0s autopkgtest [08:05:43]: starting date and time: 2024-05-24 08:05:43+0000
  0s autopkgtest [08:05:43]: git checkout: 699e7f9f ssh-setup/nova: explicitely set 'fqdn' in cloud-init
  0s autopkgtest [08:05:43]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rn5q0yaj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-collapse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/3.5.1+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-87.secgroup --name adt-oracular-amd64-r-cran-collapse-20240524-080540-juju-7f2275-prod-proposed-migration-environment-2-dee70ba1-304c-4df9-bd24-3f9f581c5e75 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
666s autopkgtest [08:16:49]: testbed dpkg architecture: amd64
666s autopkgtest [08:16:49]: testbed apt version: 2.9.3
666s autopkgtest [08:16:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup
667s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB]
667s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [497 kB]
667s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3388 B]
667s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [53.5 kB]
667s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B]
667s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [171 kB]
667s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [132 kB]
667s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [7700 B]
667s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [191 kB]
667s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [518 kB]
667s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [2536 B]
667s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [1392 B]
667s Fetched 1653 kB in 0s (5425 kB/s)
667s Reading package lists...
671s Reading package lists...
671s Building dependency tree...
671s Reading state information...
671s Calculating upgrade...
672s The following packages will be upgraded:
672s   libclang-cpp18 libclang1-18 libllvm18
672s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
672s Need to get 48.8 MB of archives.
672s After this operation, 726 kB of additional disk space will be used.
672s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 libclang-cpp18 amd64 1:18.1.6-1 [13.5 MB]
672s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm18 amd64 1:18.1.6-1 [27.5 MB]
672s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libclang1-18 amd64 1:18.1.6-1 [7804 kB]
672s Fetched 48.8 MB in 0s (105 MB/s)
673s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74358 files and directories currently installed.)
673s Preparing to unpack .../libclang-cpp18_1%3a18.1.6-1_amd64.deb ...
673s Unpacking libclang-cpp18 (1:18.1.6-1) over (1:18.1.3-1) ...
673s Preparing to unpack .../libllvm18_1%3a18.1.6-1_amd64.deb ...
673s Unpacking libllvm18:amd64 (1:18.1.6-1) over (1:18.1.3-1) ...
674s Preparing to unpack .../libclang1-18_1%3a18.1.6-1_amd64.deb ...
674s Unpacking libclang1-18 (1:18.1.6-1) over (1:18.1.3-1) ...
674s Setting up libllvm18:amd64 (1:18.1.6-1) ...
674s Setting up libclang1-18 (1:18.1.6-1) ...
674s Setting up libclang-cpp18 (1:18.1.6-1) ...
674s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
674s Reading package lists...
674s Building dependency tree...
674s Reading state information...
675s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
675s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
675s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
675s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
675s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
676s Reading package lists...
676s Reading package lists...
677s Building dependency tree...
677s Reading state information...
677s Calculating upgrade...
677s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
677s Reading package lists...
677s Building dependency tree...
677s Reading state information...
678s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
679s autopkgtest [08:17:02]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024
681s autopkgtest [08:17:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-collapse
683s Get:1 http://ftpmaster.internal/ubuntu oracular/universe r-cran-collapse 2.0.13-1 (dsc) [2354 B]
683s Get:2 http://ftpmaster.internal/ubuntu oracular/universe r-cran-collapse 2.0.13-1 (tar) [1405 kB]
683s Get:3 http://ftpmaster.internal/ubuntu oracular/universe r-cran-collapse 2.0.13-1 (diff) [4708 B]
683s gpgv: Signature made Sun May 12 05:09:52 2024 UTC
683s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
683s gpgv:                issuer "tille@debian.org"
683s gpgv: Can't check signature: No public key
683s dpkg-source: warning: cannot verify inline signature for ./r-cran-collapse_2.0.13-1.dsc: no acceptable signature found
683s autopkgtest [08:17:06]: testing package r-cran-collapse version 2.0.13-1
684s autopkgtest [08:17:07]: build not needed
686s autopkgtest [08:17:09]: test run-unit-test: preparing testbed
687s Reading package lists...
687s Building dependency tree...
687s Reading state information...
687s Starting pkgProblemResolver with broken count: 0
687s Starting 2 pkgProblemResolver with broken count: 0
687s Done
688s The following additional packages will be installed:
688s   fontconfig fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax
688s   javascript-common libblas3 libcairo2 libdatrie1 libgfortran5 libgomp1
688s   libgraphite2-3 libharfbuzz0b libice6 libjs-bootstrap libjs-bootstrap4
688s   libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
688s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
688s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
688s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3
688s   liblua5.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
688s   libpaper-utils libpaper1 libpixman-1-0 libsm6 libtcl8.6 libthai-data
688s   libthai0 libtk8.6 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
688s   libxt6t64 littler node-bootstrap-sass node-html5shiv node-normalize.css
688s   pandoc pandoc-data r-base-core r-cran-askpass r-cran-base64enc
688s   r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr
688s   r-cran-cli r-cran-collapse r-cran-colorspace r-cran-commonmark r-cran-covr
688s   r-cran-crayon r-cran-curl r-cran-data.table r-cran-desc r-cran-diffobj
688s   r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver
688s   r-cran-fastmap r-cran-fontawesome r-cran-formula r-cran-fs r-cran-generics
688s   r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr r-cran-htmltools
688s   r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite
688s   r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval
688s   r-cran-lifecycle r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass
688s   r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime
688s   r-cran-misctools r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar
688s   r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm
688s   r-cran-praise r-cran-processx r-cran-promises r-cran-ps r-cran-r6
688s   r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp
688s   r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rdpack r-cran-rematch2
688s   r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sandwich
688s   r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi
688s   r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyselect
688s   r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo
688s   r-cran-withr r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo
688s   unzip x11-common xdg-utils zip
688s Suggested packages:
688s   apache2 | lighttpd | httpd libjs-jquery-ui-docs fonts-mathjax-extras
688s   fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended
688s   texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context
688s   wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex
688s   citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib
688s   r-base-html r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd
688s   r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-viridis r-cran-rstudioapi
688s   r-cran-magick r-cran-sf r-cran-getopt r-cran-clue r-cran-tinytest
688s   r-cran-bit64 r-cran-dbi r-cran-formattable r-cran-nanotime
688s   r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr
688s   r-cran-roxygen2 r-cran-inline r-cran-hmisc r-cran-rvest r-cran-spelling
688s   r-cran-bench r-cran-blob r-cran-here r-cran-hms r-cran-purrr r-cran-tidyr
688s Recommended packages:
688s   node-jquery r-recommended r-base-dev r-doc-html r-cran-future
688s   r-cran-thematic r-cran-mockery r-cran-spelling r-cran-htmlwidgets
688s   r-cran-rstudioapi r-cran-whoami r-cran-xml2 r-cran-dt r-cran-webutils
688s   r-cran-bit64 r-cran-bit r-cran-r.utils r-cran-nanotime r-cran-gh
688s   r-cran-bench r-cran-broom r-cran-dbi r-cran-dbplyr r-cran-lobstr
688s   r-cran-purrr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-tidyr
688s   r-cran-unitizer r-cran-rsvg r-cran-hexbin r-cran-hmisc r-cran-mapproj
688s   r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg
688s   r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-markdown
688s   r-cran-testit r-cran-cairo r-cran-jpeg r-cran-png r-cran-readr r-cran-r.rsp
688s   r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-magick
688s   r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot
688s   node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-runit r-cran-sodium
688s   r-cran-lubridate r-cran-cpp11 r-cran-bitops r-cran-mathjaxr r-cran-mockr
688s   r-cran-remotes r-cran-aer r-cran-car r-cran-spdep r-cran-statmod r-cran-urca
688s   r-cran-foreign r-cran-bookdown r-cran-webfakes r-cran-pingr r-cran-gbrd
688s   r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit
688s   r-cran-dichromat r-cran-hms r-cran-formattable r-cran-pkgdown r-cran-zeallot
688s   r-cran-renv r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron
688s   r-cran-tinytest libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
688s   x11-utils x11-xserver-utils
688s The following NEW packages will be installed:
688s   autopkgtest-satdep fontconfig fonts-font-awesome fonts-glyphicons-halflings
688s   fonts-mathjax javascript-common libblas3 libcairo2 libdatrie1 libgfortran5
688s   libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjs-bootstrap
688s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
688s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
688s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
688s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3
688s   liblua5.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
688s   libpaper-utils libpaper1 libpixman-1-0 libsm6 libtcl8.6 libthai-data
688s   libthai0 libtk8.6 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
688s   libxt6t64 littler node-bootstrap-sass node-html5shiv node-normalize.css
688s   pandoc pandoc-data r-base-core r-cran-askpass r-cran-base64enc
688s   r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr
688s   r-cran-cli r-cran-collapse r-cran-colorspace r-cran-commonmark r-cran-covr
688s   r-cran-crayon r-cran-curl r-cran-data.table r-cran-desc r-cran-diffobj
688s   r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver
688s   r-cran-fastmap r-cran-fontawesome r-cran-formula r-cran-fs r-cran-generics
688s   r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr r-cran-htmltools
688s   r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite
688s   r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval
688s   r-cran-lifecycle r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass
688s   r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime
688s   r-cran-misctools r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar
688s   r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm
688s   r-cran-praise r-cran-processx r-cran-promises r-cran-ps r-cran-r6
688s   r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp
688s   r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rdpack r-cran-rematch2
688s   r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sandwich
688s   r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi
688s   r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyselect
688s   r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo
688s   r-cran-withr r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo
688s   unzip x11-common xdg-utils zip
688s 0 upgraded, 162 newly installed, 0 to remove and 0 not upgraded.
688s Need to get 149 MB/149 MB of archives.
688s After this operation, 490 MB of additional disk space will be used.
688s Get:1 /tmp/autopkgtest.n8xHCh/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [804 B]
688s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB]
688s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
688s Get:4 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
688s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
688s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 javascript-common all 11+nmu1 [5936 B]
688s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB]
688s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB]
688s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
688s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
688s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
688s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo2 amd64 1.18.0-3build1 [566 kB]
688s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
688s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB]
688s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB]
688s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2build1 [73.0 kB]
688s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB]
688s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
688s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB]
688s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
688s Get:21 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
688s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
688s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
688s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
688s Get:25 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
688s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
688s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
688s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
688s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
688s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
688s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
688s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
688s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
688s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB]
688s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 liblua5.4-0 amd64 5.4.6-3build2 [166 kB]
688s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
688s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
688s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libpango-1.0-0 amd64 1.52.2+ds-1 [233 kB]
688s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangoft2-1.0-0 amd64 1.52.2+ds-1 [42.6 kB]
688s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangocairo-1.0-0 amd64 1.52.2+ds-1 [28.7 kB]
688s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 libpaper1 amd64 1.1.29build1 [13.4 kB]
688s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 libpaper-utils amd64 1.1.29build1 [8650 B]
688s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB]
688s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB]
688s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
688s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
688s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB]
688s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
688s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 zip amd64 3.0-13build1 [175 kB]
688s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 unzip amd64 6.0-28ubuntu4 [175 kB]
688s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
688s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-base-core amd64 4.4.0-2 [28.5 MB]
689s Get:53 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-littler amd64 0.3.20-1 [96.0 kB]
689s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 littler all 0.3.20-1 [2486 B]
689s Get:55 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
689s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
689s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
689s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 pandoc-data all 3.1.3-2build2 [78.3 kB]
689s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 pandoc amd64 3.1.3+ds-3build1 [26.9 MB]
689s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB]
689s Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB]
689s Get:62 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
689s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB]
689s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
689s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
689s Get:66 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
689s Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
689s Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-digest amd64 0.6.35-1 [195 kB]
689s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
689s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
689s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
689s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
689s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
689s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
689s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
689s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
689s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1build2 [229 kB]
689s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
689s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
689s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
689s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB]
689s Get:82 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB]
689s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB]
689s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
689s Get:85 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
689s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
689s Get:87 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-collapse amd64 2.0.13-1 [3130 kB]
689s Get:88 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB]
689s Get:89 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB]
689s Get:90 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB]
689s Get:91 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rex all 1.2.1-1 [129 kB]
689s Get:92 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1build2 [177 kB]
689s Get:93 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2build2 [402 kB]
689s Get:94 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
689s Get:95 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
689s Get:96 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
689s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-yaml amd64 2.3.8-2 [108 kB]
689s Get:98 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB]
689s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB]
689s Get:100 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
689s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB]
689s Get:102 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB]
689s Get:103 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
689s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
689s Get:105 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
689s Get:106 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
689s Get:107 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
689s Get:108 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
689s Get:109 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
689s Get:110 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB]
689s Get:111 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB]
689s Get:112 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB]
689s Get:113 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-farver amd64 2.1.1-2 [1349 kB]
689s Get:114 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
689s Get:115 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-formula all 1.2-5-1 [158 kB]
689s Get:116 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
689s Get:117 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
689s Get:118 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB]
689s Get:119 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
689s Get:120 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-nlme amd64 3.1.164-1build1 [2261 kB]
689s Get:121 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB]
689s Get:122 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
689s Get:123 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
689s Get:124 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB]
689s Get:125 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
689s Get:126 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
689s Get:127 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
689s Get:128 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
689s Get:129 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-xfun amd64 0.44+dfsg-1 [518 kB]
689s Get:130 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-highr all 0.10+dfsg-2 [38.5 kB]
689s Get:131 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB]
689s Get:132 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB]
689s Get:133 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
689s Get:134 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
689s Get:135 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-knitr all 1.46+dfsg-1 [911 kB]
689s Get:136 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB]
689s Get:137 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB]
689s Get:138 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB]
689s Get:139 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-sandwich all 3.1-0-1 [1484 kB]
689s Get:140 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-maxlik all 1.5-2-1 [1550 kB]
689s Get:141 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB]
689s Get:142 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB]
689s Get:143 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB]
689s Get:144 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rbibutils amd64 2.2.16-1 [754 kB]
689s Get:145 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rdpack all 2.6-1 [742 kB]
689s Get:146 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-plm all 2.6-4-1 [2161 kB]
689s Get:147 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
689s Get:148 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.3.0-1 [863 kB]
689s Get:149 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.0-1build1 [1425 kB]
689s Get:150 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
689s Get:151 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB]
689s Get:152 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
689s Get:153 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-tinytex all 0.49-1 [141 kB]
689s Get:154 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB]
689s Get:155 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
689s Get:156 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
689s Get:157 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
689s Get:158 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB]
689s Get:159 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
689s Get:160 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB]
689s Get:161 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB]
689s Get:162 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-xts amd64 0.13.2-1 [772 kB]
690s Preconfiguring packages ...
690s Fetched 149 MB in 1s (122 MB/s)
690s Selecting previously unselected package fontconfig.
690s (Reading database ... 
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(Reading database ... 74359 files and directories currently installed.)
690s Preparing to unpack .../000-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ...
690s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
690s Selecting previously unselected package fonts-font-awesome.
690s Preparing to unpack .../001-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
690s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
690s Selecting previously unselected package fonts-glyphicons-halflings.
690s Preparing to unpack .../002-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
690s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
690s Selecting previously unselected package fonts-mathjax.
690s Preparing to unpack .../003-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
690s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
690s Selecting previously unselected package javascript-common.
690s Preparing to unpack .../004-javascript-common_11+nmu1_all.deb ...
690s Unpacking javascript-common (11+nmu1) ...
690s Selecting previously unselected package libblas3:amd64.
690s Preparing to unpack .../005-libblas3_3.12.0-3build1_amd64.deb ...
690s Unpacking libblas3:amd64 (3.12.0-3build1) ...
690s Selecting previously unselected package libpixman-1-0:amd64.
690s Preparing to unpack .../006-libpixman-1-0_0.42.2-1build1_amd64.deb ...
690s Unpacking libpixman-1-0:amd64 (0.42.2-1build1) ...
690s Selecting previously unselected package libxcb-render0:amd64.
690s Preparing to unpack .../007-libxcb-render0_1.17.0-2_amd64.deb ...
690s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
690s Selecting previously unselected package libxcb-shm0:amd64.
690s Preparing to unpack .../008-libxcb-shm0_1.17.0-2_amd64.deb ...
690s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
691s Selecting previously unselected package libxrender1:amd64.
691s Preparing to unpack .../009-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
691s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
691s Selecting previously unselected package libcairo2:amd64.
691s Preparing to unpack .../010-libcairo2_1.18.0-3build1_amd64.deb ...
691s Unpacking libcairo2:amd64 (1.18.0-3build1) ...
691s Selecting previously unselected package libdatrie1:amd64.
691s Preparing to unpack .../011-libdatrie1_0.2.13-3build1_amd64.deb ...
691s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
691s Selecting previously unselected package libgfortran5:amd64.
691s Preparing to unpack .../012-libgfortran5_14.1.0-1ubuntu1_amd64.deb ...
691s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ...
691s Selecting previously unselected package libgomp1:amd64.
691s Preparing to unpack .../013-libgomp1_14.1.0-1ubuntu1_amd64.deb ...
691s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ...
691s Selecting previously unselected package libgraphite2-3:amd64.
691s Preparing to unpack .../014-libgraphite2-3_1.3.14-2build1_amd64.deb ...
691s Unpacking libgraphite2-3:amd64 (1.3.14-2build1) ...
691s Selecting previously unselected package libharfbuzz0b:amd64.
691s Preparing to unpack .../015-libharfbuzz0b_8.3.0-2build2_amd64.deb ...
691s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ...
691s Selecting previously unselected package x11-common.
691s Preparing to unpack .../016-x11-common_1%3a7.7+23ubuntu3_all.deb ...
691s Unpacking x11-common (1:7.7+23ubuntu3) ...
691s Selecting previously unselected package libice6:amd64.
691s Preparing to unpack .../017-libice6_2%3a1.0.10-1build3_amd64.deb ...
691s Unpacking libice6:amd64 (2:1.0.10-1build3) ...
691s Selecting previously unselected package libjs-bootstrap.
691s Preparing to unpack .../018-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
691s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
691s Selecting previously unselected package libjs-popper.js.
691s Preparing to unpack .../019-libjs-popper.js_1.16.1+ds-6_all.deb ...
691s Unpacking libjs-popper.js (1.16.1+ds-6) ...
691s Selecting previously unselected package libjs-bootstrap4.
691s Preparing to unpack .../020-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
691s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
691s Selecting previously unselected package libjs-d3.
691s Preparing to unpack .../021-libjs-d3_3.5.17-4_all.deb ...
691s Unpacking libjs-d3 (3.5.17-4) ...
691s Selecting previously unselected package libjs-es5-shim.
691s Preparing to unpack .../022-libjs-es5-shim_4.6.7-2_all.deb ...
691s Unpacking libjs-es5-shim (4.6.7-2) ...
691s Selecting previously unselected package libjs-highlight.js.
691s Preparing to unpack .../023-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
691s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
691s Selecting previously unselected package libjs-jquery.
691s Preparing to unpack .../024-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
691s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
691s Selecting previously unselected package libjs-jquery-datatables.
691s Preparing to unpack .../025-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
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692s Selecting previously unselected package r-cran-littler.
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693s Selecting previously unselected package r-cran-sys.
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693s Selecting previously unselected package r-cran-askpass.
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693s Selecting previously unselected package r-cran-base64enc.
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693s Selecting previously unselected package r-cran-bdsmatrix.
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693s Selecting previously unselected package r-cran-brio.
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693s Selecting previously unselected package r-cran-rlang.
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694s Selecting previously unselected package r-cran-fastmap.
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694s Selecting previously unselected package r-cran-cachem.
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694s Selecting previously unselected package r-cran-digest.
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694s Selecting previously unselected package r-cran-htmltools.
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694s Selecting previously unselected package r-cran-jquerylib.
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694s Selecting previously unselected package r-cran-jsonlite.
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694s Selecting previously unselected package r-cran-cli.
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694s Selecting previously unselected package r-cran-glue.
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694s Selecting previously unselected package r-cran-lifecycle.
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694s Selecting previously unselected package r-cran-memoise.
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694s Selecting previously unselected package r-cran-mime.
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694s Selecting previously unselected package r-cran-fs.
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694s Selecting previously unselected package r-cran-r6.
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694s Selecting previously unselected package r-cran-rappdirs.
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694s Selecting previously unselected package r-cran-sass.
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694s Selecting previously unselected package r-cran-bslib.
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694s Selecting previously unselected package r-cran-ps.
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694s Selecting previously unselected package r-cran-processx.
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694s Selecting previously unselected package r-cran-callr.
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694s Selecting previously unselected package r-cran-pkgkitten.
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694s Selecting previously unselected package r-cran-rcpp.
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695s Selecting previously unselected package r-cran-commonmark.
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695s Selecting previously unselected package r-cran-lazyeval.
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695s Selecting previously unselected package r-cran-rex.
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695s Selecting previously unselected package r-cran-curl.
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695s Selecting previously unselected package r-cran-openssl.
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695s Selecting previously unselected package r-cran-httr.
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695s Selecting previously unselected package r-cran-crayon.
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695s Selecting previously unselected package r-cran-withr.
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695s Selecting previously unselected package r-cran-yaml.
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695s Selecting previously unselected package r-cran-covr.
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695s Selecting previously unselected package r-cran-data.table.
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695s Selecting previously unselected package r-cran-desc.
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695s Selecting previously unselected package r-cran-diffobj.
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695s Selecting previously unselected package r-cran-magrittr.
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695s Selecting previously unselected package r-cran-fansi.
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695s Selecting previously unselected package r-cran-utf8.
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695s Selecting previously unselected package r-cran-vctrs.
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695s Selecting previously unselected package r-cran-pillar.
695s Preparing to unpack .../105-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
695s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
695s Selecting previously unselected package r-cran-pkgconfig.
695s Preparing to unpack .../106-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
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696s Selecting previously unselected package r-cran-tibble.
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703s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
703s Selecting previously unselected package r-cran-tidyselect.
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703s Selecting previously unselected package r-cran-dplyr.
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703s Selecting previously unselected package r-cran-evaluate.
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703s Selecting previously unselected package r-cran-farver.
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703s Selecting previously unselected package r-cran-fontawesome.
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703s Selecting previously unselected package r-cran-formula.
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703s Selecting previously unselected package r-cran-gtable.
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703s Selecting previously unselected package r-cran-isoband.
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703s Selecting previously unselected package r-cran-mass.
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703s Unpacking r-cran-mass (7.3-60.0.1-1) ...
703s Selecting previously unselected package r-cran-lattice.
703s Preparing to unpack .../117-r-cran-lattice_0.22-6-1_amd64.deb ...
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703s Selecting previously unselected package r-cran-nlme.
703s Preparing to unpack .../118-r-cran-nlme_3.1.164-1build1_amd64.deb ...
703s Unpacking r-cran-nlme (3.1.164-1build1) ...
703s Selecting previously unselected package r-cran-matrix.
703s Preparing to unpack .../119-r-cran-matrix_1.6-5-1_amd64.deb ...
703s Unpacking r-cran-matrix (1.6-5-1) ...
703s Selecting previously unselected package r-cran-mgcv.
703s Preparing to unpack .../120-r-cran-mgcv_1.9-1-1_amd64.deb ...
703s Unpacking r-cran-mgcv (1.9-1-1) ...
703s Selecting previously unselected package r-cran-labeling.
703s Preparing to unpack .../121-r-cran-labeling_0.4.3-1_all.deb ...
703s Unpacking r-cran-labeling (0.4.3-1) ...
703s Selecting previously unselected package r-cran-munsell.
703s Preparing to unpack .../122-r-cran-munsell_0.5.0-2build1_all.deb ...
703s Unpacking r-cran-munsell (0.5.0-2build1) ...
703s Selecting previously unselected package r-cran-rcolorbrewer.
703s Preparing to unpack .../123-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
703s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
703s Selecting previously unselected package r-cran-viridislite.
703s Preparing to unpack .../124-r-cran-viridislite_0.4.2-2_all.deb ...
703s Unpacking r-cran-viridislite (0.4.2-2) ...
703s Selecting previously unselected package r-cran-scales.
703s Preparing to unpack .../125-r-cran-scales_1.3.0-1_all.deb ...
703s Unpacking r-cran-scales (1.3.0-1) ...
703s Selecting previously unselected package r-cran-ggplot2.
703s Preparing to unpack .../126-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
703s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
703s Selecting previously unselected package r-cran-xfun.
703s Preparing to unpack .../127-r-cran-xfun_0.44+dfsg-1_amd64.deb ...
703s Unpacking r-cran-xfun (0.44+dfsg-1) ...
703s Selecting previously unselected package r-cran-highr.
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703s Unpacking r-cran-highr (0.10+dfsg-2) ...
703s Selecting previously unselected package r-cran-later.
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703s Unpacking r-cran-later (1.3.2+dfsg-1) ...
703s Selecting previously unselected package r-cran-promises.
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703s Setting up r-cran-htmltools (0.5.8.1-1) ...
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703s Setting up r-cran-mgcv (1.9-1-1) ...
703s Setting up r-cran-cachem (1.0.8-1) ...
703s Setting up r-cran-lmtest (0.9.40-1) ...
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703s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ...
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703s Setting up r-cran-munsell (0.5.0-2build1) ...
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703s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
703s Setting up r-cran-httr (1.4.7+dfsg-1) ...
703s Setting up r-cran-scales (1.3.0-1) ...
703s Setting up r-cran-memoise (2.0.1-1) ...
703s Setting up r-cran-covr (3.6.4+dfsg-1) ...
703s Setting up r-cran-promises (1.3.0+dfsg-1) ...
703s Setting up r-cran-maxlik (1.5-2-1) ...
703s Setting up r-cran-pkgbuild (1.4.3-1) ...
703s Setting up r-cran-dplyr (1.1.4-1) ...
703s Setting up r-cran-pkgload (1.3.4-1) ...
703s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
703s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
703s Setting up r-cran-rematch2 (2.1.2-2build1) ...
703s Setting up r-cran-plm (2.6-4-1) ...
703s Setting up r-cran-bslib (0.7.0+dfsg-1) ...
703s Setting up r-cran-waldo (0.5.2-1build1) ...
703s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ...
703s Setting up r-cran-testthat (3.2.1-1) ...
703s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
703s Setting up autopkgtest-satdep (0) ...
703s Processing triggers for man-db (2.12.1-1) ...
703s Processing triggers for install-info (7.1-3build2) ...
703s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
742s (Reading database ... 94963 files and directories currently installed.)
742s Removing autopkgtest-satdep (0) ...
752s autopkgtest [08:18:15]: test run-unit-test: [-----------------------
752s BEGIN TEST testthat.R
752s 
752s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
752s Copyright (C) 2024 The R Foundation for Statistical Computing
752s Platform: x86_64-pc-linux-gnu
752s 
752s R is free software and comes with ABSOLUTELY NO WARRANTY.
752s You are welcome to redistribute it under certain conditions.
752s Type 'license()' or 'licence()' for distribution details.
752s 
752s R is a collaborative project with many contributors.
752s Type 'contributors()' for more information and
752s 'citation()' on how to cite R or R packages in publications.
752s 
752s Type 'demo()' for some demos, 'help()' for on-line help, or
752s 'help.start()' for an HTML browser interface to help.
752s Type 'q()' to quit R.
752s 
752s > # rm(list = ls())
752s > # Sys.setenv(R_TESTS = "")
752s > library(testthat)
752s > options(collapse_export_F = TRUE)
752s > # library(collapse)
752s > 
752s > test_check("collapse")
752s Loading required package: collapse
752s collapse 2.0.13, see ?`collapse-package` or ?`collapse-documentation`
752s 
752s Attaching package: ‘collapse’
752s 
752s The following object is masked from ‘package:stats’:
752s 
752s     D
752s 
845s [ FAIL 0 | WARN 0 | SKIP 1 | PASS 19552 ]
845s 
845s ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
845s • CRAN package kit is not packaged for Debian yet (1): 'test-fmatch.R:14:1'
845s 
845s [ FAIL 0 | WARN 0 | SKIP 1 | PASS 19552 ]
846s > 
846s > 
846s autopkgtest [08:19:49]: test run-unit-test: -----------------------]
847s autopkgtest [08:19:50]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
847s run-unit-test        PASS
847s autopkgtest [08:19:50]: test pkg-r-autopkgtest: preparing testbed
849s Reading package lists...
850s Building dependency tree...
850s Reading state information...
850s Starting pkgProblemResolver with broken count: 0
850s Starting 2 pkgProblemResolver with broken count: 0
850s Done
850s The following additional packages will be installed:
850s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
850s   dctrl-tools g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc
850s   gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran
850s   gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu
850s   icu-devtools libasan8 libatomic1 libblas-dev libbz2-dev libcc1-0
850s   libdeflate-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev
850s   libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev
850s   liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0
850s   libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libquadmath0
850s   libreadline-dev libstdc++-13-dev libtirpc-dev libtsan2 libubsan1
850s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev
850s Suggested packages:
850s   cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib
850s   gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison
850s   gdb gcc-doc gcc-13-multilib gdb-x86-64-linux-gnu gfortran-multilib
850s   gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev
850s   liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
850s   texlive-base texlive-latex-base texlive-plain-generic
850s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
850s   texlive-latex-recommended texlive-latex-extra texinfo
850s Recommended packages:
850s   bzip2-doc libpng-tools
850s The following NEW packages will be installed:
850s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu
850s   cpp-x86-64-linux-gnu dctrl-tools g++ g++-13 g++-13-x86-64-linux-gnu
850s   g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu
850s   gcc-x86-64-linux-gnu gfortran gfortran-13 gfortran-13-x86-64-linux-gnu
850s   gfortran-x86-64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
850s   libbz2-dev libcc1-0 libdeflate-dev libgcc-13-dev libgfortran-13-dev
850s   libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev
850s   libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 libncurses-dev
850s   libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3
850s   libpng-dev libquadmath0 libreadline-dev libstdc++-13-dev libtirpc-dev
850s   libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev
850s   zlib1g-dev
850s 0 upgraded, 58 newly installed, 0 to remove and 0 not upgraded.
850s Need to get 96.0 MB/96.0 MB of archives.
850s After this operation, 353 MB of additional disk space will be used.
850s Get:1 /tmp/autopkgtest.n8xHCh/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [812 B]
850s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB]
850s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB]
850s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB]
850s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.2 MB]
850s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13 amd64 13.2.0-23ubuntu4 [1032 B]
850s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
850s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
850s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14.1.0-1ubuntu1 [48.0 kB]
850s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-1ubuntu1 [29.1 kB]
850s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB]
850s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-1ubuntu1 [3025 kB]
851s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-1ubuntu1 [1313 kB]
851s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-1ubuntu1 [2736 kB]
851s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB]
851s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-1ubuntu1 [1632 kB]
851s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-1ubuntu1 [153 kB]
851s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB]
851s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [21.9 MB]
851s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13 amd64 13.2.0-23ubuntu4 [482 kB]
851s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
851s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
851s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB]
851s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [12.5 MB]
851s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13 amd64 13.2.0-23ubuntu4 [14.5 kB]
851s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
851s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
851s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
851s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
851s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran-13-dev amd64 13.2.0-23ubuntu4 [942 kB]
851s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.6 MB]
851s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 gfortran-13 amd64 13.2.0-23ubuntu4 [11.7 kB]
851s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
851s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
851s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 icu-devtools amd64 74.2-1ubuntu3 [212 kB]
851s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas-dev amd64 3.12.0-3build1 [170 kB]
851s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 libbz2-dev amd64 1.0.8-5.1 [33.6 kB]
851s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libdeflate-dev amd64 1.20-1 [55.8 kB]
851s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libicu-dev amd64 74.2-1ubuntu3 [11.9 MB]
851s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu2 [295 kB]
851s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
851s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
851s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack-dev amd64 3.12.0-3build1 [5196 kB]
851s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu2 [384 kB]
851s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu2 [210 kB]
851s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu2 [197 kB]
851s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu2 [6686 B]
851s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libpcre2-dev amd64 10.42-4ubuntu2 [737 kB]
851s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libpkgconf3 amd64 1.8.1-2build1 [30.7 kB]
851s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1ubuntu2 [894 kB]
851s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 libpng-dev amd64 1.6.43-5build1 [264 kB]
851s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 libreadline-dev amd64 8.2-4build1 [167 kB]
851s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [176 kB]
851s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 pkgconf-bin amd64 1.8.1-2build1 [20.7 kB]
851s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 pkgconf amd64 1.8.1-2build1 [16.8 kB]
851s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
851s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-base-dev all 4.4.0-2 [4340 B]
851s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
851s Fetched 96.0 MB in 1s (121 MB/s)
851s Selecting previously unselected package gcc-13-base:amd64.
851s (Reading database ... 
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851s Preparing to unpack .../00-gcc-13-base_13.2.0-23ubuntu4_amd64.deb ...
851s Unpacking gcc-13-base:amd64 (13.2.0-23ubuntu4) ...
851s Selecting previously unselected package libisl23:amd64.
851s Preparing to unpack .../01-libisl23_0.26-3build1_amd64.deb ...
851s Unpacking libisl23:amd64 (0.26-3build1) ...
852s Selecting previously unselected package libmpc3:amd64.
852s Preparing to unpack .../02-libmpc3_1.3.1-1build1_amd64.deb ...
852s Unpacking libmpc3:amd64 (1.3.1-1build1) ...
852s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
852s Preparing to unpack .../03-cpp-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ...
852s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ...
852s Selecting previously unselected package cpp-13.
852s Preparing to unpack .../04-cpp-13_13.2.0-23ubuntu4_amd64.deb ...
852s Unpacking cpp-13 (13.2.0-23ubuntu4) ...
852s Selecting previously unselected package cpp-x86-64-linux-gnu.
852s Preparing to unpack .../05-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
852s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
852s Selecting previously unselected package cpp.
852s Preparing to unpack .../06-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
852s Unpacking cpp (4:13.2.0-7ubuntu1) ...
852s Selecting previously unselected package libcc1-0:amd64.
852s Preparing to unpack .../07-libcc1-0_14.1.0-1ubuntu1_amd64.deb ...
852s Unpacking libcc1-0:amd64 (14.1.0-1ubuntu1) ...
852s Selecting previously unselected package libitm1:amd64.
852s Preparing to unpack .../08-libitm1_14.1.0-1ubuntu1_amd64.deb ...
852s Unpacking libitm1:amd64 (14.1.0-1ubuntu1) ...
852s Selecting previously unselected package libatomic1:amd64.
852s Preparing to unpack .../09-libatomic1_14.1.0-1ubuntu1_amd64.deb ...
852s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ...
852s Selecting previously unselected package libasan8:amd64.
852s Preparing to unpack .../10-libasan8_14.1.0-1ubuntu1_amd64.deb ...
852s Unpacking libasan8:amd64 (14.1.0-1ubuntu1) ...
852s Selecting previously unselected package liblsan0:amd64.
852s Preparing to unpack .../11-liblsan0_14.1.0-1ubuntu1_amd64.deb ...
852s Unpacking liblsan0:amd64 (14.1.0-1ubuntu1) ...
852s Selecting previously unselected package libtsan2:amd64.
852s Preparing to unpack .../12-libtsan2_14.1.0-1ubuntu1_amd64.deb ...
852s Unpacking libtsan2:amd64 (14.1.0-1ubuntu1) ...
852s Selecting previously unselected package libubsan1:amd64.
852s Preparing to unpack .../13-libubsan1_14.1.0-1ubuntu1_amd64.deb ...
852s Unpacking libubsan1:amd64 (14.1.0-1ubuntu1) ...
852s Selecting previously unselected package libhwasan0:amd64.
852s Preparing to unpack .../14-libhwasan0_14.1.0-1ubuntu1_amd64.deb ...
852s Unpacking libhwasan0:amd64 (14.1.0-1ubuntu1) ...
852s Selecting previously unselected package libquadmath0:amd64.
852s Preparing to unpack .../15-libquadmath0_14.1.0-1ubuntu1_amd64.deb ...
852s Unpacking libquadmath0:amd64 (14.1.0-1ubuntu1) ...
852s Selecting previously unselected package libgcc-13-dev:amd64.
852s Preparing to unpack .../16-libgcc-13-dev_13.2.0-23ubuntu4_amd64.deb ...
852s Unpacking libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ...
852s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
852s Preparing to unpack .../17-gcc-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ...
852s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ...
853s Selecting previously unselected package gcc-13.
853s Preparing to unpack .../18-gcc-13_13.2.0-23ubuntu4_amd64.deb ...
853s Unpacking gcc-13 (13.2.0-23ubuntu4) ...
853s Selecting previously unselected package gcc-x86-64-linux-gnu.
853s Preparing to unpack .../19-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
853s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
853s Selecting previously unselected package gcc.
853s Preparing to unpack .../20-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
853s Unpacking gcc (4:13.2.0-7ubuntu1) ...
853s Selecting previously unselected package libstdc++-13-dev:amd64.
853s Preparing to unpack .../21-libstdc++-13-dev_13.2.0-23ubuntu4_amd64.deb ...
853s Unpacking libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ...
853s Selecting previously unselected package g++-13-x86-64-linux-gnu.
853s Preparing to unpack .../22-g++-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ...
853s Unpacking g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ...
853s Selecting previously unselected package g++-13.
853s Preparing to unpack .../23-g++-13_13.2.0-23ubuntu4_amd64.deb ...
853s Unpacking g++-13 (13.2.0-23ubuntu4) ...
853s Selecting previously unselected package g++-x86-64-linux-gnu.
853s Preparing to unpack .../24-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
853s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
853s Selecting previously unselected package g++.
853s Preparing to unpack .../25-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
853s Unpacking g++ (4:13.2.0-7ubuntu1) ...
853s Selecting previously unselected package build-essential.
853s Preparing to unpack .../26-build-essential_12.10ubuntu1_amd64.deb ...
853s Unpacking build-essential (12.10ubuntu1) ...
853s Selecting previously unselected package dctrl-tools.
853s Preparing to unpack .../27-dctrl-tools_2.24-3build3_amd64.deb ...
853s Unpacking dctrl-tools (2.24-3build3) ...
853s Selecting previously unselected package libgfortran-13-dev:amd64.
853s Preparing to unpack .../28-libgfortran-13-dev_13.2.0-23ubuntu4_amd64.deb ...
853s Unpacking libgfortran-13-dev:amd64 (13.2.0-23ubuntu4) ...
853s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
853s Preparing to unpack .../29-gfortran-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ...
853s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ...
854s Selecting previously unselected package gfortran-13.
854s Preparing to unpack .../30-gfortran-13_13.2.0-23ubuntu4_amd64.deb ...
854s Unpacking gfortran-13 (13.2.0-23ubuntu4) ...
854s Selecting previously unselected package gfortran-x86-64-linux-gnu.
854s Preparing to unpack .../31-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
854s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
854s Selecting previously unselected package gfortran.
854s Preparing to unpack .../32-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
854s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
854s Selecting previously unselected package icu-devtools.
854s Preparing to unpack .../33-icu-devtools_74.2-1ubuntu3_amd64.deb ...
854s Unpacking icu-devtools (74.2-1ubuntu3) ...
854s Selecting previously unselected package libblas-dev:amd64.
854s Preparing to unpack .../34-libblas-dev_3.12.0-3build1_amd64.deb ...
854s Unpacking libblas-dev:amd64 (3.12.0-3build1) ...
854s Selecting previously unselected package libbz2-dev:amd64.
854s Preparing to unpack .../35-libbz2-dev_1.0.8-5.1_amd64.deb ...
854s Unpacking libbz2-dev:amd64 (1.0.8-5.1) ...
854s Selecting previously unselected package libdeflate-dev:amd64.
854s Preparing to unpack .../36-libdeflate-dev_1.20-1_amd64.deb ...
854s Unpacking libdeflate-dev:amd64 (1.20-1) ...
854s Selecting previously unselected package libicu-dev:amd64.
854s Preparing to unpack .../37-libicu-dev_74.2-1ubuntu3_amd64.deb ...
854s Unpacking libicu-dev:amd64 (74.2-1ubuntu3) ...
854s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
854s Preparing to unpack .../38-libjpeg-turbo8-dev_2.1.5-2ubuntu2_amd64.deb ...
854s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ...
854s Selecting previously unselected package libjpeg8-dev:amd64.
854s Preparing to unpack .../39-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
854s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
854s Selecting previously unselected package libjpeg-dev:amd64.
854s Preparing to unpack .../40-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
854s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
854s Selecting previously unselected package liblapack-dev:amd64.
854s Preparing to unpack .../41-liblapack-dev_3.12.0-3build1_amd64.deb ...
854s Unpacking liblapack-dev:amd64 (3.12.0-3build1) ...
854s Selecting previously unselected package libncurses-dev:amd64.
854s Preparing to unpack .../42-libncurses-dev_6.4+20240113-1ubuntu2_amd64.deb ...
854s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu2) ...
854s Selecting previously unselected package libpcre2-16-0:amd64.
854s Preparing to unpack .../43-libpcre2-16-0_10.42-4ubuntu2_amd64.deb ...
854s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu2) ...
854s Selecting previously unselected package libpcre2-32-0:amd64.
854s Preparing to unpack .../44-libpcre2-32-0_10.42-4ubuntu2_amd64.deb ...
854s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu2) ...
854s Selecting previously unselected package libpcre2-posix3:amd64.
854s Preparing to unpack .../45-libpcre2-posix3_10.42-4ubuntu2_amd64.deb ...
854s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu2) ...
854s Selecting previously unselected package libpcre2-dev:amd64.
854s Preparing to unpack .../46-libpcre2-dev_10.42-4ubuntu2_amd64.deb ...
854s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu2) ...
854s Selecting previously unselected package libpkgconf3:amd64.
854s Preparing to unpack .../47-libpkgconf3_1.8.1-2build1_amd64.deb ...
854s Unpacking libpkgconf3:amd64 (1.8.1-2build1) ...
854s Selecting previously unselected package zlib1g-dev:amd64.
854s Preparing to unpack .../48-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_amd64.deb ...
854s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ...
855s Selecting previously unselected package libpng-dev:amd64.
855s Preparing to unpack .../49-libpng-dev_1.6.43-5build1_amd64.deb ...
855s Unpacking libpng-dev:amd64 (1.6.43-5build1) ...
855s Selecting previously unselected package libreadline-dev:amd64.
855s Preparing to unpack .../50-libreadline-dev_8.2-4build1_amd64.deb ...
855s Unpacking libreadline-dev:amd64 (8.2-4build1) ...
855s Selecting previously unselected package liblzma-dev:amd64.
855s Preparing to unpack .../51-liblzma-dev_5.6.1+really5.4.5-1_amd64.deb ...
855s Unpacking liblzma-dev:amd64 (5.6.1+really5.4.5-1) ...
855s Selecting previously unselected package pkgconf-bin.
855s Preparing to unpack .../52-pkgconf-bin_1.8.1-2build1_amd64.deb ...
855s Unpacking pkgconf-bin (1.8.1-2build1) ...
855s Selecting previously unselected package pkgconf:amd64.
855s Preparing to unpack .../53-pkgconf_1.8.1-2build1_amd64.deb ...
855s Unpacking pkgconf:amd64 (1.8.1-2build1) ...
855s Selecting previously unselected package libtirpc-dev:amd64.
855s Preparing to unpack .../54-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ...
855s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
855s Selecting previously unselected package r-base-dev.
855s Preparing to unpack .../55-r-base-dev_4.4.0-2_all.deb ...
855s Unpacking r-base-dev (4.4.0-2) ...
855s Selecting previously unselected package pkg-r-autopkgtest.
855s Preparing to unpack .../56-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
855s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
855s Selecting previously unselected package autopkgtest-satdep.
855s Preparing to unpack .../57-2-autopkgtest-satdep.deb ...
855s Unpacking autopkgtest-satdep (0) ...
855s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ...
855s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu2) ...
855s Setting up libreadline-dev:amd64 (8.2-4build1) ...
855s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu2) ...
855s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu2) ...
855s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
855s Setting up libpkgconf3:amd64 (1.8.1-2build1) ...
855s Setting up gcc-13-base:amd64 (13.2.0-23ubuntu4) ...
855s Setting up libquadmath0:amd64 (14.1.0-1ubuntu1) ...
855s Setting up libmpc3:amd64 (1.3.1-1build1) ...
855s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ...
855s Setting up icu-devtools (74.2-1ubuntu3) ...
855s Setting up pkgconf-bin (1.8.1-2build1) ...
855s Setting up liblzma-dev:amd64 (5.6.1+really5.4.5-1) ...
855s Setting up libubsan1:amd64 (14.1.0-1ubuntu1) ...
855s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ...
855s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu2) ...
855s Setting up libhwasan0:amd64 (14.1.0-1ubuntu1) ...
855s Setting up libasan8:amd64 (14.1.0-1ubuntu1) ...
855s Setting up libtsan2:amd64 (14.1.0-1ubuntu1) ...
855s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
855s Setting up libisl23:amd64 (0.26-3build1) ...
855s Setting up libdeflate-dev:amd64 (1.20-1) ...
855s Setting up libicu-dev:amd64 (74.2-1ubuntu3) ...
855s Setting up libcc1-0:amd64 (14.1.0-1ubuntu1) ...
855s Setting up liblsan0:amd64 (14.1.0-1ubuntu1) ...
855s Setting up libblas-dev:amd64 (3.12.0-3build1) ...
855s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
855s Setting up dctrl-tools (2.24-3build3) ...
855s Setting up libitm1:amd64 (14.1.0-1ubuntu1) ...
855s Setting up libbz2-dev:amd64 (1.0.8-5.1) ...
855s Setting up libpcre2-dev:amd64 (10.42-4ubuntu2) ...
855s Setting up cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ...
855s Setting up libpng-dev:amd64 (1.6.43-5build1) ...
855s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
855s Setting up pkgconf:amd64 (1.8.1-2build1) ...
855s Setting up liblapack-dev:amd64 (3.12.0-3build1) ...
855s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
855s Setting up libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ...
855s Setting up libgfortran-13-dev:amd64 (13.2.0-23ubuntu4) ...
855s Setting up libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ...
855s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
855s Setting up cpp-13 (13.2.0-23ubuntu4) ...
855s Setting up gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ...
855s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ...
855s Setting up gcc-13 (13.2.0-23ubuntu4) ...
855s Setting up cpp (4:13.2.0-7ubuntu1) ...
855s Setting up g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ...
855s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
855s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
855s Setting up gcc (4:13.2.0-7ubuntu1) ...
855s Setting up gfortran-13 (13.2.0-23ubuntu4) ...
855s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
855s Setting up g++-13 (13.2.0-23ubuntu4) ...
855s Setting up gfortran (4:13.2.0-7ubuntu1) ...
855s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
855s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
855s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
855s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
855s Setting up g++ (4:13.2.0-7ubuntu1) ...
855s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
855s Setting up build-essential (12.10ubuntu1) ...
855s Setting up r-base-dev (4.4.0-2) ...
855s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
855s Setting up autopkgtest-satdep (0) ...
855s Processing triggers for man-db (2.12.1-1) ...
856s Processing triggers for install-info (7.1-3build2) ...
856s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
874s (Reading database ... 97045 files and directories currently installed.)
874s Removing autopkgtest-satdep (0) ...
881s autopkgtest [08:20:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
881s autopkgtest [08:20:24]: test pkg-r-autopkgtest: [-----------------------
881s Test: Try to load the R library collapse
881s 
881s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
881s Copyright (C) 2024 The R Foundation for Statistical Computing
881s Platform: x86_64-pc-linux-gnu
881s 
881s R is free software and comes with ABSOLUTELY NO WARRANTY.
881s You are welcome to redistribute it under certain conditions.
881s Type 'license()' or 'licence()' for distribution details.
881s 
881s R is a collaborative project with many contributors.
881s Type 'contributors()' for more information and
881s 'citation()' on how to cite R or R packages in publications.
881s 
881s Type 'demo()' for some demos, 'help()' for on-line help, or
881s 'help.start()' for an HTML browser interface to help.
881s Type 'q()' to quit R.
881s 
881s > library('collapse')
881s collapse 2.0.13, see ?`collapse-package` or ?`collapse-documentation`
881s > 
881s > 
881s 
881s Attaching package: ‘collapse’
881s 
881s The following object is masked from ‘package:stats’:
881s 
881s     D
881s 
881s Other tests are currently unsupported!
881s They will be progressively added.
881s autopkgtest [08:20:24]: test pkg-r-autopkgtest: -----------------------]
882s pkg-r-autopkgtest    PASS
882s autopkgtest [08:20:25]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
882s autopkgtest [08:20:25]: @@@@@@@@@@@@@@@@@@@@ summary
882s run-unit-test        PASS
882s pkg-r-autopkgtest    PASS
901s flock: timeout while waiting to get lock
901s Creating nova instance adt-oracular-amd64-r-cran-collapse-20240524-080540-juju-7f2275-prod-proposed-migration-environment-2-dee70ba1-304c-4df9-bd24-3f9f581c5e75 from image adt/ubuntu-oracular-amd64-server-20240524.img (UUID bfc0849f-cb68-4883-a64a-ae724e062cdb)...