenmpi3t64_4.1.6-7ubuntu2_arm64.deb ...
232s Unpacking libopenmpi3t64:arm64 (4.1.6-7ubuntu2) ...
232s Selecting previously unselected package libxc9:arm64.
232s Preparing to unpack .../19-libxc9_5.2.3-1ubuntu1_arm64.deb ...
232s Unpacking libxc9:arm64 (5.2.3-1ubuntu1) ...
232s Selecting previously unselected package openmpi-common.
232s Preparing to unpack .../20-openmpi-common_4.1.6-7ubuntu2_all.deb ...
232s Unpacking openmpi-common (4.1.6-7ubuntu2) ...
232s Selecting previously unselected package openmpi-bin.
232s Preparing to unpack .../21-openmpi-bin_4.1.6-7ubuntu2_arm64.deb ...
232s Unpacking openmpi-bin (4.1.6-7ubuntu2) ...
232s Selecting previously unselected package mpi-default-bin.
232s Preparing to unpack .../22-mpi-default-bin_1.15build1_arm64.deb ...
232s Unpacking mpi-default-bin (1.15build1) ...
232s Selecting previously unselected package elk-lapw.
232s Preparing to unpack .../23-elk-lapw_9.2.12-1build2_arm64.deb ...
232s Unpacking elk-lapw (9.2.12-1build2) ...
232s Selecting previously unselected package autopkgtest-satdep.
232s Preparing to unpack .../24-1-autopkgtest-satdep.deb ...
232s Unpacking autopkgtest-satdep (0) ...
232s Setting up libpciaccess0:arm64 (0.17-3build1) ...
232s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ...
232s Setting up libgomp1:arm64 (14.1.0-1ubuntu1) ...
232s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ...
232s Setting up libblas3:arm64 (3.12.0-3build1) ...
232s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
232s Setting up libmunge2:arm64 (0.5.15-4build1) ...
232s Setting up libhwloc15:arm64 (2.10.0-1build1) ...
232s Setting up libatomic1:arm64 (14.1.0-1ubuntu1) ...
232s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu3) ...
232s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ...
232s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ...
232s Setting up openmpi-common (4.1.6-7ubuntu2) ...
232s Setting up librdmacm1t64:arm64 (50.0-2build2) ...
232s Setting up libxc9:arm64 (5.2.3-1ubuntu1) ...
232s Setting up libfabric1:arm64 (1.17.0-3build2) ...
232s Setting up libucx0:arm64 (1.16.0+ds-5ubuntu1) ...
232s Setting up liblapack3:arm64 (3.12.0-3build1) ...
232s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
232s Setting up libfftw3-single3:arm64 (3.3.10-1ubuntu3) ...
232s Setting up libhwloc-plugins:arm64 (2.10.0-1build1) ...
232s Setting up libpmix2t64:arm64 (5.0.1-4.1build1) ...
232s Setting up libopenmpi3t64:arm64 (4.1.6-7ubuntu2) ...
232s Setting up openmpi-bin (4.1.6-7ubuntu2) ...
232s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
232s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
232s Setting up mpi-default-bin (1.15build1) ...
232s Setting up elk-lapw (9.2.12-1build2) ...
232s Setting up autopkgtest-satdep (0) ...
232s Processing triggers for man-db (2.12.1-2) ...
233s Processing triggers for libc-bin (2.39-3.1ubuntu2) ...
243s (Reading database ... 79397 files and directories currently installed.)
243s Removing autopkgtest-satdep (0) ...
253s autopkgtest [21:32:45]: test testsuite.sh: [-----------------------
261s 
261s Running test in directory test_001...
262s 
262s +---------------------------------+
262s | Elk code version 9.2.12 started |
262s +---------------------------------+
262s 
262s Number of MPI processes :      1
262s Number of OpenMP threads per MPI process :    2
262s Total number of threads (MPI x OpenMP) :      2
262s Maximum OpenMP nesting level :    4
262s Number of OpenMP threads at first nesting level :    2
262s Number of MKL threads :    2
262s 
262s RAM disk enabled
262s 
262s +-----------------------+
262s | Current task :      0 |
262s +-----------------------+
262s Info(checkmt): changed muffin-tin radius of species   3 (Cu) from   2.4000 to   1.9694
262s Info(checkmt): changed muffin-tin radius of species   4 (O) from   1.8000 to   1.4770
262s 
262s Info(findsymcrys): atomic basis shift (lattice) :
262s   0.5000000000      0.5000000000      0.5000000000    
262s See GEOMETRY.OUT for new atomic positions
270s 
270s Warning(gndstate): failed to reach self-consistency after    4 loops
271s 
271s +-----------------------+
271s | Current task :      1 |
271s +-----------------------+
278s 
278s Warning(gndstate): failed to reach self-consistency after    4 loops
280s 
280s +-----------------------+
280s | Current task :    115 |
280s +-----------------------+
282s 
282s Info(writeefg): electric field gradient written to EFG.OUT
282s 
282s +-----------------------+
282s | Current task :    500 |
282s +-----------------------+
282s 
282s Info(testcheck): passed all tests
282s 
282s +------------------+
282s | Elk code stopped |
282s +------------------+
282s  Passed
282s 
282s Running test in directory test_002...
282s 
282s +---------------------------------+
282s | Elk code version 9.2.12 started |
282s +---------------------------------+
282s 
282s Number of MPI processes :      1
282s Number of OpenMP threads per MPI process :    2
282s Total number of threads (MPI x OpenMP) :      2
282s Maximum OpenMP nesting level :    4
282s Number of OpenMP threads at first nesting level :    2
282s Number of MKL threads :    2
282s 
282s RAM disk enabled
282s 
282s +-----------------------+
282s | Current task :      0 |
282s +-----------------------+
282s Info(checkmt): changed muffin-tin radius of species   1 (Fe) from   2.4000 to   2.3202
283s 
283s Warning(gndstate): failed to reach self-consistency after    5 loops
283s 
283s +-----------------------+
283s | Current task :    500 |
283s +-----------------------+
283s 
283s Info(testcheck): passed all tests
283s 
283s +------------------+
283s | Elk code stopped |
283s +------------------+
284s  Passed
284s 
284s Running test in directory test_003...
284s 
284s +---------------------------------+
284s | Elk code version 9.2.12 started |
284s +---------------------------------+
284s 
284s Number of MPI processes :      1
284s Number of OpenMP threads per MPI process :    2
284s Total number of threads (MPI x OpenMP) :      2
284s Maximum OpenMP nesting level :    4
284s Number of OpenMP threads at first nesting level :    2
284s Number of MKL threads :    2
284s 
284s RAM disk enabled
284s 
284s +-----------------------+
284s | Current task :      0 |
284s +-----------------------+
284s Info(checkmt): changed muffin-tin radius of species   1 (Si) from   2.2000 to   2.1436
284s 
284s Info(findsymcrys): atomic basis shift (lattice) :
284s   0.3650000000      0.3650000000      0.3650000000    
284s See GEOMETRY.OUT for new atomic positions
285s 
285s Warning(gndstate): failed to reach self-consistency after   10 loops
285s 
285s +-----------------------+
285s | Current task :    500 |
285s +-----------------------+
285s 
285s Info(testcheck): passed all tests
285s 
285s +------------------+
285s | Elk code stopped |
285s +------------------+
285s  Passed
285s 
285s Running test in directory test_005...
285s 
285s +---------------------------------+
285s | Elk code version 9.2.12 started |
285s +---------------------------------+
285s 
285s Number of MPI processes :      1
285s Number of OpenMP threads per MPI process :    2
285s Total number of threads (MPI x OpenMP) :      2
285s Maximum OpenMP nesting level :    4
285s Number of OpenMP threads at first nesting level :    2
285s Number of MKL threads :    2
285s 
285s RAM disk enabled
285s 
285s +-----------------------+
285s | Current task :      0 |
285s +-----------------------+
285s Info(checkmt): changed muffin-tin radius of species   1 (Fe) from   2.4000 to   2.3615
286s 
286s Warning(gndstate): failed to reach self-consistency after    5 loops
286s 
286s +-----------------------+
286s | Current task :    500 |
286s +-----------------------+
286s 
286s Info(testcheck): passed all tests
286s 
286s +------------------+
286s | Elk code stopped |
286s +------------------+
286s  Passed
286s 
286s Running test in directory test_007...
286s 
286s +---------------------------------+
286s | Elk code version 9.2.12 started |
286s +---------------------------------+
286s 
286s Number of MPI processes :      1
286s Number of OpenMP threads per MPI process :    2
286s Total number of threads (MPI x OpenMP) :      2
286s Maximum OpenMP nesting level :    4
286s Number of OpenMP threads at first nesting level :    2
286s Number of MKL threads :    2
286s 
286s RAM disk enabled
286s 
286s +-----------------------+
286s | Current task :      0 |
286s +-----------------------+
299s 
299s +-----------------------+
299s | Current task :     15 |
299s +-----------------------+
299s 
299s Info(writelsj):
299s  muffin-tin L, S and J expectation values written to LSJ.OUT
299s 
299s +-----------------------+
299s | Current task :     16 |
299s +-----------------------+
300s 
300s Info(writelsj):
300s  muffin-tin L, S and J expectation values for each k-point and state
300s   in kstlist written to LSJ_KST.OUT
300s 
300s +-----------------------+
300s | Current task :    500 |
300s +-----------------------+
300s 
300s Info(testcheck): passed all tests
300s 
300s +------------------+
300s | Elk code stopped |
300s +------------------+
300s  Passed
300s 
300s Running test in directory test_009...
300s 
300s +---------------------------------+
300s | Elk code version 9.2.12 started |
300s +---------------------------------+
300s 
300s Number of MPI processes :      1
300s Number of OpenMP threads per MPI process :    2
300s Total number of threads (MPI x OpenMP) :      2
300s Maximum OpenMP nesting level :    4
300s Number of OpenMP threads at first nesting level :    2
300s Number of MKL threads :    2
300s 
300s RAM disk enabled
300s 
300s +-----------------------+
300s | Current task :      0 |
300s +-----------------------+
300s Info(checkmt): changed muffin-tin radius of species   1 (B) from   1.8000 to   1.6129
300s Info(checkmt): changed muffin-tin radius of species   2 (N+) from   1.4500 to   1.2993
301s 
301s Warning(gndstate): failed to reach self-consistency after    6 loops
301s 
301s +-----------------------+
301s | Current task :    140 |
301s +-----------------------+
301s Info(elnes):      1 of      8 k-points
301s Info(elnes):      5 of      8 k-points
301s Info(elnes):      6 of      8 k-points
301s Info(elnes):      2 of      8 k-points
301s Info(elnes):      7 of      8 k-points
301s Info(elnes):      3 of      8 k-points
301s Info(elnes):      8 of      8 k-points
301s Info(elnes):      4 of      8 k-points
301s 
301s Info(elnes):
301s  ELNES double differential cross-section written to ELNES.OUT
301s 
301s +-----------------------+
301s | Current task :    500 |
301s +-----------------------+
301s 
301s Info(testcheck): passed all tests
301s 
301s +------------------+
301s | Elk code stopped |
301s +------------------+
301s  Passed
301s 
301s Running test in directory test_010...
301s 
301s +---------------------------------+
301s | Elk code version 9.2.12 started |
301s +---------------------------------+
301s 
301s Number of MPI processes :      1
301s Number of OpenMP threads per MPI process :    2
301s Total number of threads (MPI x OpenMP) :      2
301s Maximum OpenMP nesting level :    4
301s Number of OpenMP threads at first nesting level :    2
301s Number of MKL threads :    2
301s 
301s RAM disk enabled
301s 
301s +-----------------------+
301s | Current task :      0 |
301s +-----------------------+
301s Info(checkmt): changed muffin-tin radius of species   1 (O) from   1.8000 to   0.9906
301s Info(checkmt): changed muffin-tin radius of species   2 (H) from   1.4000 to   0.7704
302s 
302s Warning(linengy): could not find   1 linearisation energies in s.c. loop     1
303s 
303s Warning(gndstate): failed to reach self-consistency after    2 loops
303s 
303s Warning(linengy): could not find   1 linearisation energies in s.c. loop     2
304s 
304s +-----------------------+
304s | Current task :    500 |
304s +-----------------------+
304s 
304s Info(testcheck): passed all tests
304s 
304s +------------------+
304s | Elk code stopped |
304s +------------------+
304s  Passed
304s 
304s Running test in directory test_011...
304s 
304s +---------------------------------+
304s | Elk code version 9.2.12 started |
304s +---------------------------------+
304s 
304s Number of MPI processes :      1
304s Number of OpenMP threads per MPI process :    2
304s Total number of threads (MPI x OpenMP) :      2
304s Maximum OpenMP nesting level :    4
304s Number of OpenMP threads at first nesting level :    2
304s Number of MKL threads :    2
304s 
304s RAM disk enabled
304s 
304s +-----------------------+
304s | Current task :      0 |
304s +-----------------------+
304s Info(checkmt): changed muffin-tin radius of species   1 (Si) from   2.2000 to   2.1964
304s 
304s Info(findsymcrys): atomic basis shift (lattice) :
304s   0.3750000000      0.3750000000      0.3750000000    
304s See GEOMETRY.OUT for new atomic positions
304s 
304s Warning(gndstate): failed to reach self-consistency after    2 loops
304s 
304s +-----------------------+
304s | Current task :      5 |
304s +-----------------------+
305s 
305s Info(genkmat):      2 of      2 k-points
305s Info(genkmat):      1 of      2 k-points
305s Info(hartfock): self-consistent loop number :    1
305s Info(eveqnhf):      1 of      2 k-points
305s Info(eveqnhf):      2 of      2 k-points
305s Info(hartfock): self-consistent loop number :    2
305s Info(eveqnhf):      1 of      2 k-points
305s Info(eveqnhf):      2 of      2 k-points
306s Info(exxengy):      2 of      2 k-points
306s Info(exxengy):      1 of      2 k-points
306s 
306s +-----------------------+
306s | Current task :    500 |
306s +-----------------------+
306s 
306s Info(testcheck): passed all tests
306s 
306s +------------------+
306s | Elk code stopped |
306s +------------------+
306s  Passed
306s 
306s Running test in directory test_013...
306s 
306s +---------------------------------+
306s | Elk code version 9.2.12 started |
306s +---------------------------------+
306s 
306s Number of MPI processes :      1
306s Number of OpenMP threads per MPI process :    2
306s Total number of threads (MPI x OpenMP) :      2
306s Maximum OpenMP nesting level :    4
306s Number of OpenMP threads at first nesting level :    2
306s Number of MKL threads :    2
306s 
306s RAM disk enabled
306s 
306s +-----------------------+
306s | Current task :      0 |
306s +-----------------------+
306s Info(checkmt): changed muffin-tin radius of species   1 (Fe) from   2.4000 to   2.3828
306s Info(checkmt): changed muffin-tin radius of species   2 (Al) from   2.2000 to   2.1842
315s 
315s Warning(gndstate): failed to reach self-consistency after    4 loops
320s 
320s +-----------------------+
320s | Current task :    500 |
320s +-----------------------+
320s 
320s Info(testcheck): passed all tests
320s 
320s +------------------+
320s | Elk code stopped |
320s +------------------+
321s  Passed
321s 
321s Running test in directory test_014...
322s 
322s +---------------------------------+
322s | Elk code version 9.2.12 started |
322s +---------------------------------+
322s 
322s Number of MPI processes :      1
322s Number of OpenMP threads per MPI process :    2
322s Total number of threads (MPI x OpenMP) :      2
322s Maximum OpenMP nesting level :    4
322s Number of OpenMP threads at first nesting level :    2
322s Number of MKL threads :    2
322s 
322s RAM disk enabled
322s 
322s +-----------------------+
322s | Current task :      0 |
322s +-----------------------+
322s Info(checkmt): changed muffin-tin radius of species   1 (Si) from   2.2000 to   2.1964
322s 
322s Info(findsymcrys): atomic basis shift (lattice) :
322s   0.3750000000      0.3750000000      0.3750000000    
322s See GEOMETRY.OUT for new atomic positions
322s Info(oepvcl):      1 of      8 k-points
322s Info(oepvcl):      2 of      8 k-points
323s Info(oepvcl):      3 of      8 k-points
323s Info(oepvcl):      4 of      8 k-points
324s Info(oepvcl):      5 of      8 k-points
324s Info(oepvcl):      6 of      8 k-points
325s Info(oepvcl):      7 of      8 k-points
325s Info(oepvcl):      8 of      8 k-points
327s Info(oepmain): done   10 iterations of   20
328s Info(oepmain): done   20 iterations of   20
328s 
328s Warning(gndstate): failed to reach self-consistency after    2 loops
328s Info(oepvcl):      1 of      8 k-points
328s Info(oepvcl):      2 of      8 k-points
329s Info(oepvcl):      3 of      8 k-points
329s Info(oepvcl):      4 of      8 k-points
330s Info(oepvcl):      5 of      8 k-points
330s Info(oepvcl):      6 of      8 k-points
331s Info(oepvcl):      7 of      8 k-points
331s Info(oepvcl):      8 of      8 k-points
333s Info(oepmain): done   10 iterations of   20
334s Info(oepmain): done   20 iterations of   20
334s Info(exxengy):      1 of      8 k-points
334s Info(exxengy):      5 of      8 k-points
334s Info(exxengy):      2 of      8 k-points
334s Info(exxengy):      6 of      8 k-points
335s Info(exxengy):      3 of      8 k-points
335s Info(exxengy):      7 of      8 k-points
335s Info(exxengy):      4 of      8 k-points
335s Info(exxengy):      8 of      8 k-points
335s 
335s +-----------------------+
335s | Current task :    500 |
335s +-----------------------+
335s 
335s Info(testcheck): passed all tests
335s 
335s +------------------+
335s | Elk code stopped |
335s +------------------+
336s  Passed
336s 
336s Running test in directory test_018...
336s 
336s +---------------------------------+
336s | Elk code version 9.2.12 started |
336s +---------------------------------+
336s 
336s Number of MPI processes :      1
336s Number of OpenMP threads per MPI process :    2
336s Total number of threads (MPI x OpenMP) :      2
336s Maximum OpenMP nesting level :    4
336s Number of OpenMP threads at first nesting level :    2
336s Number of MKL threads :    2
336s 
336s RAM disk enabled
336s 
336s +-----------------------+
336s | Current task :      0 |
336s +-----------------------+
337s 
337s +-----------------------+
337s | Current task :    205 |
337s +-----------------------+
338s Info(phonon): working on DYN_Q0000_0000_0000_S01_A001_P1.OUT
345s Info(phonon): working on DYN_Q0102_0000_0000_S01_A001_P1.OUT
356s Info(phonon): working on DYN_Q0102_0102_0102_S01_A001_P1.OUT
365s Info(phonon): working on DYN_Q0000_0000_0000_S01_A001_P2.OUT
373s Info(phonon): working on DYN_Q0102_0000_0000_S01_A001_P2.OUT
384s Info(phonon): working on DYN_Q0102_0102_0102_S01_A001_P2.OUT
394s Info(phonon): working on DYN_Q0000_0000_0000_S01_A001_P3.OUT
401s Info(phonon): working on DYN_Q0102_0000_0000_S01_A001_P3.OUT
410s Info(phonon): working on DYN_Q0102_0102_0102_S01_A001_P3.OUT
419s Info(dyntask): nothing more to do
419s 
419s +-----------------------+
419s | Current task :    210 |
419s +-----------------------+
423s 
423s Info(phdos):
423s  phonon density of states written to PHDOS.OUT
423s  thermodynamic properties written to THERMO.OUT
423s 
423s +-----------------------+
423s | Current task :    500 |
423s +-----------------------+
423s 
423s Info(testcheck): passed all tests
423s 
423s +------------------+
423s | Elk code stopped |
423s +------------------+
424s  Passed
428s autopkgtest [21:35:40]: test testsuite.sh: -----------------------]
437s testsuite.sh         PASS
437s autopkgtest [21:35:49]: test testsuite.sh:  - - - - - - - - - - results - - - - - - - - - -
440s autopkgtest [21:35:52]: @@@@@@@@@@@@@@@@@@@@ summary
440s testsuite.sh         PASS
487s nova [W] Skipping flock in bos03-arm64
487s Creating nova instance adt-oracular-arm64-elkcode-20240628-211447-juju-7f2275-prod-proposed-migration-environment-2-084e083c-c0b4-4343-ab20-fc4543edaa11 from image adt/ubuntu-oracular-arm64-server-20240628.img (UUID 1d33ad8b-0074-4d9e-8f8a-17cdfc67ef5f)...