0s autopkgtest [09:02:20]: starting date and time: 2024-07-08 09:02:20+0000 0s autopkgtest [09:02:20]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [09:02:20]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3_k11_3l/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pandas --apt-upgrade q2-metadata --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pandas/2.2.2+dfsg-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-108.secgroup --name adt-oracular-amd64-q2-metadata-20240708-090220-juju-7f2275-prod-proposed-migration-environment-2-de253f4e-8509-4ade-95b7-a6630699837f --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 395s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 402s autopkgtest [09:09:02]: testbed dpkg architecture: amd64 437s autopkgtest [09:09:16]: testbed apt version: 2.9.6 437s autopkgtest [09:09:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 437s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 437s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [353 kB] 437s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.2 kB] 437s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 437s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 437s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [101 kB] 437s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [74.0 kB] 437s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2592 B] 437s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 437s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 437s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 437s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [345 kB] 437s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [199 kB] 437s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9628 B] 437s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 437s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B] 437s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 437s Fetched 1317 kB in 0s (4382 kB/s) 437s Reading package lists... 495s Reading package lists... 495s Building dependency tree... 495s Reading state information... 495s Calculating upgrade... 496s The following packages will be upgraded: 496s fuse3 libfuse3-3 496s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 496s Need to get 109 kB of archives. 496s After this operation, 4096 B of additional disk space will be used. 496s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 fuse3 amd64 3.14.0-6 [25.5 kB] 496s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libfuse3-3 amd64 3.14.0-6 [83.2 kB] 496s Fetched 109 kB in 0s (3939 kB/s) 496s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74464 files and directories currently installed.) 496s Preparing to unpack .../fuse3_3.14.0-6_amd64.deb ... 496s Adding 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 496s Adding 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 496s Unpacking fuse3 (3.14.0-6) over (3.14.0-5build1) ... 496s Preparing to unpack .../libfuse3-3_3.14.0-6_amd64.deb ... 496s Unpacking libfuse3-3:amd64 (3.14.0-6) over (3.14.0-5build1) ... 497s Setting up libfuse3-3:amd64 (3.14.0-6) ... 497s Setting up fuse3 (3.14.0-6) ... 497s Removing 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 497s Removing 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 497s update-initramfs: deferring update (trigger activated) 497s Processing triggers for libc-bin (2.39-0ubuntu9) ... 497s Processing triggers for man-db (2.12.1-2) ... 498s Processing triggers for initramfs-tools (0.142ubuntu29) ... 498s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 498s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 507s Reading package lists... 507s Building dependency tree... 507s Reading state information... 508s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 508s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 508s Get:2 http://ftpmaster.internal/ubuntu oracular InRelease [121 kB] 508s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 508s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 508s Get:5 http://ftpmaster.internal/ubuntu oracular/universe Sources [20.3 MB] 509s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 Packages [15.8 MB] 509s Get:7 http://ftpmaster.internal/ubuntu oracular/universe i386 Packages [8739 kB] 512s Fetched 44.9 MB in 4s (10.7 MB/s) 513s Reading package lists... 513s Reading package lists... 513s Building dependency tree... 513s Reading state information... 514s Calculating upgrade... 514s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 514s Reading package lists... 514s Building dependency tree... 514s Reading state information... 515s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 539s autopkgtest [09:11:19]: rebooting testbed after setup commands that affected boot 542s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 588s autopkgtest [09:12:08]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 592s autopkgtest [09:12:12]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-metadata 604s Get:1 http://ftpmaster.internal/ubuntu oracular/universe q2-metadata 2024.2.0+dfsg-1ubuntu1 (dsc) [2537 B] 604s Get:2 http://ftpmaster.internal/ubuntu oracular/universe q2-metadata 2024.2.0+dfsg-1ubuntu1 (tar) [229 kB] 604s Get:3 http://ftpmaster.internal/ubuntu oracular/universe q2-metadata 2024.2.0+dfsg-1ubuntu1 (diff) [7860 B] 604s gpgv: Signature made Mon Jun 3 19:45:53 2024 UTC 604s gpgv: using RSA key 439884E6862A429C290DF63B033C4CA276024834 604s gpgv: issuer "athos.ribeiro@canonical.com" 604s gpgv: Can't check signature: No public key 604s dpkg-source: warning: cannot verify inline signature for ./q2-metadata_2024.2.0+dfsg-1ubuntu1.dsc: no acceptable signature found 604s autopkgtest [09:12:24]: testing package q2-metadata version 2024.2.0+dfsg-1ubuntu1 604s autopkgtest [09:12:24]: build not needed 604s autopkgtest [09:12:24]: test run-unit-test: preparing testbed 605s Reading package lists... 605s Building dependency tree... 605s Reading state information... 605s Starting pkgProblemResolver with broken count: 0 605s Starting 2 pkgProblemResolver with broken count: 0 605s Done 606s The following additional packages will be installed: 606s fonts-glyphicons-halflings javascript-common libaec0 libblas3 libgfortran5 606s libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libjs-bootstrap libjs-jquery 606s libjs-jquery-datatables libjs-jquery-hotkeys libjs-jquery-isonscreen 606s libjs-jquery-metadata libjs-jquery-tablesorter 606s libjs-jquery-throttle-debounce libjs-popper.js liblapack3 liblbfgsb0 liblzf1 606s libnorm1t64 libopenblas0 libopenblas0-pthread libpgm-5.3-0t64 libsodium23 606s libssw0 libsz2 libxslt1.1 libyajl2 libzmq5 node-fortawesome-fontawesome-free 606s node-normalize.css python3-all python3-appdirs python3-bcrypt 606s python3-bibtexparser python3-biom-format python3-click python3-colorama 606s python3-coverage python3-dateutil python3-decorator python3-dill 606s python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock 606s python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial 606s python3-hdmedians python3-ijson python3-iniconfig python3-itsdangerous 606s python3-lxml python3-nacl python3-natsort python3-networkx python3-numpy 606s python3-packaging python3-pandas python3-pandas-lib python3-paramiko 606s python3-parsl python3-pluggy python3-psutil python3-public python3-py 606s python3-pytest python3-pytest-cov python3-scipy python3-setproctitle 606s python3-skbio python3-sqlalchemy python3-tblib python3-tomlkit 606s python3-typeguard python3-tzlocal python3-werkzeug python3-zmq q2-metadata 606s q2-quality-filter q2-types q2templates qiime 606s Suggested packages: 606s apache2 | lighttpd | httpd libjs-html5shiv python-biom-format-doc 606s python-coverage-doc python3-objgraph python3-dotenv python-flask-doc 606s python-flufl.lock-doc python-greenlet-dev python-greenlet-doc 606s python-h5py-doc python-lxml-doc python-nacl-doc python-natsort-doc 606s python3-gdal python3-matplotlib python3-pydot python3-pygraphviz gcc 606s gfortran python-numpy-doc python3-dev python-pandas-doc python3-statsmodels 606s python3-gssapi python3-invoke python-public-doc subversion python-scipy-doc 606s python-skbio-doc python-sqlalchemy-doc python3-fdb python3-pymssql 606s python3-mysqldb python3-psycopg2 python3-asyncpg python3-aiosqlite ipython3 606s python-werkzeug-doc python3-watchdog 606s Recommended packages: 606s node-jquery python3-asgiref python3-simplejson python3-bs4 python3-cssselect 606s python3-html5lib python3-matplotlib python3-bottleneck python3-numexpr 606s python3-odf python3-openpyxl python3-tables python3-numba r-cran-plotly g++ 606s | c++-compiler python3-pil python3-sqlalchemy-ext python3-pyinotify q2cli 606s q2-cutadapt q2-demux q2-feature-classifier q2-feature-table 606s The following NEW packages will be installed: 606s autopkgtest-satdep fonts-glyphicons-halflings javascript-common libaec0 606s libblas3 libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 606s libjs-bootstrap libjs-jquery libjs-jquery-datatables libjs-jquery-hotkeys 606s libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter 606s libjs-jquery-throttle-debounce libjs-popper.js liblapack3 liblbfgsb0 liblzf1 606s libnorm1t64 libopenblas0 libopenblas0-pthread libpgm-5.3-0t64 libsodium23 606s libssw0 libsz2 libxslt1.1 libyajl2 libzmq5 node-fortawesome-fontawesome-free 606s node-normalize.css python3-all python3-appdirs python3-bcrypt 606s python3-bibtexparser python3-biom-format python3-click python3-colorama 606s python3-coverage python3-dateutil python3-decorator python3-dill 606s python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock 606s python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial 606s python3-hdmedians python3-ijson python3-iniconfig python3-itsdangerous 606s python3-lxml python3-nacl python3-natsort python3-networkx python3-numpy 606s python3-packaging python3-pandas python3-pandas-lib python3-paramiko 606s python3-parsl python3-pluggy python3-psutil python3-public python3-py 606s python3-pytest python3-pytest-cov python3-scipy python3-setproctitle 606s python3-skbio python3-sqlalchemy python3-tblib python3-tomlkit 606s python3-typeguard python3-tzlocal python3-werkzeug python3-zmq q2-metadata 606s q2-quality-filter q2-types q2templates qiime 606s 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded. 606s Need to get 70.0 MB/70.0 MB of archives. 606s After this operation, 389 MB of additional disk space will be used. 606s Get:1 /tmp/autopkgtest.yPgLfb/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [724 B] 606s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 606s Get:3 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] 606s Get:4 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 606s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 javascript-common all 11+nmu1 [5936 B] 606s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 606s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 606s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 606s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 606s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 606s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 606s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 606s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 606s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 606s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 606s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [193 kB] 606s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 606s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 606s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenblas0-pthread amd64 0.3.27+ds-2 [7185 kB] 607s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 607s Get:21 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 607s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 607s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB] 607s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenblas0 amd64 0.3.27+ds-2 [6218 B] 607s Get:25 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB] 607s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB] 607s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libssw0 amd64 1.1-14build1 [22.1 kB] 607s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 607s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB] 607s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1573 kB] 607s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 607s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 607s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 607s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.5 kB] 607s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 607s Get:36 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB] 607s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 607s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 607s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB] 607s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 607s Get:41 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas-lib amd64 2.2.2+dfsg-4 [4444 kB] 607s Get:42 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas all 2.2.2+dfsg-4 [3111 kB] 607s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 607s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 607s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-biom-format amd64 2.1.16-1 [141 kB] 607s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-coverage amd64 7.4.4+dfsg1-0ubuntu2 [147 kB] 607s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-dill all 0.3.8-1 [83.0 kB] 607s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-filelock all 3.15.4-1 [12.8 kB] 607s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-itsdangerous all 2.2.0-1 [15.2 kB] 607s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-werkzeug all 3.0.3-1 [170 kB] 607s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-flask all 3.0.3-1ubuntu1 [83.2 kB] 607s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-greenlet amd64 3.0.3-0ubuntu5 [154 kB] 607s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-sqlalchemy all 1.4.50+ds1-1build1 [1020 kB] 607s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flask-sqlalchemy all 3.0.3-1 [30.9 kB] 607s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB] 607s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-public all 4.1.0-1 [7052 B] 607s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flufl.lock all 8.1.0-1 [12.4 kB] 607s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-globus-sdk all 3.41.0-1 [225 kB] 607s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-hdmedians amd64 0.14.2-5.1build1 [124 kB] 607s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 607s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 607s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-nacl amd64 1.5.0-4build1 [57.9 kB] 607s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB] 607s Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 607s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 607s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bcrypt amd64 4.1.2-1 [229 kB] 607s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-paramiko all 3.4.0-1ubuntu1 [145 kB] 607s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-setproctitle amd64 1.3.3-1build2 [19.0 kB] 607s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tblib all 3.0.0-5 [12.9 kB] 607s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-typeguard all 4.1.5-1 [32.7 kB] 607s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-py all 1.11.0-2 [72.7 kB] 607s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-zmq amd64 24.0.1-5build1 [286 kB] 607s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-parsl all 2024.05.27+ds-1 [274 kB] 607s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 607s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 607s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 607s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 607s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skbio amd64 0.6.1-2 [1333 kB] 607s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tomlkit all 0.12.5-1 [37.7 kB] 607s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tzlocal all 5.2-1.1 [20.5 kB] 607s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 qiime all 2024.2.0-1ubuntu1 [311 kB] 607s Get:82 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2templates all 2024.5.0+ds-1 [12.0 kB] 607s Get:83 http://ftpmaster.internal/ubuntu oracular/main amd64 libyajl2 amd64 2.1.0-5build1 [20.2 kB] 607s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ijson amd64 3.3.0-1 [36.7 kB] 607s Get:85 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2-types all 2024.2.0-1ubuntu1 [5752 kB] 607s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2-quality-filter all 2024.2.0-1ubuntu1 [23.2 kB] 607s Get:87 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2-metadata amd64 2024.2.0+dfsg-1ubuntu1 [16.7 kB] 607s Fetched 70.0 MB in 1s (98.8 MB/s) 608s Selecting previously unselected package libjs-jquery. 608s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74466 files and directories currently installed.) 608s Preparing to unpack .../00-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 608s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 608s Selecting previously unselected package libjs-jquery-hotkeys. 608s Preparing to unpack .../01-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... 608s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 608s Selecting previously unselected package fonts-glyphicons-halflings. 608s Preparing to unpack .../02-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 608s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 608s Selecting previously unselected package javascript-common. 608s Preparing to unpack .../03-javascript-common_11+nmu1_all.deb ... 608s Unpacking javascript-common (11+nmu1) ... 608s Selecting previously unselected package libaec0:amd64. 608s Preparing to unpack .../04-libaec0_1.1.3-1_amd64.deb ... 608s Unpacking libaec0:amd64 (1.1.3-1) ... 608s Selecting previously unselected package libblas3:amd64. 608s Preparing to unpack .../05-libblas3_3.12.0-3build1_amd64.deb ... 608s Unpacking libblas3:amd64 (3.12.0-3build1) ... 608s Selecting previously unselected package libgfortran5:amd64. 608s Preparing to unpack .../06-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 608s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 608s Selecting previously unselected package libgomp1:amd64. 608s Preparing to unpack .../07-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 608s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 608s Selecting previously unselected package libsz2:amd64. 608s Preparing to unpack .../08-libsz2_1.1.3-1_amd64.deb ... 608s Unpacking libsz2:amd64 (1.1.3-1) ... 608s Selecting previously unselected package libhdf5-103-1t64:amd64. 608s Preparing to unpack .../09-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 608s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 608s Selecting previously unselected package libhdf5-hl-100t64:amd64. 608s Preparing to unpack .../10-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 608s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 608s Selecting previously unselected package libjs-bootstrap. 608s Preparing to unpack .../11-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 608s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 608s Selecting previously unselected package libjs-jquery-datatables. 608s Preparing to unpack .../12-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 608s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 608s Selecting previously unselected package libjs-jquery-metadata. 608s Preparing to unpack .../13-libjs-jquery-metadata_12-4_all.deb ... 608s Unpacking libjs-jquery-metadata (12-4) ... 608s Selecting previously unselected package libjs-jquery-tablesorter. 608s Preparing to unpack .../14-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-3_all.deb ... 608s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... 608s Selecting previously unselected package libjs-jquery-throttle-debounce. 608s Preparing to unpack .../15-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 608s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 608s Selecting previously unselected package libjs-popper.js. 608s Preparing to unpack .../16-libjs-popper.js_1.16.1+ds-6_all.deb ... 608s Unpacking libjs-popper.js (1.16.1+ds-6) ... 608s Selecting previously unselected package libopenblas0-pthread:amd64. 608s Preparing to unpack .../17-libopenblas0-pthread_0.3.27+ds-2_amd64.deb ... 608s Unpacking libopenblas0-pthread:amd64 (0.3.27+ds-2) ... 609s Selecting previously unselected package liblapack3:amd64. 609s Preparing to unpack .../18-liblapack3_3.12.0-3build1_amd64.deb ... 609s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 609s Selecting previously unselected package liblbfgsb0:amd64. 609s Preparing to unpack .../19-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 609s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 609s Selecting previously unselected package liblzf1:amd64. 609s Preparing to unpack .../20-liblzf1_3.6-4_amd64.deb ... 609s Unpacking liblzf1:amd64 (3.6-4) ... 609s Selecting previously unselected package libnorm1t64:amd64. 609s Preparing to unpack .../21-libnorm1t64_1.5.9+dfsg-3.1build1_amd64.deb ... 609s Unpacking libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 609s Selecting previously unselected package libopenblas0:amd64. 609s Preparing to unpack .../22-libopenblas0_0.3.27+ds-2_amd64.deb ... 609s Unpacking libopenblas0:amd64 (0.3.27+ds-2) ... 609s Selecting previously unselected package libpgm-5.3-0t64:amd64. 609s Preparing to unpack .../23-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_amd64.deb ... 609s Unpacking libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 609s Selecting previously unselected package libsodium23:amd64. 609s Preparing to unpack .../24-libsodium23_1.0.18-1build3_amd64.deb ... 609s Unpacking libsodium23:amd64 (1.0.18-1build3) ... 609s Selecting previously unselected package libssw0:amd64. 609s Preparing to unpack .../25-libssw0_1.1-14build1_amd64.deb ... 609s Unpacking libssw0:amd64 (1.1-14build1) ... 609s Selecting previously unselected package libxslt1.1:amd64. 609s Preparing to unpack .../26-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 609s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 609s Selecting previously unselected package libzmq5:amd64. 609s Preparing to unpack .../27-libzmq5_4.3.5-1build2_amd64.deb ... 609s Unpacking libzmq5:amd64 (4.3.5-1build2) ... 609s Selecting previously unselected package node-fortawesome-fontawesome-free. 609s Preparing to unpack .../28-node-fortawesome-fontawesome-free_6.4.2+ds1-1_all.deb ... 609s Unpacking node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 609s Selecting previously unselected package node-normalize.css. 609s Preparing to unpack .../29-node-normalize.css_8.0.1-5_all.deb ... 609s Unpacking node-normalize.css (8.0.1-5) ... 610s Selecting previously unselected package python3-all. 610s Preparing to unpack .../30-python3-all_3.12.3-0ubuntu1_amd64.deb ... 610s Unpacking python3-all (3.12.3-0ubuntu1) ... 610s Selecting previously unselected package python3-appdirs. 610s Preparing to unpack .../31-python3-appdirs_1.4.4-4_all.deb ... 610s Unpacking python3-appdirs (1.4.4-4) ... 610s Selecting previously unselected package python3-bibtexparser. 610s Preparing to unpack .../32-python3-bibtexparser_2.0.0b5+really1.4.1-1_all.deb ... 610s Unpacking python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 610s Selecting previously unselected package python3-numpy. 610s Preparing to unpack .../33-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 610s Unpacking python3-numpy (1:1.26.4+ds-10) ... 610s Selecting previously unselected package python3-h5py-serial. 610s Preparing to unpack .../34-python3-h5py-serial_3.10.0-1ubuntu3_amd64.deb ... 610s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 610s Selecting previously unselected package python3-h5py. 610s Preparing to unpack .../35-python3-h5py_3.10.0-1ubuntu3_all.deb ... 610s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 610s Selecting previously unselected package python3-colorama. 610s Preparing to unpack .../36-python3-colorama_0.4.6-4_all.deb ... 610s Unpacking python3-colorama (0.4.6-4) ... 610s Selecting previously unselected package python3-click. 610s Preparing to unpack .../37-python3-click_8.1.7-1_all.deb ... 610s Unpacking python3-click (8.1.7-1) ... 610s Selecting previously unselected package python3-dateutil. 610s Preparing to unpack .../38-python3-dateutil_2.9.0-2_all.deb ... 610s Unpacking python3-dateutil (2.9.0-2) ... 610s Selecting previously unselected package python3-pandas-lib:amd64. 610s Preparing to unpack .../39-python3-pandas-lib_2.2.2+dfsg-4_amd64.deb ... 610s Unpacking python3-pandas-lib:amd64 (2.2.2+dfsg-4) ... 610s Selecting previously unselected package python3-pandas. 610s Preparing to unpack .../40-python3-pandas_2.2.2+dfsg-4_all.deb ... 610s Unpacking python3-pandas (2.2.2+dfsg-4) ... 610s Selecting previously unselected package python3-decorator. 611s Preparing to unpack .../41-python3-decorator_5.1.1-5_all.deb ... 611s Unpacking python3-decorator (5.1.1-5) ... 611s Selecting previously unselected package python3-scipy. 611s Preparing to unpack .../42-python3-scipy_1.12.0-2_amd64.deb ... 611s Unpacking python3-scipy (1.12.0-2) ... 611s Selecting previously unselected package python3-biom-format. 611s Preparing to unpack .../43-python3-biom-format_2.1.16-1_amd64.deb ... 611s Unpacking python3-biom-format (2.1.16-1) ... 611s Selecting previously unselected package python3-coverage. 611s Preparing to unpack .../44-python3-coverage_7.4.4+dfsg1-0ubuntu2_amd64.deb ... 611s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu2) ... 611s Selecting previously unselected package python3-dill. 611s Preparing to unpack .../45-python3-dill_0.3.8-1_all.deb ... 611s Unpacking python3-dill (0.3.8-1) ... 611s Selecting previously unselected package python3-filelock. 611s Preparing to unpack .../46-python3-filelock_3.15.4-1_all.deb ... 611s Unpacking python3-filelock (3.15.4-1) ... 611s Selecting previously unselected package python3-itsdangerous. 611s Preparing to unpack .../47-python3-itsdangerous_2.2.0-1_all.deb ... 611s Unpacking python3-itsdangerous (2.2.0-1) ... 611s Selecting previously unselected package python3-werkzeug. 611s Preparing to unpack .../48-python3-werkzeug_3.0.3-1_all.deb ... 611s Unpacking python3-werkzeug (3.0.3-1) ... 611s Selecting previously unselected package python3-flask. 611s Preparing to unpack .../49-python3-flask_3.0.3-1ubuntu1_all.deb ... 611s Unpacking python3-flask (3.0.3-1ubuntu1) ... 611s Selecting previously unselected package python3-greenlet. 611s Preparing to unpack .../50-python3-greenlet_3.0.3-0ubuntu5_amd64.deb ... 611s Unpacking python3-greenlet (3.0.3-0ubuntu5) ... 611s Selecting previously unselected package python3-sqlalchemy. 611s Preparing to unpack .../51-python3-sqlalchemy_1.4.50+ds1-1build1_all.deb ... 611s Unpacking python3-sqlalchemy (1.4.50+ds1-1build1) ... 611s Selecting previously unselected package python3-flask-sqlalchemy. 611s Preparing to unpack .../52-python3-flask-sqlalchemy_3.0.3-1_all.deb ... 611s Unpacking python3-flask-sqlalchemy (3.0.3-1) ... 611s Selecting previously unselected package python3-psutil. 611s Preparing to unpack .../53-python3-psutil_5.9.8-2build2_amd64.deb ... 611s Unpacking python3-psutil (5.9.8-2build2) ... 612s Selecting previously unselected package python3-public. 612s Preparing to unpack .../54-python3-public_4.1.0-1_all.deb ... 612s Unpacking python3-public (4.1.0-1) ... 612s Selecting previously unselected package python3-flufl.lock. 612s Preparing to unpack .../55-python3-flufl.lock_8.1.0-1_all.deb ... 612s Unpacking python3-flufl.lock (8.1.0-1) ... 612s Selecting previously unselected package python3-globus-sdk. 612s Preparing to unpack .../56-python3-globus-sdk_3.41.0-1_all.deb ... 612s Unpacking python3-globus-sdk (3.41.0-1) ... 612s Selecting previously unselected package python3-hdmedians. 612s Preparing to unpack .../57-python3-hdmedians_0.14.2-5.1build1_amd64.deb ... 612s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 612s Selecting previously unselected package python3-iniconfig. 612s Preparing to unpack .../58-python3-iniconfig_1.1.1-2_all.deb ... 612s Unpacking python3-iniconfig (1.1.1-2) ... 612s Selecting previously unselected package python3-lxml:amd64. 612s Preparing to unpack .../59-python3-lxml_5.2.1-1_amd64.deb ... 612s Unpacking python3-lxml:amd64 (5.2.1-1) ... 612s Selecting previously unselected package python3-nacl. 612s Preparing to unpack .../60-python3-nacl_1.5.0-4build1_amd64.deb ... 612s Unpacking python3-nacl (1.5.0-4build1) ... 612s Selecting previously unselected package python3-natsort. 612s Preparing to unpack .../61-python3-natsort_8.0.2-2_all.deb ... 612s Unpacking python3-natsort (8.0.2-2) ... 612s Selecting previously unselected package python3-networkx. 612s Preparing to unpack .../62-python3-networkx_3.2.1-4ubuntu1_all.deb ... 612s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 613s Selecting previously unselected package python3-packaging. 613s Preparing to unpack .../63-python3-packaging_24.0-1_all.deb ... 613s Unpacking python3-packaging (24.0-1) ... 613s Selecting previously unselected package python3-bcrypt. 613s Preparing to unpack .../64-python3-bcrypt_4.1.2-1_amd64.deb ... 613s Unpacking python3-bcrypt (4.1.2-1) ... 613s Selecting previously unselected package python3-paramiko. 613s Preparing to unpack .../65-python3-paramiko_3.4.0-1ubuntu1_all.deb ... 613s Unpacking python3-paramiko (3.4.0-1ubuntu1) ... 613s Selecting previously unselected package python3-setproctitle:amd64. 613s Preparing to unpack .../66-python3-setproctitle_1.3.3-1build2_amd64.deb ... 613s Unpacking python3-setproctitle:amd64 (1.3.3-1build2) ... 613s Selecting previously unselected package python3-tblib. 613s Preparing to unpack .../67-python3-tblib_3.0.0-5_all.deb ... 613s Unpacking python3-tblib (3.0.0-5) ... 613s Selecting previously unselected package python3-typeguard. 613s Preparing to unpack .../68-python3-typeguard_4.1.5-1_all.deb ... 613s Unpacking python3-typeguard (4.1.5-1) ... 613s Selecting previously unselected package python3-py. 613s Preparing to unpack .../69-python3-py_1.11.0-2_all.deb ... 613s Unpacking python3-py (1.11.0-2) ... 613s Selecting previously unselected package python3-zmq. 613s Preparing to unpack .../70-python3-zmq_24.0.1-5build1_amd64.deb ... 613s Unpacking python3-zmq (24.0.1-5build1) ... 613s Selecting previously unselected package python3-parsl. 613s Preparing to unpack .../71-python3-parsl_2024.05.27+ds-1_all.deb ... 613s Unpacking python3-parsl (2024.05.27+ds-1) ... 613s Selecting previously unselected package python3-pluggy. 613s Preparing to unpack .../72-python3-pluggy_1.5.0-1_all.deb ... 613s Unpacking python3-pluggy (1.5.0-1) ... 613s Selecting previously unselected package python3-pytest. 613s Preparing to unpack .../73-python3-pytest_7.4.4-1_all.deb ... 613s Unpacking python3-pytest (7.4.4-1) ... 613s Selecting previously unselected package libjs-jquery-isonscreen. 613s Preparing to unpack .../74-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ... 613s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ... 613s Selecting previously unselected package python3-pytest-cov. 613s Preparing to unpack .../75-python3-pytest-cov_5.0.0-1_all.deb ... 613s Unpacking python3-pytest-cov (5.0.0-1) ... 613s Selecting previously unselected package python3-skbio. 613s Preparing to unpack .../76-python3-skbio_0.6.1-2_amd64.deb ... 613s Unpacking python3-skbio (0.6.1-2) ... 613s Selecting previously unselected package python3-tomlkit. 613s Preparing to unpack .../77-python3-tomlkit_0.12.5-1_all.deb ... 613s Unpacking python3-tomlkit (0.12.5-1) ... 613s Selecting previously unselected package python3-tzlocal. 613s Preparing to unpack .../78-python3-tzlocal_5.2-1.1_all.deb ... 613s Unpacking python3-tzlocal (5.2-1.1) ... 613s Selecting previously unselected package qiime. 613s Preparing to unpack .../79-qiime_2024.2.0-1ubuntu1_all.deb ... 613s Unpacking qiime (2024.2.0-1ubuntu1) ... 614s Selecting previously unselected package q2templates. 614s Preparing to unpack .../80-q2templates_2024.5.0+ds-1_all.deb ... 614s Unpacking q2templates (2024.5.0+ds-1) ... 614s Selecting previously unselected package libyajl2:amd64. 614s Preparing to unpack .../81-libyajl2_2.1.0-5build1_amd64.deb ... 614s Unpacking libyajl2:amd64 (2.1.0-5build1) ... 614s Selecting previously unselected package python3-ijson. 614s Preparing to unpack .../82-python3-ijson_3.3.0-1_amd64.deb ... 614s Unpacking python3-ijson (3.3.0-1) ... 614s Selecting previously unselected package q2-types. 614s Preparing to unpack .../83-q2-types_2024.2.0-1ubuntu1_all.deb ... 614s Unpacking q2-types (2024.2.0-1ubuntu1) ... 614s Selecting previously unselected package q2-quality-filter. 614s Preparing to unpack .../84-q2-quality-filter_2024.2.0-1ubuntu1_all.deb ... 614s Unpacking q2-quality-filter (2024.2.0-1ubuntu1) ... 614s Selecting previously unselected package q2-metadata. 614s Preparing to unpack .../85-q2-metadata_2024.2.0+dfsg-1ubuntu1_amd64.deb ... 614s Unpacking q2-metadata (2024.2.0+dfsg-1ubuntu1) ... 614s Selecting previously unselected package autopkgtest-satdep. 614s 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node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 616s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 616s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 616s Setting up python3-click (8.1.7-1) ... 616s Setting up python3-networkx (3.2.1-4ubuntu1) ... 617s Setting up libaec0:amd64 (1.1.3-1) ... 617s Setting up python3-psutil (5.9.8-2build2) ... 618s Setting up python3-natsort (8.0.2-2) ... 618s Setting up python3-flufl.lock (8.1.0-1) ... 618s Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 618s Setting up python3-decorator (5.1.1-5) ... 618s Setting up libblas3:amd64 (3.12.0-3build1) ... 618s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 618s Setting up python3-packaging (24.0-1) ... 618s Setting up python3-dill (0.3.8-1) ... 618s Setting up liblzf1:amd64 (3.6-4) ... 618s Setting up python3-greenlet (3.0.3-0ubuntu5) ... 619s Setting up python3-setproctitle:amd64 (1.3.3-1build2) ... 619s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 619s Setting up python3-pluggy (1.5.0-1) ... 619s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 619s Setting up python3-dateutil (2.9.0-2) ... 619s Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 619s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' 619s string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) 619s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 619s Setting up python3-tzlocal (5.2-1.1) ... 619s Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 619s Setting up python3-tomlkit (0.12.5-1) ... 619s Setting up node-normalize.css (8.0.1-5) ... 619s Setting up python3-appdirs (1.4.4-4) ... 620s Setting up libssw0:amd64 (1.1-14build1) ... 620s Setting up python3-nacl (1.5.0-4build1) ... 620s Setting up python3-globus-sdk (3.41.0-1) ... 620s Setting up libsz2:amd64 (1.1.3-1) ... 620s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 620s Setting up liblapack3:amd64 (3.12.0-3build1) ... 620s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 620s Setting up libopenblas0-pthread:amd64 (0.3.27+ds-2) ... 620s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 620s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 620s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode 620s Setting up libzmq5:amd64 (4.3.5-1build2) ... 620s Setting up python3-ijson (3.3.0-1) ... 620s Setting up python3-pytest (7.4.4-1) ... 621s Setting up python3-sqlalchemy (1.4.50+ds1-1build1) ... 622s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 622s Setting up python3-werkzeug (3.0.3-1) ... 622s Setting up python3-zmq (24.0.1-5build1) ... 622s Setting up libjs-jquery-metadata (12-4) ... 622s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... 622s Setting up python3-numpy (1:1.26.4+ds-10) ... 625s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... 625s Setting up python3-hdmedians (0.14.2-5.1build1) ... 625s Setting up libopenblas0:amd64 (0.3.27+ds-2) ... 625s Setting up python3-lxml:amd64 (5.2.1-1) ... 625s Setting up python3-paramiko (3.4.0-1ubuntu1) ... 625s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 625s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 625s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 625s Setting up python3-scipy (1.12.0-2) ... 629s Setting up python3-flask 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autopkgtest-satdep (0) ... 651s autopkgtest [09:13:11]: test run-unit-test: [----------------------- 652s ============================= test session starts ============================== 652s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 652s cachedir: .pytest_cache 652s rootdir: /tmp/autopkgtest.yPgLfb/autopkgtest_tmp 652s plugins: cov-5.0.0, typeguard-4.1.5 661s collecting ... collected 25 items 661s 661s q2_metadata/tests/test_distance.py::DistanceMatrixTests::test_float_column PASSED [ 4%] 661s q2_metadata/tests/test_distance.py::DistanceMatrixTests::test_int_column PASSED [ 8%] 661s q2_metadata/tests/test_distance.py::DistanceMatrixTests::test_missing_values PASSED [ 12%] 661s q2_metadata/tests/test_distance.py::DistanceMatrixTests::test_one_sample PASSED [ 16%] 661s q2_metadata/tests/test_merge.py::MergeTests::test_merge_all_columns_overlapping PASSED [ 20%] 661s q2_metadata/tests/test_merge.py::MergeTests::test_merge_all_samples_overlapping PASSED [ 24%] 661s q2_metadata/tests/test_merge.py::MergeTests::test_merge_no_samples_or_columns_overlapping PASSED [ 28%] 661s q2_metadata/tests/test_merge.py::MergeTests::test_merge_overlapping_samples_and_columns_errors PASSED [ 32%] 662s q2_metadata/tests/test_merge.py::MergeTests::test_merge_some_columns_overlapping PASSED [ 36%] 662s q2_metadata/tests/test_merge.py::MergeTests::test_merge_some_samples_overlapping PASSED [ 40%] 662s q2_metadata/tests/test_plugin_setup.py::PluginTests::test_plugin PASSED [ 44%] 662s q2_metadata/tests/test_random.py::ShuffleGroupsTests::test_shuffle_groups_alt_column_name_prefix PASSED [ 48%] 662s q2_metadata/tests/test_random.py::ShuffleGroupsTests::test_shuffle_groups_alt_column_value_prefix PASSED [ 52%] 662s q2_metadata/tests/test_random.py::ShuffleGroupsTests::test_shuffle_groups_alt_input_column_name PASSED [ 56%] 662s q2_metadata/tests/test_random.py::ShuffleGroupsTests::test_shuffle_groups_sample_size_column_id_flag_false PASSED [ 60%] 662s q2_metadata/tests/test_random.py::ShuffleGroupsTests::test_shuffle_groups_sample_size_column_id_flag_no_input PASSED [ 64%] 662s q2_metadata/tests/test_random.py::ShuffleGroupsTests::test_shuffle_groups_sample_size_column_id_flag_true PASSED [ 68%] 662s q2_metadata/tests/test_random.py::ShuffleGroupsTests::test_shuffle_groups_sample_size_equals_value_counts PASSED [ 72%] 662s q2_metadata/tests/test_random.py::ShuffleGroupsTests::test_shuffle_groups_shape_33 PASSED [ 76%] 663s q2_metadata/tests/test_random.py::ShuffleGroupsTests::test_shuffle_groups_shape_41 PASSED [ 80%] 663s q2_metadata/tests/test_tabulate.py::TabulateTests::test_invalid_pagination PASSED [ 84%] 663s q2_metadata/tests/test_tabulate.py::TabulateTests::test_multiple_dtypes PASSED [ 88%] 663s q2_metadata/tests/test_tabulate.py::TabulateTests::test_pagination PASSED [ 92%] 663s q2_metadata/tests/test_tabulate.py::TabulateTests::test_valid_metadata PASSED [ 96%] 663s q2_metadata/tests/test_tabulate.py::TabulateTests::test_valid_metadata_many_columns PASSED [100%] 663s 663s =============================== warnings summary =============================== 663s q2_metadata/_tabulate.py:10 663s /tmp/autopkgtest.yPgLfb/autopkgtest_tmp/q2_metadata/_tabulate.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 663s import pkg_resources 663s 663s q2_metadata/tests/test_merge.py: 86 warnings 663s q2_metadata/tests/test_random.py: 9 warnings 663s q2_metadata/tests/test_tabulate.py: 7 warnings 663s /usr/lib/python3/dist-packages/qiime2/metadata/metadata.py:1289: FutureWarning: the convert_dtype parameter is deprecated and will be removed in a future version. Do ``ser.astype(object).apply()`` instead if you want ``convert_dtype=False``. 663s norm_series = series.apply(normalize, convert_dtype=False) 663s 663s q2_metadata/tests/test_tabulate.py::TabulateTests::test_multiple_dtypes 663s q2_metadata/tests/test_tabulate.py::TabulateTests::test_pagination 663s q2_metadata/tests/test_tabulate.py::TabulateTests::test_valid_metadata 663s q2_metadata/tests/test_tabulate.py::TabulateTests::test_valid_metadata_many_columns 663s /usr/lib/python3/dist-packages/qiime2/metadata/io.py:418: FutureWarning: DataFrame.applymap has been deprecated. Use DataFrame.map instead. 663s df = df.applymap(self._format) 663s 663s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 663s 663s ---------- coverage: platform linux, python 3.12.4-final-0 ----------- 663s Name Stmts Miss Cover 663s ------------------------------------------------------------ 663s q2_metadata/__init__.py 8 0 100% 663s q2_metadata/_distance.py 11 0 100% 663s q2_metadata/_merge.py 18 0 100% 663s q2_metadata/_random.py 20 0 100% 663s q2_metadata/_tabulate.py 24 0 100% 663s q2_metadata/_version.py 4 0 100% 663s q2_metadata/plugin_setup.py 37 14 62% 663s q2_metadata/tests/__init__.py 0 0 100% 663s q2_metadata/tests/test_distance.py 28 1 96% 663s q2_metadata/tests/test_merge.py 80 0 100% 663s q2_metadata/tests/test_plugin_setup.py 7 1 86% 663s q2_metadata/tests/test_random.py 81 0 100% 663s q2_metadata/tests/test_tabulate.py 65 1 98% 663s ------------------------------------------------------------ 663s TOTAL 383 17 96% 663s 663s ====================== 25 passed, 107 warnings in 11.66s ======================= 664s autopkgtest [09:13:24]: test run-unit-test: -----------------------] 664s autopkgtest [09:13:24]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 664s run-unit-test PASS 665s autopkgtest [09:13:25]: @@@@@@@@@@@@@@@@@@@@ summary 665s run-unit-test PASS 673s nova [W] Skipping flock for amd64 673s Creating nova instance adt-oracular-amd64-q2-metadata-20240708-090220-juju-7f2275-prod-proposed-migration-environment-2-de253f4e-8509-4ade-95b7-a6630699837f from image adt/ubuntu-oracular-amd64-server-20240707.img (UUID a564d08f-b120-4297-9fe1-fa5551c3a09b)...