0s autopkgtest [23:49:30]: starting date and time: 2024-07-20 23:49:30+0000 0s autopkgtest [23:49:30]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [23:49:30]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.h3simd6k/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pybigwig --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.4-1 python3-stdlib-extensions/3.12.4-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-70.secgroup --name adt-oracular-amd64-pybigwig-20240720-234929-juju-7f2275-prod-proposed-migration-environment-3-12267ef0-1631-47b4-befe-3e5d7e534e26 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 77s autopkgtest [23:50:47]: testbed dpkg architecture: amd64 77s autopkgtest [23:50:47]: testbed apt version: 2.9.6 77s autopkgtest [23:50:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 77s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 77s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [396 kB] 77s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 77s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4092 B] 77s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [62.2 kB] 77s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [119 kB] 77s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [87.4 kB] 77s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 77s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 77s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 77s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 77s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [353 kB] 77s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [526 kB] 77s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 77s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [8604 B] 77s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 77s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 79s Fetched 1748 kB in 0s (6523 kB/s) 79s Reading package lists... 80s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Calculating upgrade... 81s The following packages will be upgraded: 81s libbpf1 libheif-plugin-aomdec libheif-plugin-aomenc libheif-plugin-libde265 81s libheif1 libpython3-stdlib python3 python3-gdbm python3-minimal 81s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 560 kB of archives. 81s After this operation, 30.7 kB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-minimal amd64 3.12.4-1 [27.1 kB] 81s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3 amd64 3.12.4-1 [24.0 kB] 81s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpython3-stdlib amd64 3.12.4-1 [9818 B] 81s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libbpf1 amd64 1:1.4.5-1 [172 kB] 81s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-gdbm amd64 3.12.4-2 [18.2 kB] 81s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-aomdec amd64 1.17.6-4build1 [10.3 kB] 81s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-aomenc amd64 1.17.6-4build1 [14.8 kB] 81s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif1 amd64 1.17.6-4build1 [276 kB] 81s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-libde265 amd64 1.17.6-4build1 [8328 B] 82s Fetched 560 kB in 0s (25.0 MB/s) 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 82s Preparing to unpack .../python3-minimal_3.12.4-1_amd64.deb ... 82s Unpacking python3-minimal (3.12.4-1) over (3.12.3-0ubuntu1) ... 82s Setting up python3-minimal (3.12.4-1) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 82s Preparing to unpack .../0-python3_3.12.4-1_amd64.deb ... 82s Unpacking python3 (3.12.4-1) over (3.12.3-0ubuntu1) ... 82s Preparing to unpack .../1-libpython3-stdlib_3.12.4-1_amd64.deb ... 82s Unpacking libpython3-stdlib:amd64 (3.12.4-1) over (3.12.3-0ubuntu1) ... 82s Preparing to unpack .../2-libbpf1_1%3a1.4.5-1_amd64.deb ... 82s Unpacking libbpf1:amd64 (1:1.4.5-1) over (1:1.4.3-1) ... 82s Preparing to unpack .../3-python3-gdbm_3.12.4-2_amd64.deb ... 82s Unpacking python3-gdbm:amd64 (3.12.4-2) over (3.12.3-0ubuntu1) ... 83s Preparing to unpack .../4-libheif-plugin-aomdec_1.17.6-4build1_amd64.deb ... 83s Unpacking libheif-plugin-aomdec:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 83s Preparing to unpack .../5-libheif-plugin-aomenc_1.17.6-4build1_amd64.deb ... 83s Unpacking libheif-plugin-aomenc:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 83s Preparing to unpack .../6-libheif1_1.17.6-4build1_amd64.deb ... 83s Unpacking libheif1:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 83s Preparing to unpack .../7-libheif-plugin-libde265_1.17.6-4build1_amd64.deb ... 83s Unpacking libheif-plugin-libde265:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 83s Setting up libbpf1:amd64 (1:1.4.5-1) ... 83s Setting up libpython3-stdlib:amd64 (3.12.4-1) ... 83s Setting up python3 (3.12.4-1) ... 83s Setting up python3-gdbm:amd64 (3.12.4-2) ... 83s Setting up libheif-plugin-aomdec:amd64 (1.17.6-4build1) ... 83s Setting up libheif1:amd64 (1.17.6-4build1) ... 83s Setting up libheif-plugin-libde265:amd64 (1.17.6-4build1) ... 83s Setting up libheif-plugin-aomenc:amd64 (1.17.6-4build1) ... 83s Processing triggers for libc-bin (2.39-0ubuntu9) ... 83s Processing triggers for man-db (2.12.1-2) ... 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 88s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 88s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 89s Reading package lists... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s Calculating upgrade... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s autopkgtest [23:51:19]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 110s autopkgtest [23:51:20]: @@@@@@@@@@@@@@@@@@@@ apt-source pybigwig 111s Get:1 http://ftpmaster.internal/ubuntu oracular/universe pybigwig 0.3.22+dfsg-1build3 (dsc) [2246 B] 111s Get:2 http://ftpmaster.internal/ubuntu oracular/universe pybigwig 0.3.22+dfsg-1build3 (tar) [31.6 kB] 111s Get:3 http://ftpmaster.internal/ubuntu oracular/universe pybigwig 0.3.22+dfsg-1build3 (diff) [4424 B] 111s gpgv: Signature made Mon Apr 1 07:17:01 2024 UTC 111s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 111s gpgv: Can't check signature: No public key 111s dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.22+dfsg-1build3.dsc: no acceptable signature found 111s autopkgtest [23:51:21]: testing package pybigwig version 0.3.22+dfsg-1build3 111s autopkgtest [23:51:21]: build not needed 111s autopkgtest [23:51:21]: test command1: preparing testbed 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Starting pkgProblemResolver with broken count: 0 118s Starting 2 pkgProblemResolver with broken count: 0 118s Done 119s The following additional packages will be installed: 119s libbigwig0t64 libblas3 libgfortran5 liblapack3 libpython3.12t64 python3-all 119s python3-numpy python3-pybigwig 119s Suggested packages: 119s gcc gfortran python-numpy-doc python3-dev python3-pytest 119s The following NEW packages will be installed: 119s autopkgtest-satdep libbigwig0t64 libblas3 libgfortran5 liblapack3 119s libpython3.12t64 python3-all python3-numpy python3-pybigwig 119s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. 119s Need to get 10.6 MB/10.6 MB of archives. 119s After this operation, 44.6 MB of additional disk space will be used. 119s Get:1 /tmp/autopkgtest.SkQhzs/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [716 B] 119s Get:2 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbigwig0t64 amd64 0.4.7+dfsg-3.1build2 [30.2 kB] 119s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 119s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-4ubuntu2 [909 kB] 119s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 119s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libpython3.12t64 amd64 3.12.4-1ubuntu1 [2341 kB] 119s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-all amd64 3.12.4-1 [882 B] 119s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 119s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pybigwig amd64 0.3.22+dfsg-1build3 [40.8 kB] 119s Fetched 10.6 MB in 0s (82.8 MB/s) 119s Selecting previously unselected package libbigwig0t64:amd64. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74490 files and directories currently installed.) 119s Preparing to unpack .../0-libbigwig0t64_0.4.7+dfsg-3.1build2_amd64.deb ... 119s Unpacking libbigwig0t64:amd64 (0.4.7+dfsg-3.1build2) ... 119s Selecting previously unselected package libblas3:amd64. 119s Preparing to unpack .../1-libblas3_3.12.0-3build1_amd64.deb ... 119s Unpacking libblas3:amd64 (3.12.0-3build1) ... 119s Selecting previously unselected package libgfortran5:amd64. 119s Preparing to unpack .../2-libgfortran5_14.1.0-4ubuntu2_amd64.deb ... 119s Unpacking libgfortran5:amd64 (14.1.0-4ubuntu2) ... 119s Selecting previously unselected package liblapack3:amd64. 119s Preparing to unpack .../3-liblapack3_3.12.0-3build1_amd64.deb ... 119s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 119s Selecting previously unselected package libpython3.12t64:amd64. 119s Preparing to unpack .../4-libpython3.12t64_3.12.4-1ubuntu1_amd64.deb ... 119s Unpacking libpython3.12t64:amd64 (3.12.4-1ubuntu1) ... 119s Selecting previously unselected package python3-all. 119s Preparing to unpack .../5-python3-all_3.12.4-1_amd64.deb ... 119s Unpacking python3-all (3.12.4-1) ... 120s Selecting previously unselected package python3-numpy. 120s Preparing to unpack .../6-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 120s Unpacking python3-numpy (1:1.26.4+ds-10) ... 120s Selecting previously unselected package python3-pybigwig. 120s Preparing to unpack .../7-python3-pybigwig_0.3.22+dfsg-1build3_amd64.deb ... 120s Unpacking python3-pybigwig (0.3.22+dfsg-1build3) ... 120s Selecting previously unselected package autopkgtest-satdep. 120s Preparing to unpack .../8-1-autopkgtest-satdep.deb ... 120s Unpacking autopkgtest-satdep (0) ... 120s Setting up python3-all (3.12.4-1) ... 120s Setting up libpython3.12t64:amd64 (3.12.4-1ubuntu1) ... 120s Setting up libblas3:amd64 (3.12.0-3build1) ... 120s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 120s Setting up libgfortran5:amd64 (14.1.0-4ubuntu2) ... 120s Setting up libbigwig0t64:amd64 (0.4.7+dfsg-3.1build2) ... 120s Setting up liblapack3:amd64 (3.12.0-3build1) ... 120s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 120s Setting up python3-numpy (1:1.26.4+ds-10) ... 122s Setting up python3-pybigwig (0.3.22+dfsg-1build3) ... 122s Setting up autopkgtest-satdep (0) ... 122s Processing triggers for man-db (2.12.1-2) ... 122s Processing triggers for libc-bin (2.39-0ubuntu9) ... 124s (Reading database ... 75415 files and directories currently installed.) 124s Removing autopkgtest-satdep (0) ... 124s autopkgtest [23:51:34]: test command1: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd pyBigWigTest ; $py test.py ; cd .. ; done 124s autopkgtest [23:51:34]: test command1: [----------------------- 125s autopkgtest [23:51:35]: test command1: -----------------------] 129s autopkgtest [23:51:39]: test command1: - - - - - - - - - - results - - - - - - - - - - 129s command1 PASS 137s autopkgtest [23:51:47]: @@@@@@@@@@@@@@@@@@@@ summary 137s command1 PASS 168s nova [W] Skipping flock for amd64 168s Creating nova instance adt-oracular-amd64-pybigwig-20240720-234929-juju-7f2275-prod-proposed-migration-environment-3-12267ef0-1631-47b4-befe-3e5d7e534e26 from image adt/ubuntu-oracular-amd64-server-20240720.img (UUID 7d1e67ab-b95e-41e3-9f93-a01c05dbb6a2)...