0s autopkgtest [15:58:19]: starting date and time: 2024-07-26 15:58:19+0000 0s autopkgtest [15:58:19]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [15:58:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i6nmmch7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:googletest --apt-upgrade seqan-raptor --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=googletest/1.15.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-92.secgroup --name adt-oracular-amd64-seqan-raptor-20240726-155819-juju-7f2275-prod-proposed-migration-environment-2-555e2b95-fad6-4d3f-9875-258df942c70b --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 64s autopkgtest [15:59:23]: testbed dpkg architecture: amd64 64s autopkgtest [15:59:23]: testbed apt version: 2.9.6 64s autopkgtest [15:59:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 65s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [436 kB] 65s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B] 65s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 65s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB] 65s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [94.8 kB] 65s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [53.4 kB] 65s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 65s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 65s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 65s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 65s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [296 kB] 65s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [498 kB] 65s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 65s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [8792 B] 65s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 65s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 66s Fetched 1634 kB in 0s (4856 kB/s) 66s Reading package lists... 67s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Calculating upgrade... 68s The following packages will be upgraded: 68s bpfcc-tools bpftrace libbpfcc liblz4-1 mawk python3-bpfcc 68s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 13.9 MB of archives. 68s After this operation, 37.8 MB of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 liblz4-1 amd64 1.9.4-3 [63.1 kB] 68s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 mawk amd64 1.3.4.20240622-2 [127 kB] 68s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libbpfcc amd64 0.30.0+ds-1ubuntu2 [644 kB] 68s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bpfcc all 0.30.0+ds-1ubuntu2 [40.3 kB] 68s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 bpfcc-tools all 0.30.0+ds-1ubuntu2 [697 kB] 68s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 bpftrace amd64 0.21.0-1ubuntu6 [12.3 MB] 69s Fetched 13.9 MB in 0s (42.6 MB/s) 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 69s Preparing to unpack .../liblz4-1_1.9.4-3_amd64.deb ... 69s Unpacking liblz4-1:amd64 (1.9.4-3) over (1.9.4-2) ... 69s Setting up liblz4-1:amd64 (1.9.4-3) ... 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 69s Preparing to unpack .../mawk_1.3.4.20240622-2_amd64.deb ... 69s Unpacking mawk (1.3.4.20240622-2) over (1.3.4.20240622-1) ... 69s Preparing to unpack .../libbpfcc_0.30.0+ds-1ubuntu2_amd64.deb ... 69s Unpacking libbpfcc:amd64 (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 69s Preparing to unpack .../python3-bpfcc_0.30.0+ds-1ubuntu2_all.deb ... 69s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 69s Preparing to unpack .../bpfcc-tools_0.30.0+ds-1ubuntu2_all.deb ... 69s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 69s Preparing to unpack .../bpftrace_0.21.0-1ubuntu6_amd64.deb ... 69s Unpacking bpftrace (0.21.0-1ubuntu6) over (0.20.2-1ubuntu4) ... 70s Setting up mawk (1.3.4.20240622-2) ... 70s Setting up libbpfcc:amd64 (0.30.0+ds-1ubuntu2) ... 70s Setting up python3-bpfcc (0.30.0+ds-1ubuntu2) ... 70s Setting up bpftrace (0.21.0-1ubuntu6) ... 70s Setting up bpfcc-tools (0.30.0+ds-1ubuntu2) ... 70s Processing triggers for man-db (2.12.1-2) ... 71s Processing triggers for libc-bin (2.39-0ubuntu9) ... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 72s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 73s Reading package lists... 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 74s Calculating upgrade... 74s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s autopkgtest [15:59:35]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 76s autopkgtest [15:59:35]: @@@@@@@@@@@@@@@@@@@@ apt-source seqan-raptor 77s Get:1 http://ftpmaster.internal/ubuntu oracular/universe seqan-raptor 3.0.1+ds-5 (dsc) [2642 B] 77s Get:2 http://ftpmaster.internal/ubuntu oracular/universe seqan-raptor 3.0.1+ds-5 (tar) [3085 kB] 77s Get:3 http://ftpmaster.internal/ubuntu oracular/universe seqan-raptor 3.0.1+ds-5 (diff) [10.3 kB] 77s gpgv: Signature made Wed Sep 6 13:05:19 2023 UTC 77s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 77s gpgv: Can't check signature: No public key 77s dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_3.0.1+ds-5.dsc: no acceptable signature found 77s autopkgtest [15:59:36]: testing package seqan-raptor version 3.0.1+ds-5 77s autopkgtest [15:59:36]: build not needed 77s autopkgtest [15:59:36]: test cwl: preparing testbed 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Starting pkgProblemResolver with broken count: 0 78s Starting 2 pkgProblemResolver with broken count: 0 78s Done 79s The following additional packages will be installed: 79s cwl-upgrader cwltool fontconfig fonts-glyphicons-halflings graphviz libann0 79s libcairo2 libcares2 libcdt5 libcgraph6 libdatrie1 libgts-0.7-5t64 libgvc6 79s libgvpr2 libice6 libjs-bootstrap liblab-gamut1 libltdl7 libnode115 79s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 79s libpixman-1-0 libsm6 libthai-data libthai0 libxaw7 libxcb-render0 79s libxcb-shm0 libxmu6 libxrender1 libxslt1.1 libxt6t64 libyaml-cpp0.8 79s node-acorn node-cjs-module-lexer node-undici node-xtend nodejs python3-arcp 79s python3-argcomplete python3-cachecontrol python3-coloredlogs 79s python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly 79s python3-isodate python3-lxml python3-mistune python3-msgpack 79s python3-mypy-extensions python3-networkx python3-packaging python3-prov 79s python3-psutil python3-pydot python3-rdflib python3-ruamel.yaml 79s python3-ruamel.yaml.clib python3-schema-salad python3-shellescape 79s python3-six python3-spython seqan-raptor seqan-raptor-doc x11-common 79s Suggested packages: 79s podman | docker.io | singularity-container cwltool-doc gsfonts graphviz-doc 79s npm node-corepack cwl-utils python-lxml-doc python3-gdal python3-matplotlib 79s python3-pygraphviz python3-scipy python-prov-doc python-rdflib-doc 79s singularity-container 79s Recommended packages: 79s fonts-liberation libgts-bin nodejs-doc python3-bs4 python3-cssselect 79s python3-html5lib python3-numpy python3-sparqlwrapper black 79s The following NEW packages will be installed: 79s autopkgtest-satdep cwl-upgrader cwltool fontconfig 79s fonts-glyphicons-halflings graphviz libann0 libcairo2 libcares2 libcdt5 79s libcgraph6 libdatrie1 libgts-0.7-5t64 libgvc6 libgvpr2 libice6 79s libjs-bootstrap liblab-gamut1 libltdl7 libnode115 libpango-1.0-0 79s libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libsm6 79s libthai-data libthai0 libxaw7 libxcb-render0 libxcb-shm0 libxmu6 libxrender1 79s libxslt1.1 libxt6t64 libyaml-cpp0.8 node-acorn node-cjs-module-lexer 79s node-undici node-xtend nodejs python3-arcp python3-argcomplete 79s python3-cachecontrol python3-coloredlogs python3-cwl-utils python3-dateutil 79s python3-filelock python3-humanfriendly python3-isodate python3-lxml 79s python3-mistune python3-msgpack python3-mypy-extensions python3-networkx 79s python3-packaging python3-prov python3-psutil python3-pydot python3-rdflib 79s python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad 79s python3-shellescape python3-six python3-spython seqan-raptor 79s seqan-raptor-doc x11-common 79s 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. 79s Need to get 38.1 MB/38.1 MB of archives. 79s After this operation, 189 MB of additional disk space will be used. 79s Get:1 /tmp/autopkgtest.Voz39s/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [740 B] 79s Get:2 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8-1build1 [132 kB] 79s Get:3 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ruamel.yaml all 0.17.21-1 [86.6 kB] 79s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-msgpack amd64 1.0.3-3build2 [80.1 kB] 79s Get:5 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cachecontrol all 0.14.0-1 [19.0 kB] 79s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mistune all 3.0.2-1 [32.8 kB] 79s Get:7 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mypy-extensions all 1.0.0-1 [6148 B] 79s Get:8 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-isodate all 0.6.1-2 [24.3 kB] 79s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-rdflib all 7.0.0-1 [405 kB] 79s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-filelock all 3.15.4-1 [12.8 kB] 79s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 79s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 79s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-schema-salad amd64 8.5.20240410123758-1 [1037 kB] 79s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 cwl-upgrader all 1.2.11-1 [16.0 kB] 79s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-argcomplete all 3.4.0-1 [34.6 kB] 79s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-humanfriendly all 10.0-5 [70.5 kB] 79s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 79s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.1-1 [41.4 kB] 79s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cwl-utils all 0.33-1 [119 kB] 79s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-six all 1.16.0-6 [13.0 kB] 79s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 79s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 79s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.2-1 [1243 kB] 79s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 80s Get:25 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-prov all 2.0.1-1 [95.5 kB] 80s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB] 80s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libann0 amd64 1.1.2+doc-9build1 [25.5 kB] 80s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcdt5 amd64 2.42.4-1 [21.6 kB] 80s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcgraph6 amd64 2.42.4-1 [44.7 kB] 80s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2build1 [161 kB] 80s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB] 80s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 80s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 80s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 80s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo2 amd64 1.18.0-3build1 [566 kB] 80s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libltdl7 amd64 2.4.7-7build1 [40.3 kB] 80s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 80s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 80s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 80s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 80s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [233 kB] 80s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [42.3 kB] 80s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [28.7 kB] 80s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpathplan4 amd64 2.42.4-1 [24.0 kB] 80s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgvc6 amd64 2.42.4-1 [716 kB] 80s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgvpr2 amd64 2.42.4-1 [187 kB] 80s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblab-gamut1 amd64 2.42.4-1 [1898 kB] 80s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 80s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB] 80s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB] 80s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 80s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 80s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libxaw7 amd64 2:1.0.14-1build2 [187 kB] 80s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 graphviz amd64 2.42.4-1 [641 kB] 80s Get:55 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pydot all 2.0.0-3 [24.9 kB] 80s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-shellescape all 3.4.1-5 [5064 B] 80s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-spython all 0.3.13-2 [56.2 kB] 80s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-arcp all 0.2.1-6 [13.6 kB] 80s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 cwltool all 3.1.20240508115724-1 [509 kB] 80s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 libcares2 amd64 1.32.3-1 [82.3 kB] 80s Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-xtend all 4.0.2-3 [3902 B] 80s Get:62 http://ftpmaster.internal/ubuntu oracular/universe amd64 nodejs amd64 20.15.0+dfsg-1ubuntu3 [332 kB] 80s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-acorn all 8.8.1+ds+~cs25.17.7-2 [115 kB] 80s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-cjs-module-lexer all 1.2.3+dfsg-1 [32.1 kB] 80s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-undici all 5.28.4+dfsg1+~cs23.12.11-2 [321 kB] 80s Get:66 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnode115 amd64 20.15.0+dfsg-1ubuntu3 [13.0 MB] 80s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6build1 [115 kB] 80s Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 seqan-raptor amd64 3.0.1+ds-5 [711 kB] 80s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 seqan-raptor-doc all 3.0.1+ds-5 [1247 kB] 80s Fetched 38.1 MB in 1s (39.1 MB/s) 80s Selecting previously unselected package python3-ruamel.yaml.clib:amd64. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74530 files and directories currently installed.) 80s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8-1build1_amd64.deb ... 80s Unpacking python3-ruamel.yaml.clib:amd64 (0.2.8-1build1) ... 80s Selecting previously unselected package python3-ruamel.yaml. 80s Preparing to unpack .../01-python3-ruamel.yaml_0.17.21-1_all.deb ... 80s Unpacking python3-ruamel.yaml (0.17.21-1) ... 80s Selecting previously unselected package python3-msgpack. 80s Preparing to unpack .../02-python3-msgpack_1.0.3-3build2_amd64.deb ... 80s Unpacking python3-msgpack (1.0.3-3build2) ... 80s Selecting previously unselected package python3-cachecontrol. 80s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 80s Unpacking python3-cachecontrol (0.14.0-1) ... 80s Selecting previously unselected package python3-mistune. 80s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 80s Unpacking python3-mistune (3.0.2-1) ... 80s Selecting previously unselected package python3-mypy-extensions. 80s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 80s Unpacking python3-mypy-extensions (1.0.0-1) ... 80s Selecting previously unselected package python3-isodate. 81s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 81s Unpacking python3-isodate (0.6.1-2) ... 81s Selecting previously unselected package python3-rdflib. 81s Preparing to unpack .../07-python3-rdflib_7.0.0-1_all.deb ... 81s Unpacking python3-rdflib (7.0.0-1) ... 81s Selecting previously unselected package python3-filelock. 81s Preparing to unpack .../08-python3-filelock_3.15.4-1_all.deb ... 81s Unpacking python3-filelock (3.15.4-1) ... 81s Selecting previously unselected package fonts-glyphicons-halflings. 81s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 81s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 81s Selecting previously unselected package libjs-bootstrap. 81s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 81s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 81s Selecting previously unselected package python3-schema-salad. 81s Preparing to unpack .../11-python3-schema-salad_8.5.20240410123758-1_amd64.deb ... 81s Unpacking python3-schema-salad (8.5.20240410123758-1) ... 81s Selecting previously unselected package cwl-upgrader. 81s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 81s Unpacking cwl-upgrader (1.2.11-1) ... 81s Selecting previously unselected package python3-argcomplete. 81s Preparing to unpack .../13-python3-argcomplete_3.4.0-1_all.deb ... 81s Unpacking python3-argcomplete (3.4.0-1) ... 81s Selecting previously unselected package python3-humanfriendly. 81s Preparing to unpack .../14-python3-humanfriendly_10.0-5_all.deb ... 81s Unpacking python3-humanfriendly (10.0-5) ... 81s Selecting previously unselected package python3-coloredlogs. 81s Preparing to unpack .../15-python3-coloredlogs_15.0.1-1_all.deb ... 81s Unpacking python3-coloredlogs (15.0.1-1) ... 81s Selecting previously unselected package python3-packaging. 81s Preparing to unpack .../16-python3-packaging_24.1-1_all.deb ... 81s Unpacking python3-packaging (24.1-1) ... 81s Selecting previously unselected package python3-cwl-utils. 81s Preparing to unpack .../17-python3-cwl-utils_0.33-1_all.deb ... 81s Unpacking python3-cwl-utils (0.33-1) ... 81s Selecting previously unselected package python3-six. 81s Preparing to unpack .../18-python3-six_1.16.0-6_all.deb ... 81s Unpacking python3-six (1.16.0-6) ... 81s Selecting previously unselected package python3-dateutil. 81s Preparing to unpack .../19-python3-dateutil_2.9.0-2_all.deb ... 81s Unpacking python3-dateutil (2.9.0-2) ... 81s Selecting previously unselected package libxslt1.1:amd64. 81s Preparing to unpack .../20-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 81s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 81s Selecting previously unselected package python3-lxml:amd64. 81s Preparing to unpack .../21-python3-lxml_5.2.2-1_amd64.deb ... 81s Unpacking python3-lxml:amd64 (5.2.2-1) ... 81s Selecting previously unselected package python3-networkx. 81s Preparing to unpack .../22-python3-networkx_3.2.1-4ubuntu1_all.deb ... 81s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 82s Selecting previously unselected package python3-prov. 82s Preparing to unpack .../23-python3-prov_2.0.1-1_all.deb ... 82s Unpacking python3-prov (2.0.1-1) ... 82s Selecting previously unselected package python3-psutil. 82s Preparing to unpack .../24-python3-psutil_5.9.8-2build2_amd64.deb ... 82s Unpacking python3-psutil (5.9.8-2build2) ... 82s Selecting previously unselected package libann0. 82s Preparing to unpack .../25-libann0_1.1.2+doc-9build1_amd64.deb ... 82s Unpacking libann0 (1.1.2+doc-9build1) ... 82s Selecting previously unselected package libcdt5:amd64. 82s Preparing to unpack .../26-libcdt5_2.42.4-1_amd64.deb ... 82s Unpacking libcdt5:amd64 (2.42.4-1) ... 82s Selecting previously unselected package libcgraph6:amd64. 82s Preparing to unpack .../27-libcgraph6_2.42.4-1_amd64.deb ... 82s Unpacking libcgraph6:amd64 (2.42.4-1) ... 82s Selecting previously unselected package libgts-0.7-5t64:amd64. 82s Preparing to unpack .../28-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_amd64.deb ... 82s Unpacking libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2build1) ... 82s Selecting previously unselected package libpixman-1-0:amd64. 82s Preparing to unpack .../29-libpixman-1-0_0.42.2-1build1_amd64.deb ... 82s Unpacking libpixman-1-0:amd64 (0.42.2-1build1) ... 82s Selecting previously unselected package libxcb-render0:amd64. 82s Preparing to unpack .../30-libxcb-render0_1.17.0-2_amd64.deb ... 82s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 82s Selecting previously unselected package libxcb-shm0:amd64. 82s Preparing to unpack .../31-libxcb-shm0_1.17.0-2_amd64.deb ... 82s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 82s Selecting previously unselected package libxrender1:amd64. 82s Preparing to unpack .../32-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 82s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 82s Selecting previously unselected package libcairo2:amd64. 82s Preparing to unpack .../33-libcairo2_1.18.0-3build1_amd64.deb ... 82s Unpacking libcairo2:amd64 (1.18.0-3build1) ... 82s Selecting previously unselected package libltdl7:amd64. 82s Preparing to unpack .../34-libltdl7_2.4.7-7build1_amd64.deb ... 82s Unpacking libltdl7:amd64 (2.4.7-7build1) ... 82s Selecting previously unselected package fontconfig. 82s Preparing to unpack .../35-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 82s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 82s Selecting previously unselected package libthai-data. 82s Preparing to unpack .../36-libthai-data_0.1.29-2build1_all.deb ... 82s Unpacking libthai-data (0.1.29-2build1) ... 82s Selecting previously unselected package libdatrie1:amd64. 82s Preparing to unpack .../37-libdatrie1_0.2.13-3build1_amd64.deb ... 82s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 82s Selecting previously unselected package libthai0:amd64. 82s Preparing to unpack .../38-libthai0_0.1.29-2build1_amd64.deb ... 82s Unpacking libthai0:amd64 (0.1.29-2build1) ... 82s Selecting previously unselected package libpango-1.0-0:amd64. 82s Preparing to unpack .../39-libpango-1.0-0_1.54.0+ds-1_amd64.deb ... 82s Unpacking libpango-1.0-0:amd64 (1.54.0+ds-1) ... 82s Selecting previously unselected package libpangoft2-1.0-0:amd64. 82s Preparing to unpack .../40-libpangoft2-1.0-0_1.54.0+ds-1_amd64.deb ... 82s Unpacking libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... 82s Selecting previously unselected package libpangocairo-1.0-0:amd64. 82s Preparing to unpack .../41-libpangocairo-1.0-0_1.54.0+ds-1_amd64.deb ... 82s Unpacking libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... 82s Selecting previously unselected package libpathplan4:amd64. 82s Preparing to unpack .../42-libpathplan4_2.42.4-1_amd64.deb ... 82s Unpacking libpathplan4:amd64 (2.42.4-1) ... 82s Selecting previously unselected package libgvc6. 82s Preparing to unpack .../43-libgvc6_2.42.4-1_amd64.deb ... 82s Unpacking libgvc6 (2.42.4-1) ... 82s Selecting previously unselected package libgvpr2:amd64. 82s Preparing to unpack .../44-libgvpr2_2.42.4-1_amd64.deb ... 82s Unpacking libgvpr2:amd64 (2.42.4-1) ... 82s Selecting previously unselected package liblab-gamut1:amd64. 82s Preparing to unpack .../45-liblab-gamut1_2.42.4-1_amd64.deb ... 82s Unpacking liblab-gamut1:amd64 (2.42.4-1) ... 82s Selecting previously unselected package x11-common. 83s Preparing to unpack .../46-x11-common_1%3a7.7+23ubuntu3_all.deb ... 83s Unpacking x11-common (1:7.7+23ubuntu3) ... 83s Selecting previously unselected package libice6:amd64. 83s Preparing to unpack .../47-libice6_2%3a1.0.10-1build3_amd64.deb ... 83s Unpacking libice6:amd64 (2:1.0.10-1build3) ... 83s Selecting previously unselected package libsm6:amd64. 83s Preparing to unpack .../48-libsm6_2%3a1.2.3-1build3_amd64.deb ... 83s Unpacking libsm6:amd64 (2:1.2.3-1build3) ... 83s Selecting previously unselected package libxt6t64:amd64. 83s Preparing to unpack .../49-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 83s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 83s Selecting previously unselected package libxmu6:amd64. 83s Preparing to unpack .../50-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 83s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 83s Selecting previously unselected package libxaw7:amd64. 83s Preparing to unpack .../51-libxaw7_2%3a1.0.14-1build2_amd64.deb ... 83s Unpacking libxaw7:amd64 (2:1.0.14-1build2) ... 83s Selecting previously unselected package graphviz. 83s Preparing to unpack .../52-graphviz_2.42.4-1_amd64.deb ... 83s Unpacking graphviz (2.42.4-1) ... 83s Selecting previously unselected package python3-pydot. 83s Preparing to unpack .../53-python3-pydot_2.0.0-3_all.deb ... 83s Unpacking python3-pydot (2.0.0-3) ... 83s Selecting previously unselected package python3-shellescape. 83s Preparing to unpack .../54-python3-shellescape_3.4.1-5_all.deb ... 83s Unpacking python3-shellescape (3.4.1-5) ... 83s Selecting previously unselected package python3-spython. 83s Preparing to unpack .../55-python3-spython_0.3.13-2_all.deb ... 83s Unpacking python3-spython (0.3.13-2) ... 83s Selecting previously unselected package python3-arcp. 83s Preparing to unpack .../56-python3-arcp_0.2.1-6_all.deb ... 83s Unpacking python3-arcp (0.2.1-6) ... 83s Selecting previously unselected package cwltool. 83s Preparing to unpack .../57-cwltool_3.1.20240508115724-1_all.deb ... 83s Unpacking cwltool (3.1.20240508115724-1) ... 83s Selecting previously unselected package libcares2:amd64. 83s Preparing to unpack .../58-libcares2_1.32.3-1_amd64.deb ... 83s Unpacking libcares2:amd64 (1.32.3-1) ... 83s Selecting previously unselected package node-xtend. 83s Preparing to unpack .../59-node-xtend_4.0.2-3_all.deb ... 83s Unpacking node-xtend (4.0.2-3) ... 83s Selecting previously unselected package nodejs. 83s Preparing to unpack .../60-nodejs_20.15.0+dfsg-1ubuntu3_amd64.deb ... 83s Unpacking nodejs (20.15.0+dfsg-1ubuntu3) ... 83s Selecting previously unselected package node-acorn. 83s Preparing to unpack .../61-node-acorn_8.8.1+ds+~cs25.17.7-2_all.deb ... 83s Unpacking node-acorn (8.8.1+ds+~cs25.17.7-2) ... 83s Selecting previously unselected package node-cjs-module-lexer. 83s Preparing to unpack .../62-node-cjs-module-lexer_1.2.3+dfsg-1_all.deb ... 83s Unpacking node-cjs-module-lexer (1.2.3+dfsg-1) ... 83s Selecting previously unselected package node-undici. 83s Preparing to unpack .../63-node-undici_5.28.4+dfsg1+~cs23.12.11-2_all.deb ... 83s Unpacking node-undici (5.28.4+dfsg1+~cs23.12.11-2) ... 83s Selecting previously unselected package libnode115:amd64. 83s Preparing to unpack .../64-libnode115_20.15.0+dfsg-1ubuntu3_amd64.deb ... 83s Unpacking libnode115:amd64 (20.15.0+dfsg-1ubuntu3) ... 83s Selecting previously unselected package libyaml-cpp0.8:amd64. 83s Preparing to unpack .../65-libyaml-cpp0.8_0.8.0+dfsg-6build1_amd64.deb ... 83s Unpacking libyaml-cpp0.8:amd64 (0.8.0+dfsg-6build1) ... 83s Selecting previously unselected package seqan-raptor. 83s Preparing to unpack .../66-seqan-raptor_3.0.1+ds-5_amd64.deb ... 83s Unpacking seqan-raptor (3.0.1+ds-5) ... 84s Selecting previously unselected package seqan-raptor-doc. 84s Preparing to unpack .../67-seqan-raptor-doc_3.0.1+ds-5_all.deb ... 84s Unpacking seqan-raptor-doc (3.0.1+ds-5) ... 84s Selecting previously unselected package autopkgtest-satdep. 84s Preparing to unpack .../68-1-autopkgtest-satdep.deb ... 84s Unpacking autopkgtest-satdep (0) ... 84s Setting up python3-arcp (0.2.1-6) ... 84s Setting up libpixman-1-0:amd64 (0.42.2-1build1) ... 84s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 86s Regenerating fonts cache... done. 86s Setting up python3-filelock (3.15.4-1) ... 86s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 86s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 86s Setting up libxcb-render0:amd64 (1.17.0-2) ... 86s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 86s Setting up python3-mypy-extensions (1.0.0-1) ... 86s Setting up libyaml-cpp0.8:amd64 (0.8.0+dfsg-6build1) ... 86s Setting up liblab-gamut1:amd64 (2.42.4-1) ... 86s Setting up python3-ruamel.yaml.clib:amd64 (0.2.8-1build1) ... 86s Setting up x11-common (1:7.7+23ubuntu3) ... 86s Setting up node-cjs-module-lexer (1.2.3+dfsg-1) ... 86s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 86s Setting up python3-networkx (3.2.1-4ubuntu1) ... 88s Setting up libcairo2:amd64 (1.18.0-3build1) ... 88s Setting up python3-psutil (5.9.8-2build2) ... 88s Setting up python3-six (1.16.0-6) ... 88s Setting up python3-isodate (0.6.1-2) ... 88s Setting up python3-packaging (24.1-1) ... 88s Setting up python3-humanfriendly (10.0-5) ... 88s Setting up python3-spython (0.3.13-2) ... 89s Setting up libpathplan4:amd64 (2.42.4-1) ... 89s Setting up libann0 (1.1.2+doc-9build1) ... 89s Setting up libcares2:amd64 (1.32.3-1) ... 89s Setting up libltdl7:amd64 (2.4.7-7build1) ... 89s Setting up python3-ruamel.yaml (0.17.21-1) ... 89s Setting up node-undici (5.28.4+dfsg1+~cs23.12.11-2) ... 89s Setting up python3-rdflib (7.0.0-1) ... 89s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 89s Setting up libthai-data (0.1.29-2build1) ... 89s Setting up python3-dateutil (2.9.0-2) ... 89s Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2build1) ... 89s Setting up python3-msgpack (1.0.3-3build2) ... 89s Setting up libcdt5:amd64 (2.42.4-1) ... 89s Setting up libcgraph6:amd64 (2.42.4-1) ... 89s Setting up python3-cachecontrol (0.14.0-1) ... 90s Setting up python3-shellescape (3.4.1-5) ... 90s Setting up node-xtend (4.0.2-3) ... 90s Setting up seqan-raptor (3.0.1+ds-5) ... 90s Setting up python3-argcomplete (3.4.0-1) ... 90s Setting up python3-coloredlogs (15.0.1-1) ... 90s Setting up seqan-raptor-doc (3.0.1+ds-5) ... 90s Setting up python3-mistune (3.0.2-1) ... 90s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 90s Setting up libice6:amd64 (2:1.0.10-1build3) ... 90s Setting up python3-schema-salad (8.5.20240410123758-1) ... 90s Setting up libthai0:amd64 (0.1.29-2build1) ... 90s Setting up cwl-upgrader (1.2.11-1) ... 91s Setting up libgvpr2:amd64 (2.42.4-1) ... 91s Setting up python3-lxml:amd64 (5.2.2-1) ... 91s Setting up libsm6:amd64 (2:1.2.3-1build3) ... 91s Setting up libpango-1.0-0:amd64 (1.54.0+ds-1) ... 91s Setting up python3-cwl-utils (0.33-1) ... 91s Setting up python3-prov (2.0.1-1) ... 92s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 92s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... 92s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... 92s Setting up libxmu6:amd64 (2:1.1.3-3build2) ... 92s Setting up libxaw7:amd64 (2:1.0.14-1build2) ... 92s Setting up libgvc6 (2.42.4-1) ... 92s Setting up graphviz (2.42.4-1) ... 92s Setting up python3-pydot (2.0.0-3) ... 92s Setting up cwltool (3.1.20240508115724-1) ... 92s Setting up libnode115:amd64 (20.15.0+dfsg-1ubuntu3) ... 92s Setting up nodejs (20.15.0+dfsg-1ubuntu3) ... 92s update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode 92s Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... 92s Setting up autopkgtest-satdep (0) ... 92s Processing triggers for libc-bin (2.39-0ubuntu9) ... 92s Processing triggers for man-db (2.12.1-2) ... 96s (Reading database ... 82424 files and directories currently installed.) 96s Removing autopkgtest-satdep (0) ... 96s autopkgtest [15:59:55]: test cwl: [----------------------- 96s INFO /usr/bin/cwltool 3.1.20240508115724 96s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 98s INFO [job raptor-build.cwl] /tmp/autopkgtest.Voz39s/autopkgtest_tmp/3f7oq9bj$ raptor \ 98s build \ 98s --input \ 98s input_bins_filepaths.txt \ 98s --output \ 98s 0_bins_window_19.index 98s ============= Timings ============= 98s Wall clock time [s]: 0.00 98s Peak memory usage [MiB]: 64.0 98s Determine IBF size [s]: 0.00 98s Index allocation [s]: 0.00 98s User bin I/O avg per thread [s]: 0.00 98s User bin I/O sum [s]: 0.00 98s Fill IBF avg per thread [s]: 0.00 98s Fill IBF sum [s]: 0.00 98s Store index [s]: 0.00 98s INFO [job raptor-build.cwl] completed success 98s INFO Final process status is success 98s "checksum": "sha1$098169f476fb949b0d08f2d1e05881049819b811", 98s INFO /usr/bin/cwltool 3.1.20240508115724 98s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 100s INFO [job raptor-build.cwl] /tmp/autopkgtest.Voz39s/autopkgtest_tmp/b08csuat$ raptor \ 100s build \ 100s --input \ 100s input_bins_filepaths.txt \ 100s --output \ 100s 0_bins_window_19.index 100s ============= Timings ============= 100s Wall clock time [s]: 0.01 100s Peak memory usage [MiB]: 65.0 100s Determine IBF size [s]: 0.00 100s Index allocation [s]: 0.00 100s User bin I/O avg per thread [s]: 0.00 100s User bin I/O sum [s]: 0.00 100s Fill IBF avg per thread [s]: 0.00 100s Fill IBF sum [s]: 0.00 100s Store index [s]: 0.00 100s INFO [job raptor-build.cwl] completed success 100s INFO Final process status is success 100s "checksum": "sha1$64a4328eb3dab99bf6ecd38f84f4ae45fd01a4dd", 101s autopkgtest [16:00:00]: test cwl: -----------------------] 101s autopkgtest [16:00:00]: test cwl: - - - - - - - - - - results - - - - - - - - - - 101s cwl PASS 101s autopkgtest [16:00:00]: test run-unit-test: preparing testbed 192s autopkgtest [16:01:31]: testbed dpkg architecture: amd64 192s autopkgtest [16:01:31]: testbed apt version: 2.9.6 192s autopkgtest [16:01:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 192s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 192s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [436 kB] 192s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB] 192s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 192s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B] 192s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [53.4 kB] 192s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [94.8 kB] 192s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 192s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 192s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 192s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 192s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [498 kB] 192s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [296 kB] 192s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 192s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [8792 B] 192s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 192s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 194s Fetched 1634 kB in 0s (4377 kB/s) 194s Reading package lists... 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 196s Calculating upgrade... 196s The following packages will be upgraded: 196s bpfcc-tools bpftrace libbpfcc liblz4-1 mawk python3-bpfcc 196s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 196s Need to get 13.9 MB of archives. 196s After this operation, 37.8 MB of additional disk space will be used. 196s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 liblz4-1 amd64 1.9.4-3 [63.1 kB] 196s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 mawk amd64 1.3.4.20240622-2 [127 kB] 196s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libbpfcc amd64 0.30.0+ds-1ubuntu2 [644 kB] 196s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bpfcc all 0.30.0+ds-1ubuntu2 [40.3 kB] 196s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 bpfcc-tools all 0.30.0+ds-1ubuntu2 [697 kB] 196s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 bpftrace amd64 0.21.0-1ubuntu6 [12.3 MB] 197s Fetched 13.9 MB in 0s (45.4 MB/s) 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 197s Preparing to unpack .../liblz4-1_1.9.4-3_amd64.deb ... 197s Unpacking liblz4-1:amd64 (1.9.4-3) over (1.9.4-2) ... 197s Setting up liblz4-1:amd64 (1.9.4-3) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 197s Preparing to unpack .../mawk_1.3.4.20240622-2_amd64.deb ... 197s Unpacking mawk (1.3.4.20240622-2) over (1.3.4.20240622-1) ... 197s Preparing to unpack .../libbpfcc_0.30.0+ds-1ubuntu2_amd64.deb ... 197s Unpacking libbpfcc:amd64 (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 197s Preparing to unpack .../python3-bpfcc_0.30.0+ds-1ubuntu2_all.deb ... 197s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 197s Preparing to unpack .../bpfcc-tools_0.30.0+ds-1ubuntu2_all.deb ... 197s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 197s Preparing to unpack .../bpftrace_0.21.0-1ubuntu6_amd64.deb ... 197s Unpacking bpftrace (0.21.0-1ubuntu6) over (0.20.2-1ubuntu4) ... 198s Setting up mawk (1.3.4.20240622-2) ... 198s Setting up libbpfcc:amd64 (0.30.0+ds-1ubuntu2) ... 198s Setting up python3-bpfcc (0.30.0+ds-1ubuntu2) ... 198s Setting up bpftrace (0.21.0-1ubuntu6) ... 198s Setting up bpfcc-tools (0.30.0+ds-1ubuntu2) ... 198s Processing triggers for man-db (2.12.1-2) ... 199s Processing triggers for libc-bin (2.39-0ubuntu9) ... 199s Reading package lists... 199s Building dependency tree... 199s Reading state information... 200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 200s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 200s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 200s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 200s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 201s Reading package lists... 201s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Calculating upgrade... 202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 202s Reading package lists... 203s Building dependency tree... 203s Reading state information... 203s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 207s The following additional packages will be installed: 207s cmake cmake-data cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 207s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 207s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu googletest libasan8 libatomic1 207s libbz2-dev libcc1-0 libcereal-dev libgcc-14-dev libgtest-dev libhwasan0 207s libisl23 libitm1 libjsoncpp25 liblsan0 libmpc3 libpkgconf3 libquadmath0 207s librhash0 libseqan3-dev libsimde-dev libstdc++-14-dev libtsan2 libubsan1 207s libxxhash-dev libyaml-cpp-dev libyaml-cpp0.8 pkg-config pkgconf pkgconf-bin 207s rapidjson-dev seqan-raptor seqan-raptor-doc zlib1g-dev 207s Suggested packages: 207s cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-14-locales 207s cpp-14-doc g++-multilib g++-14-multilib gcc-14-doc gcc-multilib manpages-dev 207s autoconf automake libtool flex bison gdb gcc-doc gcc-14-multilib 207s gdb-x86-64-linux-gnu libstdc++-14-doc rapidjson-doc cwl-runner 207s Recommended packages: 207s bzip2-doc 207s The following NEW packages will be installed: 207s autopkgtest-satdep cmake cmake-data cpp cpp-14 cpp-14-x86-64-linux-gnu 207s cpp-x86-64-linux-gnu g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu 207s gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu googletest libasan8 207s libatomic1 libbz2-dev libcc1-0 libcereal-dev libgcc-14-dev libgtest-dev 207s libhwasan0 libisl23 libitm1 libjsoncpp25 liblsan0 libmpc3 libpkgconf3 207s libquadmath0 librhash0 libseqan3-dev libsimde-dev libstdc++-14-dev libtsan2 207s libubsan1 libxxhash-dev libyaml-cpp-dev libyaml-cpp0.8 pkg-config pkgconf 207s pkgconf-bin rapidjson-dev seqan-raptor seqan-raptor-doc zlib1g-dev 207s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 207s Need to get 84.7 MB/84.7 MB of archives. 207s After this operation, 307 MB of additional disk space will be used. 207s Get:1 /tmp/autopkgtest.Voz39s/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [776 B] 207s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libjsoncpp25 amd64 1.9.5-6build1 [82.8 kB] 207s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 librhash0 amd64 1.4.3-3build1 [129 kB] 207s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 cmake-data all 3.29.6-1 [2193 kB] 207s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 cmake amd64 3.29.6-1 [11.4 MB] 207s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB] 207s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB] 207s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-14-x86-64-linux-gnu amd64 14.1.0-5ubuntu1 [11.9 MB] 207s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-14 amd64 14.1.0-5ubuntu1 [1030 B] 207s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 207s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 207s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14.1.0-5ubuntu1 [47.6 kB] 207s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-5ubuntu1 [29.1 kB] 207s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-5ubuntu1 [10.3 kB] 207s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-5ubuntu1 [2997 kB] 207s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-5ubuntu1 [1317 kB] 208s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-5ubuntu1 [2733 kB] 208s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-5ubuntu1 [1178 kB] 208s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-5ubuntu1 [1634 kB] 208s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-5ubuntu1 [153 kB] 208s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-14-dev amd64 14.1.0-5ubuntu1 [2813 kB] 208s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-14-x86-64-linux-gnu amd64 14.1.0-5ubuntu1 [23.4 MB] 208s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-14 amd64 14.1.0-5ubuntu1 [516 kB] 208s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 208s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 208s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-14-dev amd64 14.1.0-5ubuntu1 [2476 kB] 208s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-14-x86-64-linux-gnu amd64 14.1.0-5ubuntu1 [13.4 MB] 208s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-14 amd64 14.1.0-5ubuntu1 [18.0 kB] 208s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 208s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 208s Get:31 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 googletest all 1.15.0-1 [523 kB] 208s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libbz2-dev amd64 1.0.8-5.1 [33.6 kB] 208s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 rapidjson-dev all 1.1.0+dfsg2-7.2 [96.7 kB] 208s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcereal-dev amd64 1.3.2+dfsg-5 [222 kB] 208s Get:35 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 libgtest-dev amd64 1.15.0-1 [276 kB] 208s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libpkgconf3 amd64 1.8.1-3 [30.7 kB] 208s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1ubuntu2 [894 kB] 208s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 libseqan3-dev all 3.3.0+ds-1 [748 kB] 208s Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsimde-dev all 0.8.2-1 [466 kB] 208s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libxxhash-dev amd64 0.8.2-2build1 [76.5 kB] 208s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6build1 [115 kB] 208s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 libyaml-cpp-dev amd64 0.8.0+dfsg-6build1 [188 kB] 208s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 pkgconf-bin amd64 1.8.1-3 [21.0 kB] 208s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 pkgconf amd64 1.8.1-3 [16.8 kB] 208s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 pkg-config amd64 1.8.1-3 [7266 B] 208s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 seqan-raptor amd64 3.0.1+ds-5 [711 kB] 208s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 seqan-raptor-doc all 3.0.1+ds-5 [1247 kB] 208s Fetched 84.7 MB in 1s (118 MB/s) 208s Selecting previously unselected package libjsoncpp25:amd64. 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74530 files and directories currently installed.) 208s Preparing to unpack .../00-libjsoncpp25_1.9.5-6build1_amd64.deb ... 208s Unpacking libjsoncpp25:amd64 (1.9.5-6build1) ... 208s Selecting previously unselected package librhash0:amd64. 208s Preparing to unpack .../01-librhash0_1.4.3-3build1_amd64.deb ... 208s Unpacking librhash0:amd64 (1.4.3-3build1) ... 208s Selecting previously unselected package cmake-data. 208s Preparing to unpack .../02-cmake-data_3.29.6-1_all.deb ... 208s Unpacking cmake-data (3.29.6-1) ... 209s Selecting previously unselected package cmake. 209s Preparing to unpack .../03-cmake_3.29.6-1_amd64.deb ... 209s Unpacking cmake (3.29.6-1) ... 209s Selecting previously unselected package libisl23:amd64. 209s Preparing to unpack .../04-libisl23_0.26-3build1_amd64.deb ... 209s Unpacking libisl23:amd64 (0.26-3build1) ... 209s Selecting previously unselected package libmpc3:amd64. 209s Preparing to unpack .../05-libmpc3_1.3.1-1build1_amd64.deb ... 209s Unpacking libmpc3:amd64 (1.3.1-1build1) ... 209s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 209s Preparing to unpack .../06-cpp-14-x86-64-linux-gnu_14.1.0-5ubuntu1_amd64.deb ... 209s Unpacking cpp-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 209s Selecting previously unselected package cpp-14. 209s Preparing to unpack .../07-cpp-14_14.1.0-5ubuntu1_amd64.deb ... 209s Unpacking cpp-14 (14.1.0-5ubuntu1) ... 209s Selecting previously unselected package cpp-x86-64-linux-gnu. 209s Preparing to unpack .../08-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 209s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 209s Selecting previously unselected package cpp. 209s Preparing to unpack .../09-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 209s Unpacking cpp (4:14.1.0-2ubuntu1) ... 209s Selecting previously unselected package libcc1-0:amd64. 209s Preparing to unpack .../10-libcc1-0_14.1.0-5ubuntu1_amd64.deb ... 209s Unpacking libcc1-0:amd64 (14.1.0-5ubuntu1) ... 209s Selecting previously unselected package libitm1:amd64. 209s Preparing to unpack .../11-libitm1_14.1.0-5ubuntu1_amd64.deb ... 209s Unpacking libitm1:amd64 (14.1.0-5ubuntu1) ... 209s Selecting previously unselected package libatomic1:amd64. 209s Preparing to unpack .../12-libatomic1_14.1.0-5ubuntu1_amd64.deb ... 209s Unpacking libatomic1:amd64 (14.1.0-5ubuntu1) ... 209s Selecting previously unselected package libasan8:amd64. 209s Preparing to unpack .../13-libasan8_14.1.0-5ubuntu1_amd64.deb ... 209s Unpacking libasan8:amd64 (14.1.0-5ubuntu1) ... 210s Selecting previously unselected package liblsan0:amd64. 210s Preparing to unpack .../14-liblsan0_14.1.0-5ubuntu1_amd64.deb ... 210s Unpacking liblsan0:amd64 (14.1.0-5ubuntu1) ... 210s Selecting previously unselected package libtsan2:amd64. 210s Preparing to unpack .../15-libtsan2_14.1.0-5ubuntu1_amd64.deb ... 210s Unpacking libtsan2:amd64 (14.1.0-5ubuntu1) ... 210s Selecting previously unselected package libubsan1:amd64. 210s Preparing to unpack .../16-libubsan1_14.1.0-5ubuntu1_amd64.deb ... 210s Unpacking libubsan1:amd64 (14.1.0-5ubuntu1) ... 210s Selecting previously unselected package libhwasan0:amd64. 210s Preparing to unpack .../17-libhwasan0_14.1.0-5ubuntu1_amd64.deb ... 210s Unpacking libhwasan0:amd64 (14.1.0-5ubuntu1) ... 210s Selecting previously unselected package libquadmath0:amd64. 210s Preparing to unpack .../18-libquadmath0_14.1.0-5ubuntu1_amd64.deb ... 210s Unpacking libquadmath0:amd64 (14.1.0-5ubuntu1) ... 210s Selecting previously unselected package libgcc-14-dev:amd64. 210s Preparing to unpack .../19-libgcc-14-dev_14.1.0-5ubuntu1_amd64.deb ... 210s Unpacking libgcc-14-dev:amd64 (14.1.0-5ubuntu1) ... 210s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 210s Preparing to unpack .../20-gcc-14-x86-64-linux-gnu_14.1.0-5ubuntu1_amd64.deb ... 210s Unpacking gcc-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 210s Selecting previously unselected package gcc-14. 210s Preparing to unpack .../21-gcc-14_14.1.0-5ubuntu1_amd64.deb ... 210s Unpacking gcc-14 (14.1.0-5ubuntu1) ... 210s Selecting previously unselected package gcc-x86-64-linux-gnu. 210s Preparing to unpack .../22-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 210s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 210s Selecting previously unselected package gcc. 210s Preparing to unpack .../23-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 210s Unpacking gcc (4:14.1.0-2ubuntu1) ... 210s Selecting previously unselected package libstdc++-14-dev:amd64. 210s Preparing to unpack .../24-libstdc++-14-dev_14.1.0-5ubuntu1_amd64.deb ... 210s Unpacking libstdc++-14-dev:amd64 (14.1.0-5ubuntu1) ... 211s Selecting previously unselected package g++-14-x86-64-linux-gnu. 211s Preparing to unpack .../25-g++-14-x86-64-linux-gnu_14.1.0-5ubuntu1_amd64.deb ... 211s Unpacking g++-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 211s Selecting previously unselected package g++-14. 211s Preparing to unpack .../26-g++-14_14.1.0-5ubuntu1_amd64.deb ... 211s Unpacking g++-14 (14.1.0-5ubuntu1) ... 211s Selecting previously unselected package g++-x86-64-linux-gnu. 211s Preparing to unpack .../27-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 211s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 211s Selecting previously unselected package g++. 211s Preparing to unpack .../28-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 211s Unpacking g++ (4:14.1.0-2ubuntu1) ... 211s Selecting previously unselected package googletest. 211s Preparing to unpack .../29-googletest_1.15.0-1_all.deb ... 211s Unpacking googletest (1.15.0-1) ... 211s Selecting previously unselected package libbz2-dev:amd64. 211s Preparing to unpack .../30-libbz2-dev_1.0.8-5.1_amd64.deb ... 211s Unpacking libbz2-dev:amd64 (1.0.8-5.1) ... 211s Selecting previously unselected package rapidjson-dev. 211s Preparing to unpack .../31-rapidjson-dev_1.1.0+dfsg2-7.2_all.deb ... 211s Unpacking rapidjson-dev (1.1.0+dfsg2-7.2) ... 211s Selecting previously unselected package libcereal-dev. 211s Preparing to unpack .../32-libcereal-dev_1.3.2+dfsg-5_amd64.deb ... 211s Unpacking libcereal-dev (1.3.2+dfsg-5) ... 211s Selecting previously unselected package libgtest-dev:amd64. 211s Preparing to unpack .../33-libgtest-dev_1.15.0-1_amd64.deb ... 211s Unpacking libgtest-dev:amd64 (1.15.0-1) ... 211s Selecting previously unselected package libpkgconf3:amd64. 211s Preparing to unpack .../34-libpkgconf3_1.8.1-3_amd64.deb ... 211s Unpacking libpkgconf3:amd64 (1.8.1-3) ... 211s Selecting previously unselected package zlib1g-dev:amd64. 211s Preparing to unpack .../35-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_amd64.deb ... 211s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ... 211s Selecting previously unselected package libseqan3-dev. 211s Preparing to unpack .../36-libseqan3-dev_3.3.0+ds-1_all.deb ... 211s Unpacking libseqan3-dev (3.3.0+ds-1) ... 211s Selecting previously unselected package libsimde-dev. 211s Preparing to unpack .../37-libsimde-dev_0.8.2-1_all.deb ... 211s Unpacking libsimde-dev (0.8.2-1) ... 212s Selecting previously unselected package libxxhash-dev:amd64. 212s Preparing to unpack .../38-libxxhash-dev_0.8.2-2build1_amd64.deb ... 212s Unpacking libxxhash-dev:amd64 (0.8.2-2build1) ... 212s Selecting previously unselected package libyaml-cpp0.8:amd64. 212s Preparing to unpack .../39-libyaml-cpp0.8_0.8.0+dfsg-6build1_amd64.deb ... 212s Unpacking libyaml-cpp0.8:amd64 (0.8.0+dfsg-6build1) ... 212s Selecting previously unselected package libyaml-cpp-dev:amd64. 212s Preparing to unpack .../40-libyaml-cpp-dev_0.8.0+dfsg-6build1_amd64.deb ... 212s Unpacking libyaml-cpp-dev:amd64 (0.8.0+dfsg-6build1) ... 212s Selecting previously unselected package pkgconf-bin. 212s Preparing to unpack .../41-pkgconf-bin_1.8.1-3_amd64.deb ... 212s Unpacking pkgconf-bin (1.8.1-3) ... 212s Selecting previously unselected package pkgconf:amd64. 212s Preparing to unpack .../42-pkgconf_1.8.1-3_amd64.deb ... 212s Unpacking pkgconf:amd64 (1.8.1-3) ... 212s Selecting previously unselected package pkg-config:amd64. 212s Preparing to unpack .../43-pkg-config_1.8.1-3_amd64.deb ... 212s Unpacking pkg-config:amd64 (1.8.1-3) ... 212s Selecting previously unselected package seqan-raptor. 212s Preparing to unpack .../44-seqan-raptor_3.0.1+ds-5_amd64.deb ... 212s Unpacking seqan-raptor (3.0.1+ds-5) ... 212s Selecting previously unselected package seqan-raptor-doc. 212s Preparing to unpack .../45-seqan-raptor-doc_3.0.1+ds-5_all.deb ... 212s Unpacking seqan-raptor-doc (3.0.1+ds-5) ... 212s Selecting previously unselected package autopkgtest-satdep. 212s Preparing to unpack .../46-2-autopkgtest-satdep.deb ... 212s Unpacking autopkgtest-satdep (0) ... 212s Setting up libsimde-dev (0.8.2-1) ... 212s Setting up libyaml-cpp0.8:amd64 (0.8.0+dfsg-6build1) ... 212s Setting up libyaml-cpp-dev:amd64 (0.8.0+dfsg-6build1) ... 212s Setting up googletest (1.15.0-1) ... 212s Setting up rapidjson-dev (1.1.0+dfsg2-7.2) ... 212s Setting up libpkgconf3:amd64 (1.8.1-3) ... 212s Setting up libquadmath0:amd64 (14.1.0-5ubuntu1) ... 212s Setting up libmpc3:amd64 (1.3.1-1build1) ... 212s Setting up libatomic1:amd64 (14.1.0-5ubuntu1) ... 212s Setting up libjsoncpp25:amd64 (1.9.5-6build1) ... 212s Setting up pkgconf-bin (1.8.1-3) ... 212s Setting up libxxhash-dev:amd64 (0.8.2-2build1) ... 212s Setting up libubsan1:amd64 (14.1.0-5ubuntu1) ... 212s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ... 212s Setting up libhwasan0:amd64 (14.1.0-5ubuntu1) ... 212s Setting up librhash0:amd64 (1.4.3-3build1) ... 212s Setting up libasan8:amd64 (14.1.0-5ubuntu1) ... 212s Setting up cmake-data (3.29.6-1) ... 212s Setting up libtsan2:amd64 (14.1.0-5ubuntu1) ... 212s Setting up libisl23:amd64 (0.26-3build1) ... 212s Setting up seqan-raptor (3.0.1+ds-5) ... 212s Setting up seqan-raptor-doc (3.0.1+ds-5) ... 212s Setting up libcc1-0:amd64 (14.1.0-5ubuntu1) ... 212s Setting up liblsan0:amd64 (14.1.0-5ubuntu1) ... 212s Setting up libitm1:amd64 (14.1.0-5ubuntu1) ... 212s Setting up libbz2-dev:amd64 (1.0.8-5.1) ... 212s Setting up libgtest-dev:amd64 (1.15.0-1) ... 212s Setting up libcereal-dev (1.3.2+dfsg-5) ... 212s Setting up pkgconf:amd64 (1.8.1-3) ... 212s Setting up pkg-config:amd64 (1.8.1-3) ... 212s Setting up cpp-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 212s Setting up cpp-14 (14.1.0-5ubuntu1) ... 212s Setting up cmake (3.29.6-1) ... 212s Setting up libgcc-14-dev:amd64 (14.1.0-5ubuntu1) ... 212s Setting up libstdc++-14-dev:amd64 (14.1.0-5ubuntu1) ... 212s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 212s Setting up libseqan3-dev (3.3.0+ds-1) ... 212s Setting up cpp (4:14.1.0-2ubuntu1) ... 212s Setting up gcc-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 212s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 212s Setting up gcc-14 (14.1.0-5ubuntu1) ... 212s Setting up g++-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 212s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 212s Setting up g++-14 (14.1.0-5ubuntu1) ... 212s Setting up gcc (4:14.1.0-2ubuntu1) ... 212s Setting up g++ (4:14.1.0-2ubuntu1) ... 212s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 212s Setting up autopkgtest-satdep (0) ... 212s Processing triggers for man-db (2.12.1-2) ... 213s Processing triggers for libc-bin (2.39-0ubuntu9) ... 215s (Reading database ... 81658 files and directories currently installed.) 215s Removing autopkgtest-satdep (0) ... 218s autopkgtest [16:01:57]: test run-unit-test: [----------------------- 218s + pkg=seqan-raptor 218s + export LC_ALL=C.UTF-8 218s + LC_ALL=C.UTF-8 218s + '[' /tmp/autopkgtest.Voz39s/autopkgtest_tmp = '' ']' 218s + cp -r CHANGELOG.md CMakeLists.txt CODE_OF_CONDUCT.md INSTALL.md LICENSE.md README.md build_system debian doc include lib src test util workflow /tmp/autopkgtest.Voz39s/autopkgtest_tmp 218s + export 'CXXFLAGS=-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.Voz39s/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.Voz39s/autopkgtest_tmp/lib/submodules/lemon/include/' 218s + CXXFLAGS='-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.Voz39s/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.Voz39s/autopkgtest_tmp/lib/submodules/lemon/include/' 218s + cd /tmp/autopkgtest.Voz39s/autopkgtest_tmp 218s + patch -p1 218s + cd /tmp/autopkgtest.Voz39s/autopkgtest_tmp/test/unit 218s + cmake -DRAPTOR_SUBMODULES_DIR=/tmp/autopkgtest.Voz39s/autopkgtest_tmp/test/unit/../../lib -DRAPTOR_NATIVE_BUILD=OFF . 218s patching file test/raptor-test.cmake 218s -- The CXX compiler identification is GNU 14.1.0 218s -- The C compiler identification is GNU 14.1.0 218s -- Detecting CXX compiler ABI info 218s -- Detecting CXX compiler ABI info - done 218s -- Check for working CXX compiler: /usr/bin/c++ - skipped 218s -- Detecting CXX compile features 218s -- Detecting CXX compile features - done 218s -- Detecting C compiler ABI info 219s -- Detecting C compiler ABI info - done 219s -- Check for working C compiler: /usr/bin/cc - skipped 219s -- Detecting C compile features 219s -- Detecting C compile features - done 219s -- Finding RAPTOR and checking requirements: 219s -- RAPTOR include dir found: /tmp/autopkgtest.Voz39s/autopkgtest_tmp/include 219s -- Detected as running from a repository checkout… 219s -- …adding submodule include: /tmp/autopkgtest.Voz39s/autopkgtest_tmp/lib/chopper/include 219s -- …adding submodule include: /tmp/autopkgtest.Voz39s/autopkgtest_tmp/lib/robin-hood-hashing/src/include 219s -- …adding submodule include: /tmp/autopkgtest.Voz39s/autopkgtest_tmp/lib/sharg-parser/include 219s -- …adding submodule include: /tmp/autopkgtest.Voz39s/autopkgtest_tmp/lib/sharg-parser/test/include 219s -- …adding submodule include: /tmp/autopkgtest.Voz39s/autopkgtest_tmp/lib/submodules/lemon/include 219s -- C++ Standard-20 support: via -std=c++20 220s -- OpenMP Support: via -fopenmp 220s -- SIMD-OpenMP Support: via -fopenmp-simd 220s -- Suppressing GCC 4 warnings: via -Wno-psabi 220s -- Optimize build: via -mpopcnt 220s -- Link Time Optimization: enabled 220s -- Binary-stripping: via -s 220s -- Thread support: builtin 220s -- Optional dependency: ZLIB-1.3 found 220s -- Optional dependency: BZip2-1.0.8 found 220s -- Optional dependency: libexecinfo found 220s -- Found Raptor: /tmp/autopkgtest.Voz39s/autopkgtest_tmp/include 220s -- Finding program ccache 220s -- Finding program ccache - Failed 223s -- You can run `make` to build the application. 223s -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 223s -- Checking for module 'libxxhash' 223s -- Found libxxhash, version 0.8.2 223s -- Test dependency: Google Test 1.15.0 found. 223s -- Configuring done (5.1s) 223s -- Generating done (0.1s) 223s -- Build files have been written to: /tmp/autopkgtest.Voz39s/autopkgtest_tmp/test/unit 223s + make 223s [ 1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o 225s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 225s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 225s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 225s from /tmp/autopkgtest.Voz39s/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 225s from /tmp/autopkgtest.Voz39s/autopkgtest_tmp/include/raptor/argument_parsing/compute_bin_size.hpp:15, 225s from /tmp/autopkgtest.Voz39s/autopkgtest_tmp/src/upgrade/raptor_upgrade.cpp:13: 225s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 225s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 225s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230s In file included from /usr/include/cereal/archives/json.hpp:67, 230s from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/cereal.hpp:17, 230s from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vector_il.hpp:21, 230s from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp:13, 230s from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:18, 230s from /tmp/autopkgtest.Voz39s/autopkgtest_tmp/include/raptor/hierarchical_interleaved_bloom_filter.hpp:17, 230s from /tmp/autopkgtest.Voz39s/autopkgtest_tmp/include/raptor/index.hpp:18, 230s from /tmp/autopkgtest.Voz39s/autopkgtest_tmp/include/raptor/upgrade/index_upgrader.hpp:16, 230s from /tmp/autopkgtest.Voz39s/autopkgtest_tmp/src/upgrade/raptor_upgrade.cpp:16: 230s /usr/include/rapidjson/document.h: In member function ‘rapidjson::GenericStringRef& rapidjson::GenericStringRef::operator=(const rapidjson::GenericStringRef&)’: 230s /usr/include/rapidjson/document.h:319:82: error: assignment of read-only member ‘rapidjson::GenericStringRef::length’ 230s 319 | GenericStringRef& operator=(const GenericStringRef& rhs) { s = rhs.s; length = rhs.length; } 230s | ~~~~~~~^~~~~~~~~~~~ 238s make[2]: *** [src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make:76: src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o] Error 1 238s make[1]: *** [CMakeFiles/Makefile2:750: src/upgrade/CMakeFiles/raptor_upgrade.dir/all] Error 2 238s make: *** [Makefile:146: all] Error 2 238s autopkgtest [16:02:17]: test run-unit-test: -----------------------] 238s autopkgtest [16:02:17]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 238s run-unit-test FAIL non-zero exit status 2 238s autopkgtest [16:02:17]: @@@@@@@@@@@@@@@@@@@@ summary 238s cwl PASS 238s run-unit-test FAIL non-zero exit status 2 254s nova [W] Skipping flock for amd64 254s Creating nova instance adt-oracular-amd64-seqan-raptor-20240726-155819-juju-7f2275-prod-proposed-migration-environment-2-555e2b95-fad6-4d3f-9875-258df942c70b from image adt/ubuntu-oracular-amd64-server-20240726.img (UUID 6c5f29e9-79d7-45b1-9721-03e2205f6a0e)... 254s nova [W] Skipping flock for amd64 254s Creating nova instance adt-oracular-amd64-seqan-raptor-20240726-155819-juju-7f2275-prod-proposed-migration-environment-2-555e2b95-fad6-4d3f-9875-258df942c70b from image adt/ubuntu-oracular-amd64-server-20240726.img (UUID 6c5f29e9-79d7-45b1-9721-03e2205f6a0e)...