0s autopkgtest [01:12:25]: starting date and time: 2024-06-08 01:12:25+0000 0s autopkgtest [01:12:25]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [01:12:25]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.txwwqn2k/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade xrayutilities --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-12.secgroup --name adt-oracular-amd64-xrayutilities-20240608-011225-juju-7f2275-prod-proposed-migration-environment-3-e6f0b90f-9044-48fb-9d8d-91a15ec9d767 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 125s autopkgtest [01:14:30]: testbed dpkg architecture: amd64 125s autopkgtest [01:14:30]: testbed apt version: 2.9.3 125s autopkgtest [01:14:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 125s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 125s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 125s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [339 kB] 125s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2864 B] 125s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 125s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [38.1 kB] 125s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [66.4 kB] 125s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [27.4 kB] 125s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [9340 B] 125s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [126 kB] 125s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [315 kB] 125s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3368 B] 125s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [11.7 kB] 126s Fetched 1102 kB in 0s (2964 kB/s) 126s Reading package lists... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 129s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 129s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 129s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 131s Reading package lists... 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Calculating upgrade... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s autopkgtest [01:14:38]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 133s autopkgtest [01:14:38]: @@@@@@@@@@@@@@@@@@@@ apt-source xrayutilities 135s Get:1 http://ftpmaster.internal/ubuntu oracular/universe xrayutilities 1.7.4-1build3 (dsc) [2839 B] 135s Get:2 http://ftpmaster.internal/ubuntu oracular/universe xrayutilities 1.7.4-1build3 (tar) [9113 kB] 135s Get:3 http://ftpmaster.internal/ubuntu oracular/universe xrayutilities 1.7.4-1build3 (diff) [5264 B] 135s gpgv: Signature made Wed Apr 10 17:15:50 2024 UTC 135s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 135s gpgv: Can't check signature: No public key 135s dpkg-source: warning: cannot verify inline signature for ./xrayutilities_1.7.4-1build3.dsc: no acceptable signature found 135s autopkgtest [01:14:40]: testing package xrayutilities version 1.7.4-1build3 135s autopkgtest [01:14:40]: build not needed 136s autopkgtest [01:14:41]: test command1: preparing testbed 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Starting pkgProblemResolver with broken count: 0 137s Starting 2 pkgProblemResolver with broken count: 0 137s Done 138s The following additional packages will be installed: 138s blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 libgraphite2-3 138s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libjs-jquery 138s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libopenjp2-7 138s libqhull-r8.0 libraqm0 libsz2 libtcl8.6 libtk8.6 libwebpdemux2 libwebpmux3 138s libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 138s python3-appdirs python3-asteval python3-brotli python3-contourpy 138s python3-cycler python3-dateutil python3-decorator python3-fonttools 138s python3-fs python3-h5py python3-h5py-serial python3-iniconfig 138s python3-kiwisolver python3-lmfit python3-lxml python3-lz4 python3-matplotlib 138s python3-mpmath python3-numpy python3-packaging python3-pil 138s python3-pil.imagetk python3-pluggy python3-pytest python3-scipy 138s python3-sympy python3-tk python3-ufolib2 python3-uncertainties 138s python3-xrayutilities tk8.6-blt2.5 unicode-data x11-common 138s Suggested packages: 138s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 138s python-h5py-doc python-lmfit-doc python-lxml-doc cm-super-minimal dvipng 138s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 138s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 138s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 138s texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran 138s python-numpy-doc python3-dev python-pil-doc python-scipy-doc 138s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 138s python-uncertainties-doc 138s Recommended packages: 138s javascript-common python3-bs4 python3-cssselect python3-html5lib 138s python3-olefile g++ | c++-compiler isympy-common python-xrayutilities-doc 138s The following NEW packages will be installed: 138s autopkgtest-satdep blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 138s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 138s libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 138s liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 libsz2 libtcl8.6 libtk8.6 138s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 138s python-matplotlib-data python3-all python3-appdirs python3-asteval 138s python3-brotli python3-contourpy python3-cycler python3-dateutil 138s python3-decorator python3-fonttools python3-fs python3-h5py 138s python3-h5py-serial python3-iniconfig python3-kiwisolver python3-lmfit 138s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 138s python3-packaging python3-pil python3-pil.imagetk python3-pluggy 138s python3-pytest python3-scipy python3-sympy python3-tk python3-ufolib2 138s python3-uncertainties python3-xrayutilities tk8.6-blt2.5 unicode-data 138s x11-common 138s 0 upgraded, 65 newly installed, 0 to remove and 0 not upgraded. 138s Need to get 65.6 MB/65.6 MB of archives. 138s After this operation, 253 MB of additional disk space will be used. 138s Get:1 /tmp/autopkgtest.OXJEGU/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [724 B] 138s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 138s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 138s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 138s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 138s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 138s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 138s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 138s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 138s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.0-1 [171 kB] 138s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 138s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 138s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 138s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 138s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2build1 [73.0 kB] 138s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 138s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 138s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 138s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 138s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 138s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 138s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 138s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 138s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 138s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 138s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 138s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 138s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 138s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 138s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 138s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 138s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 138s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 138s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 138s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-asteval all 0.9.31-1 [20.9 kB] 138s Get:36 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 138s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 138s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 138s Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 138s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 138s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 138s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.11.4-10 [15.5 MB] 138s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 138s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 138s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 138s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 138s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 138s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 138s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 139s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 139s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB] 139s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 139s Get:53 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 139s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 139s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 139s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB] 139s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 139s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B] 139s Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 139s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB] 139s Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 139s Get:62 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pytest all 8.2.2-1ubuntu1 [250 kB] 139s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-uncertainties all 3.1.7-2 [79.1 kB] 139s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lmfit all 1.2.2-3 [81.8 kB] 139s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-xrayutilities amd64 1.7.4-1build3 [7932 kB] 139s Fetched 65.6 MB in 1s (120 MB/s) 139s Selecting previously unselected package libtcl8.6:amd64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74365 files and directories currently installed.) 139s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 139s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 139s Selecting previously unselected package libxrender1:amd64. 139s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 139s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 139s Selecting previously unselected package libxft2:amd64. 139s Preparing to unpack .../02-libxft2_2.3.6-1build1_amd64.deb ... 139s Unpacking libxft2:amd64 (2.3.6-1build1) ... 139s Selecting previously unselected package x11-common. 139s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 139s Unpacking x11-common (1:7.7+23ubuntu3) ... 140s Selecting previously unselected package libxss1:amd64. 140s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_amd64.deb ... 140s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 140s Selecting previously unselected package libtk8.6:amd64. 140s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_amd64.deb ... 140s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 140s Selecting previously unselected package tk8.6-blt2.5. 140s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 140s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 140s Selecting previously unselected package blt. 140s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_amd64.deb ... 140s Unpacking blt (2.5.3+dfsg-7build1) ... 140s Selecting previously unselected package fonts-lyx. 140s Preparing to unpack .../08-fonts-lyx_2.4.0-1_all.deb ... 140s Unpacking fonts-lyx (2.4.0-1) ... 140s Selecting previously unselected package libaec0:amd64. 140s Preparing to unpack .../09-libaec0_1.1.3-1_amd64.deb ... 140s Unpacking libaec0:amd64 (1.1.3-1) ... 140s Selecting previously unselected package libblas3:amd64. 140s Preparing to unpack .../10-libblas3_3.12.0-3build1_amd64.deb ... 140s Unpacking libblas3:amd64 (3.12.0-3build1) ... 140s Selecting previously unselected package libgfortran5:amd64. 140s Preparing to unpack .../11-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 140s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 140s Selecting previously unselected package libgomp1:amd64. 140s Preparing to unpack .../12-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 140s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 140s Selecting previously unselected package libgraphite2-3:amd64. 140s Preparing to unpack .../13-libgraphite2-3_1.3.14-2build1_amd64.deb ... 140s Unpacking libgraphite2-3:amd64 (1.3.14-2build1) ... 140s Selecting previously unselected package libharfbuzz0b:amd64. 140s Preparing to unpack .../14-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 140s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 140s Selecting previously unselected package libsz2:amd64. 140s Preparing to unpack .../15-libsz2_1.1.3-1_amd64.deb ... 140s Unpacking libsz2:amd64 (1.1.3-1) ... 140s Selecting previously unselected package libhdf5-103-1t64:amd64. 140s Preparing to unpack .../16-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 140s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 140s Selecting previously unselected package libhdf5-hl-100t64:amd64. 140s Preparing to unpack .../17-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 140s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 140s Selecting previously unselected package libimagequant0:amd64. 140s Preparing to unpack .../18-libimagequant0_2.18.0-1build1_amd64.deb ... 140s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 140s Selecting previously unselected package libjs-jquery. 140s Preparing to unpack .../19-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 140s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 140s Selecting previously unselected package libjs-jquery-ui. 140s Preparing to unpack .../20-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 140s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 140s Selecting previously unselected package liblapack3:amd64. 140s Preparing to unpack .../21-liblapack3_3.12.0-3build1_amd64.deb ... 140s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 140s Selecting previously unselected package liblbfgsb0:amd64. 140s Preparing to unpack .../22-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 140s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 140s Selecting previously unselected package liblcms2-2:amd64. 140s Preparing to unpack .../23-liblcms2-2_2.14-2build1_amd64.deb ... 140s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 140s Selecting previously unselected package liblzf1:amd64. 140s Preparing to unpack .../24-liblzf1_3.6-4_amd64.deb ... 140s Unpacking liblzf1:amd64 (3.6-4) ... 140s Selecting previously unselected package libqhull-r8.0:amd64. 140s Preparing to unpack .../25-libqhull-r8.0_2020.2-6build1_amd64.deb ... 140s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 140s Selecting previously unselected package libraqm0:amd64. 140s Preparing to unpack .../26-libraqm0_0.10.1-1build1_amd64.deb ... 140s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 140s Selecting previously unselected package libwebpdemux2:amd64. 140s Preparing to unpack .../27-libwebpdemux2_1.4.0-0.1_amd64.deb ... 140s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 140s Selecting previously unselected package libwebpmux3:amd64. 140s Preparing to unpack .../28-libwebpmux3_1.4.0-0.1_amd64.deb ... 140s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 140s Selecting previously unselected package libxslt1.1:amd64. 140s Preparing to unpack .../29-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 140s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 140s Selecting previously unselected package python-matplotlib-data. 140s Preparing to unpack .../30-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 140s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 141s Selecting previously unselected package python3-all. 141s Preparing to unpack .../31-python3-all_3.12.3-0ubuntu1_amd64.deb ... 141s Unpacking python3-all (3.12.3-0ubuntu1) ... 141s Selecting previously unselected package python3-appdirs. 141s Preparing to unpack .../32-python3-appdirs_1.4.4-4_all.deb ... 141s Unpacking python3-appdirs (1.4.4-4) ... 141s Selecting previously unselected package python3-asteval. 141s Preparing to unpack .../33-python3-asteval_0.9.31-1_all.deb ... 141s Unpacking python3-asteval (0.9.31-1) ... 141s Selecting previously unselected package python3-brotli. 141s Preparing to unpack .../34-python3-brotli_1.1.0-2build2_amd64.deb ... 141s Unpacking python3-brotli (1.1.0-2build2) ... 141s Selecting previously unselected package python3-numpy. 141s Preparing to unpack .../35-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 141s Unpacking python3-numpy (1:1.26.4+ds-10) ... 141s Selecting previously unselected package python3-contourpy. 141s Preparing to unpack .../36-python3-contourpy_1.0.7-3_amd64.deb ... 141s Unpacking python3-contourpy (1.0.7-3) ... 141s Selecting previously unselected package python3-cycler. 141s Preparing to unpack .../37-python3-cycler_0.12.1-1_all.deb ... 141s Unpacking python3-cycler (0.12.1-1) ... 141s Selecting previously unselected package python3-dateutil. 141s Preparing to unpack .../38-python3-dateutil_2.9.0-2_all.deb ... 141s Unpacking python3-dateutil (2.9.0-2) ... 141s Selecting previously unselected package python3-decorator. 141s Preparing to unpack .../39-python3-decorator_5.1.1-5_all.deb ... 141s Unpacking python3-decorator (5.1.1-5) ... 141s Selecting previously unselected package python3-scipy. 141s Preparing to unpack .../40-python3-scipy_1.11.4-10_amd64.deb ... 141s Unpacking python3-scipy (1.11.4-10) ... 142s Selecting previously unselected package python3-ufolib2. 142s Preparing to unpack .../41-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 142s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 142s Selecting previously unselected package python3-mpmath. 142s Preparing to unpack .../42-python3-mpmath_1.3.0-1_all.deb ... 142s Unpacking python3-mpmath (1.3.0-1) ... 142s Selecting previously unselected package python3-sympy. 142s Preparing to unpack .../43-python3-sympy_1.12-8_all.deb ... 142s Unpacking python3-sympy (1.12-8) ... 142s Selecting previously unselected package python3-fs. 142s Preparing to unpack .../44-python3-fs_2.4.16-4_all.deb ... 142s Unpacking python3-fs (2.4.16-4) ... 142s Selecting previously unselected package python3-lxml:amd64. 142s Preparing to unpack .../45-python3-lxml_5.2.1-1_amd64.deb ... 142s Unpacking python3-lxml:amd64 (5.2.1-1) ... 142s Selecting previously unselected package python3-lz4. 142s Preparing to unpack .../46-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 142s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 142s Selecting previously unselected package unicode-data. 142s Preparing to unpack .../47-unicode-data_15.1.0-1_all.deb ... 142s Unpacking unicode-data (15.1.0-1) ... 142s Selecting previously unselected package python3-fonttools. 142s Preparing to unpack .../48-python3-fonttools_4.46.0-1build2_amd64.deb ... 142s Unpacking python3-fonttools (4.46.0-1build2) ... 143s Selecting previously unselected package python3-h5py-serial. 143s Preparing to unpack .../49-python3-h5py-serial_3.10.0-1ubuntu3_amd64.deb ... 143s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 143s Selecting previously unselected package python3-h5py. 143s Preparing to unpack .../50-python3-h5py_3.10.0-1ubuntu3_all.deb ... 143s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 143s Selecting previously unselected package python3-iniconfig. 143s Preparing to unpack .../51-python3-iniconfig_1.1.1-2_all.deb ... 143s Unpacking python3-iniconfig (1.1.1-2) ... 143s Selecting previously unselected package python3-kiwisolver. 143s Preparing to unpack .../52-python3-kiwisolver_1.4.5-1_amd64.deb ... 143s Unpacking python3-kiwisolver (1.4.5-1) ... 143s Selecting previously unselected package libopenjp2-7:amd64. 143s Preparing to unpack .../53-libopenjp2-7_2.5.0-2build3_amd64.deb ... 143s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 143s Selecting previously unselected package python3-pil:amd64. 143s Preparing to unpack .../54-python3-pil_10.3.0-2_amd64.deb ... 143s Unpacking python3-pil:amd64 (10.3.0-2) ... 143s Selecting previously unselected package python3-tk:amd64. 143s Preparing to unpack .../55-python3-tk_3.12.3-0ubuntu1_amd64.deb ... 143s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ... 143s Selecting previously unselected package python3-pil.imagetk:amd64. 143s Preparing to unpack .../56-python3-pil.imagetk_10.3.0-2_amd64.deb ... 143s Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ... 143s Selecting previously unselected package python3-packaging. 143s Preparing to unpack .../57-python3-packaging_24.0-1_all.deb ... 143s Unpacking python3-packaging (24.0-1) ... 143s Selecting previously unselected package python3-matplotlib. 143s Preparing to unpack .../58-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ... 143s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 143s Selecting previously unselected package python3-pluggy. 143s Preparing to unpack .../59-python3-pluggy_1.5.0-1_all.deb ... 143s Unpacking python3-pluggy (1.5.0-1) ... 143s Selecting previously unselected package python3-pytest. 143s Preparing to unpack .../60-python3-pytest_8.2.2-1ubuntu1_all.deb ... 143s Unpacking python3-pytest (8.2.2-1ubuntu1) ... 143s Selecting previously unselected package python3-uncertainties. 143s Preparing to unpack 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144s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 144s Setting up x11-common (1:7.7+23ubuntu3) ... 144s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 144s Setting up python3-all (3.12.3-0ubuntu1) ... 144s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 144s Setting up libaec0:amd64 (1.1.3-1) ... 144s Setting up unicode-data (15.1.0-1) ... 144s Setting up python3-decorator (5.1.1-5) ... 144s Setting up libblas3:amd64 (3.12.0-3build1) ... 144s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 144s Setting up python3-packaging (24.0-1) ... 144s Setting up python3-brotli (1.1.0-2build2) ... 145s Setting up liblzf1:amd64 (3.6-4) ... 145s Setting up python3-cycler (0.12.1-1) ... 145s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 145s Setting up python3-kiwisolver (1.4.5-1) ... 145s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 145s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 145s Setting up python3-pluggy (1.5.0-1) ... 145s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 145s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 145s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... 145s Setting up python3-dateutil (2.9.0-2) ... 145s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 145s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 145s Setting up python3-mpmath (1.3.0-1) ... 146s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 146s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 146s Setting up python3-appdirs (1.4.4-4) ... 146s Setting up libsz2:amd64 (1.1.3-1) ... 146s Setting up python3-sympy (1.12-8) ... 152s Setting up liblapack3:amd64 (3.12.0-3build1) ... 152s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 152s Setting up libxft2:amd64 (2.3.6-1build1) ... 152s Setting up python3-pytest (8.2.2-1ubuntu1) ... 153s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 153s Setting up python3-fs (2.4.16-4) ... 153s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 153s Setting up libraqm0:amd64 (0.10.1-1build1) ... 153s Setting up python3-numpy (1:1.26.4+ds-10) ... 155s Setting up python3-lxml:amd64 (5.2.1-1) ... 155s Setting up python3-contourpy (1.0.7-3) ... 155s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 155s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 155s Setting up python3-uncertainties (3.1.7-2) ... 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1707: SyntaxWarning: invalid escape sequence '\p' 155s 'fL': '1234.57 \pm 0.10', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1708: SyntaxWarning: invalid escape sequence '\p' 155s 'FL': '1234.57 \pm 0.10', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1709: SyntaxWarning: invalid escape sequence '\p' 155s 'fL': '1234.57 \pm 0.10', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1710: SyntaxWarning: invalid escape sequence '\p' 155s 'FL': '1234.57 \pm 0.10', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1750: SyntaxWarning: invalid escape sequence '\m' 155s 'PSL': u'-1.2(\mathrm{nan})×10⁻¹²', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1829: SyntaxWarning: invalid escape sequence '\p' 155s 'fL': '1234.567890 \pm 0', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1830: SyntaxWarning: invalid escape sequence '\p' 155s 'FL': '1234.567890 \pm 0', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1995: SyntaxWarning: invalid escape sequence '\i' 155s 'LS': '-\infty(\infty)', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1996: SyntaxWarning: invalid escape sequence '\i' 155s 'L': '-\infty \pm \infty', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1997: SyntaxWarning: invalid escape sequence '\i' 155s 'LP': u'-\infty±\infty', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:2021: SyntaxWarning: invalid escape sequence '\m' 155s 'LS': '\mathrm{nan}(\infty)', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:2022: SyntaxWarning: invalid escape sequence '\m' 155s 'L': '\mathrm{nan} \pm \infty', 155s /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:2023: SyntaxWarning: invalid escape sequence '\m' 155s 'LP': u'\mathrm{nan}±\infty' 155s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 155s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 155s Setting up python3-scipy (1.11.4-10) ... 158s Setting up blt (2.5.3+dfsg-7build1) ... 158s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 159s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ... 159s Setting up python3-pil:amd64 (10.3.0-2) ... 159s Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... 159s Setting up python3-h5py (3.10.0-1ubuntu3) ... 159s Setting up python3-lmfit (1.2.2-3) ... 160s Setting up python3-fonttools (4.46.0-1build2) ... 161s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 161s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 162s Setting up python3-xrayutilities (1.7.4-1build3) ... 163s Setting up autopkgtest-satdep (0) ... 163s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 163s Processing triggers for man-db (2.12.1-1) ... 167s (Reading database ... 81300 files and directories currently installed.) 167s Removing autopkgtest-satdep (0) ... 167s autopkgtest [01:15:12]: test command1: set -efu ; cp -r tests "$AUTOPKGTEST_TMP" ; cp -r examples "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest ; done 167s autopkgtest [01:15:12]: test command1: [----------------------- 167s Testing with python3.12: 168s ============================= test session starts ============================== 168s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 168s rootdir: /tmp/autopkgtest.OXJEGU/autopkgtest_tmp 168s collected 246 items 168s 168s tests/test_HXRD.py ..... [ 2%] 168s tests/test_NonCOP.py .. [ 2%] 168s tests/test_alloy_content_calc.py .. [ 3%] 168s tests/test_amorphous.py .. [ 4%] 169s tests/test_analysis_linecuts.py ....... [ 7%] 169s tests/test_area_calib.py ss [ 8%] 169s tests/test_blockaverage.py ... [ 9%] 169s tests/test_ccd_normalizer.py ss [ 10%] 232s tests/test_examples.py ................................ [ 23%] 232s tests/test_functions.py ......... [ 26%] 232s tests/test_fuzzygridder1d.py .. [ 27%] 232s tests/test_fuzzygridder2d.py ... [ 28%] 232s tests/test_fuzzygridder3d.py .... [ 30%] 232s tests/test_getang.py ... [ 31%] 232s tests/test_gridder1d.py .. [ 32%] 232s tests/test_gridder2d.py ... [ 33%] 232s tests/test_gridder2dlist.py . [ 34%] 232s tests/test_gridder3d.py .... [ 35%] 232s tests/test_io_cbf.py ssss [ 37%] 232s tests/test_io_edf.py ssss [ 39%] 232s tests/test_io_esg.py ss [ 39%] 232s tests/test_io_fastscan.py sss [ 41%] 232s tests/test_io_fio.py ssss [ 42%] 232s tests/test_io_nja.py sss [ 43%] 232s tests/test_io_nja_map.py ss [ 44%] 232s tests/test_io_nja_tsk.py ss [ 45%] 232s tests/test_io_numor.py sss [ 46%] 232s tests/test_io_pdcif.py ss [ 47%] 232s tests/test_io_perkinelmer.py sss [ 48%] 232s tests/test_io_pilatus.py ss [ 49%] 232s tests/test_io_rigaku.py ssss [ 51%] 232s tests/test_io_roperccd.py ss [ 52%] 232s tests/test_io_spec.py sssss [ 54%] 232s tests/test_io_specalignmentlog.py ss [ 54%] 232s tests/test_io_speclog.py s [ 55%] 232s tests/test_io_specsardana.py sss [ 56%] 232s tests/test_io_tty.py sss [ 57%] 232s tests/test_io_xrdml.py ssss [ 59%] 232s tests/test_linear_calib.py s [ 59%] 232s tests/test_maplog.py .. [ 60%] 232s tests/test_materials.py .......... [ 64%] 232s tests/test_materials_cif.py sss [ 65%] 234s tests/test_materials_cifexport.py . [ 66%] 236s tests/test_materials_database.py .......... [ 70%] 240s tests/test_materials_findsym.py . [ 70%] 283s tests/test_materials_hklcond.py ... [ 71%] 326s tests/test_materials_symop.py .... [ 73%] 326s tests/test_math_peak_fit.py ...... [ 76%] 326s tests/test_math_solve_quartic.py . [ 76%] 326s tests/test_math_vector.py . [ 76%] 326s tests/test_miscut_calc.py ... [ 78%] 326s tests/test_npygridder1d.py .. [ 78%] 326s tests/test_optical_properties.py ... [ 80%] 326s tests/test_pseudomorphic.py .. [ 80%] 327s tests/test_q2angfit.py . [ 81%] 327s tests/test_qconversion.py .... [ 82%] 327s tests/test_qconversion_area.py ..... [ 84%] 327s tests/test_qconversion_linear.py .... [ 86%] 327s tests/test_qconversion_trans.py ......... [ 90%] 327s tests/test_simpack_dynamicalmodel.py .... [ 91%] 327s tests/test_simpack_kinematicalmodel.py .... [ 93%] 327s tests/test_simpack_powdermodel.py sss [ 94%] 333s tests/test_simpack_xrrdiffuse.py .. [ 95%] 333s tests/test_simpack_xrrspecular.py ... [ 96%] 333s tests/test_structure_factor.py ... [ 97%] 333s tests/test_transforms.py ..... [100%] 333s 333s =============================== warnings summary =============================== 333s tests/test_examples.py:70 333s /tmp/autopkgtest.OXJEGU/autopkgtest_tmp/tests/test_examples.py:70: PytestCollectionWarning: cannot collect test class 'TestExampleScriptsMeta' because it has a __init__ constructor (from: tests/test_examples.py) 333s class TestExampleScriptsMeta(type): 333s 333s tests/test_materials.py::TestMaterialsTransform::test_Strain 333s /tmp/autopkgtest.OXJEGU/autopkgtest_tmp/tests/test_materials.py:136: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 333s strain[2,2] = numpy.random.rand(1) 333s 333s tests/test_materials.py::TestMaterialsTransform::test_Stress 333s /tmp/autopkgtest.OXJEGU/autopkgtest_tmp/tests/test_materials.py:148: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 333s stress[2,2] = numpy.random.rand(1) 333s 333s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 333s =========== 177 passed, 69 skipped, 3 warnings in 166.02s (0:02:46) ============ 334s autopkgtest [01:17:59]: test command1: -----------------------] 334s autopkgtest [01:17:59]: test command1: - - - - - - - - - - results - - - - - - - - - - 334s command1 PASS 334s autopkgtest [01:17:59]: @@@@@@@@@@@@@@@@@@@@ summary 334s command1 PASS 346s nova [W] Skipping flock for amd64 346s Creating nova instance adt-oracular-amd64-xrayutilities-20240608-011225-juju-7f2275-prod-proposed-migration-environment-3-e6f0b90f-9044-48fb-9d8d-91a15ec9d767 from image adt/ubuntu-oracular-amd64-server-20240608.img (UUID c584088c-c855-4ca6-a835-cbd91bb3089c)...