0s autopkgtest [08:47:04]: starting date and time: 2024-07-21 08:47:04+0000 0s autopkgtest [08:47:04]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [08:47:04]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9d_4yg3n/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade abpoa --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.4-1 python3-stdlib-extensions/3.12.4-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-29.secgroup --name adt-oracular-arm64-abpoa-20240721-084704-juju-7f2275-prod-proposed-migration-environment-3-4162f3f8-01a0-4234-bc50-9227d17da885 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 56s autopkgtest [08:48:00]: testbed dpkg architecture: arm64 56s autopkgtest [08:48:00]: testbed apt version: 2.9.6 56s autopkgtest [08:48:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 57s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 57s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [418 kB] 57s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4092 B] 57s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [61.8 kB] 57s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 57s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [121 kB] 57s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2116 B] 57s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 57s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 57s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [499 kB] 57s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8752 B] 57s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8556 B] 57s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B] 59s Fetched 1303 kB in 1s (1644 kB/s) 59s Reading package lists... 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 63s Calculating upgrade... 63s The following packages will be upgraded: 63s libpython3-stdlib python3 python3-gdbm python3-minimal 63s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Need to get 79.0 kB of archives. 63s After this operation, 71.7 kB of additional disk space will be used. 63s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3-minimal arm64 3.12.4-1 [27.1 kB] 63s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3 arm64 3.12.4-1 [24.0 kB] 63s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libpython3-stdlib arm64 3.12.4-1 [9824 B] 63s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3-gdbm arm64 3.12.4-2 [18.0 kB] 64s Fetched 79.0 kB in 0s (169 kB/s) 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 64s Preparing to unpack .../python3-minimal_3.12.4-1_arm64.deb ... 64s Unpacking python3-minimal (3.12.4-1) over (3.12.3-0ubuntu1) ... 64s Setting up python3-minimal (3.12.4-1) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 65s Preparing to unpack .../python3_3.12.4-1_arm64.deb ... 65s Unpacking python3 (3.12.4-1) over (3.12.3-0ubuntu1) ... 65s Preparing to unpack .../libpython3-stdlib_3.12.4-1_arm64.deb ... 65s Unpacking libpython3-stdlib:arm64 (3.12.4-1) over (3.12.3-0ubuntu1) ... 65s Preparing to unpack .../python3-gdbm_3.12.4-2_arm64.deb ... 65s Unpacking python3-gdbm:arm64 (3.12.4-2) over (3.12.3-0ubuntu1) ... 65s Setting up libpython3-stdlib:arm64 (3.12.4-1) ... 65s Setting up python3 (3.12.4-1) ... 65s Setting up python3-gdbm:arm64 (3.12.4-2) ... 65s Processing triggers for man-db (2.12.1-2) ... 66s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 68s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 68s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 68s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 69s Reading package lists... 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 70s Calculating upgrade... 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s autopkgtest [08:48:18]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 74s autopkgtest [08:48:18]: @@@@@@@@@@@@@@@@@@@@ apt-source abpoa 76s Get:1 http://ftpmaster.internal/ubuntu oracular/universe abpoa 1.5.1-1build1 (dsc) [2125 B] 76s Get:2 http://ftpmaster.internal/ubuntu oracular/universe abpoa 1.5.1-1build1 (tar) [160 kB] 76s Get:3 http://ftpmaster.internal/ubuntu oracular/universe abpoa 1.5.1-1build1 (diff) [9200 B] 77s gpgv: Signature made Wed Apr 10 18:35:09 2024 UTC 77s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 77s gpgv: Can't check signature: No public key 77s dpkg-source: warning: cannot verify inline signature for ./abpoa_1.5.1-1build1.dsc: no acceptable signature found 77s autopkgtest [08:48:21]: testing package abpoa version 1.5.1-1build1 77s autopkgtest [08:48:21]: build not needed 78s autopkgtest [08:48:22]: test run-unit-test: preparing testbed 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Starting pkgProblemResolver with broken count: 0 79s Starting 2 pkgProblemResolver with broken count: 0 79s Done 80s The following additional packages will be installed: 80s abpoa fontconfig graphviz libann0 libcairo2 libcdt5 libcgraph6 libdatrie1 80s libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libice6 80s liblab-gamut1 libltdl7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 80s libpathplan4 libpixman-1-0 libsm6 libthai-data libthai0 libxaw7 80s libxcb-render0 libxcb-shm0 libxmu6 libxrender1 libxt6t64 python3-pyabpoa 80s x11-common 80s Suggested packages: 80s gsfonts graphviz-doc 80s Recommended packages: 80s fonts-liberation libgts-bin 80s The following NEW packages will be installed: 80s abpoa autopkgtest-satdep fontconfig graphviz libann0 libcairo2 libcdt5 80s libcgraph6 libdatrie1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 80s libharfbuzz0b libice6 liblab-gamut1 libltdl7 libpango-1.0-0 80s libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libsm6 80s libthai-data libthai0 libxaw7 libxcb-render0 libxcb-shm0 libxmu6 libxrender1 80s libxt6t64 python3-pyabpoa x11-common 80s 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 6412 kB/6413 kB of archives. 80s After this operation, 18.9 MB of additional disk space will be used. 80s Get:1 /tmp/autopkgtest.GjTM7P/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 80s Get:2 http://ftpmaster.internal/ubuntu oracular/universe arm64 libann0 arm64 1.1.2+doc-9build1 [25.7 kB] 80s Get:3 http://ftpmaster.internal/ubuntu oracular/universe arm64 libcdt5 arm64 2.42.4-1 [20.5 kB] 80s Get:4 http://ftpmaster.internal/ubuntu oracular/universe arm64 libcgraph6 arm64 2.42.4-1 [45.0 kB] 80s Get:5 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2build1 [154 kB] 81s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 81s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 81s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 81s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 81s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 libcairo2 arm64 1.18.0-3build1 [555 kB] 81s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libltdl7 arm64 2.4.7-7build1 [40.4 kB] 81s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 81s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 81s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB] 81s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 81s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 81s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 81s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libpango-1.0-0 arm64 1.54.0+ds-1 [230 kB] 81s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-1 [41.7 kB] 81s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-1 [27.2 kB] 81s Get:21 http://ftpmaster.internal/ubuntu oracular/universe arm64 libpathplan4 arm64 2.42.4-1 [22.7 kB] 81s Get:22 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgvc6 arm64 2.42.4-1 [692 kB] 81s Get:23 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgvpr2 arm64 2.42.4-1 [185 kB] 81s Get:24 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblab-gamut1 arm64 2.42.4-1 [1832 kB] 81s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 81s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 81s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 81s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 81s Get:29 http://ftpmaster.internal/ubuntu oracular/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 81s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 libxaw7 arm64 2:1.0.14-1build2 [183 kB] 81s Get:31 http://ftpmaster.internal/ubuntu oracular/universe arm64 graphviz arm64 2.42.4-1 [610 kB] 81s Get:32 http://ftpmaster.internal/ubuntu oracular/universe arm64 abpoa arm64 1.5.1-1build1 [130 kB] 81s Get:33 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pyabpoa arm64 1.5.1-1build1 [158 kB] 82s Fetched 6412 kB in 1s (5486 kB/s) 82s Selecting previously unselected package libann0. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78396 files and directories currently installed.) 82s Preparing to unpack .../00-libann0_1.1.2+doc-9build1_arm64.deb ... 82s Unpacking libann0 (1.1.2+doc-9build1) ... 82s Selecting previously unselected package libcdt5:arm64. 82s Preparing to unpack .../01-libcdt5_2.42.4-1_arm64.deb ... 82s Unpacking libcdt5:arm64 (2.42.4-1) ... 82s Selecting previously unselected package libcgraph6:arm64. 82s Preparing to unpack .../02-libcgraph6_2.42.4-1_arm64.deb ... 82s Unpacking libcgraph6:arm64 (2.42.4-1) ... 82s Selecting previously unselected package libgts-0.7-5t64:arm64. 82s Preparing to unpack .../03-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_arm64.deb ... 82s Unpacking libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 82s Selecting previously unselected package libpixman-1-0:arm64. 82s Preparing to unpack .../04-libpixman-1-0_0.42.2-1build1_arm64.deb ... 82s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 82s Selecting previously unselected package libxcb-render0:arm64. 82s Preparing to unpack .../05-libxcb-render0_1.17.0-2_arm64.deb ... 82s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 82s Selecting previously unselected package libxcb-shm0:arm64. 82s Preparing to unpack .../06-libxcb-shm0_1.17.0-2_arm64.deb ... 82s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 82s Selecting previously unselected package libxrender1:arm64. 82s Preparing to unpack .../07-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 82s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 82s Selecting previously unselected package libcairo2:arm64. 82s Preparing to unpack .../08-libcairo2_1.18.0-3build1_arm64.deb ... 82s Unpacking libcairo2:arm64 (1.18.0-3build1) ... 82s Selecting previously unselected package libltdl7:arm64. 82s Preparing to unpack .../09-libltdl7_2.4.7-7build1_arm64.deb ... 82s Unpacking libltdl7:arm64 (2.4.7-7build1) ... 82s Selecting previously unselected package fontconfig. 82s Preparing to unpack .../10-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 82s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 82s Selecting previously unselected package libgraphite2-3:arm64. 82s Preparing to unpack .../11-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 82s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 82s Selecting previously unselected package libharfbuzz0b:arm64. 82s Preparing to unpack .../12-libharfbuzz0b_8.3.0-2build2_arm64.deb ... 82s Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ... 82s Selecting previously unselected package libthai-data. 82s Preparing to unpack .../13-libthai-data_0.1.29-2build1_all.deb ... 82s Unpacking libthai-data (0.1.29-2build1) ... 82s Selecting previously unselected package libdatrie1:arm64. 82s Preparing to unpack .../14-libdatrie1_0.2.13-3build1_arm64.deb ... 82s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 82s Selecting previously unselected package libthai0:arm64. 82s Preparing to unpack .../15-libthai0_0.1.29-2build1_arm64.deb ... 82s Unpacking libthai0:arm64 (0.1.29-2build1) ... 82s Selecting previously unselected package libpango-1.0-0:arm64. 82s Preparing to unpack .../16-libpango-1.0-0_1.54.0+ds-1_arm64.deb ... 82s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-1) ... 82s Selecting previously unselected package libpangoft2-1.0-0:arm64. 82s Preparing to unpack .../17-libpangoft2-1.0-0_1.54.0+ds-1_arm64.deb ... 82s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ... 82s Selecting previously unselected package libpangocairo-1.0-0:arm64. 82s Preparing to unpack .../18-libpangocairo-1.0-0_1.54.0+ds-1_arm64.deb ... 82s Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ... 82s Selecting previously unselected package libpathplan4:arm64. 82s Preparing to unpack .../19-libpathplan4_2.42.4-1_arm64.deb ... 82s Unpacking libpathplan4:arm64 (2.42.4-1) ... 82s Selecting previously unselected package libgvc6. 82s Preparing to unpack .../20-libgvc6_2.42.4-1_arm64.deb ... 82s Unpacking libgvc6 (2.42.4-1) ... 82s Selecting previously unselected package libgvpr2:arm64. 82s Preparing to unpack .../21-libgvpr2_2.42.4-1_arm64.deb ... 82s Unpacking libgvpr2:arm64 (2.42.4-1) ... 82s Selecting previously unselected package liblab-gamut1:arm64. 83s Preparing to unpack .../22-liblab-gamut1_2.42.4-1_arm64.deb ... 83s Unpacking liblab-gamut1:arm64 (2.42.4-1) ... 83s Selecting previously unselected package x11-common. 83s Preparing to unpack .../23-x11-common_1%3a7.7+23ubuntu3_all.deb ... 83s Unpacking x11-common (1:7.7+23ubuntu3) ... 83s Selecting previously unselected package libice6:arm64. 83s Preparing to unpack .../24-libice6_2%3a1.0.10-1build3_arm64.deb ... 83s Unpacking libice6:arm64 (2:1.0.10-1build3) ... 83s Selecting previously unselected package libsm6:arm64. 83s Preparing to unpack .../25-libsm6_2%3a1.2.3-1build3_arm64.deb ... 83s Unpacking libsm6:arm64 (2:1.2.3-1build3) ... 83s Selecting previously unselected package libxt6t64:arm64. 83s Preparing to unpack .../26-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 83s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 83s Selecting previously unselected package libxmu6:arm64. 83s Preparing to unpack .../27-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 83s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 83s Selecting previously unselected package libxaw7:arm64. 83s Preparing to unpack .../28-libxaw7_2%3a1.0.14-1build2_arm64.deb ... 83s Unpacking libxaw7:arm64 (2:1.0.14-1build2) ... 83s Selecting previously unselected package graphviz. 83s Preparing to unpack .../29-graphviz_2.42.4-1_arm64.deb ... 83s Unpacking graphviz (2.42.4-1) ... 83s Selecting previously unselected package abpoa. 83s Preparing to unpack .../30-abpoa_1.5.1-1build1_arm64.deb ... 83s Unpacking abpoa (1.5.1-1build1) ... 83s Selecting previously unselected package python3-pyabpoa. 83s Preparing to unpack .../31-python3-pyabpoa_1.5.1-1build1_arm64.deb ... 83s Unpacking python3-pyabpoa (1.5.1-1build1) ... 83s Selecting previously unselected package autopkgtest-satdep. 83s Preparing to unpack .../32-1-autopkgtest-satdep.deb ... 83s Unpacking autopkgtest-satdep (0) ... 83s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 83s Setting up libpixman-1-0:arm64 (0.42.2-1build1) ... 83s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 85s Regenerating fonts cache... done. 85s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 85s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 85s Setting up python3-pyabpoa (1.5.1-1build1) ... 85s Setting up libxcb-render0:arm64 (1.17.0-2) ... 85s Setting up liblab-gamut1:arm64 (2.42.4-1) ... 85s Setting up x11-common (1:7.7+23ubuntu3) ... 85s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 85s Setting up libcairo2:arm64 (1.18.0-3build1) ... 85s Setting up libpathplan4:arm64 (2.42.4-1) ... 85s Setting up libann0 (1.1.2+doc-9build1) ... 85s Setting up libltdl7:arm64 (2.4.7-7build1) ... 85s Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ... 85s Setting up libthai-data (0.1.29-2build1) ... 85s Setting up libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 85s Setting up libcdt5:arm64 (2.42.4-1) ... 85s Setting up libcgraph6:arm64 (2.42.4-1) ... 85s Setting up libice6:arm64 (2:1.0.10-1build3) ... 85s Setting up libthai0:arm64 (0.1.29-2build1) ... 85s Setting up libgvpr2:arm64 (2.42.4-1) ... 85s Setting up libsm6:arm64 (2:1.2.3-1build3) ... 85s Setting up libpango-1.0-0:arm64 (1.54.0+ds-1) ... 85s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 85s Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ... 85s Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ... 85s Setting up libxmu6:arm64 (2:1.1.3-3build2) ... 85s Setting up libxaw7:arm64 (2:1.0.14-1build2) ... 85s Setting up libgvc6 (2.42.4-1) ... 86s Setting up graphviz (2.42.4-1) ... 86s Setting up abpoa (1.5.1-1build1) ... 86s Setting up autopkgtest-satdep (0) ... 86s Processing triggers for man-db (2.12.1-2) ... 86s Processing triggers for libc-bin (2.39-0ubuntu9) ... 90s (Reading database ... 78752 files and directories currently installed.) 90s Removing autopkgtest-satdep (0) ... 90s autopkgtest [08:48:34]: test run-unit-test: [----------------------- 91s + for SIMDE in avx2 avx sse4.1 ssse3 sse3 generic dispatch 91s + '[' avx2 = dispatch ']' 91s + '[' avx2 = generic ']' 91s + grep -q avx2 /proc/cpuinfo 91s + continue 91s + for SIMDE in avx2 avx sse4.1 ssse3 sse3 generic dispatch 91s + '[' avx = dispatch ']' 91s + '[' avx = generic ']' 91s + grep -q avx /proc/cpuinfo 91s + continue 91s + for SIMDE in avx2 avx sse4.1 ssse3 sse3 generic dispatch 91s + '[' sse4.1 = dispatch ']' 91s + '[' sse4.1 = generic ']' 91s + grep -q sse4.1 /proc/cpuinfo 91s + continue 91s + for SIMDE in avx2 avx sse4.1 ssse3 sse3 generic dispatch 91s + '[' ssse3 = dispatch ']' 91s + '[' ssse3 = generic ']' 91s + grep -q ssse3 /proc/cpuinfo 91s + continue 91s + for SIMDE in avx2 avx sse4.1 ssse3 sse3 generic dispatch 91s + '[' sse3 = dispatch ']' 91s + '[' sse3 = generic ']' 91s + grep -q sse3 /proc/cpuinfo 91s + continue 91s + for SIMDE in avx2 avx sse4.1 ssse3 sse3 generic dispatch 91s + '[' generic = dispatch ']' 91s + '[' generic = generic ']' 91s + command -v abpoa.generic 91s + BINARY=abpoa.generic 91s + abpoa.generic ./test_data/seq.fa 91s [main] CMD: abpoa.generic ./test_data/seq.fa 91s [abpoa_main] Real time: 0.002 sec; CPU: 0.007 sec; Peak RSS: 0.002 GB. 91s + diff - cons.fa 91s + abpoa.generic ./test_data/heter.fa 91s [main] CMD: abpoa.generic ./test_data/heter.fa 91s [abpoa_main] Real time: 0.087 sec; CPU: 0.088 sec; Peak RSS: 0.009 GB. 91s + abpoa.generic -r1 ./test_data/seq.fa 91s [main] CMD: abpoa.generic -r1 ./test_data/seq.fa 91s [abpoa_main] Real time: 0.005 sec; CPU: 0.006 sec; Peak RSS: 0.002 GB. 91s + diff - out.msa 91s + abpoa.generic -r2 ./test_data/seq.fa 91s [main] CMD: abpoa.generic -r2 ./test_data/seq.fa 91s [abpoa_main] Real time: 0.001 sec; CPU: 0.002 sec; Peak RSS: 0.002 GB. 91s + diff - out_cons.msa 91s + abpoa.generic -r3 ./test_data/seq.fa 91s [main] CMD: abpoa.generic -r3 ./test_data/seq.fa 91s [abpoa_main] Real time: 0.001 sec; CPU: 0.002 sec; Peak RSS: 0.002 GB. 91s + diff - out.gfa 91s + abpoa.generic -r4 ./test_data/seq.fa 91s [main] CMD: abpoa.generic -r4 ./test_data/seq.fa 91s [abpoa_main] Real time: 0.001 sec; CPU: 0.002 sec; Peak RSS: 0.002 GB. 91s + diff - out4.gfa 91s + cp out.gfa in.gfa 91s + cp out.msa in.msa 91s + abpoa.generic -i in.gfa ./test_data/seq.fa -r3 91s [main] CMD: abpoa.generic -i in.gfa -r3 ./test_data/seq.fa 91s [abpoa_main] Real time: 0.001 sec; CPU: 0.002 sec; Peak RSS: 0.002 GB. 91s + diff - out.gfa 91s + abpoa.generic -i in.msa ./test_data/seq.fa -r1 91s [main] CMD: abpoa.generic -i in.msa -r1 ./test_data/seq.fa 91s [abpoa_main] Real time: 0.001 sec; CPU: 0.002 sec; Peak RSS: 0.002 GB. 91s + diff - out.msa 91s + abpoa.generic ./test_data/seq.fa -g poa.png 91s [main] CMD: abpoa.generic -g poa.png ./test_data/seq.fa 91s [abpoa_main] Real time: 0.606 sec; CPU: 0.002 sec; Peak RSS: 0.002 GB. 91s + diff - cons.fa 91s + abpoa.generic ./test_data/heter.fa -d2 91s [main] CMD: abpoa.generic -d2 ./test_data/heter.fa 91s [abpoa_main] Real time: 0.099 sec; CPU: 0.100 sec; Peak RSS: 0.009 GB. 91s >Consensus_sequence 91s CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCATCCCCACCGCCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC 91s + for SIMDE in avx2 avx sse4.1 ssse3 sse3 generic dispatch 91s + '[' dispatch = dispatch ']' 91s + BINARY=abpoa 91s + abpoa ./test_data/seq.fa 91s [main] CMD: /usr/bin/abpoa.generic ./test_data/seq.fa 91s [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. 91s + diff - cons.fa 91s + abpoa ./test_data/heter.fa 91s [main] CMD: /usr/bin/abpoa.generic ./test_data/heter.fa 92s [abpoa_main] Real time: 0.088 sec; CPU: 0.090 sec; Peak RSS: 0.009 GB. 92s + abpoa -r1 ./test_data/seq.fa 92s [main] CMD: /usr/bin/abpoa.generic -r1 ./test_data/seq.fa 92s [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. 92s + diff - out.msa 92s + abpoa -r2 ./test_data/seq.fa 92s [main] CMD: /usr/bin/abpoa.generic -r2 ./test_data/seq.fa 92s [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. 92s + diff - out_cons.msa 92s + abpoa -r3 ./test_data/seq.fa 92s [main] CMD: /usr/bin/abpoa.generic -r3 ./test_data/seq.fa 92s [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. 92s + diff - out.gfa 92s + abpoa -r4 ./test_data/seq.fa 92s [main] CMD: /usr/bin/abpoa.generic -r4 ./test_data/seq.fa 92s [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. 92s + diff - out4.gfa 92s + cp out.gfa in.gfa 92s + cp out.msa in.msa 92s + abpoa -i in.gfa ./test_data/seq.fa -r3 92s [main] CMD: /usr/bin/abpoa.generic -i in.gfa -r3 ./test_data/seq.fa 92s [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. 92s + diff - out.gfa 92s + abpoa -i in.msa ./test_data/seq.fa -r1 92s [main] CMD: /usr/bin/abpoa.generic -i in.msa -r1 ./test_data/seq.fa 92s [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. 92s + diff - out.msa 92s + abpoa ./test_data/seq.fa -g poa.png 92s [main] CMD: /usr/bin/abpoa.generic -g poa.png ./test_data/seq.fa 92s [abpoa_main] Real time: 0.473 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. 92s + diff - cons.fa 92s + abpoa ./test_data/heter.fa -d2 92s [main] CMD: /usr/bin/abpoa.generic -d2 ./test_data/heter.fa 92s [abpoa_main] Real time: 0.089 sec; CPU: 0.091 sec; Peak RSS: 0.009 GB.>Consensus_sequence 92s CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCATCCCCACCGCCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC 92s 93s autopkgtest [08:48:37]: test run-unit-test: -----------------------] 93s autopkgtest [08:48:37]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 93s run-unit-test PASS 93s autopkgtest [08:48:37]: test autodep8-python3: preparing testbed 152s autopkgtest [08:49:36]: testbed dpkg architecture: arm64 153s autopkgtest [08:49:37]: testbed apt version: 2.9.6 153s autopkgtest [08:49:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 153s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 153s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 153s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [61.8 kB] 153s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4092 B] 153s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [418 kB] 153s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [121 kB] 153s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2116 B] 153s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 153s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 153s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [499 kB] 154s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8752 B] 154s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [8556 B] 154s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B] 156s Fetched 1303 kB in 1s (1568 kB/s) 156s Reading package lists... 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Calculating upgrade... 160s The following packages will be upgraded: 160s libpython3-stdlib python3 python3-gdbm python3-minimal 160s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 79.0 kB of archives. 160s After this operation, 71.7 kB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3-minimal arm64 3.12.4-1 [27.1 kB] 160s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3 arm64 3.12.4-1 [24.0 kB] 160s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 libpython3-stdlib arm64 3.12.4-1 [9824 B] 160s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3-gdbm arm64 3.12.4-2 [18.0 kB] 161s Fetched 79.0 kB in 0s (198 kB/s) 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 161s Preparing to unpack .../python3-minimal_3.12.4-1_arm64.deb ... 161s Unpacking python3-minimal (3.12.4-1) over (3.12.3-0ubuntu1) ... 161s Setting up python3-minimal (3.12.4-1) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78393 files and directories currently installed.) 161s Preparing to unpack .../python3_3.12.4-1_arm64.deb ... 162s Unpacking python3 (3.12.4-1) over (3.12.3-0ubuntu1) ... 162s Preparing to unpack .../libpython3-stdlib_3.12.4-1_arm64.deb ... 162s Unpacking libpython3-stdlib:arm64 (3.12.4-1) over (3.12.3-0ubuntu1) ... 162s Preparing to unpack .../python3-gdbm_3.12.4-2_arm64.deb ... 162s Unpacking python3-gdbm:arm64 (3.12.4-2) over (3.12.3-0ubuntu1) ... 162s Setting up libpython3-stdlib:arm64 (3.12.4-1) ... 162s Setting up python3 (3.12.4-1) ... 162s Setting up python3-gdbm:arm64 (3.12.4-2) ... 162s Processing triggers for man-db (2.12.1-2) ... 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 164s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 164s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 164s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 164s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 166s Reading package lists... 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 167s Calculating upgrade... 167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s Starting pkgProblemResolver with broken count: 0 173s Starting 2 pkgProblemResolver with broken count: 0 173s Done 173s The following additional packages will be installed: 173s python3-all python3-pyabpoa 173s The following NEW packages will be installed: 173s autopkgtest-satdep python3-all python3-pyabpoa 173s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 173s Need to get 159 kB/160 kB of archives. 173s After this operation, 428 kB of additional disk space will be used. 173s Get:1 /tmp/autopkgtest.GjTM7P/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 174s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 python3-all arm64 3.12.4-1 [882 B] 174s Get:3 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pyabpoa arm64 1.5.1-1build1 [158 kB] 174s Fetched 159 kB in 0s (328 kB/s) 174s Selecting previously unselected package python3-all. 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78396 files and directories currently installed.) 175s Preparing to unpack .../python3-all_3.12.4-1_arm64.deb ... 175s Unpacking python3-all (3.12.4-1) ... 175s Selecting previously unselected package python3-pyabpoa. 175s Preparing to unpack .../python3-pyabpoa_1.5.1-1build1_arm64.deb ... 175s Unpacking python3-pyabpoa (1.5.1-1build1) ... 175s Selecting previously unselected package autopkgtest-satdep. 175s Preparing to unpack .../2-autopkgtest-satdep.deb ... 175s Unpacking autopkgtest-satdep (0) ... 175s Setting up python3-pyabpoa (1.5.1-1build1) ... 175s Setting up python3-all (3.12.4-1) ... 175s Setting up autopkgtest-satdep (0) ... 177s (Reading database ... 78405 files and directories currently installed.) 177s Removing autopkgtest-satdep (0) ... 179s autopkgtest [08:50:03]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyabpoa; print(pyabpoa)" ; done 179s autopkgtest [08:50:03]: test autodep8-python3: [----------------------- 179s Testing with python3.12: 179s 180s autopkgtest [08:50:04]: test autodep8-python3: -----------------------] 180s autopkgtest [08:50:04]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 180s autodep8-python3 PASS (superficial) 181s autopkgtest [08:50:05]: @@@@@@@@@@@@@@@@@@@@ summary 181s run-unit-test PASS 181s autodep8-python3 PASS (superficial) 192s nova [W] Skipping flock in bos03-arm64 192s Creating nova instance adt-oracular-arm64-abpoa-20240721-084704-juju-7f2275-prod-proposed-migration-environment-3-4162f3f8-01a0-4234-bc50-9227d17da885 from image adt/ubuntu-oracular-arm64-server-20240721.img (UUID 82bde252-f2f6-4a5f-8912-308e3b0a85c9)... 192s nova [W] Skipping flock in bos03-arm64 192s Creating nova instance adt-oracular-arm64-abpoa-20240721-084704-juju-7f2275-prod-proposed-migration-environment-3-4162f3f8-01a0-4234-bc50-9227d17da885 from image adt/ubuntu-oracular-arm64-server-20240721.img (UUID 82bde252-f2f6-4a5f-8912-308e3b0a85c9)...