8s autopkgtest [19:39:01]: starting date and time: 2024-07-12 19:39:01+0000
  9s autopkgtest [19:39:02]: git checkout: fd3bed09 nova: allow more retries for quota issues
  9s autopkgtest [19:39:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rfqcdzxl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade suitesparse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-64.secgroup --name adt-oracular-amd64-suitesparse-20240712-193830-juju-7f2275-prod-proposed-migration-environment-2-66dbb14b-adcb-4ac0-8d8c-52f98c4ddd48 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
160s autopkgtest [19:41:33]: testbed dpkg architecture: amd64
160s autopkgtest [19:41:33]: testbed apt version: 2.9.6
160s autopkgtest [19:41:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup
162s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
162s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
162s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [371 kB]
162s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [48.0 kB]
162s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3288 B]
162s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [99.8 kB]
162s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [71.2 kB]
162s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2104 B]
162s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB]
162s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B]
162s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B]
162s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [236 kB]
162s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [393 kB]
162s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9228 B]
162s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B]
162s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7976 B]
162s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B]
163s Fetched 1422 kB in 0s (4501 kB/s)
164s Reading package lists...
170s Reading package lists...
170s Building dependency tree...
170s Reading state information...
171s Calculating upgrade...
171s The following packages will be upgraded:
171s   libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales
171s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
171s Need to get 10.3 MB of archives.
171s After this operation, 34.8 kB of additional disk space will be used.
171s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-devtools amd64 2.39-3.1ubuntu3 [29.3 kB]
171s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6-dev amd64 2.39-3.1ubuntu3 [2120 kB]
171s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-dev-bin amd64 2.39-3.1ubuntu3 [20.4 kB]
171s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6 amd64 2.39-3.1ubuntu3 [3262 kB]
171s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-bin amd64 2.39-3.1ubuntu3 [680 kB]
171s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 locales all 2.39-3.1ubuntu3 [4220 kB]
172s Preconfiguring packages ...
172s Fetched 10.3 MB in 0s (70.8 MB/s)
172s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74486 files and directories currently installed.)
172s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_amd64.deb ...
172s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
172s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_amd64.deb ...
172s Unpacking libc6-dev:amd64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
172s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_amd64.deb ...
172s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
172s Preparing to unpack .../libc6_2.39-3.1ubuntu3_amd64.deb ...
173s Unpacking libc6:amd64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
173s Setting up libc6:amd64 (2.39-3.1ubuntu3) ...
173s Error: Could not restart systemd, systemd binary not working
173s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74486 files and directories currently installed.)
173s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_amd64.deb ...
173s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
173s Setting up libc-bin (2.39-3.1ubuntu3) ...
173s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74486 files and directories currently installed.)
173s Preparing to unpack .../locales_2.39-3.1ubuntu3_all.deb ...
173s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
174s Setting up locales (2.39-3.1ubuntu3) ...
174s Generating locales (this might take a while)...
176s   en_US.UTF-8... done
176s Generation complete.
176s Setting up libc-dev-bin (2.39-3.1ubuntu3) ...
176s Setting up libc-devtools (2.39-3.1ubuntu3) ...
176s Setting up libc6-dev:amd64 (2.39-3.1ubuntu3) ...
176s Processing triggers for man-db (2.12.1-2) ...
177s Processing triggers for systemd (256-1ubuntu1) ...
178s Reading package lists...
179s Building dependency tree...
179s Reading state information...
179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
179s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
179s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
179s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
179s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
181s Reading package lists...
181s Reading package lists...
181s Building dependency tree...
181s Reading state information...
181s Calculating upgrade...
182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
182s Reading package lists...
182s Building dependency tree...
182s Reading state information...
183s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
192s autopkgtest [19:42:05]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024
192s autopkgtest [19:42:05]: @@@@@@@@@@@@@@@@@@@@ apt-source suitesparse
420s Get:1 http://ftpmaster.internal/ubuntu oracular/main suitesparse 1:7.7.0+dfsg-3 (dsc) [3407 B]
420s Get:2 http://ftpmaster.internal/ubuntu oracular/main suitesparse 1:7.7.0+dfsg-3 (tar) [50.8 MB]
420s Get:3 http://ftpmaster.internal/ubuntu oracular/main suitesparse 1:7.7.0+dfsg-3 (diff) [27.9 kB]
421s gpgv: Signature made Fri Jul  5 15:02:41 2024 UTC
421s gpgv:                using RSA key 53951D95272E0C5B82BE8C4A2CECE9350ECEBE4A
421s gpgv: Can't check signature: No public key
421s dpkg-source: warning: cannot verify inline signature for ./suitesparse_7.7.0+dfsg-3.dsc: no acceptable signature found
425s autopkgtest [19:45:58]: testing package suitesparse version 1:7.7.0+dfsg-3
436s autopkgtest [19:46:09]: build not needed
447s autopkgtest [19:46:20]: test command1: preparing testbed
454s Reading package lists...
454s Building dependency tree...
454s Reading state information...
454s Starting pkgProblemResolver with broken count: 0
454s Starting 2 pkgProblemResolver with broken count: 0
454s Done
455s The following additional packages will be installed:
455s   libamd3 libblas3 libcolamd3 libgfortran5 libgomp1 liblapack3 liblbfgsb0
455s   libspex3 libsuitesparseconfig7 python3-decorator python3-numpy python3-scipy
455s   python3-spexpy
455s Suggested packages:
455s   gcc gfortran python-numpy-doc python3-dev python3-pytest python-scipy-doc
455s Recommended packages:
455s   g++ | c++-compiler python3-pil
455s The following NEW packages will be installed:
455s   autopkgtest-satdep libamd3 libblas3 libcolamd3 libgfortran5 libgomp1
455s   liblapack3 liblbfgsb0 libspex3 libsuitesparseconfig7 python3-decorator
455s   python3-numpy python3-scipy python3-spexpy
455s 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded.
455s Need to get 25.0 MB/25.0 MB of archives.
455s After this operation, 103 MB of additional disk space will be used.
455s Get:1 /tmp/autopkgtest.UUTzeK/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [712 B]
455s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB]
455s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libsuitesparseconfig7 amd64 1:7.7.0+dfsg-3 [12.9 kB]
455s Get:4 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamd3 amd64 1:7.7.0+dfsg-3 [27.2 kB]
455s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB]
455s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libcolamd3 amd64 1:7.7.0+dfsg-3 [19.4 kB]
455s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB]
455s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB]
455s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
455s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 libspex3 amd64 1:7.7.0+dfsg-3 [46.1 kB]
455s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
455s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB]
455s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB]
455s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-spexpy all 1:7.7.0+dfsg-3 [9272 B]
456s Fetched 25.0 MB in 0s (57.3 MB/s)
456s Selecting previously unselected package libgomp1:amd64.
456s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74486 files and directories currently installed.)
456s Preparing to unpack .../00-libgomp1_14.1.0-1ubuntu1_amd64.deb ...
456s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ...
456s Selecting previously unselected package libsuitesparseconfig7:amd64.
456s Preparing to unpack .../01-libsuitesparseconfig7_1%3a7.7.0+dfsg-3_amd64.deb ...
456s Unpacking libsuitesparseconfig7:amd64 (1:7.7.0+dfsg-3) ...
456s Selecting previously unselected package libamd3:amd64.
456s Preparing to unpack .../02-libamd3_1%3a7.7.0+dfsg-3_amd64.deb ...
456s Unpacking libamd3:amd64 (1:7.7.0+dfsg-3) ...
456s Selecting previously unselected package libblas3:amd64.
456s Preparing to unpack .../03-libblas3_3.12.0-3build1_amd64.deb ...
456s Unpacking libblas3:amd64 (3.12.0-3build1) ...
456s Selecting previously unselected package libcolamd3:amd64.
456s Preparing to unpack .../04-libcolamd3_1%3a7.7.0+dfsg-3_amd64.deb ...
456s Unpacking libcolamd3:amd64 (1:7.7.0+dfsg-3) ...
456s Selecting previously unselected package libgfortran5:amd64.
456s Preparing to unpack .../05-libgfortran5_14.1.0-1ubuntu1_amd64.deb ...
456s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ...
456s Selecting previously unselected package liblapack3:amd64.
456s Preparing to unpack .../06-liblapack3_3.12.0-3build1_amd64.deb ...
456s Unpacking liblapack3:amd64 (3.12.0-3build1) ...
456s Selecting previously unselected package liblbfgsb0:amd64.
456s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ...
456s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
456s Selecting previously unselected package libspex3:amd64.
456s Preparing to unpack .../08-libspex3_1%3a7.7.0+dfsg-3_amd64.deb ...
456s Unpacking libspex3:amd64 (1:7.7.0+dfsg-3) ...
456s Selecting previously unselected package python3-decorator.
456s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ...
456s Unpacking python3-decorator (5.1.1-5) ...
456s Selecting previously unselected package python3-numpy.
456s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ...
456s Unpacking python3-numpy (1:1.26.4+ds-10) ...
457s Selecting previously unselected package python3-scipy.
457s Preparing to unpack .../11-python3-scipy_1.12.0-2_amd64.deb ...
457s Unpacking python3-scipy (1.12.0-2) ...
457s Selecting previously unselected package python3-spexpy.
457s Preparing to unpack .../12-python3-spexpy_1%3a7.7.0+dfsg-3_all.deb ...
457s Unpacking python3-spexpy (1:7.7.0+dfsg-3) ...
457s Selecting previously unselected package autopkgtest-satdep.
457s Preparing to unpack .../13-1-autopkgtest-satdep.deb ...
457s Unpacking autopkgtest-satdep (0) ...
457s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ...
457s Setting up python3-decorator (5.1.1-5) ...
457s Setting up libblas3:amd64 (3.12.0-3build1) ...
457s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
457s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ...
457s Setting up libsuitesparseconfig7:amd64 (1:7.7.0+dfsg-3) ...
457s Setting up liblapack3:amd64 (3.12.0-3build1) ...
457s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
457s Setting up libamd3:amd64 (1:7.7.0+dfsg-3) ...
457s Setting up libcolamd3:amd64 (1:7.7.0+dfsg-3) ...
457s Setting up libspex3:amd64 (1:7.7.0+dfsg-3) ...
457s Setting up python3-numpy (1:1.26.4+ds-10) ...
460s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
460s Setting up python3-scipy (1.12.0-2) ...
464s Setting up python3-spexpy (1:7.7.0+dfsg-3) ...
464s Setting up autopkgtest-satdep (0) ...
464s Processing triggers for man-db (2.12.1-2) ...
464s Processing triggers for libc-bin (2.39-3.1ubuntu3) ...
486s (Reading database ... 76855 files and directories currently installed.)
486s Removing autopkgtest-satdep (0) ...
498s autopkgtest [19:47:11]: test command1: python3 SPEX/Python/spex_python_demo.py
498s autopkgtest [19:47:11]: test command1: [-----------------------
499s [ 37.91666667 -10.33333333   1.66666667]
499s [b'-152194397290560/2471179667319917' b'34675988609624/2471179667319917'
499s  b'55964260613375/2471179667319917' b'-8941180920763/2471179667319917'
499s  b'54873073550198/2471179667319917' b'-50740803029227/2471179667319917'
499s  b'109859101228650/2471179667319917' b'30699658860737/2471179667319917'
499s  b'-9218746620516/2471179667319917' b'37644330876943/2471179667319917']
499s [-0.06158775  0.01403216  0.02264678 -0.00361818  0.02220521 -0.02053303
499s   0.04445614  0.01242308 -0.0037305   0.01523334]
500s autopkgtest [19:47:13]: test command1: -----------------------]
503s autopkgtest [19:47:16]: test command1:  - - - - - - - - - - results - - - - - - - - - -
503s command1             PASS (superficial)
503s autopkgtest [19:47:16]: @@@@@@@@@@@@@@@@@@@@ summary
503s command1             PASS (superficial)
545s nova [W] Skipping flock for amd64
545s Creating nova instance adt-oracular-amd64-suitesparse-20240712-193830-juju-7f2275-prod-proposed-migration-environment-2-66dbb14b-adcb-4ac0-8d8c-52f98c4ddd48 from image adt/ubuntu-oracular-amd64-server-20240712.img (UUID 9132249a-6053-4497-bc26-981612ca03ad)...