4s autopkgtest [15:48:14]: starting date and time: 2024-07-08 15:48:14+0000 4s autopkgtest [15:48:14]: git checkout: fd3bed09 nova: allow more retries for quota issues 4s autopkgtest [15:48:14]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jy4l89mc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mpi-defaults --apt-upgrade abinit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mpi-defaults/1.17 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-41.secgroup --name adt-oracular-arm64-abinit-20240708-154809-juju-7f2275-prod-proposed-migration-environment-3-f0672dcb-e900-40df-9cd8-80f08e26e199 --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 218s autopkgtest [15:51:48]: testbed dpkg architecture: arm64 228s autopkgtest [15:51:58]: testbed apt version: 2.9.6 228s autopkgtest [15:51:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 236s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 239s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3336 B] 239s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [360 kB] 239s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB] 239s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 239s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [95.9 kB] 239s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [2576 B] 239s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 239s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 239s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [365 kB] 239s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [8844 B] 239s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [7596 B] 239s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [276 B] 244s Fetched 1073 kB in 5s (216 kB/s) 244s Reading package lists... 250s Reading package lists... 250s Building dependency tree... 250s Reading state information... 251s Calculating upgrade... 252s The following packages will be upgraded: 252s libnetplan1 netplan-generator netplan.io python3-netplan 253s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 253s Need to get 269 kB of archives. 253s After this operation, 1024 B of additional disk space will be used. 253s Get:1 http://ftpmaster.internal/ubuntu oracular/main arm64 netplan-generator arm64 1.0.1-1ubuntu2 [59.2 kB] 253s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-netplan arm64 1.0.1-1ubuntu2 [21.7 kB] 253s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 netplan.io arm64 1.0.1-1ubuntu2 [66.3 kB] 253s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 libnetplan1 arm64 1.0.1-1ubuntu2 [122 kB] 256s Fetched 269 kB in 1s (472 kB/s) 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78372 files and directories currently installed.) 257s Preparing to unpack .../netplan-generator_1.0.1-1ubuntu2_arm64.deb ... 257s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 257s Unpacking netplan-generator (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 258s Preparing to unpack .../python3-netplan_1.0.1-1ubuntu2_arm64.deb ... 258s Unpacking python3-netplan (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 259s Preparing to unpack .../netplan.io_1.0.1-1ubuntu2_arm64.deb ... 259s Unpacking netplan.io (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 261s Preparing to unpack .../libnetplan1_1.0.1-1ubuntu2_arm64.deb ... 261s Unpacking libnetplan1:arm64 (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 262s Setting up libnetplan1:arm64 (1.0.1-1ubuntu2) ... 262s Setting up python3-netplan (1.0.1-1ubuntu2) ... 262s Setting up netplan-generator (1.0.1-1ubuntu2) ... 263s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 264s Setting up netplan.io (1.0.1-1ubuntu2) ... 264s Processing triggers for libc-bin (2.39-0ubuntu9) ... 264s Processing triggers for man-db (2.12.1-2) ... 265s Processing triggers for dbus (1.14.10-4ubuntu4) ... 266s Reading package lists... 266s Building dependency tree... 266s Reading state information... 267s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 269s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 269s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 269s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 269s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 276s Reading package lists...Reading package lists... 276s 277s Building dependency tree... 277s Reading state information... 277s Calculating upgrade... 278s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 278s Reading package lists... 278s Building dependency tree... 278s Reading state information... 279s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 312s autopkgtest [15:53:22]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 312s autopkgtest [15:53:22]: @@@@@@@@@@@@@@@@@@@@ apt-source abinit 334s Get:1 http://ftpmaster.internal/ubuntu oracular/universe abinit 9.10.4-2ubuntu3 (dsc) [2571 B] 334s Get:2 http://ftpmaster.internal/ubuntu oracular/universe abinit 9.10.4-2ubuntu3 (tar) [131 MB] 334s Get:3 http://ftpmaster.internal/ubuntu oracular/universe abinit 9.10.4-2ubuntu3 (diff) [15.1 kB] 334s gpgv: Signature made Mon Apr 1 04:59:04 2024 UTC 334s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 334s gpgv: Can't check signature: No public key 334s dpkg-source: warning: cannot verify inline signature for ./abinit_9.10.4-2ubuntu3.dsc: no acceptable signature found 338s autopkgtest [15:53:48]: testing package abinit version 9.10.4-2ubuntu3 339s autopkgtest [15:53:49]: build not needed 459s autopkgtest [15:55:49]: test run-unit-test: preparing testbed 460s Reading package lists... 461s Building dependency tree... 461s Reading state information... 461s Starting pkgProblemResolver with broken count: 0 461s Starting 2 pkgProblemResolver with broken count: 0 461s Done 462s The following additional packages will be installed: 462s abinit abinit-data abinit-doc libaec0 libatomic1 libblas3 462s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libhdf5-103-1t64 462s libhdf5-hl-100t64 libhwloc-plugins libhwloc15 liblapack3 libmunge2 462s libnetcdf19t64 libnetcdff7 libopenmpi3t64 libpciaccess0 libpmix2t64 462s librdmacm1t64 libsz2 libucx0 libxc9 libxnvctrl0 mpi-default-bin 462s ocl-icd-libopencl1 openmpi-bin openmpi-common python3-dateutil python3-numpy 462s python3-pandas python3-pandas-lib 462s Suggested packages: 462s opencl-icd gfortran | fortran-compiler gcc gfortran python-numpy-doc 462s python3-dev python3-pytest python-pandas-doc python3-statsmodels 462s Recommended packages: 462s python3-scipy python3-matplotlib python3-bottleneck python3-numexpr 462s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 462s python3-tables 462s The following NEW packages will be installed: 462s abinit abinit-data abinit-doc autopkgtest-satdep libaec0 libatomic1 libblas3 462s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libhdf5-103-1t64 462s libhdf5-hl-100t64 libhwloc-plugins libhwloc15 liblapack3 libmunge2 462s libnetcdf19t64 libnetcdff7 libopenmpi3t64 libpciaccess0 libpmix2t64 462s librdmacm1t64 libsz2 libucx0 libxc9 libxnvctrl0 mpi-default-bin 462s ocl-icd-libopencl1 openmpi-bin openmpi-common python3-dateutil python3-numpy 462s python3-pandas python3-pandas-lib 462s 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. 462s Need to get 92.0 MB/92.0 MB of archives. 462s After this operation, 420 MB of additional disk space will be used. 462s Get:1 /tmp/autopkgtest.BFqsGJ/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B] 462s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] 463s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libgfortran5 arm64 14.1.0-1ubuntu1 [443 kB] 463s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] 463s Get:5 http://ftpmaster.internal/ubuntu oracular/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 463s Get:6 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 463s Get:7 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu4 [1192 kB] 463s Get:8 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu4 [55.8 kB] 463s Get:9 http://ftpmaster.internal/ubuntu oracular/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6 [470 kB] 463s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 libnetcdff7 arm64 4.6.0+really4.5.4+ds-3build2 [129 kB] 463s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 463s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14.1.0-1ubuntu1 [11.4 kB] 463s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 librdmacm1t64 arm64 52.0-2 [70.8 kB] 463s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 libfabric1 arm64 1.17.0-3build2 [541 kB] 463s Get:15 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhwloc15 arm64 2.10.0-1build1 [159 kB] 463s Get:16 http://ftpmaster.internal/ubuntu oracular/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB] 463s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 463s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 463s Get:19 http://ftpmaster.internal/ubuntu oracular/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 463s Get:20 http://ftpmaster.internal/ubuntu oracular/universe arm64 libhwloc-plugins arm64 2.10.0-1build1 [15.7 kB] 463s Get:21 http://ftpmaster.internal/ubuntu oracular/universe arm64 libpmix2t64 arm64 5.0.1-4.1build1 [655 kB] 463s Get:22 http://ftpmaster.internal/ubuntu oracular/universe arm64 libucx0 arm64 1.16.0+ds-5ubuntu1 [1074 kB] 463s Get:23 http://ftpmaster.internal/ubuntu oracular/universe arm64 libopenmpi3t64 arm64 4.1.6-7ubuntu2 [2463 kB] 463s Get:24 http://ftpmaster.internal/ubuntu oracular/universe arm64 libxc9 arm64 5.2.3-1ubuntu1 [4109 kB] 463s Get:25 http://ftpmaster.internal/ubuntu oracular/universe arm64 openmpi-common all 4.1.6-7ubuntu2 [170 kB] 463s Get:26 http://ftpmaster.internal/ubuntu oracular/universe arm64 openmpi-bin arm64 4.1.6-7ubuntu2 [113 kB] 463s Get:27 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 mpi-default-bin arm64 1.17 [2296 B] 463s Get:28 http://ftpmaster.internal/ubuntu oracular/universe arm64 abinit arm64 9.10.4-2ubuntu3 [30.4 MB] 464s Get:29 http://ftpmaster.internal/ubuntu oracular/universe arm64 abinit-data all 9.10.4-2ubuntu3 [34.2 MB] 465s Get:30 http://ftpmaster.internal/ubuntu oracular/universe arm64 abinit-doc all 9.10.4-2ubuntu3 [2301 kB] 465s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 465s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [3565 kB] 465s Get:33 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [4178 kB] 465s Get:34 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 466s Fetched 92.0 MB in 3s (27.8 MB/s) 466s Selecting previously unselected package libblas3:arm64. 466s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78372 files and directories currently installed.) 466s Preparing to unpack .../00-libblas3_3.12.0-3build1_arm64.deb ... 466s Unpacking libblas3:arm64 (3.12.0-3build1) ... 466s Selecting previously unselected package libgfortran5:arm64. 466s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_arm64.deb ... 466s Unpacking libgfortran5:arm64 (14.1.0-1ubuntu1) ... 466s Selecting previously unselected package liblapack3:arm64. 466s Preparing to unpack .../02-liblapack3_3.12.0-3build1_arm64.deb ... 466s Unpacking liblapack3:arm64 (3.12.0-3build1) ... 466s Selecting previously unselected package libaec0:arm64. 466s Preparing to unpack .../03-libaec0_1.1.3-1_arm64.deb ... 466s Unpacking libaec0:arm64 (1.1.3-1) ... 466s Selecting previously unselected package libsz2:arm64. 466s Preparing to unpack .../04-libsz2_1.1.3-1_arm64.deb ... 466s Unpacking libsz2:arm64 (1.1.3-1) ... 466s Selecting previously unselected package libhdf5-103-1t64:arm64. 466s Preparing to unpack .../05-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 466s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 467s Selecting previously unselected package libhdf5-hl-100t64:arm64. 467s Preparing to unpack .../06-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_arm64.deb ... 467s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 467s Selecting previously unselected package libnetcdf19t64:arm64. 467s Preparing to unpack .../07-libnetcdf19t64_1%3a4.9.2-6_arm64.deb ... 467s Unpacking libnetcdf19t64:arm64 (1:4.9.2-6) ... 467s Selecting previously unselected package libnetcdff7:arm64. 467s Preparing to unpack .../08-libnetcdff7_4.6.0+really4.5.4+ds-3build2_arm64.deb ... 467s Unpacking libnetcdff7:arm64 (4.6.0+really4.5.4+ds-3build2) ... 467s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 467s Preparing to unpack .../09-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 467s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 467s Selecting previously unselected package libatomic1:arm64. 467s Preparing to unpack .../10-libatomic1_14.1.0-1ubuntu1_arm64.deb ... 467s Unpacking libatomic1:arm64 (14.1.0-1ubuntu1) ... 467s Selecting previously unselected package librdmacm1t64:arm64. 467s Preparing to unpack .../11-librdmacm1t64_52.0-2_arm64.deb ... 467s Unpacking librdmacm1t64:arm64 (52.0-2) ... 467s Selecting previously unselected package libfabric1:arm64. 467s Preparing to unpack .../12-libfabric1_1.17.0-3build2_arm64.deb ... 467s Unpacking libfabric1:arm64 (1.17.0-3build2) ... 467s Selecting previously unselected package libhwloc15:arm64. 468s Preparing to unpack .../13-libhwloc15_2.10.0-1build1_arm64.deb ... 468s Unpacking libhwloc15:arm64 (2.10.0-1build1) ... 468s Selecting previously unselected package libmunge2:arm64. 468s Preparing to unpack .../14-libmunge2_0.5.15-4build1_arm64.deb ... 468s Unpacking libmunge2:arm64 (0.5.15-4build1) ... 468s Selecting previously unselected package libpciaccess0:arm64. 468s Preparing to unpack .../15-libpciaccess0_0.17-3build1_arm64.deb ... 468s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 469s Selecting previously unselected package libxnvctrl0:arm64. 469s Preparing to unpack .../16-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 469s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 469s Selecting previously unselected package ocl-icd-libopencl1:arm64. 469s Preparing to unpack .../17-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 469s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 469s Selecting previously unselected package libhwloc-plugins:arm64. 469s Preparing to unpack .../18-libhwloc-plugins_2.10.0-1build1_arm64.deb ... 469s Unpacking libhwloc-plugins:arm64 (2.10.0-1build1) ... 469s Selecting previously unselected package libpmix2t64:arm64. 469s Preparing to unpack .../19-libpmix2t64_5.0.1-4.1build1_arm64.deb ... 469s Unpacking libpmix2t64:arm64 (5.0.1-4.1build1) ... 469s Selecting previously unselected package libucx0:arm64. 470s Preparing to unpack .../20-libucx0_1.16.0+ds-5ubuntu1_arm64.deb ... 470s Unpacking libucx0:arm64 (1.16.0+ds-5ubuntu1) ... 470s Selecting previously unselected package libopenmpi3t64:arm64. 470s Preparing to unpack .../21-libopenmpi3t64_4.1.6-7ubuntu2_arm64.deb ... 470s Unpacking libopenmpi3t64:arm64 (4.1.6-7ubuntu2) ... 470s Selecting previously unselected package libxc9:arm64. 471s Preparing to unpack .../22-libxc9_5.2.3-1ubuntu1_arm64.deb ... 471s Unpacking libxc9:arm64 (5.2.3-1ubuntu1) ... 471s Selecting previously unselected package openmpi-common. 472s Preparing to unpack .../23-openmpi-common_4.1.6-7ubuntu2_all.deb ... 472s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 472s Selecting previously unselected package openmpi-bin. 473s Preparing to unpack .../24-openmpi-bin_4.1.6-7ubuntu2_arm64.deb ... 473s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 473s Selecting previously unselected package mpi-default-bin. 473s Preparing to unpack .../25-mpi-default-bin_1.17_arm64.deb ... 473s Unpacking mpi-default-bin (1.17) ... 473s Selecting previously unselected package abinit. 473s Preparing to unpack .../26-abinit_9.10.4-2ubuntu3_arm64.deb ... 473s Unpacking abinit (9.10.4-2ubuntu3) ... 474s Selecting previously unselected package abinit-data. 474s Preparing to unpack .../27-abinit-data_9.10.4-2ubuntu3_all.deb ... 474s Unpacking abinit-data (9.10.4-2ubuntu3) ... 475s Selecting previously unselected package abinit-doc. 475s Preparing to unpack .../28-abinit-doc_9.10.4-2ubuntu3_all.deb ... 475s Unpacking abinit-doc (9.10.4-2ubuntu3) ... 475s Selecting previously unselected package python3-dateutil. 475s Preparing to unpack .../29-python3-dateutil_2.9.0-2_all.deb ... 475s Unpacking python3-dateutil (2.9.0-2) ... 475s Selecting previously unselected package python3-numpy. 476s Preparing to unpack .../30-python3-numpy_1%3a1.26.4+ds-10_arm64.deb ... 476s Unpacking python3-numpy (1:1.26.4+ds-10) ... 476s Selecting previously unselected package python3-pandas-lib:arm64. 476s Preparing to unpack .../31-python3-pandas-lib_2.1.4+dfsg-8_arm64.deb ... 476s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 476s Selecting previously unselected package python3-pandas. 476s Preparing to unpack .../32-python3-pandas_2.1.4+dfsg-8_all.deb ... 476s Unpacking python3-pandas (2.1.4+dfsg-8) ... 476s Selecting previously unselected package autopkgtest-satdep. 477s Preparing to unpack .../33-1-autopkgtest-satdep.deb ... 477s Unpacking autopkgtest-satdep (0) ... 477s Setting up libpciaccess0:arm64 (0.17-3build1) ... 477s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 477s Setting up abinit-doc (9.10.4-2ubuntu3) ... 477s Setting up abinit-data (9.10.4-2ubuntu3) ... 477s Setting up libaec0:arm64 (1.1.3-1) ... 477s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 477s Setting up libblas3:arm64 (3.12.0-3build1) ... 477s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 477s Setting up libmunge2:arm64 (0.5.15-4build1) ... 477s Setting up libhwloc15:arm64 (2.10.0-1build1) ... 477s Setting up libatomic1:arm64 (14.1.0-1ubuntu1) ... 477s Setting up libgfortran5:arm64 (14.1.0-1ubuntu1) ... 477s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 477s Setting up openmpi-common (4.1.6-7ubuntu2) ... 477s Setting up librdmacm1t64:arm64 (52.0-2) ... 477s Setting up python3-dateutil (2.9.0-2) ... 477s Setting up libsz2:arm64 (1.1.3-1) ... 477s Setting up libxc9:arm64 (5.2.3-1ubuntu1) ... 477s Setting up libfabric1:arm64 (1.17.0-3build2) ... 477s Setting up libucx0:arm64 (1.16.0+ds-5ubuntu1) ... 477s Setting up liblapack3:arm64 (3.12.0-3build1) ... 477s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 477s Setting up libhwloc-plugins:arm64 (2.10.0-1build1) ... 477s Setting up libpmix2t64:arm64 (5.0.1-4.1build1) ... 477s Setting up python3-numpy (1:1.26.4+ds-10) ... 479s Setting up libopenmpi3t64:arm64 (4.1.6-7ubuntu2) ... 479s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 479s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 479s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 479s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 479s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu4) ... 479s Setting up libnetcdf19t64:arm64 (1:4.9.2-6) ... 479s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... 479s Setting up mpi-default-bin (1.17) ... 480s Setting up python3-pandas (2.1.4+dfsg-8) ... 484s Setting up libnetcdff7:arm64 (4.6.0+really4.5.4+ds-3build2) ... 484s Setting up abinit (9.10.4-2ubuntu3) ... 484s Setting up autopkgtest-satdep (0) ... 484s Processing triggers for man-db (2.12.1-2) ... 485s Processing triggers for libc-bin (2.39-0ubuntu9) ... 497s (Reading database ... 82598 files and directories currently installed.) 497s Removing autopkgtest-satdep (0) ... 507s autopkgtest [15:56:37]: test run-unit-test: [----------------------- 507s /tmp/autopkgtest.BFqsGJ/build.wTu/src/tests/__init__.py:231: SyntaxWarning: invalid escape sequence '\d' 507s pattern = re.compile("-?t" + name + "_\d+\.abi") 507s /tmp/autopkgtest.BFqsGJ/build.wTu/src/tests/__init__.py:722: SyntaxWarning: invalid escape sequence '\[' 507s re_slice = re.compile("^\[(\d*):(\d*)\]$") 507s /tmp/autopkgtest.BFqsGJ/build.wTu/src/tests/__init__.py:723: SyntaxWarning: invalid escape sequence '\[' 507s re_single = re.compile("^\[(\d*)\]$") 507s /tmp/autopkgtest.BFqsGJ/build.wTu/src/tests/pymods/xyaptu.py:37: SyntaxWarning: invalid escape sequence '\+' 507s _reOpen = re.compile('\++yaptu ') 507s /tmp/autopkgtest.BFqsGJ/build.wTu/src/tests/pymods/yaptu.py:96: SyntaxWarning: invalid escape sequence '\+' 507s rbe=re.compile('\+') 511s stty: 'standard input': Inappropriate ioctl for device 550s Running on autopkgtest -- system Linux -- ncpus 2 -- Python 3.12.4 -- runtests.py-0.6.0 550s Regenerating database... 550s Saving database to /tmp/autopkgtest.BFqsGJ/build.wTu/src/tests/test_suite.cpkl 550s /tmp/tmp.KmGZP93apf directory already exists. Files will be removed 550s Running 26 test(s) with MPI_procs: 1, py_nprocs: 1 550s [fast][t00][np=1][run_etime: 4.40 s]: succeeded [file=t00.abo] 550s [fast][t01][np=1][run_etime: 0.63 s]: succeeded [file=t01.abo] 550s [fast][t02][np=1][run_etime: 1.61 s]: succeeded [file=t02.abo] 550s [fast][t03][np=1][run_etime: 1.38 s]: succeeded [file=t03.abo] 550s [fast][t05][np=1][run_etime: 0.61 s]: succeeded [file=t05.abo] 550s [fast][t06][np=1][run_etime: 0.63 s]: succeeded [file=t06.abo] 550s [fast][t07][np=1][run_etime: 0.64 s]: succeeded [file=t07.abo] 550s [fast][t08][np=1][run_etime: 0.79 s]: succeeded [file=t08.abo] 550s [fast][t09][np=1][run_etime: 0.67 s]: succeeded [file=t09.abo] 550s [fast][t11][np=1][run_etime: 0.79 s]: succeeded [file=t11.abo] 550s [fast][t12][np=1][run_etime: 0.81 s]: succeeded [file=t12.abo] 550s [fast][t14][np=1][run_etime: 0.70 s]: passed: abs error 9.999e-07 < 1.1e-06, rel error 0.0003729 < 0.0004 [file=t14.abo] 550s [fast][t16][np=1][run_etime: 0.71 s]: succeeded [file=t16.abo] 550s [fast][t04][np=1][run_etime: 0.76 s]: succeeded [file=t04.abo] 550s [fast][t17][np=1][run_etime: 0.79 s]: succeeded [file=t17.abo] 550s [fast][t19][np=1][run_etime: 0.80 s]: succeeded [file=t19.abo] 550s [fast][t20][np=1][run_etime: 1.81 s]: succeeded [file=t20.abo] 550s [fast][t21][np=1][run_etime: 4.09 s]: succeeded [file=t21.abo] 550s [fast][t23][np=1][run_etime: 1.11 s]: succeeded [file=t23.abo] 550s [fast][t24][np=1][run_etime: 1.53 s]: succeeded [file=t24.abo] 550s [fast][t25][np=1][run_etime: 1.75 s]: succeeded [file=t25.abo] 550s [fast][t26][np=1][run_etime: 1.10 s]: succeeded [file=t26.abo] 550s [fast][t27][np=1][run_etime: 1.25 s]: succeeded [file=t27.abo] 550s [fast][t28][np=1][run_etime: 2.05 s]: succeeded [file=t28.abo] 550s [fast][t28][np=1][run_etime: 2.05 s]: succeeded [file=t28o_TIM2_GEO] 550s [fast][t29][np=1][run_etime: 5.56 s]: succeeded [file=t29.abo] 550s [fast][t29][np=1][run_etime: 5.56 s]: succeeded [file=t29o_TIM8_GEO] 550s [fast][t30][np=1][run_etime: 0.79 s]: succeeded [file=t30.abo] 550s 550s Suite failed passed succeeded skipped disabled run_etime tot_etime 550s fast 0 1 10 0 0 37.76 38.00 550s 550s Completed in 38.33 [s]. Average time for test=3.43 [s], stdev=3.20 [s] 550s Summary: failed=0, succeeded=10, passed=1, skipped=0, disabled=0 550s 550s Execution completed. 550s Results in HTML format are available in /tmp/tmp.KmGZP93apf/suite_report.html 551s autopkgtest [15:57:21]: test run-unit-test: -----------------------] 552s autopkgtest [15:57:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 552s run-unit-test PASS 552s autopkgtest [15:57:22]: @@@@@@@@@@@@@@@@@@@@ summary 552s run-unit-test PASS 569s nova [W] Skipping flock in bos03-arm64 569s Creating nova instance adt-oracular-arm64-abinit-20240708-154809-juju-7f2275-prod-proposed-migration-environment-3-f0672dcb-e900-40df-9cd8-80f08e26e199 from image adt/ubuntu-oracular-arm64-server-20240708.img (UUID 84b7272a-8ade-4c46-a865-17c686a9cf9b)...