0s autopkgtest [16:02:53]: starting date and time: 2024-07-26 16:02:53+0000 0s autopkgtest [16:02:53]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [16:02:53]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vuinp732/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:xgboost --apt-upgrade xgboost --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=xgboost/2.1.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-137.secgroup --name adt-oracular-amd64-xgboost-20240726-160253-juju-7f2275-prod-proposed-migration-environment-2-2ef8d594-4842-4988-a944-e2e97e709849 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 77s autopkgtest [16:04:10]: testbed dpkg architecture: amd64 77s autopkgtest [16:04:10]: testbed apt version: 2.9.6 77s autopkgtest [16:04:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 77s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 77s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 77s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [436 kB] 77s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B] 77s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB] 77s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [53.4 kB] 77s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [94.8 kB] 77s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 77s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 77s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 77s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 77s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [296 kB] 77s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [498 kB] 77s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 77s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 77s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [8792 B] 77s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 78s Fetched 1634 kB in 0s (4803 kB/s) 79s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s Calculating upgrade... 81s The following packages will be upgraded: 81s bpfcc-tools bpftrace libbpfcc liblz4-1 mawk python3-bpfcc 81s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 13.9 MB of archives. 81s After this operation, 37.8 MB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 liblz4-1 amd64 1.9.4-3 [63.1 kB] 81s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 mawk amd64 1.3.4.20240622-2 [127 kB] 81s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libbpfcc amd64 0.30.0+ds-1ubuntu2 [644 kB] 81s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bpfcc all 0.30.0+ds-1ubuntu2 [40.3 kB] 81s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 bpfcc-tools all 0.30.0+ds-1ubuntu2 [697 kB] 81s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 bpftrace amd64 0.21.0-1ubuntu6 [12.3 MB] 81s Fetched 13.9 MB in 0s (74.0 MB/s) 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 82s Preparing to unpack .../liblz4-1_1.9.4-3_amd64.deb ... 82s Unpacking liblz4-1:amd64 (1.9.4-3) over (1.9.4-2) ... 82s Setting up liblz4-1:amd64 (1.9.4-3) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 82s Preparing to unpack .../mawk_1.3.4.20240622-2_amd64.deb ... 82s Unpacking mawk (1.3.4.20240622-2) over (1.3.4.20240622-1) ... 82s Preparing to unpack .../libbpfcc_0.30.0+ds-1ubuntu2_amd64.deb ... 82s Unpacking libbpfcc:amd64 (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 82s Preparing to unpack .../python3-bpfcc_0.30.0+ds-1ubuntu2_all.deb ... 82s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 82s Preparing to unpack .../bpfcc-tools_0.30.0+ds-1ubuntu2_all.deb ... 82s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 82s Preparing to unpack .../bpftrace_0.21.0-1ubuntu6_amd64.deb ... 82s Unpacking bpftrace (0.21.0-1ubuntu6) over (0.20.2-1ubuntu4) ... 83s Setting up mawk (1.3.4.20240622-2) ... 83s Setting up libbpfcc:amd64 (0.30.0+ds-1ubuntu2) ... 83s Setting up python3-bpfcc (0.30.0+ds-1ubuntu2) ... 83s Setting up bpftrace (0.21.0-1ubuntu6) ... 83s Setting up bpfcc-tools (0.30.0+ds-1ubuntu2) ... 83s Processing triggers for man-db (2.12.1-2) ... 84s Processing triggers for libc-bin (2.39-0ubuntu9) ... 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 85s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 86s Reading package lists... 86s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade... 87s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s autopkgtest [16:04:22]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 89s autopkgtest [16:04:22]: @@@@@@@@@@@@@@@@@@@@ apt-source xgboost 90s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe xgboost 2.1.0-1 (dsc) [2256 B] 90s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe xgboost 2.1.0-1 (tar) [2125 kB] 90s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe xgboost 2.1.0-1 (diff) [22.4 kB] 90s gpgv: Signature made Mon Jul 15 06:59:46 2024 UTC 90s gpgv: using RSA key 638BC75EC1E5C589067E35DE62645EB35F686A8A 90s gpgv: issuer "lumin@debian.org" 90s gpgv: Can't check signature: No public key 90s dpkg-source: warning: cannot verify inline signature for ./xgboost_2.1.0-1.dsc: no acceptable signature found 91s autopkgtest [16:04:24]: testing package xgboost version 2.1.0-1 91s autopkgtest [16:04:24]: build not needed 91s autopkgtest [16:04:24]: test command1: preparing testbed 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 93s The following additional packages will be installed: 93s libblas3 libgfortran5 liblapack3 liblbfgsb0 libxgboost-dev libxgboost0 93s python3-decorator python3-joblib python3-numpy python3-scipy python3-sklearn 93s python3-sklearn-lib python3-threadpoolctl python3-xgboost 93s Suggested packages: 93s gcc gfortran python-numpy-doc python3-dev python3-pytest python-scipy-doc 93s python3-dap python-sklearn-doc ipython3 93s Recommended packages: 93s python3-pytest python3-simplejson python3-psutil g++ | c++-compiler 93s python3-pil python3-matplotlib 93s The following NEW packages will be installed: 93s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 93s libxgboost-dev libxgboost0 python3-decorator python3-joblib python3-numpy 93s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 93s python3-xgboost 93s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. 93s Need to get 33.3 MB/33.3 MB of archives. 93s After this operation, 148 MB of additional disk space will be used. 93s Get:1 /tmp/autopkgtest.lxaKtI/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [732 B] 93s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 93s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-5ubuntu1 [909 kB] 93s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 93s Get:5 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 93s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 libxgboost0 amd64 2.1.0-1 [2071 kB] 93s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 libxgboost-dev amd64 2.1.0-1 [74.2 kB] 93s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 93s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-joblib all 1.3.2-2 [208 kB] 93s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 94s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 94s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 94s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-3 [3786 kB] 94s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 94s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-xgboost amd64 2.1.0-1 [116 kB] 95s Fetched 33.3 MB in 1s (26.6 MB/s) 95s Selecting previously unselected package libblas3:amd64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74530 files and directories currently installed.) 95s Preparing to unpack .../00-libblas3_3.12.0-3build1_amd64.deb ... 95s Unpacking libblas3:amd64 (3.12.0-3build1) ... 95s Selecting previously unselected package libgfortran5:amd64. 95s Preparing to unpack .../01-libgfortran5_14.1.0-5ubuntu1_amd64.deb ... 95s Unpacking libgfortran5:amd64 (14.1.0-5ubuntu1) ... 95s Selecting previously unselected package liblapack3:amd64. 95s Preparing to unpack .../02-liblapack3_3.12.0-3build1_amd64.deb ... 95s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 95s Selecting previously unselected package liblbfgsb0:amd64. 95s Preparing to unpack .../03-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 95s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 95s Selecting previously unselected package libxgboost0. 95s Preparing to unpack .../04-libxgboost0_2.1.0-1_amd64.deb ... 95s Unpacking libxgboost0 (2.1.0-1) ... 95s Selecting previously unselected package libxgboost-dev. 95s Preparing to unpack .../05-libxgboost-dev_2.1.0-1_amd64.deb ... 95s Unpacking libxgboost-dev (2.1.0-1) ... 95s Selecting previously unselected package python3-decorator. 95s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 95s Unpacking python3-decorator (5.1.1-5) ... 95s Selecting previously unselected package python3-joblib. 95s Preparing to unpack .../07-python3-joblib_1.3.2-2_all.deb ... 95s Unpacking python3-joblib (1.3.2-2) ... 95s Selecting previously unselected package python3-numpy. 95s Preparing to unpack .../08-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 95s Unpacking python3-numpy (1:1.26.4+ds-10) ... 95s Selecting previously unselected package python3-scipy. 95s Preparing to unpack .../09-python3-scipy_1.12.0-2_amd64.deb ... 95s Unpacking python3-scipy (1.12.0-2) ... 96s Selecting previously unselected package python3-threadpoolctl. 96s Preparing to unpack .../10-python3-threadpoolctl_3.1.0-1_all.deb ... 96s Unpacking python3-threadpoolctl (3.1.0-1) ... 96s Selecting previously unselected package python3-sklearn-lib:amd64. 96s Preparing to unpack .../11-python3-sklearn-lib_1.4.2+dfsg-3_amd64.deb ... 96s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-3) ... 96s Selecting previously unselected package python3-sklearn. 96s Preparing to unpack .../12-python3-sklearn_1.4.2+dfsg-3_all.deb ... 96s Unpacking python3-sklearn (1.4.2+dfsg-3) ... 96s Selecting previously unselected package python3-xgboost. 96s Preparing to unpack .../13-python3-xgboost_2.1.0-1_amd64.deb ... 96s Unpacking python3-xgboost (2.1.0-1) ... 96s Selecting previously unselected package autopkgtest-satdep. 96s Preparing to unpack .../14-1-autopkgtest-satdep.deb ... 96s Unpacking autopkgtest-satdep (0) ... 96s Setting up python3-joblib (1.3.2-2) ... 96s Setting up python3-threadpoolctl (3.1.0-1) ... 97s Setting up python3-decorator (5.1.1-5) ... 97s Setting up libblas3:amd64 (3.12.0-3build1) ... 97s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 97s Setting up libgfortran5:amd64 (14.1.0-5ubuntu1) ... 97s Setting up libxgboost0 (2.1.0-1) ... 97s Setting up liblapack3:amd64 (3.12.0-3build1) ... 97s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 97s Setting up libxgboost-dev (2.1.0-1) ... 97s Setting up python3-numpy (1:1.26.4+ds-10) ... 99s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 99s Setting up python3-scipy (1.12.0-2) ... 102s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-3) ... 102s Setting up python3-xgboost (2.1.0-1) ... 102s Setting up python3-sklearn (1.4.2+dfsg-3) ... 104s Setting up autopkgtest-satdep (0) ... 104s Processing triggers for man-db (2.12.1-2) ... 105s Processing triggers for libc-bin (2.39-0ubuntu9) ... 107s (Reading database ... 77986 files and directories currently installed.) 107s Removing autopkgtest-satdep (0) ... 107s autopkgtest [16:04:40]: test command1: python3 demo/guide-python/basic_walkthrough.py 107s autopkgtest [16:04:40]: test command1: [----------------------- 108s Traceback (most recent call last): 108s File "/tmp/autopkgtest.lxaKtI/build.i2p/src/demo/guide-python/basic_walkthrough.py", line 18, in 108s import xgboost as xgb 108s File "/usr/lib/python3/dist-packages/xgboost/__init__.py", line 6, in 108s from . import tracker # noqa 108s ^^^^^^^^^^^^^^^^^^^^^ 108s File "/usr/lib/python3/dist-packages/xgboost/tracker.py", line 9, in 108s from .core import _LIB, _check_call, make_jcargs 108s File "/usr/lib/python3/dist-packages/xgboost/core.py", line 269, in 108s _LIB = _load_lib() 108s ^^^^^^^^^^^ 108s File "/usr/lib/python3/dist-packages/xgboost/core.py", line 222, in _load_lib 108s raise XGBoostError( 108s xgboost.core.XGBoostError: 108s XGBoost Library (libxgboost.so) could not be loaded. 108s Likely causes: 108s * OpenMP runtime is not installed 108s - vcomp140.dll or libgomp-1.dll for Windows 108s - libomp.dylib for Mac OSX 108s - libgomp.so for Linux and other UNIX-like OSes 108s Mac OSX users: Run `brew install libomp` to install OpenMP runtime. 108s 108s * You are running 32-bit Python on a 64-bit OS 108s 108s Error message(s): ['/usr/lib/python3/dist-packages/xgboost/lib/libxgboost.so: undefined symbol: _ZN4dmlc6ParserIjfE6CreateEPKcjjS3_'] 108s 108s autopkgtest [16:04:41]: test command1: -----------------------] 109s autopkgtest [16:04:42]: test command1: - - - - - - - - - - results - - - - - - - - - - 109s command1 FAIL non-zero exit status 1 109s autopkgtest [16:04:42]: @@@@@@@@@@@@@@@@@@@@ summary 109s command1 FAIL non-zero exit status 1 121s nova [W] Skipping flock for amd64 121s Creating nova instance adt-oracular-amd64-xgboost-20240726-160253-juju-7f2275-prod-proposed-migration-environment-2-2ef8d594-4842-4988-a944-e2e97e709849 from image adt/ubuntu-oracular-amd64-server-20240726.img (UUID 6c5f29e9-79d7-45b1-9721-03e2205f6a0e)...