0s autopkgtest [23:27:18]: starting date and time: 2024-06-28 23:27:18+0000 0s autopkgtest [23:27:18]: git checkout: 85adf9a1 setup-testbed: prevent /tmp from getting a tmpfs mount 0s autopkgtest [23:27:18]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.aj6tmm2x/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade unifrac --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-65.secgroup --name adt-oracular-amd64-unifrac-20240628-232718-juju-7f2275-prod-proposed-migration-environment-3-b5eb3924-531c-4d11-851a-7163e68c1db8 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 89s autopkgtest [23:28:47]: testbed dpkg architecture: amd64 89s autopkgtest [23:28:47]: testbed apt version: 2.9.5 89s autopkgtest [23:28:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 90s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 90s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [370 kB] 90s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 90s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [52.0 kB] 90s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 90s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [82.8 kB] 90s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [101 kB] 90s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 90s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [28.0 kB] 90s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [406 kB] 90s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [229 kB] 90s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7968 B] 90s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3368 B] 90s Fetched 1406 kB in 0s (4412 kB/s) 90s Reading package lists... 95s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s Calculating upgrade... 97s The following packages will be upgraded: 97s base-files libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 97s motd-news-config 97s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Need to get 10.4 MB of archives. 97s After this operation, 35.8 kB of additional disk space will be used. 97s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 motd-news-config all 13.3ubuntu2 [5416 B] 97s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-devtools amd64 2.39-3.1ubuntu2 [29.3 kB] 97s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6-dev amd64 2.39-3.1ubuntu2 [2120 kB] 97s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-dev-bin amd64 2.39-3.1ubuntu2 [20.4 kB] 97s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 base-files amd64 13.3ubuntu2 [75.3 kB] 97s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6 amd64 2.39-3.1ubuntu2 [3261 kB] 97s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-bin amd64 2.39-3.1ubuntu2 [680 kB] 97s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 locales all 2.39-3.1ubuntu2 [4220 kB] 98s Preconfiguring packages ... 98s Fetched 10.4 MB in 0s (72.5 MB/s) 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74417 files and directories currently installed.) 98s Preparing to unpack .../motd-news-config_13.3ubuntu2_all.deb ... 98s Unpacking motd-news-config (13.3ubuntu2) over (13.1ubuntu1) ... 98s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu2_amd64.deb ... 98s Unpacking libc-devtools (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 98s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu2_amd64.deb ... 98s Unpacking libc6-dev:amd64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 99s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu2_amd64.deb ... 99s Unpacking libc-dev-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 99s Preparing to unpack .../base-files_13.3ubuntu2_amd64.deb ... 99s Unpacking base-files (13.3ubuntu2) over (13.1ubuntu1) ... 99s Setting up base-files (13.3ubuntu2) ... 99s Updating /etc/profile to current default. 100s motd-news.service is a disabled or a static unit not running, not starting it. 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74420 files and directories currently installed.) 100s Preparing to unpack .../libc6_2.39-3.1ubuntu2_amd64.deb ... 100s Unpacking libc6:amd64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 101s Setting up libc6:amd64 (2.39-3.1ubuntu2) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74420 files and directories currently installed.) 101s Preparing to unpack .../libc-bin_2.39-3.1ubuntu2_amd64.deb ... 101s Unpacking libc-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 101s Setting up libc-bin (2.39-3.1ubuntu2) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74420 files and directories currently installed.) 102s Preparing to unpack .../locales_2.39-3.1ubuntu2_all.deb ... 102s Unpacking locales (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 102s Setting up motd-news-config (13.3ubuntu2) ... 102s Setting up locales (2.39-3.1ubuntu2) ... 103s Generating locales (this might take a while)... 105s en_US.UTF-8... done 105s Generation complete. 105s Setting up libc-dev-bin (2.39-3.1ubuntu2) ... 105s Setting up libc-devtools (2.39-3.1ubuntu2) ... 105s Setting up libc6-dev:amd64 (2.39-3.1ubuntu2) ... 105s Processing triggers for man-db (2.12.1-2) ... 106s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-1ubuntu7) ... 106s update-initramfs: deferring update (trigger activated) 106s Processing triggers for install-info (7.1-3build2) ... 107s Processing triggers for initramfs-tools (0.142ubuntu28) ... 107s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 107s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 120s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 120s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 120s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 122s Reading package lists... 122s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s Calculating upgrade... 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s autopkgtest [23:29:23]: rebooting testbed after setup commands that affected boot 128s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 147s autopkgtest [23:29:45]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 151s autopkgtest [23:29:49]: @@@@@@@@@@@@@@@@@@@@ apt-source unifrac 154s Get:1 http://ftpmaster.internal/ubuntu oracular/universe unifrac 1.3-2build1 (dsc) [2259 B] 154s Get:2 http://ftpmaster.internal/ubuntu oracular/universe unifrac 1.3-2build1 (tar) [65.9 kB] 154s Get:3 http://ftpmaster.internal/ubuntu oracular/universe unifrac 1.3-2build1 (diff) [7492 B] 154s gpgv: Signature made Wed Apr 10 09:52:51 2024 UTC 154s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-2build1.dsc: no acceptable signature found 154s autopkgtest [23:29:52]: testing package unifrac version 1.3-2build1 162s autopkgtest [23:30:00]: build not needed 171s autopkgtest [23:30:09]: test run-unit-test: preparing testbed 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 183s Starting pkgProblemResolver with broken count: 0 183s Starting 2 pkgProblemResolver with broken count: 0 183s Done 184s The following additional packages will be installed: 184s blt build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 184s fonts-lyx g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 184s gcc-13-base gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu libaec0 libasan8 184s libatomic1 libblas3 libcc1-0 libgcc-13-dev libgfortran5 libgomp1 184s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 184s libhdf5-hl-100t64 libhwasan0 libimagequant0 libisl23 libitm1 libjs-jquery 184s libjs-jquery-ui liblapack3 liblapacke liblbfgsb0 liblcms2-2 liblsan0 liblzf1 184s libmpc3 libopenjp2-7 libqhull-r8.0 libquadmath0 libraqm0 libssu0 libssw0 184s libstdc++-13-dev libsz2 libtcl8.6 libtk8.6 libtmglib3 libtsan2 libubsan1 184s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 184s python-matplotlib-data python3-all python3-appdirs python3-asttokens 184s python3-biom-format python3-brotli python3-click python3-colorama 184s python3-contourpy python3-cycler python3-dateutil python3-decorator 184s python3-executing python3-fonttools python3-fs python3-h5py 184s python3-h5py-serial python3-hdmedians python3-iow python3-ipython 184s python3-jedi python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 184s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 184s python3-packaging python3-pandas python3-pandas-lib python3-parso 184s python3-pexpect python3-pil python3-pil.imagetk python3-prompt-toolkit 184s python3-ptyprocess python3-pure-eval python3-scipy python3-skbio 184s python3-stack-data python3-sympy python3-tk python3-traitlets 184s python3-typeshed python3-ufolib2 python3-unicodedata2 python3-unifrac 184s python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 184s Suggested packages: 184s blt-demo cpp-doc gcc-13-locales cpp-13-doc g++-multilib g++-13-multilib 184s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 184s gdb gcc-doc gcc-13-multilib gdb-x86-64-linux-gnu libjs-jquery-ui-docs 184s liblcms2-utils libstdc++-13-doc tcl8.6 tk8.6 python-biom-format-doc 184s python-cycler-doc python-h5py-doc python-ipython-doc python-lxml-doc 184s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 184s inkscape ipython3 librsvg2-common python3-cairocffi python3-gi-cairo 184s python3-gobject python3-pyqt5 python3-sip python3-tornado 184s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 184s python-natsort-doc gfortran python-numpy-doc python3-dev python3-pytest 184s python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc 184s python-scipy-doc python-skbio-doc texlive-fonts-extra python-sympy-doc tix 184s python3-tk-dbg 184s Recommended packages: 184s javascript-common python3-bs4 python3-cssselect python3-html5lib 184s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 184s python3-tables python3-numba python3-olefile isympy-common 184s The following NEW packages will be installed: 184s autopkgtest-satdep blt build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu 184s cpp-x86-64-linux-gnu fonts-lyx g++ g++-13 g++-13-x86-64-linux-gnu 184s g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu 184s gcc-x86-64-linux-gnu libaec0 libasan8 libatomic1 libblas3 libcc1-0 184s libgcc-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 184s libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-hl-100t64 libhwasan0 184s libimagequant0 libisl23 libitm1 libjs-jquery libjs-jquery-ui liblapack3 184s liblapacke liblbfgsb0 liblcms2-2 liblsan0 liblzf1 libmpc3 libopenjp2-7 184s libqhull-r8.0 libquadmath0 libraqm0 libssu0 libssw0 libstdc++-13-dev libsz2 184s libtcl8.6 libtk8.6 libtmglib3 libtsan2 libubsan1 libwebpdemux2 libwebpmux3 184s libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 184s python3-appdirs python3-asttokens python3-biom-format python3-brotli 184s python3-click python3-colorama python3-contourpy python3-cycler 184s python3-dateutil python3-decorator python3-executing python3-fonttools 184s python3-fs python3-h5py python3-h5py-serial python3-hdmedians python3-iow 184s python3-ipython python3-jedi python3-kiwisolver python3-lxml python3-lz4 184s python3-matplotlib python3-matplotlib-inline python3-mpmath python3-natsort 184s python3-numpy python3-packaging python3-pandas python3-pandas-lib 184s python3-parso python3-pexpect python3-pil python3-pil.imagetk 184s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-scipy 184s python3-skbio python3-stack-data python3-sympy python3-tk python3-traitlets 184s python3-typeshed python3-ufolib2 python3-unicodedata2 python3-unifrac 184s python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 184s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 184s Need to get 134 MB/134 MB of archives. 184s After this operation, 549 MB of additional disk space will be used. 184s Get:1 /tmp/autopkgtest.AtkIqq/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [724 B] 184s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 184s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 184s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 184s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 184s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 184s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 184s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 184s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 184s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB] 184s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB] 184s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB] 184s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.2 MB] 184s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13 amd64 13.2.0-23ubuntu4 [1032 B] 184s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 184s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 184s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14.1.0-1ubuntu1 [48.0 kB] 184s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 184s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-1ubuntu1 [29.1 kB] 184s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB] 184s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-1ubuntu1 [3025 kB] 184s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-1ubuntu1 [1313 kB] 184s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-1ubuntu1 [2736 kB] 185s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB] 185s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-1ubuntu1 [1632 kB] 185s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-1ubuntu1 [153 kB] 185s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB] 185s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [21.9 MB] 185s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13 amd64 13.2.0-23ubuntu4 [482 kB] 185s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 185s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 185s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB] 185s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [12.5 MB] 185s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13 amd64 13.2.0-23ubuntu4 [14.5 kB] 185s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 185s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 185s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 185s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.0-1 [171 kB] 185s Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 185s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 185s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 185s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 185s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 185s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 185s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 185s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [128 kB] 185s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 185s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 185s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 185s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 185s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 185s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 libtmglib3 amd64 3.12.0-3build1 [141 kB] 185s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapacke amd64 3.12.0-3build1 [412 kB] 185s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 185s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 185s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 185s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 185s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 185s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 libssu0 amd64 1.4-3build2 [163 kB] 185s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 libssw0 amd64 1.1-14build1 [22.1 kB] 185s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 185s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 185s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 185s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 185s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 185s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 185s Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-asttokens all 2.4.1-1 [20.9 kB] 185s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 185s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB] 185s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 185s Get:71 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 185s Get:72 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB] 185s Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 185s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB] 185s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 185s Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 185s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 185s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-biom-format amd64 2.1.16-1 [141 kB] 185s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 185s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 185s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 185s Get:82 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-executing all 2.0.1-0.1 [23.3 kB] 185s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 185s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 185s Get:85 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 185s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 185s Get:87 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 185s Get:88 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 185s Get:89 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 185s Get:90 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 186s Get:91 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 186s Get:92 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-hdmedians amd64 0.14.2-5.1build1 [124 kB] 186s Get:93 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-parso all 0.8.3-1 [67.2 kB] 186s Get:94 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 186s Get:95 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-jedi all 0.19.1+ds1-1 [693 kB] 186s Get:96 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-traitlets all 5.5.0-2 [85.0 kB] 186s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 186s Get:98 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-ptyprocess all 0.7.0-5 [15.1 kB] 186s Get:99 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pexpect all 4.9-2 [48.1 kB] 186s Get:100 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB] 186s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-prompt-toolkit all 3.0.47-1 [256 kB] 186s Get:102 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pure-eval all 0.2.2-2 [11.1 kB] 186s Get:103 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-stack-data all 0.6.3-1 [22.0 kB] 186s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ipython all 8.20.0-1ubuntu1 [561 kB] 186s Get:105 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 186s Get:106 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB] 186s Get:107 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 186s Get:108 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B] 186s Get:109 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 186s Get:110 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 186s Get:111 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB] 186s Get:112 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB] 186s Get:113 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skbio amd64 0.5.9-4build1 [750 kB] 186s Get:114 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iow amd64 1.0.6-5 [387 kB] 186s Get:115 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unifrac amd64 1.3-2build1 [153 kB] 186s Fetched 134 MB in 2s (83.3 MB/s) 186s Selecting previously unselected package libtcl8.6:amd64. 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74420 files and directories currently installed.) 187s Preparing to unpack .../000-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 187s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 187s Selecting previously unselected package libxrender1:amd64. 187s Preparing to unpack .../001-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 187s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 187s Selecting previously unselected package libxft2:amd64. 187s Preparing to unpack .../002-libxft2_2.3.6-1build1_amd64.deb ... 187s Unpacking libxft2:amd64 (2.3.6-1build1) ... 187s Selecting previously unselected package x11-common. 187s Preparing to unpack .../003-x11-common_1%3a7.7+23ubuntu3_all.deb ... 187s Unpacking x11-common (1:7.7+23ubuntu3) ... 187s Selecting previously unselected package libxss1:amd64. 187s Preparing to unpack .../004-libxss1_1%3a1.2.3-1build3_amd64.deb ... 187s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 187s Selecting previously unselected package libtk8.6:amd64. 187s Preparing to unpack .../005-libtk8.6_8.6.14-1build1_amd64.deb ... 187s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 187s Selecting previously unselected package tk8.6-blt2.5. 187s Preparing to unpack .../006-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 187s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 187s Selecting previously unselected package blt. 187s Preparing to unpack .../007-blt_2.5.3+dfsg-7build1_amd64.deb ... 187s Unpacking blt (2.5.3+dfsg-7build1) ... 187s Selecting previously unselected package gcc-13-base:amd64. 187s Preparing to unpack .../008-gcc-13-base_13.2.0-23ubuntu4_amd64.deb ... 187s Unpacking gcc-13-base:amd64 (13.2.0-23ubuntu4) ... 187s Selecting previously unselected package libisl23:amd64. 187s Preparing to unpack .../009-libisl23_0.26-3build1_amd64.deb ... 187s Unpacking libisl23:amd64 (0.26-3build1) ... 187s Selecting previously unselected package libmpc3:amd64. 187s Preparing to unpack .../010-libmpc3_1.3.1-1build1_amd64.deb ... 187s Unpacking libmpc3:amd64 (1.3.1-1build1) ... 187s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 187s Preparing to unpack .../011-cpp-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 187s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 188s Selecting previously unselected package cpp-13. 188s Preparing to unpack .../012-cpp-13_13.2.0-23ubuntu4_amd64.deb ... 188s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 188s Selecting previously unselected package cpp-x86-64-linux-gnu. 188s Preparing to unpack .../013-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 188s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package cpp. 188s Preparing to unpack .../014-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 188s Unpacking cpp (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package libcc1-0:amd64. 188s Preparing to unpack .../015-libcc1-0_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking libcc1-0:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package libgomp1:amd64. 188s Preparing to unpack .../016-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package libitm1:amd64. 188s Preparing to unpack .../017-libitm1_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking libitm1:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package libatomic1:amd64. 188s Preparing to unpack .../018-libatomic1_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package libasan8:amd64. 188s Preparing to unpack .../019-libasan8_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking libasan8:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package liblsan0:amd64. 188s Preparing to unpack .../020-liblsan0_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking liblsan0:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package libtsan2:amd64. 188s Preparing to unpack .../021-libtsan2_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking libtsan2:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package libubsan1:amd64. 188s Preparing to unpack .../022-libubsan1_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking libubsan1:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package libhwasan0:amd64. 188s Preparing to unpack .../023-libhwasan0_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking libhwasan0:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package libquadmath0:amd64. 188s Preparing to unpack .../024-libquadmath0_14.1.0-1ubuntu1_amd64.deb ... 188s Unpacking libquadmath0:amd64 (14.1.0-1ubuntu1) ... 188s Selecting previously unselected package libgcc-13-dev:amd64. 188s Preparing to unpack .../025-libgcc-13-dev_13.2.0-23ubuntu4_amd64.deb ... 188s Unpacking libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ... 189s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 189s Preparing to unpack .../026-gcc-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 189s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 189s Selecting previously unselected package gcc-13. 189s Preparing to unpack .../027-gcc-13_13.2.0-23ubuntu4_amd64.deb ... 189s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 189s Selecting previously unselected package gcc-x86-64-linux-gnu. 189s Preparing to unpack .../028-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 189s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 189s Selecting previously unselected package gcc. 189s Preparing to unpack .../029-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 189s Unpacking gcc (4:13.2.0-7ubuntu1) ... 189s Selecting previously unselected package libstdc++-13-dev:amd64. 189s Preparing to unpack .../030-libstdc++-13-dev_13.2.0-23ubuntu4_amd64.deb ... 189s Unpacking libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ... 189s Selecting previously unselected package g++-13-x86-64-linux-gnu. 189s Preparing to unpack .../031-g++-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 189s Unpacking g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 190s Selecting previously unselected package g++-13. 190s Preparing to unpack .../032-g++-13_13.2.0-23ubuntu4_amd64.deb ... 190s Unpacking g++-13 (13.2.0-23ubuntu4) ... 190s Selecting previously unselected package g++-x86-64-linux-gnu. 190s Preparing to unpack .../033-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 190s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 190s Selecting previously unselected package g++. 190s Preparing to unpack .../034-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 190s Unpacking g++ (4:13.2.0-7ubuntu1) ... 190s Selecting previously unselected package build-essential. 190s Preparing to unpack .../035-build-essential_12.10ubuntu1_amd64.deb ... 190s Unpacking build-essential (12.10ubuntu1) ... 190s Selecting previously unselected package fonts-lyx. 190s Preparing to unpack .../036-fonts-lyx_2.4.0-1_all.deb ... 190s Unpacking fonts-lyx (2.4.0-1) ... 190s Selecting previously unselected package libaec0:amd64. 190s Preparing to unpack .../037-libaec0_1.1.3-1_amd64.deb ... 190s Unpacking libaec0:amd64 (1.1.3-1) ... 190s Selecting previously unselected package libblas3:amd64. 190s Preparing to unpack .../038-libblas3_3.12.0-3build1_amd64.deb ... 190s Unpacking libblas3:amd64 (3.12.0-3build1) ... 190s Selecting previously unselected package libgfortran5:amd64. 190s Preparing to unpack .../039-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 190s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 190s Selecting previously unselected package libgraphite2-3:amd64. 190s Preparing to unpack .../040-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 190s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 190s Selecting previously unselected package libharfbuzz0b:amd64. 190s Preparing to unpack .../041-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 190s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 190s Selecting previously unselected package libsz2:amd64. 190s Preparing to unpack .../042-libsz2_1.1.3-1_amd64.deb ... 190s Unpacking libsz2:amd64 (1.1.3-1) ... 190s Selecting previously unselected package libhdf5-103-1t64:amd64. 190s Preparing to unpack .../043-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 190s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 190s Selecting previously unselected package libhdf5-cpp-103-1t64:amd64. 190s Preparing to unpack .../044-libhdf5-cpp-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 190s Unpacking libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 190s Selecting previously unselected package libhdf5-hl-100t64:amd64. 190s Preparing to unpack .../045-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 190s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 190s Selecting previously unselected package libimagequant0:amd64. 190s Preparing to unpack .../046-libimagequant0_2.18.0-1build1_amd64.deb ... 190s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 190s Selecting previously unselected package libjs-jquery. 190s Preparing to unpack .../047-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 190s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 190s Selecting previously unselected package libjs-jquery-ui. 190s Preparing to unpack .../048-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 190s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 190s Selecting previously unselected package liblapack3:amd64. 190s Preparing to unpack .../049-liblapack3_3.12.0-3build1_amd64.deb ... 190s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 190s Selecting previously unselected package libtmglib3:amd64. 191s Preparing to unpack .../050-libtmglib3_3.12.0-3build1_amd64.deb ... 191s Unpacking libtmglib3:amd64 (3.12.0-3build1) ... 191s Selecting previously unselected package liblapacke:amd64. 191s Preparing to unpack .../051-liblapacke_3.12.0-3build1_amd64.deb ... 191s Unpacking liblapacke:amd64 (3.12.0-3build1) ... 191s Selecting previously unselected package liblbfgsb0:amd64. 191s Preparing to unpack .../052-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 191s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 191s Selecting previously unselected package liblcms2-2:amd64. 191s Preparing to unpack .../053-liblcms2-2_2.14-2build1_amd64.deb ... 191s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 191s Selecting previously unselected package liblzf1:amd64. 191s Preparing to unpack .../054-liblzf1_3.6-4_amd64.deb ... 191s Unpacking liblzf1:amd64 (3.6-4) ... 191s Selecting previously unselected package libqhull-r8.0:amd64. 191s Preparing to unpack .../055-libqhull-r8.0_2020.2-6build1_amd64.deb ... 191s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 191s Selecting previously unselected package libraqm0:amd64. 191s Preparing to unpack .../056-libraqm0_0.10.1-1build1_amd64.deb ... 191s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 191s Selecting previously unselected package libssu0:amd64. 191s Preparing to unpack .../057-libssu0_1.4-3build2_amd64.deb ... 191s Unpacking libssu0:amd64 (1.4-3build2) ... 191s Selecting previously unselected package libssw0:amd64. 191s Preparing to unpack .../058-libssw0_1.1-14build1_amd64.deb ... 191s Unpacking libssw0:amd64 (1.1-14build1) ... 191s Selecting previously unselected package libwebpdemux2:amd64. 191s Preparing to unpack .../059-libwebpdemux2_1.4.0-0.1_amd64.deb ... 191s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 191s Selecting previously unselected package libwebpmux3:amd64. 191s Preparing to unpack .../060-libwebpmux3_1.4.0-0.1_amd64.deb ... 191s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 191s Selecting previously unselected package libxslt1.1:amd64. 191s Preparing to unpack .../061-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 191s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 191s Selecting previously unselected package python-matplotlib-data. 191s Preparing to unpack .../062-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 191s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 191s Selecting previously unselected package python3-all. 191s Preparing to unpack .../063-python3-all_3.12.3-0ubuntu1_amd64.deb ... 191s Unpacking python3-all (3.12.3-0ubuntu1) ... 191s Selecting previously unselected package python3-appdirs. 191s Preparing to unpack .../064-python3-appdirs_1.4.4-4_all.deb ... 191s Unpacking python3-appdirs (1.4.4-4) ... 191s Selecting previously unselected package python3-asttokens. 191s Preparing to unpack .../065-python3-asttokens_2.4.1-1_all.deb ... 191s Unpacking python3-asttokens (2.4.1-1) ... 191s Selecting previously unselected package python3-numpy. 191s Preparing to unpack .../066-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 191s Unpacking python3-numpy (1:1.26.4+ds-10) ... 192s Selecting previously unselected package python3-h5py-serial. 192s Preparing to unpack .../067-python3-h5py-serial_3.10.0-1ubuntu3_amd64.deb ... 192s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 192s Selecting previously unselected package python3-h5py. 192s Preparing to unpack .../068-python3-h5py_3.10.0-1ubuntu3_all.deb ... 192s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 192s Selecting previously unselected package python3-colorama. 192s Preparing to unpack .../069-python3-colorama_0.4.6-4_all.deb ... 192s Unpacking python3-colorama (0.4.6-4) ... 192s Selecting previously unselected package python3-click. 192s Preparing to unpack .../070-python3-click_8.1.7-1_all.deb ... 192s Unpacking python3-click (8.1.7-1) ... 192s Selecting previously unselected package python3-dateutil. 192s Preparing to unpack .../071-python3-dateutil_2.9.0-2_all.deb ... 192s Unpacking python3-dateutil (2.9.0-2) ... 192s Selecting previously unselected package python3-pandas-lib:amd64. 192s Preparing to unpack .../072-python3-pandas-lib_2.1.4+dfsg-8_amd64.deb ... 192s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 192s Selecting previously unselected package python3-pandas. 192s Preparing to unpack .../073-python3-pandas_2.1.4+dfsg-8_all.deb ... 192s Unpacking python3-pandas (2.1.4+dfsg-8) ... 192s Selecting previously unselected package python3-decorator. 192s Preparing to unpack .../074-python3-decorator_5.1.1-5_all.deb ... 192s Unpacking python3-decorator (5.1.1-5) ... 192s Selecting previously unselected package python3-scipy. 192s Preparing to unpack .../075-python3-scipy_1.12.0-2_amd64.deb ... 192s Unpacking python3-scipy (1.12.0-2) ... 193s Selecting previously unselected package python3-biom-format. 193s Preparing to unpack .../076-python3-biom-format_2.1.16-1_amd64.deb ... 193s Unpacking python3-biom-format (2.1.16-1) ... 193s Selecting previously unselected package python3-brotli. 193s Preparing to unpack .../077-python3-brotli_1.1.0-2build2_amd64.deb ... 193s Unpacking python3-brotli (1.1.0-2build2) ... 193s Selecting previously unselected package python3-contourpy. 193s Preparing to unpack .../078-python3-contourpy_1.0.7-3_amd64.deb ... 193s Unpacking python3-contourpy (1.0.7-3) ... 193s Selecting previously unselected package python3-cycler. 193s Preparing to unpack .../079-python3-cycler_0.12.1-1_all.deb ... 193s Unpacking python3-cycler (0.12.1-1) ... 193s Selecting previously unselected package python3-executing. 193s Preparing to unpack .../080-python3-executing_2.0.1-0.1_all.deb ... 193s Unpacking python3-executing (2.0.1-0.1) ... 193s Selecting previously unselected package python3-ufolib2. 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python3-typeshed. 195s Preparing to unpack .../092-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 195s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 195s Selecting previously unselected package python3-jedi. 195s Preparing to unpack .../093-python3-jedi_0.19.1+ds1-1_all.deb ... 195s Unpacking python3-jedi (0.19.1+ds1-1) ... 196s Selecting previously unselected package python3-traitlets. 196s Preparing to unpack .../094-python3-traitlets_5.5.0-2_all.deb ... 196s Unpacking python3-traitlets (5.5.0-2) ... 196s Selecting previously unselected package python3-matplotlib-inline. 196s Preparing to unpack .../095-python3-matplotlib-inline_0.1.6-2_all.deb ... 196s Unpacking python3-matplotlib-inline (0.1.6-2) ... 196s Selecting previously unselected package python3-ptyprocess. 196s Preparing to unpack .../096-python3-ptyprocess_0.7.0-5_all.deb ... 196s Unpacking python3-ptyprocess (0.7.0-5) ... 196s Selecting previously unselected package python3-pexpect. 196s Preparing to unpack .../097-python3-pexpect_4.9-2_all.deb ... 196s Unpacking python3-pexpect (4.9-2) ... 196s Selecting previously unselected package python3-wcwidth. 196s Preparing to unpack .../098-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ... 196s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 196s Selecting previously unselected package python3-prompt-toolkit. 196s Preparing to unpack .../099-python3-prompt-toolkit_3.0.47-1_all.deb ... 196s Unpacking python3-prompt-toolkit (3.0.47-1) ... 196s Selecting previously unselected package python3-pure-eval. 196s Preparing to unpack .../100-python3-pure-eval_0.2.2-2_all.deb ... 196s Unpacking python3-pure-eval (0.2.2-2) ... 196s Selecting previously unselected package python3-stack-data. 196s Preparing to unpack .../101-python3-stack-data_0.6.3-1_all.deb ... 196s Unpacking python3-stack-data (0.6.3-1) ... 196s Selecting previously unselected package python3-ipython. 196s Preparing to unpack .../102-python3-ipython_8.20.0-1ubuntu1_all.deb ... 196s Unpacking python3-ipython (8.20.0-1ubuntu1) ... 196s Selecting previously unselected package libopenjp2-7:amd64. 196s Preparing to unpack .../103-libopenjp2-7_2.5.0-2build3_amd64.deb ... 196s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 196s Selecting previously unselected package python3-pil:amd64. 196s Preparing to unpack .../104-python3-pil_10.3.0-2_amd64.deb ... 196s Unpacking python3-pil:amd64 (10.3.0-2) ... 197s Selecting previously unselected package python3-tk:amd64. 197s Preparing to unpack .../105-python3-tk_3.12.3-0ubuntu1_amd64.deb ... 197s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ... 197s Selecting previously unselected package python3-pil.imagetk:amd64. 197s Preparing to unpack .../106-python3-pil.imagetk_10.3.0-2_amd64.deb ... 197s Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ... 197s Selecting previously unselected package python3-kiwisolver. 197s Preparing to unpack .../107-python3-kiwisolver_1.4.5-1_amd64.deb ... 197s Unpacking python3-kiwisolver (1.4.5-1) ... 197s Selecting previously unselected package python3-packaging. 197s Preparing to unpack .../108-python3-packaging_24.0-1_all.deb ... 197s Unpacking python3-packaging (24.0-1) ... 197s Selecting previously unselected package python3-matplotlib. 197s Preparing to unpack .../109-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ... 197s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 197s Selecting previously unselected package python3-natsort. 197s Preparing to unpack .../110-python3-natsort_8.0.2-2_all.deb ... 197s Unpacking python3-natsort (8.0.2-2) ... 197s Selecting previously unselected package python3-skbio. 197s Preparing to unpack .../111-python3-skbio_0.5.9-4build1_amd64.deb ... 197s Unpacking python3-skbio (0.5.9-4build1) ... 197s Selecting previously unselected package python3-iow. 197s Preparing to unpack .../112-python3-iow_1.0.6-5_amd64.deb ... 197s Unpacking python3-iow (1.0.6-5) ... 197s Selecting previously unselected package python3-unifrac. 197s Preparing to unpack .../113-python3-unifrac_1.3-2build1_amd64.deb ... 197s Unpacking python3-unifrac (1.3-2build1) ... 197s Selecting previously unselected package autopkgtest-satdep. 197s Preparing to unpack .../114-1-autopkgtest-satdep.deb ... 197s Unpacking autopkgtest-satdep (0) ... 197s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 197s Setting up liblcms2-2:amd64 (2.14-2build1) ... 197s Setting up python3-pure-eval (0.2.2-2) ... 197s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 197s Setting up python3-parso (0.8.3-1) ... 198s Setting up python3-colorama (0.4.6-4) ... 198s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 198s Setting up python3-asttokens (2.4.1-1) ... 198s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 198s Setting up fonts-lyx (2.4.0-1) ... 198s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 198s Setting up x11-common (1:7.7+23ubuntu3) ... 199s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 199s Setting up python3-all (3.12.3-0ubuntu1) ... 199s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 199s Setting up python3-click (8.1.7-1) ... 199s Setting up libaec0:amd64 (1.1.3-1) ... 199s Setting up python3-natsort (8.0.2-2) ... 199s Setting up unicode-data (15.1.0-1) ... 199s Setting up python3-decorator (5.1.1-5) ... 199s Setting up libblas3:amd64 (3.12.0-3build1) ... 199s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 199s Setting up python3-packaging (24.0-1) ... 199s Setting up gcc-13-base:amd64 (13.2.0-23ubuntu4) ... 199s Setting up python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 200s Setting up python3-typeshed (0.0~git20231111.6764465-3) ... 200s Setting up python3-executing (2.0.1-0.1) ... 200s Setting up python3-brotli (1.1.0-2build2) ... 200s Setting up liblzf1:amd64 (3.6-4) ... 200s Setting up libquadmath0:amd64 (14.1.0-1ubuntu1) ... 200s Setting up python3-cycler (0.12.1-1) ... 200s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 200s Setting up python3-kiwisolver (1.4.5-1) ... 200s Setting up libmpc3:amd64 (1.3.1-1build1) ... 200s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ... 200s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 200s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 200s Setting up libubsan1:amd64 (14.1.0-1ubuntu1) ... 200s Setting up libhwasan0:amd64 (14.1.0-1ubuntu1) ... 200s Setting up python3-traitlets (5.5.0-2) ... 201s Setting up libasan8:amd64 (14.1.0-1ubuntu1) ... 201s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 201s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 201s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... 201s Setting up python3-dateutil (2.9.0-2) ... 201s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 201s Setting up libtsan2:amd64 (14.1.0-1ubuntu1) ... 201s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 201s Setting up python3-mpmath (1.3.0-1) ... 202s Setting up libisl23:amd64 (0.26-3build1) ... 202s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 202s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 202s Setting up python3-appdirs (1.4.4-4) ... 202s Setting up python3-stack-data (0.6.3-1) ... 202s Setting up libssw0:amd64 (1.1-14build1) ... 202s Setting up libcc1-0:amd64 (14.1.0-1ubuntu1) ... 202s Setting up liblsan0:amd64 (14.1.0-1ubuntu1) ... 202s Setting up libsz2:amd64 (1.1.3-1) ... 202s Setting up libitm1:amd64 (14.1.0-1ubuntu1) ... 202s Setting up python3-ptyprocess (0.7.0-5) ... 202s Setting up python3-prompt-toolkit (3.0.47-1) ... 203s Setting up python3-sympy (1.12-8) ... 211s Setting up liblapack3:amd64 (3.12.0-3build1) ... 211s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 211s Setting up libxft2:amd64 (2.3.6-1build1) ... 211s Setting up python3-jedi (0.19.1+ds1-1) ... 211s Setting up cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 211s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 211s Setting up python3-matplotlib-inline (0.1.6-2) ... 212s Setting up python3-fs (2.4.16-4) ... 212s Setting up libtmglib3:amd64 (3.12.0-3build1) ... 212s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 212s Setting up python3-pexpect (4.9-2) ... 212s Setting up libraqm0:amd64 (0.10.1-1build1) ... 212s Setting up python3-numpy (1:1.26.4+ds-10) ... 215s Setting up python3-hdmedians (0.14.2-5.1build1) ... 215s Setting up libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ... 215s Setting up python3-lxml:amd64 (5.2.1-1) ... 215s Setting up liblapacke:amd64 (3.12.0-3build1) ... 215s Setting up python3-contourpy (1.0.7-3) ... 215s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 215s Setting up libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ... 215s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 215s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 215s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 215s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 215s Setting up python3-scipy (1.12.0-2) ... 220s Setting up cpp-13 (13.2.0-23ubuntu4) ... 220s Setting up gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 220s Setting up blt (2.5.3+dfsg-7build1) ... 220s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 220s Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 220s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 220s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ... 220s Setting up python3-pil:amd64 (10.3.0-2) ... 221s Setting up python3-pandas (2.1.4+dfsg-8) ... 228s Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... 228s Setting up python3-ipython (8.20.0-1ubuntu1) ... 229s Setting up python3-h5py (3.10.0-1ubuntu3) ... 229s Setting up gcc-13 (13.2.0-23ubuntu4) ... 229s Setting up cpp (4:13.2.0-7ubuntu1) ... 229s Setting up g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 229s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 229s Setting up libssu0:amd64 (1.4-3build2) ... 229s Setting up gcc (4:13.2.0-7ubuntu1) ... 229s Setting up python3-biom-format (2.1.16-1) ... 229s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 229s Setting up g++-13 (13.2.0-23ubuntu4) ... 229s Setting up g++ (4:13.2.0-7ubuntu1) ... 229s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 229s Setting up build-essential (12.10ubuntu1) ... 229s Setting up python3-fonttools (4.46.0-1build2) ... 230s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 230s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 232s Setting up python3-skbio (0.5.9-4build1) ... 233s Setting up python3-iow (1.0.6-5) ... 235s Setting up python3-unifrac (1.3-2build1) ... 235s Setting up autopkgtest-satdep (0) ... 235s Processing triggers for libc-bin (2.39-3.1ubuntu2) ... 235s Processing triggers for man-db (2.12.1-2) ... 249s (Reading database ... 92653 files and directories currently installed.) 249s Removing autopkgtest-satdep (0) ... 250s autopkgtest [23:31:28]: test run-unit-test: [----------------------- 250s Test 4 -- Unifrac python tests 252s test_ssu_table_not_subset_tree (tests.test_api.EdgeCasesTests.test_ssu_table_not_subset_tree) ... ok 252s test_unweighted_extra_tips (tests.test_api.EdgeCasesTests.test_unweighted_extra_tips) ... ok 252s test_unweighted_minimal_trees (tests.test_api.EdgeCasesTests.test_unweighted_minimal_trees) ... ok 253s test_unweighted_otus_out_of_order (tests.test_api.EdgeCasesTests.test_unweighted_otus_out_of_order) ... ok 253s test_unweighted_root_not_observed (tests.test_api.EdgeCasesTests.test_unweighted_root_not_observed) ... ok 253s test_unweighted_unifrac (tests.test_api.EdgeCasesTests.test_unweighted_unifrac) ... ok 253s test_unweighted_unifrac_identity (tests.test_api.EdgeCasesTests.test_unweighted_unifrac_identity) ... ok 253s test_unweighted_unifrac_non_overlapping (tests.test_api.EdgeCasesTests.test_unweighted_unifrac_non_overlapping) ... ok 254s test_unweighted_unifrac_symmetry (tests.test_api.EdgeCasesTests.test_unweighted_unifrac_symmetry) ... ok 254s test_weighted_extra_tips (tests.test_api.EdgeCasesTests.test_weighted_extra_tips) ... ok 254s test_weighted_normalized_root_not_observed (tests.test_api.EdgeCasesTests.test_weighted_normalized_root_not_observed) ... ok 255s test_weighted_otus_out_of_order (tests.test_api.EdgeCasesTests.test_weighted_otus_out_of_order) ... ok 255s test_weighted_root_not_observed (tests.test_api.EdgeCasesTests.test_weighted_root_not_observed) ... ok 255s test_weighted_unifrac (tests.test_api.EdgeCasesTests.test_weighted_unifrac) ... ok 255s test_weighted_unifrac_identity (tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity) ... ok 255s test_weighted_unifrac_identity_normalized (tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity_normalized) ... ok 255s test_weighted_unifrac_non_overlapping (tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping) ... ok 255s test_weighted_unifrac_non_overlapping_normalized (tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping_normalized) ... ok 255s test_weighted_unifrac_normalized (tests.test_api.EdgeCasesTests.test_weighted_unifrac_normalized) ... ok 256s test_weighted_unifrac_symmetry (tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry) ... ok 256s test_weighted_unifrac_symmetry_normalized (tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry_normalized) ... ok 256s test_faith_pd (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd) ... WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s ok 256s test_faith_pd_all_observed (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_all_observed) ... ok 256s test_faith_pd_biom_table_empty (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_biom_table_empty) ... ok 256s test_faith_pd_extra_tips (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_extra_tips) ... WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s WARNING: Some samples had zero counts and were filtered out. 256s ok 256s test_faith_pd_invalid_input (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_invalid_input) ... ok 256s test_faith_pd_minimal (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_minimal) ... WARNING: Some samples had zero counts and were filtered out. 256s ok 256s test_faith_pd_none_observed (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_none_observed) ... WARNING: All samples had zero counts. Forcing zero result. 256s ok 256s test_faith_pd_root_not_observed (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_root_not_observed) ... WARNING: Some samples had zero counts and were filtered out. 256s /tmp/autopkgtest.AtkIqq/build.xac/src/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 256s self.assertAlmostEqual(actual[0], expected) 256s WARNING: Some samples had zero counts and were filtered out. 256s /tmp/autopkgtest.AtkIqq/build.xac/src/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 256s self.assertAlmostEqual(actual[0], expected) 256s ok 256s test_faith_pd_series_name (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_series_name) ... WARNING: Some samples had zero counts and were filtered out. 256s ok 256s test_faith_pd_table_not_subset_tree (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_table_not_subset_tree) ... ok 256s test_faith_pd_zero_branches_omitted (tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_zero_branches_omitted) ... WARNING: Some samples had zero counts and were filtered out. 256s /tmp/autopkgtest.AtkIqq/build.xac/src/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 256s self.assertAlmostEqual(actual[0], expected) 256s ok 256s test_meta_unifrac (tests.test_api.UnifracAPITests.test_meta_unifrac) ... ok 256s test_ssu_bad_method (tests.test_api.UnifracAPITests.test_ssu_bad_method) ... ok 256s test_ssu_bad_table (tests.test_api.UnifracAPITests.test_ssu_bad_table) ... ok 256s test_ssu_bad_tree (tests.test_api.UnifracAPITests.test_ssu_bad_tree) ... ok 256s test_unweighted_fp32_inmem (tests.test_api.UnifracAPITests.test_unweighted_fp32_inmem) ... ok 257s test_unweighted_fp64_inmem (tests.test_api.UnifracAPITests.test_unweighted_fp64_inmem) ... ok 257s test_unweighted_inmem (tests.test_api.UnifracAPITests.test_unweighted_inmem) ... ok 257s test_unweighted_root_eval_issue_46 (tests.test_api.UnifracAPITests.test_unweighted_root_eval_issue_46) ... ok 257s test_meta_unifrac (tests.test_methods.StateUnifracTests.test_meta_unifrac) 257s meta_unifrac should give correct result on sample trees ... ok 257s test_meta_unifrac_alpha_not_generalized (tests.test_methods.StateUnifracTests.test_meta_unifrac_alpha_not_generalized) ... ok 257s test_meta_unifrac_bad_consolidation (tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_consolidation) ... ok 257s test_meta_unifrac_bad_method (tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_method) ... ok 257s test_meta_unifrac_missing (tests.test_methods.StateUnifracTests.test_meta_unifrac_missing) ... ok 257s test_meta_unifrac_no_method (tests.test_methods.StateUnifracTests.test_meta_unifrac_no_method) ... ok 257s test_meta_unifrac_unbalanced (tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced) ... ok 257s test_meta_unifrac_unbalanced_weights (tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced_weights) ... ok 257s test_meta_validation (tests.test_methods.StateUnifracTests.test_meta_validation) ... ok 257s 257s ---------------------------------------------------------------------- 257s Ran 49 tests in 4.792s 257s 257s OK 257s ====== PASS =========== 257s 257s autopkgtest [23:31:35]: test run-unit-test: -----------------------] 257s run-unit-test PASS 257s autopkgtest [23:31:35]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 258s autopkgtest [23:31:36]: test autodep8-python3: preparing testbed 333s autopkgtest [23:32:51]: testbed dpkg architecture: amd64 333s autopkgtest [23:32:51]: testbed apt version: 2.9.5 333s autopkgtest [23:32:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 333s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 334s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [52.0 kB] 334s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 334s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [370 kB] 334s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 334s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [82.8 kB] 334s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [101 kB] 334s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [28.0 kB] 334s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 334s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [406 kB] 334s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [229 kB] 334s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3368 B] 334s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7968 B] 334s Fetched 1406 kB in 0s (4373 kB/s) 334s Reading package lists... 336s Reading package lists... 336s Building dependency tree... 336s Reading state information... 337s Calculating upgrade... 337s The following packages will be upgraded: 337s base-files libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 337s motd-news-config 337s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 337s Need to get 10.4 MB of archives. 337s After this operation, 35.8 kB of additional disk space will be used. 337s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 motd-news-config all 13.3ubuntu2 [5416 B] 337s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-devtools amd64 2.39-3.1ubuntu2 [29.3 kB] 337s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6-dev amd64 2.39-3.1ubuntu2 [2120 kB] 337s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-dev-bin amd64 2.39-3.1ubuntu2 [20.4 kB] 337s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 base-files amd64 13.3ubuntu2 [75.3 kB] 337s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6 amd64 2.39-3.1ubuntu2 [3261 kB] 337s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-bin amd64 2.39-3.1ubuntu2 [680 kB] 337s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 locales all 2.39-3.1ubuntu2 [4220 kB] 338s Preconfiguring packages ... 338s Fetched 10.4 MB in 0s (85.5 MB/s) 338s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74417 files and directories currently installed.) 338s Preparing to unpack .../motd-news-config_13.3ubuntu2_all.deb ... 338s Unpacking motd-news-config (13.3ubuntu2) over (13.1ubuntu1) ... 338s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu2_amd64.deb ... 338s Unpacking libc-devtools (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 338s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu2_amd64.deb ... 338s Unpacking libc6-dev:amd64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 339s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu2_amd64.deb ... 339s Unpacking libc-dev-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 339s Preparing to unpack .../base-files_13.3ubuntu2_amd64.deb ... 339s Unpacking base-files (13.3ubuntu2) over (13.1ubuntu1) ... 339s Setting up base-files (13.3ubuntu2) ... 339s Updating /etc/profile to current default. 340s motd-news.service is a disabled or a static unit not running, not starting it. 340s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74420 files and directories currently installed.) 340s Preparing to unpack .../libc6_2.39-3.1ubuntu2_amd64.deb ... 340s Unpacking libc6:amd64 (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 341s Setting up libc6:amd64 (2.39-3.1ubuntu2) ... 341s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74420 files and directories currently installed.) 341s Preparing to unpack .../libc-bin_2.39-3.1ubuntu2_amd64.deb ... 341s Unpacking libc-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 341s Setting up libc-bin (2.39-3.1ubuntu2) ... 342s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74420 files and directories currently installed.) 342s Preparing to unpack .../locales_2.39-3.1ubuntu2_all.deb ... 342s Unpacking locales (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 342s Setting up motd-news-config (13.3ubuntu2) ... 342s Setting up locales (2.39-3.1ubuntu2) ... 343s Generating locales (this might take a while)... 345s en_US.UTF-8... done 345s Generation complete. 345s Setting up libc-dev-bin (2.39-3.1ubuntu2) ... 345s Setting up libc-devtools (2.39-3.1ubuntu2) ... 345s Setting up libc6-dev:amd64 (2.39-3.1ubuntu2) ... 345s Processing triggers for man-db (2.12.1-2) ... 347s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-1ubuntu7) ... 347s update-initramfs: deferring update (trigger activated) 347s Processing triggers for install-info (7.1-3build2) ... 347s Processing triggers for initramfs-tools (0.142ubuntu28) ... 347s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 347s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 359s Reading package lists... 360s Building dependency tree... 360s Reading state information... 360s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 360s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 360s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 360s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 360s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 362s Reading package lists... 362s Reading package lists... 362s Building dependency tree... 362s Reading state information... 363s Calculating upgrade... 364s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 364s Reading package lists... 364s Building dependency tree... 364s Reading state information... 365s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 365s autopkgtest [23:33:23]: rebooting testbed after setup commands that affected boot 368s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 389s Reading package lists... 389s Building dependency tree... 389s Reading state information... 389s Starting pkgProblemResolver with broken count: 0 390s Starting 2 pkgProblemResolver with broken count: 0 390s Done 390s The following additional packages will be installed: 390s blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 libgraphite2-3 390s libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-hl-100t64 390s libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblapacke liblbfgsb0 390s liblcms2-2 liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 libssu0 libssw0 390s libsz2 libtcl8.6 libtk8.6 libtmglib3 libwebpdemux2 libwebpmux3 libxft2 390s libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 390s python3-appdirs python3-asttokens python3-biom-format python3-brotli 390s python3-click python3-colorama python3-contourpy python3-cycler 390s python3-dateutil python3-decorator python3-executing python3-fonttools 390s python3-fs python3-h5py python3-h5py-serial python3-hdmedians python3-iow 390s python3-ipython python3-jedi python3-kiwisolver python3-lxml python3-lz4 390s python3-matplotlib python3-matplotlib-inline python3-mpmath python3-natsort 390s python3-numpy python3-packaging python3-pandas python3-pandas-lib 390s python3-parso python3-pexpect python3-pil python3-pil.imagetk 390s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-scipy 390s python3-skbio python3-stack-data python3-sympy python3-tk python3-traitlets 390s python3-typeshed python3-ufolib2 python3-unifrac python3-wcwidth 390s tk8.6-blt2.5 unicode-data x11-common 390s Suggested packages: 390s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 390s python-biom-format-doc python-cycler-doc python-h5py-doc python-ipython-doc 390s python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript 390s gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi 390s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 390s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 390s python-natsort-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 390s python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc 390s python-scipy-doc python-skbio-doc texlive-fonts-extra python-sympy-doc tix 390s python3-tk-dbg 390s Recommended packages: 390s javascript-common python3-bs4 python3-cssselect python3-html5lib 390s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 390s python3-tables python3-numba python3-olefile g++ | c++-compiler 390s isympy-common 390s The following NEW packages will be installed: 390s autopkgtest-satdep blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 390s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 390s libhdf5-hl-100t64 libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 390s liblapacke liblbfgsb0 liblcms2-2 liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 390s libssu0 libssw0 libsz2 libtcl8.6 libtk8.6 libtmglib3 libwebpdemux2 390s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 390s python3-all python3-appdirs python3-asttokens python3-biom-format 390s python3-brotli python3-click python3-colorama python3-contourpy 390s python3-cycler python3-dateutil python3-decorator python3-executing 390s python3-fonttools python3-fs python3-h5py python3-h5py-serial 390s python3-hdmedians python3-iow python3-ipython python3-jedi 390s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 390s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 390s python3-packaging python3-pandas python3-pandas-lib python3-parso 390s python3-pexpect python3-pil python3-pil.imagetk python3-prompt-toolkit 390s python3-ptyprocess python3-pure-eval python3-scipy python3-skbio 390s python3-stack-data python3-sympy python3-tk python3-traitlets 390s python3-typeshed python3-ufolib2 python3-unifrac python3-wcwidth 390s tk8.6-blt2.5 unicode-data x11-common 390s 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded. 390s Need to get 71.3 MB/71.3 MB of archives. 390s After this operation, 325 MB of additional disk space will be used. 390s Get:1 /tmp/autopkgtest.AtkIqq/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [716 B] 390s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 390s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 390s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 390s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 390s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 390s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 390s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 390s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 390s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.0-1 [171 kB] 390s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 390s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 390s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 390s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 390s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 390s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 390s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 390s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 390s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [128 kB] 390s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 390s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 390s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 390s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 390s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 391s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libtmglib3 amd64 3.12.0-3build1 [141 kB] 391s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapacke amd64 3.12.0-3build1 [412 kB] 391s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 391s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 391s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 391s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 391s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 391s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libssu0 amd64 1.4-3build2 [163 kB] 391s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libssw0 amd64 1.1-14build1 [22.1 kB] 391s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 391s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 391s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 391s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 391s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 391s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 391s Get:40 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-asttokens all 2.4.1-1 [20.9 kB] 391s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 391s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB] 391s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 391s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 391s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB] 391s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 391s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB] 391s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 391s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 391s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 391s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-biom-format amd64 2.1.16-1 [141 kB] 391s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 391s Get:53 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 391s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 391s Get:55 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-executing all 2.0.1-0.1 [23.3 kB] 391s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 391s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 391s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 391s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 391s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 391s Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 391s Get:62 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 391s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 391s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-hdmedians amd64 0.14.2-5.1build1 [124 kB] 391s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-parso all 0.8.3-1 [67.2 kB] 391s Get:66 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 391s Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-jedi all 0.19.1+ds1-1 [693 kB] 391s Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-traitlets all 5.5.0-2 [85.0 kB] 391s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 391s Get:70 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-ptyprocess all 0.7.0-5 [15.1 kB] 391s Get:71 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pexpect all 4.9-2 [48.1 kB] 391s Get:72 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB] 391s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-prompt-toolkit all 3.0.47-1 [256 kB] 391s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pure-eval all 0.2.2-2 [11.1 kB] 391s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-stack-data all 0.6.3-1 [22.0 kB] 391s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ipython all 8.20.0-1ubuntu1 [561 kB] 391s Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 391s Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB] 391s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 391s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B] 391s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 391s Get:82 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 391s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB] 391s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB] 391s Get:85 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skbio amd64 0.5.9-4build1 [750 kB] 391s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iow amd64 1.0.6-5 [387 kB] 391s Get:87 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unifrac amd64 1.3-2build1 [153 kB] 392s Fetched 71.3 MB in 1s (100.0 MB/s) 392s Selecting previously unselected package libtcl8.6:amd64. 392s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74420 files and directories currently installed.) 392s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 392s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 392s Selecting previously unselected package libxrender1:amd64. 392s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 392s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 392s Selecting previously unselected package libxft2:amd64. 392s Preparing to unpack .../02-libxft2_2.3.6-1build1_amd64.deb ... 392s Unpacking libxft2:amd64 (2.3.6-1build1) ... 392s Selecting previously unselected package x11-common. 392s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 392s Unpacking x11-common (1:7.7+23ubuntu3) ... 392s Selecting previously unselected package libxss1:amd64. 392s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_amd64.deb ... 392s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 392s Selecting previously unselected package libtk8.6:amd64. 392s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_amd64.deb ... 392s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 392s Selecting previously unselected package tk8.6-blt2.5. 392s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 392s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 392s Selecting previously unselected package blt. 392s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_amd64.deb ... 392s Unpacking blt (2.5.3+dfsg-7build1) ... 392s Selecting previously unselected package fonts-lyx. 392s Preparing to unpack .../08-fonts-lyx_2.4.0-1_all.deb ... 392s Unpacking fonts-lyx (2.4.0-1) ... 392s Selecting previously unselected package libaec0:amd64. 392s Preparing to unpack .../09-libaec0_1.1.3-1_amd64.deb ... 392s Unpacking libaec0:amd64 (1.1.3-1) ... 392s Selecting previously unselected package libblas3:amd64. 393s Preparing to unpack .../10-libblas3_3.12.0-3build1_amd64.deb ... 393s Unpacking libblas3:amd64 (3.12.0-3build1) ... 393s Selecting previously unselected package libgfortran5:amd64. 393s Preparing to unpack .../11-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 393s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 393s Selecting previously unselected package libgomp1:amd64. 393s Preparing to unpack .../12-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 393s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 393s Selecting previously unselected package libgraphite2-3:amd64. 393s Preparing to unpack .../13-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 393s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 393s Selecting previously unselected package libharfbuzz0b:amd64. 393s Preparing to unpack .../14-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 393s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 393s Selecting previously unselected package libsz2:amd64. 393s Preparing to unpack .../15-libsz2_1.1.3-1_amd64.deb ... 393s Unpacking libsz2:amd64 (1.1.3-1) ... 393s Selecting previously unselected package libhdf5-103-1t64:amd64. 393s Preparing to unpack .../16-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 393s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 393s Selecting previously unselected package libhdf5-cpp-103-1t64:amd64. 393s Preparing to unpack .../17-libhdf5-cpp-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 393s Unpacking libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 393s Selecting previously unselected package libhdf5-hl-100t64:amd64. 393s Preparing to unpack .../18-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 393s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 393s Selecting previously unselected package libimagequant0:amd64. 393s Preparing to unpack .../19-libimagequant0_2.18.0-1build1_amd64.deb ... 393s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 393s Selecting previously unselected package libjs-jquery. 393s Preparing to unpack .../20-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 393s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 393s Selecting previously unselected package libjs-jquery-ui. 393s Preparing to unpack .../21-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 393s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 393s Selecting previously unselected package liblapack3:amd64. 393s Preparing to unpack .../22-liblapack3_3.12.0-3build1_amd64.deb ... 393s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 393s Selecting previously unselected package libtmglib3:amd64. 393s Preparing to unpack .../23-libtmglib3_3.12.0-3build1_amd64.deb ... 393s Unpacking libtmglib3:amd64 (3.12.0-3build1) ... 393s Selecting previously unselected package liblapacke:amd64. 393s Preparing to unpack .../24-liblapacke_3.12.0-3build1_amd64.deb ... 393s Unpacking liblapacke:amd64 (3.12.0-3build1) ... 393s Selecting previously unselected package liblbfgsb0:amd64. 393s Preparing to unpack .../25-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 393s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 393s Selecting previously unselected package liblcms2-2:amd64. 393s Preparing to unpack .../26-liblcms2-2_2.14-2build1_amd64.deb ... 393s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 393s Selecting previously unselected package liblzf1:amd64. 393s Preparing to unpack .../27-liblzf1_3.6-4_amd64.deb ... 393s Unpacking liblzf1:amd64 (3.6-4) ... 393s Selecting previously unselected package libqhull-r8.0:amd64. 393s Preparing to unpack .../28-libqhull-r8.0_2020.2-6build1_amd64.deb ... 393s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 393s Selecting previously unselected package libraqm0:amd64. 393s Preparing to unpack .../29-libraqm0_0.10.1-1build1_amd64.deb ... 393s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 393s Selecting previously unselected package libssu0:amd64. 393s Preparing to unpack .../30-libssu0_1.4-3build2_amd64.deb ... 393s Unpacking libssu0:amd64 (1.4-3build2) ... 393s Selecting previously unselected package libssw0:amd64. 394s Preparing to unpack .../31-libssw0_1.1-14build1_amd64.deb ... 394s Unpacking libssw0:amd64 (1.1-14build1) ... 394s Selecting previously unselected package libwebpdemux2:amd64. 394s Preparing to unpack .../32-libwebpdemux2_1.4.0-0.1_amd64.deb ... 394s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 394s Selecting previously unselected package libwebpmux3:amd64. 394s Preparing to unpack .../33-libwebpmux3_1.4.0-0.1_amd64.deb ... 394s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 394s Selecting previously unselected package libxslt1.1:amd64. 394s Preparing to unpack .../34-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 394s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 394s Selecting previously unselected package python-matplotlib-data. 394s Preparing to unpack .../35-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 394s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 394s Selecting previously unselected package python3-all. 394s Preparing to unpack .../36-python3-all_3.12.3-0ubuntu1_amd64.deb ... 394s Unpacking python3-all (3.12.3-0ubuntu1) ... 394s Selecting previously unselected package python3-appdirs. 394s Preparing to unpack .../37-python3-appdirs_1.4.4-4_all.deb ... 394s Unpacking python3-appdirs (1.4.4-4) ... 394s Selecting previously unselected package python3-asttokens. 394s Preparing to unpack .../38-python3-asttokens_2.4.1-1_all.deb ... 394s Unpacking python3-asttokens (2.4.1-1) ... 394s Selecting previously unselected package python3-numpy. 394s Preparing to unpack .../39-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 394s Unpacking python3-numpy (1:1.26.4+ds-10) ... 394s Selecting previously unselected package python3-h5py-serial. 394s Preparing to unpack .../40-python3-h5py-serial_3.10.0-1ubuntu3_amd64.deb ... 394s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 394s Selecting previously unselected package python3-h5py. 394s Preparing to unpack .../41-python3-h5py_3.10.0-1ubuntu3_all.deb ... 394s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 394s Selecting previously unselected package python3-colorama. 394s Preparing to unpack .../42-python3-colorama_0.4.6-4_all.deb ... 394s Unpacking python3-colorama (0.4.6-4) ... 394s Selecting previously unselected package python3-click. 394s Preparing to unpack .../43-python3-click_8.1.7-1_all.deb ... 394s Unpacking python3-click (8.1.7-1) ... 394s Selecting previously unselected package python3-dateutil. 394s Preparing to unpack .../44-python3-dateutil_2.9.0-2_all.deb ... 394s Unpacking python3-dateutil (2.9.0-2) ... 394s Selecting previously unselected package python3-pandas-lib:amd64. 394s Preparing to unpack .../45-python3-pandas-lib_2.1.4+dfsg-8_amd64.deb ... 394s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 395s Selecting previously unselected package python3-pandas. 395s Preparing to unpack .../46-python3-pandas_2.1.4+dfsg-8_all.deb ... 395s Unpacking python3-pandas (2.1.4+dfsg-8) ... 395s Selecting previously unselected package python3-decorator. 395s Preparing to unpack .../47-python3-decorator_5.1.1-5_all.deb ... 395s Unpacking python3-decorator (5.1.1-5) ... 395s Selecting previously unselected package python3-scipy. 395s Preparing to unpack .../48-python3-scipy_1.12.0-2_amd64.deb ... 395s Unpacking python3-scipy (1.12.0-2) ... 396s Selecting previously unselected package python3-biom-format. 396s Preparing to unpack .../49-python3-biom-format_2.1.16-1_amd64.deb ... 396s Unpacking python3-biom-format (2.1.16-1) ... 396s Selecting previously unselected package python3-brotli. 396s Preparing to unpack .../50-python3-brotli_1.1.0-2build2_amd64.deb ... 396s Unpacking python3-brotli (1.1.0-2build2) ... 396s Selecting previously unselected package python3-contourpy. 396s Preparing to unpack .../51-python3-contourpy_1.0.7-3_amd64.deb ... 396s Unpacking python3-contourpy (1.0.7-3) ... 396s Selecting previously unselected package python3-cycler. 396s Preparing to unpack .../52-python3-cycler_0.12.1-1_all.deb ... 396s Unpacking python3-cycler (0.12.1-1) ... 396s Selecting previously unselected package python3-executing. 396s Preparing to unpack .../53-python3-executing_2.0.1-0.1_all.deb ... 396s Unpacking python3-executing (2.0.1-0.1) ... 396s Selecting previously unselected package python3-ufolib2. 396s Preparing to unpack .../54-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 396s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 396s Selecting previously unselected package python3-mpmath. 396s Preparing to unpack .../55-python3-mpmath_1.3.0-1_all.deb ... 396s Unpacking python3-mpmath (1.3.0-1) ... 396s Selecting previously unselected package python3-sympy. 396s Preparing to unpack .../56-python3-sympy_1.12-8_all.deb ... 396s Unpacking python3-sympy (1.12-8) ... 396s Selecting previously unselected package python3-fs. 396s Preparing to unpack .../57-python3-fs_2.4.16-4_all.deb ... 396s Unpacking python3-fs (2.4.16-4) ... 396s Selecting previously unselected package python3-lxml:amd64. 396s Preparing to unpack .../58-python3-lxml_5.2.1-1_amd64.deb ... 396s Unpacking python3-lxml:amd64 (5.2.1-1) ... 396s Selecting previously unselected package python3-lz4. 396s Preparing to unpack .../59-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 396s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 397s Selecting previously unselected package unicode-data. 397s Preparing to unpack .../60-unicode-data_15.1.0-1_all.deb ... 397s Unpacking unicode-data (15.1.0-1) ... 397s Selecting previously unselected package python3-fonttools. 397s Preparing to unpack .../61-python3-fonttools_4.46.0-1build2_amd64.deb ... 397s Unpacking python3-fonttools (4.46.0-1build2) ... 397s Selecting previously unselected package python3-hdmedians. 397s Preparing to unpack .../62-python3-hdmedians_0.14.2-5.1build1_amd64.deb ... 397s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 397s Selecting previously unselected package python3-parso. 397s Preparing to unpack .../63-python3-parso_0.8.3-1_all.deb ... 397s Unpacking python3-parso (0.8.3-1) ... 397s Selecting previously unselected package python3-typeshed. 397s Preparing to unpack .../64-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 397s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 398s Selecting previously unselected package python3-jedi. 398s Preparing to unpack .../65-python3-jedi_0.19.1+ds1-1_all.deb ... 398s Unpacking python3-jedi (0.19.1+ds1-1) ... 398s Selecting previously unselected package python3-traitlets. 398s Preparing to unpack .../66-python3-traitlets_5.5.0-2_all.deb ... 398s Unpacking python3-traitlets (5.5.0-2) ... 398s Selecting previously unselected package python3-matplotlib-inline. 398s Preparing to unpack .../67-python3-matplotlib-inline_0.1.6-2_all.deb ... 398s Unpacking python3-matplotlib-inline (0.1.6-2) ... 398s Selecting previously unselected package python3-ptyprocess. 398s Preparing to unpack .../68-python3-ptyprocess_0.7.0-5_all.deb ... 398s Unpacking python3-ptyprocess (0.7.0-5) ... 398s Selecting previously unselected package python3-pexpect. 398s Preparing to unpack .../69-python3-pexpect_4.9-2_all.deb ... 398s Unpacking python3-pexpect (4.9-2) ... 398s Selecting previously unselected package python3-wcwidth. 398s Preparing to unpack .../70-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ... 398s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 398s Selecting previously unselected package python3-prompt-toolkit. 398s Preparing to unpack .../71-python3-prompt-toolkit_3.0.47-1_all.deb ... 398s Unpacking python3-prompt-toolkit (3.0.47-1) ... 399s Selecting previously unselected package python3-pure-eval. 399s Preparing to unpack .../72-python3-pure-eval_0.2.2-2_all.deb ... 399s Unpacking python3-pure-eval (0.2.2-2) ... 399s Selecting previously unselected package python3-stack-data. 399s Preparing to unpack .../73-python3-stack-data_0.6.3-1_all.deb ... 399s Unpacking python3-stack-data (0.6.3-1) ... 399s Selecting previously unselected package python3-ipython. 399s Preparing to unpack .../74-python3-ipython_8.20.0-1ubuntu1_all.deb ... 399s Unpacking python3-ipython (8.20.0-1ubuntu1) ... 399s Selecting previously unselected package libopenjp2-7:amd64. 399s Preparing to unpack .../75-libopenjp2-7_2.5.0-2build3_amd64.deb ... 399s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 399s Selecting previously unselected package python3-pil:amd64. 399s Preparing to unpack .../76-python3-pil_10.3.0-2_amd64.deb ... 399s Unpacking python3-pil:amd64 (10.3.0-2) ... 399s Selecting previously unselected package python3-tk:amd64. 399s Preparing to unpack .../77-python3-tk_3.12.3-0ubuntu1_amd64.deb ... 399s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ... 399s Selecting previously unselected package python3-pil.imagetk:amd64. 399s Preparing to unpack .../78-python3-pil.imagetk_10.3.0-2_amd64.deb ... 399s Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ... 399s Selecting previously unselected package python3-kiwisolver. 399s Preparing to unpack .../79-python3-kiwisolver_1.4.5-1_amd64.deb ... 399s Unpacking python3-kiwisolver (1.4.5-1) ... 399s Selecting previously unselected package python3-packaging. 399s Preparing to unpack .../80-python3-packaging_24.0-1_all.deb ... 399s Unpacking python3-packaging (24.0-1) ... 399s Selecting previously unselected package python3-matplotlib. 399s Preparing to unpack .../81-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ... 399s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 399s Selecting previously unselected package python3-natsort. 399s Preparing to unpack .../82-python3-natsort_8.0.2-2_all.deb ... 399s Unpacking python3-natsort (8.0.2-2) ... 399s Selecting previously unselected package python3-skbio. 399s Preparing to unpack .../83-python3-skbio_0.5.9-4build1_amd64.deb ... 399s Unpacking python3-skbio (0.5.9-4build1) ... 399s Selecting previously unselected package python3-iow. 399s Preparing to unpack .../84-python3-iow_1.0.6-5_amd64.deb ... 399s Unpacking python3-iow (1.0.6-5) ... 399s Selecting previously unselected package python3-unifrac. 399s Preparing to unpack .../85-python3-unifrac_1.3-2build1_amd64.deb ... 399s Unpacking python3-unifrac (1.3-2build1) ... 399s Selecting previously unselected package autopkgtest-satdep. 399s Preparing to unpack .../86-2-autopkgtest-satdep.deb ... 399s Unpacking autopkgtest-satdep (0) ... 400s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 400s Setting up liblcms2-2:amd64 (2.14-2build1) ... 400s Setting up python3-pure-eval (0.2.2-2) ... 400s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 400s Setting up python3-parso (0.8.3-1) ... 400s Setting up python3-colorama (0.4.6-4) ... 400s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 400s Setting up python3-asttokens (2.4.1-1) ... 400s Setting up fonts-lyx (2.4.0-1) ... 400s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 400s Setting up x11-common (1:7.7+23ubuntu3) ... 401s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 401s Setting up python3-all (3.12.3-0ubuntu1) ... 401s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 401s Setting up python3-click (8.1.7-1) ... 401s Setting up libaec0:amd64 (1.1.3-1) ... 401s Setting up python3-natsort (8.0.2-2) ... 401s Setting up unicode-data (15.1.0-1) ... 401s Setting up python3-decorator (5.1.1-5) ... 402s Setting up libblas3:amd64 (3.12.0-3build1) ... 402s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 402s Setting up python3-packaging (24.0-1) ... 402s Setting up python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 402s Setting up python3-typeshed (0.0~git20231111.6764465-3) ... 402s Setting up python3-executing (2.0.1-0.1) ... 402s Setting up python3-brotli (1.1.0-2build2) ... 402s Setting up liblzf1:amd64 (3.6-4) ... 402s Setting up python3-cycler (0.12.1-1) ... 403s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 403s Setting up python3-kiwisolver (1.4.5-1) ... 403s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 403s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 403s Setting up python3-traitlets (5.5.0-2) ... 403s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 403s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 403s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... 403s Setting up python3-dateutil (2.9.0-2) ... 403s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 403s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 403s Setting up python3-mpmath (1.3.0-1) ... 404s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 404s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 404s Setting up python3-appdirs (1.4.4-4) ... 404s Setting up python3-stack-data (0.6.3-1) ... 404s Setting up libssw0:amd64 (1.1-14build1) ... 404s Setting up libsz2:amd64 (1.1.3-1) ... 404s Setting up python3-ptyprocess (0.7.0-5) ... 405s Setting up python3-prompt-toolkit (3.0.47-1) ... 405s Setting up python3-sympy (1.12-8) ... 413s Setting up liblapack3:amd64 (3.12.0-3build1) ... 413s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 413s Setting up libxft2:amd64 (2.3.6-1build1) ... 413s Setting up python3-jedi (0.19.1+ds1-1) ... 413s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 413s Setting up python3-matplotlib-inline (0.1.6-2) ... 413s Setting up python3-fs (2.4.16-4) ... 414s Setting up libtmglib3:amd64 (3.12.0-3build1) ... 414s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 414s Setting up python3-pexpect (4.9-2) ... 414s Setting up libraqm0:amd64 (0.10.1-1build1) ... 414s Setting up python3-numpy (1:1.26.4+ds-10) ... 416s Setting up python3-hdmedians (0.14.2-5.1build1) ... 416s Setting up python3-lxml:amd64 (5.2.1-1) ... 417s Setting up liblapacke:amd64 (3.12.0-3build1) ... 417s Setting up python3-contourpy (1.0.7-3) ... 417s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 417s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 417s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 417s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 417s Setting up python3-scipy (1.12.0-2) ... 421s Setting up blt (2.5.3+dfsg-7build1) ... 421s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 421s Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 421s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 421s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ... 422s Setting up python3-pil:amd64 (10.3.0-2) ... 422s Setting up python3-pandas (2.1.4+dfsg-8) ... 428s Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... 428s Setting up python3-ipython (8.20.0-1ubuntu1) ... 429s Setting up python3-h5py (3.10.0-1ubuntu3) ... 429s Setting up libssu0:amd64 (1.4-3build2) ... 429s Setting up python3-biom-format (2.1.16-1) ... 429s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 430s Setting up python3-fonttools (4.46.0-1build2) ... 430s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 432s Setting up python3-skbio (0.5.9-4build1) ... 433s Setting up python3-iow (1.0.6-5) ... 433s Setting up python3-unifrac (1.3-2build1) ... 433s Setting up autopkgtest-satdep (0) ... 433s Processing triggers for libc-bin (2.39-3.1ubuntu2) ... 433s Processing triggers for man-db (2.12.1-2) ... 440s (Reading database ... 91398 files and directories currently installed.) 440s Removing autopkgtest-satdep (0) ... 441s autopkgtest [23:34:39]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import unifrac; print(unifrac)" ; done 441s autopkgtest [23:34:39]: test autodep8-python3: [----------------------- 441s Testing with python3.12: 443s 443s autopkgtest [23:34:41]: test autodep8-python3: -----------------------] 444s autopkgtest [23:34:42]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 444s autodep8-python3 PASS (superficial) 444s autopkgtest [23:34:42]: @@@@@@@@@@@@@@@@@@@@ summary 444s run-unit-test PASS 444s autodep8-python3 PASS (superficial) 461s nova [W] Skipping flock for amd64 461s Creating nova instance adt-oracular-amd64-unifrac-20240628-232718-juju-7f2275-prod-proposed-migration-environment-3-b5eb3924-531c-4d11-851a-7163e68c1db8 from image adt/ubuntu-oracular-amd64-server-20240628.img (UUID 9d02b460-22c0-49a4-a380-3bb68f865fe5)... 461s nova [W] Skipping flock for amd64 461s Creating nova instance adt-oracular-amd64-unifrac-20240628-232718-juju-7f2275-prod-proposed-migration-environment-3-b5eb3924-531c-4d11-851a-7163e68c1db8 from image adt/ubuntu-oracular-amd64-server-20240628.img (UUID 9d02b460-22c0-49a4-a380-3bb68f865fe5)...