0s autopkgtest [10:57:24]: starting date and time: 2024-06-16 10:57:24+0000 0s autopkgtest [10:57:24]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [10:57:24]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.18vv8v6b/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ruamel.yaml --apt-upgrade cwlformat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=ruamel.yaml/0.18.6+ds-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-40.secgroup --name adt-oracular-arm64-cwlformat-20240616-102217-juju-7f2275-prod-proposed-migration-environment-3-95dc7c53-536e-4774-b900-2b04e3f24985 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 702s autopkgtest [11:09:06]: testbed dpkg architecture: arm64 703s autopkgtest [11:09:07]: testbed apt version: 2.9.3 703s autopkgtest [11:09:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 705s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 706s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [388 kB] 706s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [36.1 kB] 706s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 706s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 706s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [55.3 kB] 706s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [33.3 kB] 706s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [311 kB] 707s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8312 B] 707s Fetched 952 kB in 2s (494 kB/s) 707s Reading package lists... 711s Reading package lists... 711s Building dependency tree... 711s Reading state information... 712s Calculating upgrade... 712s The following packages will be upgraded: 712s apt apt-utils dracut-install libapt-pkg6.0t64 libc-bin libc-dev-bin 712s libc-devtools libc6 libc6-dev libldap-common libldap2 libnss3 locales 712s python3-certifi ubuntu-pro-client ubuntu-pro-client-l10n 712s 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 712s Need to get 13.8 MB of archives. 712s After this operation, 9216 B of additional disk space will be used. 712s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 libc-devtools arm64 2.39-0ubuntu9 [27.8 kB] 712s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libc6-dev arm64 2.39-0ubuntu9 [1595 kB] 713s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libc-dev-bin arm64 2.39-0ubuntu9 [19.7 kB] 713s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libc6 arm64 2.39-0ubuntu9 [2776 kB] 713s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libc-bin arm64 2.39-0ubuntu9 [591 kB] 713s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libapt-pkg6.0t64 arm64 2.9.5 [967 kB] 713s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 apt arm64 2.9.5 [1362 kB] 713s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 apt-utils arm64 2.9.5 [211 kB] 713s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 locales all 2.39-0ubuntu9 [4235 kB] 713s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 ubuntu-pro-client-l10n arm64 32.3.1 [19.4 kB] 713s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 ubuntu-pro-client arm64 32.3.1 [228 kB] 713s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 dracut-install arm64 102-3ubuntu2 [32.4 kB] 713s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 libldap-common all 2.6.7+dfsg-1~exp1ubuntu9 [31.5 kB] 713s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libldap2 arm64 2.6.7+dfsg-1~exp1ubuntu9 [193 kB] 713s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libnss3 arm64 2:3.101-1 [1361 kB] 713s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-certifi all 2024.6.2-1 [160 kB] 718s Preconfiguring packages ... 720s Fetched 13.8 MB in 1s (13.9 MB/s) 722s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78264 files and directories currently installed.) 722s Preparing to unpack .../libc-devtools_2.39-0ubuntu9_arm64.deb ... 722s Unpacking libc-devtools (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ... 725s Preparing to unpack .../libc6-dev_2.39-0ubuntu9_arm64.deb ... 725s Unpacking libc6-dev:arm64 (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ... 727s Preparing to unpack .../libc-dev-bin_2.39-0ubuntu9_arm64.deb ... 727s Unpacking libc-dev-bin (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ... 728s Preparing to unpack .../libc6_2.39-0ubuntu9_arm64.deb ... 729s Unpacking libc6:arm64 (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ... 730s Setting up libc6:arm64 (2.39-0ubuntu9) ... 732s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78264 files and directories currently installed.) 732s Preparing to unpack .../libc-bin_2.39-0ubuntu9_arm64.deb ... 732s Unpacking libc-bin (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ... 732s Setting up libc-bin (2.39-0ubuntu9) ... 733s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78264 files and directories currently installed.) 733s Preparing to unpack .../libapt-pkg6.0t64_2.9.5_arm64.deb ... 733s Unpacking libapt-pkg6.0t64:arm64 (2.9.5) over (2.9.3) ... 733s Setting up libapt-pkg6.0t64:arm64 (2.9.5) ... 733s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78264 files and directories currently installed.) 733s Preparing to unpack .../archives/apt_2.9.5_arm64.deb ... 734s Unpacking apt (2.9.5) over (2.9.3) ... 735s Setting up apt (2.9.5) ... 743s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78264 files and directories currently installed.) 743s Preparing to unpack .../0-apt-utils_2.9.5_arm64.deb ... 743s Unpacking apt-utils (2.9.5) over (2.9.3) ... 747s Preparing to unpack .../1-locales_2.39-0ubuntu9_all.deb ... 747s Unpacking locales (2.39-0ubuntu9) over (2.39-0ubuntu8.1) ... 749s Preparing to unpack .../2-ubuntu-pro-client-l10n_32.3.1_arm64.deb ... 749s Unpacking ubuntu-pro-client-l10n (32.3.1) over (32.3) ... 750s Preparing to unpack .../3-ubuntu-pro-client_32.3.1_arm64.deb ... 751s Unpacking ubuntu-pro-client (32.3.1) over (32.3) ... 752s Preparing to unpack .../4-dracut-install_102-3ubuntu2_arm64.deb ... 752s Unpacking dracut-install (102-3ubuntu2) over (102-3ubuntu1) ... 752s Preparing to unpack .../5-libldap-common_2.6.7+dfsg-1~exp1ubuntu9_all.deb ... 752s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu9) over (2.6.7+dfsg-1~exp1ubuntu8) ... 753s Preparing to unpack .../6-libldap2_2.6.7+dfsg-1~exp1ubuntu9_arm64.deb ... 753s Unpacking libldap2:arm64 (2.6.7+dfsg-1~exp1ubuntu9) over (2.6.7+dfsg-1~exp1ubuntu8) ... 753s Preparing to unpack .../7-libnss3_2%3a3.101-1_arm64.deb ... 753s Unpacking libnss3:arm64 (2:3.101-1) over (2:3.100-1) ... 754s Preparing to unpack .../8-python3-certifi_2024.6.2-1_all.deb ... 754s Unpacking python3-certifi (2024.6.2-1) over (2023.11.17-1) ... 754s Setting up apt-utils (2.9.5) ... 754s Setting up libnss3:arm64 (2:3.101-1) ... 754s Setting up locales (2.39-0ubuntu9) ... 761s Generating locales (this might take a while)... 778s en_US.UTF-8... done 778s Generation complete. 780s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu9) ... 780s Setting up python3-certifi (2024.6.2-1) ... 784s Setting up dracut-install (102-3ubuntu2) ... 784s Setting up libc-dev-bin (2.39-0ubuntu9) ... 784s Setting up ubuntu-pro-client (32.3.1) ... 784s Installing new version of config file /etc/apparmor.d/ubuntu_pro_esm_cache ... 795s Setting up libldap2:arm64 (2.6.7+dfsg-1~exp1ubuntu9) ... 795s Setting up libc-devtools (2.39-0ubuntu9) ... 795s Setting up ubuntu-pro-client-l10n (32.3.1) ... 795s Setting up libc6-dev:arm64 (2.39-0ubuntu9) ... 795s Processing triggers for man-db (2.12.1-2) ... 797s Processing triggers for libc-bin (2.39-0ubuntu9) ... 798s Reading package lists... 798s Building dependency tree... 798s Reading state information... 799s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 800s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 800s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 800s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 800s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 806s Reading package lists... 807s Reading package lists... 807s Building dependency tree... 807s Reading state information... 808s Calculating upgrade... 809s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 809s Reading package lists... 809s Building dependency tree... 809s Reading state information... 810s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 811s autopkgtest [11:10:55]: rebooting testbed after setup commands that affected boot 820s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 853s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 862s autopkgtest [11:11:46]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 866s autopkgtest [11:11:50]: @@@@@@@@@@@@@@@@@@@@ apt-source cwlformat 870s Get:1 http://ftpmaster.internal/ubuntu oracular/universe cwlformat 2022.02.18-2 (dsc) [1560 B] 870s Get:2 http://ftpmaster.internal/ubuntu oracular/universe cwlformat 2022.02.18-2 (tar) [98.8 kB] 870s Get:3 http://ftpmaster.internal/ubuntu oracular/universe cwlformat 2022.02.18-2 (diff) [2180 B] 870s gpgv: Signature made Fri Dec 30 06:20:13 2022 UTC 870s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 870s gpgv: Can't check signature: No public key 870s dpkg-source: warning: cannot verify inline signature for ./cwlformat_2022.02.18-2.dsc: no acceptable signature found 871s autopkgtest [11:11:55]: testing package cwlformat version 2022.02.18-2 871s autopkgtest [11:11:55]: build not needed 872s autopkgtest [11:11:56]: test run-unit-test: preparing testbed 873s Reading package lists... 873s Building dependency tree... 873s Reading state information... 873s Starting pkgProblemResolver with broken count: 1 874s Starting 2 pkgProblemResolver with broken count: 1 874s Investigating (0) python3-ruamel.yaml:arm64 < none -> 0.18.6+ds-3 @un puN Ib > 874s Broken python3-ruamel.yaml:arm64 Depends on python3-ruamel.yaml.clib:arm64 < none | 0.2.8-1build1 @un uH > (>= 0.2.8-2) 874s Considering python3-ruamel.yaml.clib:arm64 0 as a solution to python3-ruamel.yaml:arm64 0 874s Re-Instated python3-ruamel.yaml.clib:arm64 874s Done 874s Some packages could not be installed. This may mean that you have 874s requested an impossible situation or if you are using the unstable 874s distribution that some required packages have not yet been created 874s or been moved out of Incoming. 874s The following information may help to resolve the situation: 874s 874s The following packages have unmet dependencies: 874s python3-ruamel.yaml : Depends: python3-ruamel.yaml.clib (>= 0.2.8-2) but 0.2.8-1build1 is to be installed 874s E: Unable to correct problems, you have held broken packages. 874s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from oracular-proposed 875s Reading package lists... 875s Building dependency tree... 875s Reading state information... 875s Starting pkgProblemResolver with broken count: 0 875s Starting 2 pkgProblemResolver with broken count: 0 875s Done 876s The following additional packages will be installed: 876s cwlformat python3-all python3-iniconfig python3-packaging python3-pluggy 876s python3-pytest python3-ruamel.yaml python3-ruamel.yaml.clib 876s The following NEW packages will be installed: 876s autopkgtest-satdep cwlformat python3-all python3-iniconfig python3-packaging 876s python3-pluggy python3-pytest python3-ruamel.yaml python3-ruamel.yaml.clib 876s 0 upgraded, 9 newly installed, 0 to remove and 31 not upgraded. 876s Need to get 580 kB/580 kB of archives. 876s After this operation, 2640 kB of additional disk space will be used. 876s Get:1 /tmp/autopkgtest.eeULYp/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 876s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 python3-ruamel.yaml.clib arm64 0.2.8+ds-1 [127 kB] 877s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 877s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 cwlformat all 2022.02.18-3 [7622 B] 877s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-all arm64 3.12.3-0ubuntu1 [888 B] 877s Get:6 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 877s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.0-1 [41.1 kB] 877s Get:8 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 877s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 python3-pytest all 8.2.2-1ubuntu1 [250 kB] 878s Fetched 580 kB in 1s (994 kB/s) 878s Selecting previously unselected package python3-ruamel.yaml.clib:arm64. 878s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78264 files and directories currently installed.) 878s Preparing to unpack .../0-python3-ruamel.yaml.clib_0.2.8+ds-1_arm64.deb ... 878s Unpacking python3-ruamel.yaml.clib:arm64 (0.2.8+ds-1) ... 878s Selecting previously unselected package python3-ruamel.yaml. 878s Preparing to unpack .../1-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 878s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 878s Selecting previously unselected package cwlformat. 878s Preparing to unpack .../2-cwlformat_2022.02.18-3_all.deb ... 878s Unpacking cwlformat (2022.02.18-3) ... 878s Selecting previously unselected package python3-all. 878s Preparing to unpack .../3-python3-all_3.12.3-0ubuntu1_arm64.deb ... 878s Unpacking python3-all (3.12.3-0ubuntu1) ... 878s Selecting previously unselected package python3-iniconfig. 878s Preparing to unpack .../4-python3-iniconfig_1.1.1-2_all.deb ... 878s Unpacking python3-iniconfig (1.1.1-2) ... 878s Selecting previously unselected package python3-packaging. 879s Preparing to unpack .../5-python3-packaging_24.0-1_all.deb ... 879s Unpacking python3-packaging (24.0-1) ... 879s Selecting previously unselected package python3-pluggy. 879s Preparing to unpack .../6-python3-pluggy_1.5.0-1_all.deb ... 879s Unpacking python3-pluggy (1.5.0-1) ... 879s Selecting previously unselected package python3-pytest. 879s Preparing to unpack .../7-python3-pytest_8.2.2-1ubuntu1_all.deb ... 879s Unpacking python3-pytest (8.2.2-1ubuntu1) ... 879s Selecting previously unselected package autopkgtest-satdep. 879s Preparing to unpack .../8-1-autopkgtest-satdep.deb ... 879s Unpacking autopkgtest-satdep (0) ... 879s Setting up python3-iniconfig (1.1.1-2) ... 879s Setting up python3-ruamel.yaml.clib:arm64 (0.2.8+ds-1) ... 879s Setting up python3-all (3.12.3-0ubuntu1) ... 879s Setting up python3-packaging (24.0-1) ... 880s Setting up python3-pluggy (1.5.0-1) ... 880s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 880s Setting up python3-pytest (8.2.2-1ubuntu1) ... 880s Setting up cwlformat (2022.02.18-3) ... 881s Setting up autopkgtest-satdep (0) ... 881s Processing triggers for man-db (2.12.1-2) ... 885s (Reading database ... 78518 files and directories currently installed.) 885s Removing autopkgtest-satdep (0) ... 885s autopkgtest [11:12:09]: test run-unit-test: [----------------------- 886s /tmp/autopkgtest.eeULYp/build.N7G/src/tests /tmp/autopkgtest.eeULYp/build.N7G/src 886s Testing with python3.12 in /tmp/autopkgtest.eeULYp/build.N7G/src/tests: 886s ============================= test session starts ============================== 886s platform linux -- Python 3.12.4, pytest-8.2.2, pluggy-1.5.0 -- /usr/bin/python3.12 886s cachedir: .pytest_cache 886s rootdir: /tmp/autopkgtest.eeULYp/build.N7G/src 886s collecting ... collected 3 items 886s 887s test_battery.py::test_formatting_battery FAILED [ 33%] 887s test_battery.py::test_node_conservation PASSED [ 66%] 888s test_explode.py::test_explode PASSED [100%] 888s 888s =================================== FAILURES =================================== 888s ___________________________ test_formatting_battery ____________________________ 888s 888s def test_formatting_battery(): 888s 888s path = current_path / "cwl" 888s for raw_name in path.glob("original-*"): 888s expected_name = raw_name.parent / pathlib.Path("formatted-" + "-".join(raw_name.stem.split("-")[1:]) + ".cwl") 888s formatted_cwl = cwl_format(raw_name.open("r").read()) 888s expected_raw_cwl = expected_name.open("r").read() 888s 888s > assert formatted_cwl == expected_raw_cwl 888s E assert "#!/usr/bin/e...nome_sizes'\n" == "#!/usr/bin/e...nome_sizes'\n" 888s E 888s E #!/usr/bin/env cwl-runner 888s E 888s E cwlVersion: v1.0 888s E class: Workflow 888s E label: ATAC-seq-pipeline-se 888s E doc: 'ATAC-seq pipeline - reads: SE'... 888s E 888s E ...Full output truncated (4516 lines hidden), use '-vv' to show 888s 888s test_battery.py:19: AssertionError 888s =============================== warnings summary =============================== 888s ../../../../../usr/lib/python3/dist-packages/cwlformat/formatter.py:23 888s /usr/lib/python3/dist-packages/cwlformat/formatter.py:23: DeprecationWarning: read_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. 888s key_order_dict = yaml.load(read_text("cwlformat", "keyorder.yml")) 888s 888s ../../../../../usr/lib/python3.12/importlib/resources/_legacy.py:79 888s /usr/lib/python3.12/importlib/resources/_legacy.py:79: DeprecationWarning: open_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. 888s with open_text(package, resource, encoding, errors) as fp: 888s 888s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 888s =========================== short test summary info ============================ 888s FAILED test_battery.py::test_formatting_battery - assert "#!/usr/bin/e...nome... 888s =================== 1 failed, 2 passed, 2 warnings in 1.82s ==================== 888s autopkgtest [11:12:12]: test run-unit-test: -----------------------] 889s run-unit-test FAIL non-zero exit status 1 889s autopkgtest [11:12:13]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 889s autopkgtest [11:12:13]: @@@@@@@@@@@@@@@@@@@@ summary 889s run-unit-test FAIL non-zero exit status 1 934s nova [W] Skipping flock in bos03-arm64 934s Creating nova instance adt-oracular-arm64-cwlformat-20240616-102217-juju-7f2275-prod-proposed-migration-environment-3-95dc7c53-536e-4774-b900-2b04e3f24985 from image adt/ubuntu-oracular-arm64-server-20240615.img (UUID 891f4ace-6bc2-49e5-8107-dfb2761629d0)...