0s autopkgtest [01:44:29]: starting date and time: 2024-07-21 01:44:29+0000 0s autopkgtest [01:44:29]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [01:44:29]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lorvnick/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.4-1 python3-stdlib-extensions/3.12.4-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-77.secgroup --name adt-oracular-amd64-python-pot-20240721-014420-juju-7f2275-prod-proposed-migration-environment-3-e5a814c1-73ea-447d-91b7-d1c7a0b879ce --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 333s autopkgtest [01:50:02]: testbed dpkg architecture: amd64 333s autopkgtest [01:50:02]: testbed apt version: 2.9.6 333s autopkgtest [01:50:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 334s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 334s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [62.2 kB] 334s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4724 B] 334s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 334s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [410 kB] 334s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [121 kB] 334s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [87.3 kB] 334s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 334s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 334s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 334s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 334s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [535 kB] 334s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [358 kB] 334s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 334s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [8896 B] 334s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3340 B] 334s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 336s Fetched 1780 kB in 0s (6131 kB/s) 336s Reading package lists... 337s Reading package lists... 338s Building dependency tree... 338s Reading state information... 338s Calculating upgrade... 338s The following packages will be upgraded: 338s libbpf1 libheif-plugin-aomdec libheif-plugin-aomenc libheif-plugin-libde265 338s libheif1 libpython3-stdlib python3 python3-gdbm python3-minimal 338s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 338s Need to get 560 kB of archives. 338s After this operation, 30.7 kB of additional disk space will be used. 338s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-minimal amd64 3.12.4-1 [27.1 kB] 338s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3 amd64 3.12.4-1 [24.0 kB] 338s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpython3-stdlib amd64 3.12.4-1 [9818 B] 338s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libbpf1 amd64 1:1.4.5-1 [172 kB] 338s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-gdbm amd64 3.12.4-2 [18.2 kB] 338s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-aomdec amd64 1.17.6-4build1 [10.3 kB] 338s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-aomenc amd64 1.17.6-4build1 [14.8 kB] 338s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif1 amd64 1.17.6-4build1 [276 kB] 338s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-libde265 amd64 1.17.6-4build1 [8328 B] 339s Fetched 560 kB in 0s (25.7 MB/s) 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 339s Preparing to unpack .../python3-minimal_3.12.4-1_amd64.deb ... 339s Unpacking python3-minimal (3.12.4-1) over (3.12.3-0ubuntu1) ... 339s Setting up python3-minimal (3.12.4-1) ... 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 339s Preparing to unpack .../0-python3_3.12.4-1_amd64.deb ... 339s Unpacking python3 (3.12.4-1) over (3.12.3-0ubuntu1) ... 339s Preparing to unpack .../1-libpython3-stdlib_3.12.4-1_amd64.deb ... 339s Unpacking libpython3-stdlib:amd64 (3.12.4-1) over (3.12.3-0ubuntu1) ... 339s Preparing to unpack .../2-libbpf1_1%3a1.4.5-1_amd64.deb ... 339s Unpacking libbpf1:amd64 (1:1.4.5-1) over (1:1.4.3-1) ... 339s Preparing to unpack .../3-python3-gdbm_3.12.4-2_amd64.deb ... 339s Unpacking python3-gdbm:amd64 (3.12.4-2) over (3.12.3-0ubuntu1) ... 339s Preparing to unpack .../4-libheif-plugin-aomdec_1.17.6-4build1_amd64.deb ... 339s Unpacking libheif-plugin-aomdec:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 339s Preparing to unpack .../5-libheif-plugin-aomenc_1.17.6-4build1_amd64.deb ... 339s Unpacking libheif-plugin-aomenc:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 339s Preparing to unpack .../6-libheif1_1.17.6-4build1_amd64.deb ... 339s Unpacking libheif1:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 339s Preparing to unpack .../7-libheif-plugin-libde265_1.17.6-4build1_amd64.deb ... 339s Unpacking libheif-plugin-libde265:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 339s Setting up libbpf1:amd64 (1:1.4.5-1) ... 339s Setting up libpython3-stdlib:amd64 (3.12.4-1) ... 339s Setting up python3 (3.12.4-1) ... 340s Setting up python3-gdbm:amd64 (3.12.4-2) ... 340s Setting up libheif-plugin-aomdec:amd64 (1.17.6-4build1) ... 340s Setting up libheif1:amd64 (1.17.6-4build1) ... 340s Setting up libheif-plugin-libde265:amd64 (1.17.6-4build1) ... 340s Setting up libheif-plugin-aomenc:amd64 (1.17.6-4build1) ... 340s Processing triggers for libc-bin (2.39-0ubuntu9) ... 340s Processing triggers for man-db (2.12.1-2) ... 341s Reading package lists... 341s Building dependency tree... 341s Reading state information... 341s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 341s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 341s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 341s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 341s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 342s Reading package lists... 343s Reading package lists... 343s Building dependency tree... 343s Reading state information... 343s Calculating upgrade... 343s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 343s Reading package lists... 344s Building dependency tree... 344s Reading state information... 344s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 345s autopkgtest [01:50:14]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 345s autopkgtest [01:50:14]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 345s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (dsc) [2114 B] 345s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (tar) [877 kB] 345s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (diff) [4524 B] 346s gpgv: Signature made Thu Apr 18 12:47:08 2024 UTC 346s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 346s gpgv: issuer "gspr@nonempty.org" 346s gpgv: Can't check signature: No public key 346s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.3+dfsg-2.dsc: no acceptable signature found 346s autopkgtest [01:50:15]: testing package python-pot version 0.9.3+dfsg-2 346s autopkgtest [01:50:15]: build not needed 346s autopkgtest [01:50:15]: test upstream.sh: preparing testbed 346s Reading package lists... 347s Building dependency tree... 347s Reading state information... 347s Starting pkgProblemResolver with broken count: 0 347s Starting 2 pkgProblemResolver with broken count: 0 347s Done 347s The following additional packages will be installed: 347s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 347s python3-decorator python3-iniconfig python3-joblib python3-numpy 347s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 347s python3-sklearn python3-sklearn-lib python3-threadpoolctl 347s Suggested packages: 347s gcc gfortran python-numpy-doc python3-dev python-scipy-doc python3-dap 347s python-sklearn-doc ipython3 347s Recommended packages: 347s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 347s python3-matplotlib 347s The following NEW packages will be installed: 347s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 347s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 347s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 347s python3-sklearn python3-sklearn-lib python3-threadpoolctl 347s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 347s Need to get 31.8 MB/31.8 MB of archives. 347s After this operation, 142 MB of additional disk space will be used. 347s Get:1 /tmp/autopkgtest.sMPTfg/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [728 B] 347s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 347s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-4ubuntu2 [909 kB] 347s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-4ubuntu2 [148 kB] 347s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 347s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 347s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-all amd64 3.12.4-1 [882 B] 347s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 347s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 347s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-joblib all 1.3.2-2 [208 kB] 347s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 347s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.1-1 [41.4 kB] 347s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 347s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 348s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pot amd64 0.9.3+dfsg-2 [212 kB] 348s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 348s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 348s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-3 [3786 kB] 348s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 348s Fetched 31.8 MB in 0s (95.1 MB/s) 348s Selecting previously unselected package libblas3:amd64. 348s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74490 files and directories currently installed.) 348s Preparing to unpack .../00-libblas3_3.12.0-3build1_amd64.deb ... 348s Unpacking libblas3:amd64 (3.12.0-3build1) ... 348s Selecting previously unselected package libgfortran5:amd64. 348s Preparing to unpack .../01-libgfortran5_14.1.0-4ubuntu2_amd64.deb ... 348s Unpacking libgfortran5:amd64 (14.1.0-4ubuntu2) ... 348s Selecting previously unselected package libgomp1:amd64. 348s Preparing to unpack .../02-libgomp1_14.1.0-4ubuntu2_amd64.deb ... 348s Unpacking libgomp1:amd64 (14.1.0-4ubuntu2) ... 348s Selecting previously unselected package liblapack3:amd64. 348s Preparing to unpack .../03-liblapack3_3.12.0-3build1_amd64.deb ... 348s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 348s Selecting previously unselected package liblbfgsb0:amd64. 348s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 348s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 348s Selecting previously unselected package python3-all. 348s Preparing to unpack .../05-python3-all_3.12.4-1_amd64.deb ... 348s Unpacking python3-all (3.12.4-1) ... 348s Selecting previously unselected package python3-decorator. 348s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 348s Unpacking python3-decorator (5.1.1-5) ... 348s Selecting previously unselected package python3-iniconfig. 348s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 348s Unpacking python3-iniconfig (1.1.1-2) ... 348s Selecting previously unselected package python3-joblib. 348s Preparing to unpack .../08-python3-joblib_1.3.2-2_all.deb ... 348s Unpacking python3-joblib (1.3.2-2) ... 348s Selecting previously unselected package python3-numpy. 348s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 348s Unpacking python3-numpy (1:1.26.4+ds-10) ... 349s Selecting previously unselected package python3-packaging. 349s Preparing to unpack .../10-python3-packaging_24.1-1_all.deb ... 349s Unpacking python3-packaging (24.1-1) ... 349s Selecting previously unselected package python3-pluggy. 349s Preparing to unpack .../11-python3-pluggy_1.5.0-1_all.deb ... 349s Unpacking python3-pluggy (1.5.0-1) ... 349s Selecting previously unselected package python3-scipy. 349s Preparing to unpack .../12-python3-scipy_1.12.0-2_amd64.deb ... 349s Unpacking python3-scipy (1.12.0-2) ... 349s Selecting previously unselected package python3-pot. 349s Preparing to unpack .../13-python3-pot_0.9.3+dfsg-2_amd64.deb ... 349s Unpacking python3-pot (0.9.3+dfsg-2) ... 349s Selecting previously unselected package python3-pytest. 349s Preparing to unpack .../14-python3-pytest_7.4.4-1_all.deb ... 349s Unpacking python3-pytest (7.4.4-1) ... 349s Selecting previously unselected package python3-threadpoolctl. 349s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 349s Unpacking python3-threadpoolctl (3.1.0-1) ... 349s Selecting previously unselected package python3-sklearn-lib:amd64. 349s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-3_amd64.deb ... 349s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-3) ... 349s Selecting previously unselected package python3-sklearn. 349s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-3_all.deb ... 349s Unpacking python3-sklearn (1.4.2+dfsg-3) ... 349s Selecting previously unselected package autopkgtest-satdep. 349s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 349s Unpacking autopkgtest-satdep (0) ... 349s Setting up python3-iniconfig (1.1.1-2) ... 350s Setting up python3-joblib (1.3.2-2) ... 350s Setting up python3-threadpoolctl (3.1.0-1) ... 350s Setting up python3-all (3.12.4-1) ... 350s Setting up libgomp1:amd64 (14.1.0-4ubuntu2) ... 350s Setting up python3-decorator (5.1.1-5) ... 350s Setting up libblas3:amd64 (3.12.0-3build1) ... 350s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 350s Setting up python3-packaging (24.1-1) ... 350s Setting up libgfortran5:amd64 (14.1.0-4ubuntu2) ... 350s Setting up python3-pluggy (1.5.0-1) ... 350s Setting up liblapack3:amd64 (3.12.0-3build1) ... 350s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 350s Setting up python3-pytest (7.4.4-1) ... 351s Setting up python3-numpy (1:1.26.4+ds-10) ... 352s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 352s Setting up python3-scipy (1.12.0-2) ... 356s Setting up python3-pot (0.9.3+dfsg-2) ... 356s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:62: SyntaxWarning: invalid escape sequence '\o' 356s """ 356s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:189: SyntaxWarning: invalid escape sequence '\o' 356s """ 356s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-3) ... 356s Setting up python3-sklearn (1.4.2+dfsg-3) ... 358s Setting up autopkgtest-satdep (0) ... 358s Processing triggers for man-db (2.12.1-2) ... 358s Processing triggers for libc-bin (2.39-0ubuntu9) ... 360s (Reading database ... 78080 files and directories currently installed.) 360s Removing autopkgtest-satdep (0) ... 360s autopkgtest [01:50:29]: test upstream.sh: [----------------------- 360s Running tests with Python 3.12. 362s ============================= test session starts ============================== 362s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 362s rootdir: /tmp/autopkgtest.sMPTfg/autopkgtest_tmp 362s collected 586 items 362s 362s test/test_1d_solver.py ...s..s...... [ 2%] 362s test/test_backend.py .......... [ 3%] 366s test/test_bregman.py ......................................sss.......... [ 12%] 372s .....................................ss....ss..ss..s....... [ 22%] 373s test/test_coot.py ......... [ 24%] 374s test/test_da.py .....................s.. [ 28%] 374s test/test_dmmot.py .. [ 28%] 374s test/test_dr.py ssssss [ 29%] 374s test/test_factored.py .. [ 30%] 379s test/test_gaussian.py .................. [ 33%] 379s test/test_gnn.py ssss [ 33%] 389s test/test_gromov.py ....s....x..x..x.............................x...... [ 42%] 389s .. [ 43%] 392s test/test_lowrank.py ........... [ 44%] 392s test/test_mapping.py sss. [ 45%] 393s test/test_optim.py ...... [ 46%] 393s test/test_ot.py ....s..........s.. [ 49%] 395s test/test_partial.py ...... [ 50%] 395s test/test_plot.py ss [ 51%] 396s test/test_regpath.py .. [ 51%] 396s test/test_sliced.py ...........s..s............. [ 56%] 396s test/test_smooth.py ... [ 56%] 399s test/test_solvers.py ........................s.....s.....s.............. [ 65%] 401s ............ssssssss........ssssssss........................ssssssss.... [ 77%] 405s ....ssssssss...ss............. [ 82%] 408s test/test_stochastic.py ......... [ 84%] 411s test/test_unbalanced.py ................................................ [ 92%] 421s ................ [ 95%] 421s test/test_utils.py .......................... [ 99%] 422s test/test_weak.py .. [100%] 422s 422s =============================== warnings summary =============================== 422s test/test_bregman.py: 6 warnings 422s test/test_coot.py: 1 warning 422s test/test_da.py: 2 warnings 422s test/test_gromov.py: 13 warnings 422s test/test_optim.py: 1 warning 422s test/test_partial.py: 1 warning 422s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 422s warnings.warn("Sinkhorn did not converge. You might want to " 422s 422s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 422s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 422s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 422s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 422s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 422s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 422s test/test_bregman.py::test_sinkhorn_warmstart 422s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 422s warnings.warn("Sinkhorn did not converge. You might want to " 422s 422s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 422s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 422s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 422s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 422s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 422s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 422s warnings.warn("Sinkhorn did not converge. You might want to " 422s 422s test/test_bregman.py::test_sinkhorn_empty 422s test/test_bregman.py::test_sinkhorn_variants[numpy] 422s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 422s test/test_bregman.py::test_sinkhorn_variants_log 422s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 422s warnings.warn("Sinkhorn did not converge. You might want to " 422s 422s test/test_coot.py::test_coot[numpy-False] 422s test/test_coot.py::test_coot[numpy-True] 422s test/test_coot.py::test_coot[numpy-1] 422s test/test_coot.py::test_coot[numpy-0] 422s test/test_coot.py::test_coot_warmstart[numpy] 422s test/test_coot.py::test_coot_log[numpy] 422s /usr/lib/python3/dist-packages/ot/lp/__init__.py:354: UserWarning: numItermax reached before optimality. Try to increase numItermax. 422s result_code_string = check_result(result_code) 422s 422s test/test_da.py::test_jcpot_transport_class[numpy] 422s /usr/lib/python3/dist-packages/ot/bregman/_barycenter.py:909: UserWarning: Algorithm did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 422s warnings.warn("Algorithm did not converge. You might want to " 422s 422s test/test_gromov.py::test_gromov_integer_warnings[numpy] 422s /tmp/autopkgtest.sMPTfg/autopkgtest_tmp/test/test_gromov.py:145: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 422s G = ot.gromov.gromov_wasserstein( 422s 422s test/test_gromov.py::test_gromov_integer_warnings[numpy] 422s /tmp/autopkgtest.sMPTfg/autopkgtest_tmp/test/test_gromov.py:148: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 422s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 422s 422s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 422s /usr/lib/python3/dist-packages/ot/backend.py:1143: RuntimeWarning: divide by zero encountered in log 422s return np.log(a) 422s 422s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 422s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 422s v = b / KtransposeU 422s 422s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 422s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 422s v = b / KtransposeU 422s 422s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 422s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 422s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 422s warnings.warn('Warning: numerical errors at iteration %d' % ii) 422s 422s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 422s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1045: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 422s warnings.warn("Solver failed to produce a transport plan. You might " 422s 422s test/test_gromov.py::test_pointwise_gromov[numpy] 422s test/test_gromov.py::test_pointwise_gromov[numpy] 422s test/test_gromov.py::test_pointwise_gromov[numpy] 422s test/test_gromov.py::test_pointwise_gromov[numpy] 422s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 422s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 422s 422s test/test_gromov.py::test_pointwise_gromov[numpy] 422s test/test_gromov.py::test_pointwise_gromov[numpy] 422s test/test_gromov.py::test_pointwise_gromov[numpy] 422s test/test_gromov.py::test_pointwise_gromov[numpy] 422s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 422s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 422s 422s test/test_gromov.py: 400 warnings 422s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 422s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 422s 422s test/test_gromov.py: 400 warnings 422s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 422s index[1] = generator.choice( 422s 422s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 422s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 422s warnings.warn("Solver failed to produce a transport plan. You might " 422s 422s test/test_gromov.py::test_fgw_integer_warnings[numpy] 422s /tmp/autopkgtest.sMPTfg/autopkgtest_tmp/test/test_gromov.py:1580: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 422s G, log = ot.gromov.fused_gromov_wasserstein( 422s 422s test/test_gromov.py::test_fgw_integer_warnings[numpy] 422s /tmp/autopkgtest.sMPTfg/autopkgtest_tmp/test/test_gromov.py:1583: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 422s Gb, logb = ot.gromov.fused_gromov_wasserstein( 422s 422s test/test_mapping.py::test_joint_OT_mapping 422s /usr/lib/python3/dist-packages/ot/mapping.py:557: RuntimeWarning: invalid value encountered in scalar divide 422s if abs(vloss[-1] - vloss[-2]) / abs(vloss[-2]) < stopThr: 422s 422s test/test_mapping.py::test_joint_OT_mapping 422s /usr/lib/python3/dist-packages/ot/mapping.py:565: RuntimeWarning: invalid value encountered in scalar divide 422s it, vloss[-1], (vloss[-1] - vloss[-2]) / abs(vloss[-2]))) 422s 422s test/test_regpath.py: 232 warnings 422s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 422s M[-1, -1] = 1 / s 422s 422s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 422s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: divide by zero encountered in divide 422s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 422s 422s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 422s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: invalid value encountered in divide 422s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 422s 422s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 422s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 422s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 422s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 422s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 422s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 422s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 422s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 422s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 422s 422s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 422s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 422s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 422s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 422s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 422s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 422s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 422s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 422s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 422s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 422s 422s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 422s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 422s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 422s v = (b / Ktu) ** fi_2 422s 422s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 422s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 422s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 422s warnings.warn('Numerical errors at iteration %s' % i) 422s 422s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 422s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 422s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 422s 422s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 422s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 422s warnings.warn("The div parameter should be either equal to 'kl' or \ 422s 422s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 422s ===== 512 passed, 70 skipped, 4 xfailed, 1123 warnings in 60.24s (0:01:00) ===== 422s ********** 422s autopkgtest [01:51:31]: test upstream.sh: -----------------------] 422s upstream.sh PASS 422s autopkgtest [01:51:31]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 422s autopkgtest [01:51:31]: @@@@@@@@@@@@@@@@@@@@ summary 422s upstream.sh PASS 436s nova [W] Skipping flock for amd64 436s Creating nova instance adt-oracular-amd64-python-pot-20240721-014420-juju-7f2275-prod-proposed-migration-environment-3-e5a814c1-73ea-447d-91b7-d1c7a0b879ce from image adt/ubuntu-oracular-amd64-server-20240720.img (UUID 7d1e67ab-b95e-41e3-9f93-a01c05dbb6a2)...