0s autopkgtest [18:07:11]: starting date and time: 2024-07-12 18:07:11+0000 0s autopkgtest [18:07:11]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [18:07:11]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.treb9mmu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pybigwig --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-58.secgroup --name adt-oracular-amd64-pybigwig-20240712-180711-juju-7f2275-prod-proposed-migration-environment-3-81048e64-f137-4422-acfd-1cbb22a2948c --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 113s autopkgtest [18:09:04]: testbed dpkg architecture: amd64 113s autopkgtest [18:09:04]: testbed apt version: 2.9.6 113s autopkgtest [18:09:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 126s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 126s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 126s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 126s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.6 kB] 126s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [334 kB] 126s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [70.9 kB] 126s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [98.2 kB] 126s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2104 B] 126s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 126s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 126s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 126s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [368 kB] 126s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [224 kB] 126s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9228 B] 126s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 126s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B] 126s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 128s Fetched 1342 kB in 0s (5374 kB/s) 128s Reading package lists... 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s Calculating upgrade... 144s The following packages will be upgraded: 144s libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 144s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 10.3 MB of archives. 144s After this operation, 34.8 kB of additional disk space will be used. 144s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-devtools amd64 2.39-3.1ubuntu3 [29.3 kB] 144s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6-dev amd64 2.39-3.1ubuntu3 [2120 kB] 144s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-dev-bin amd64 2.39-3.1ubuntu3 [20.4 kB] 144s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6 amd64 2.39-3.1ubuntu3 [3262 kB] 144s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-bin amd64 2.39-3.1ubuntu3 [680 kB] 144s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 locales all 2.39-3.1ubuntu3 [4220 kB] 144s Preconfiguring packages ... 144s Fetched 10.3 MB in 0s (84.5 MB/s) 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74486 files and directories currently installed.) 145s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_amd64.deb ... 145s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 145s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_amd64.deb ... 145s Unpacking libc6-dev:amd64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 145s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_amd64.deb ... 145s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 145s Preparing to unpack .../libc6_2.39-3.1ubuntu3_amd64.deb ... 145s Unpacking libc6:amd64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 145s Setting up libc6:amd64 (2.39-3.1ubuntu3) ... 145s Error: Could not restart systemd, systemd binary not working 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74486 files and directories currently installed.) 145s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_amd64.deb ... 145s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 145s Setting up libc-bin (2.39-3.1ubuntu3) ... 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74486 files and directories currently installed.) 146s Preparing to unpack .../locales_2.39-3.1ubuntu3_all.deb ... 146s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 146s Setting up locales (2.39-3.1ubuntu3) ... 146s Generating locales (this might take a while)... 148s en_US.UTF-8... done 148s Generation complete. 148s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 148s Setting up libc-devtools (2.39-3.1ubuntu3) ... 148s Setting up libc6-dev:amd64 (2.39-3.1ubuntu3) ... 148s Processing triggers for man-db (2.12.1-2) ... 149s Processing triggers for systemd (256-1ubuntu1) ... 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 151s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 151s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 151s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 151s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 152s Reading package lists... 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 153s Calculating upgrade... 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 199s autopkgtest [18:10:30]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 201s autopkgtest [18:10:32]: @@@@@@@@@@@@@@@@@@@@ apt-source pybigwig 204s Get:1 http://ftpmaster.internal/ubuntu oracular/universe pybigwig 0.3.22+dfsg-1build3 (dsc) [2246 B] 204s Get:2 http://ftpmaster.internal/ubuntu oracular/universe pybigwig 0.3.22+dfsg-1build3 (tar) [31.6 kB] 204s Get:3 http://ftpmaster.internal/ubuntu oracular/universe pybigwig 0.3.22+dfsg-1build3 (diff) [4424 B] 204s gpgv: Signature made Mon Apr 1 07:17:01 2024 UTC 204s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 204s gpgv: Can't check signature: No public key 204s dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.22+dfsg-1build3.dsc: no acceptable signature found 204s autopkgtest [18:10:35]: testing package pybigwig version 0.3.22+dfsg-1build3 205s autopkgtest [18:10:36]: build not needed 206s autopkgtest [18:10:37]: test command1: preparing testbed 217s Reading package lists... 217s Building dependency tree... 217s Reading state information... 218s Starting pkgProblemResolver with broken count: 0 218s Starting 2 pkgProblemResolver with broken count: 0 218s Done 218s The following additional packages will be installed: 218s libbigwig0t64 libblas3 libgfortran5 liblapack3 libpython3.12t64 python3-all 218s python3-numpy python3-pybigwig 218s Suggested packages: 218s gcc gfortran python-numpy-doc python3-dev python3-pytest 218s The following NEW packages will be installed: 218s autopkgtest-satdep libbigwig0t64 libblas3 libgfortran5 liblapack3 218s libpython3.12t64 python3-all python3-numpy python3-pybigwig 218s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. 218s Need to get 10.7 MB/10.7 MB of archives. 218s After this operation, 44.4 MB of additional disk space will be used. 218s Get:1 /tmp/autopkgtest.NI4Y2u/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [716 B] 218s Get:2 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbigwig0t64 amd64 0.4.7+dfsg-3.1build2 [30.2 kB] 218s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 218s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 218s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 218s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libpython3.12t64 amd64 3.12.4-1ubuntu1 [2341 kB] 218s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 218s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 218s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pybigwig amd64 0.3.22+dfsg-1build3 [40.8 kB] 218s Fetched 10.7 MB in 0s (76.1 MB/s) 218s Selecting previously unselected package libbigwig0t64:amd64. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74486 files and directories currently installed.) 219s Preparing to unpack .../0-libbigwig0t64_0.4.7+dfsg-3.1build2_amd64.deb ... 219s Unpacking libbigwig0t64:amd64 (0.4.7+dfsg-3.1build2) ... 219s Selecting previously unselected package libblas3:amd64. 219s Preparing to unpack .../1-libblas3_3.12.0-3build1_amd64.deb ... 219s Unpacking libblas3:amd64 (3.12.0-3build1) ... 219s Selecting previously unselected package libgfortran5:amd64. 219s Preparing to unpack .../2-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 219s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 219s Selecting previously unselected package liblapack3:amd64. 219s Preparing to unpack .../3-liblapack3_3.12.0-3build1_amd64.deb ... 219s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 219s Selecting previously unselected package libpython3.12t64:amd64. 219s Preparing to unpack .../4-libpython3.12t64_3.12.4-1ubuntu1_amd64.deb ... 219s Unpacking libpython3.12t64:amd64 (3.12.4-1ubuntu1) ... 219s Selecting previously unselected package python3-all. 219s Preparing to unpack .../5-python3-all_3.12.3-0ubuntu1_amd64.deb ... 219s Unpacking python3-all (3.12.3-0ubuntu1) ... 219s Selecting previously unselected package python3-numpy. 219s Preparing to unpack .../6-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 219s Unpacking python3-numpy (1:1.26.4+ds-10) ... 219s Selecting previously unselected package python3-pybigwig. 219s Preparing to unpack .../7-python3-pybigwig_0.3.22+dfsg-1build3_amd64.deb ... 219s Unpacking python3-pybigwig (0.3.22+dfsg-1build3) ... 219s Selecting previously unselected package autopkgtest-satdep. 219s Preparing to unpack .../8-1-autopkgtest-satdep.deb ... 219s Unpacking autopkgtest-satdep (0) ... 219s Setting up python3-all (3.12.3-0ubuntu1) ... 219s Setting up libpython3.12t64:amd64 (3.12.4-1ubuntu1) ... 219s Setting up libblas3:amd64 (3.12.0-3build1) ... 219s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 219s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 219s Setting up libbigwig0t64:amd64 (0.4.7+dfsg-3.1build2) ... 219s Setting up liblapack3:amd64 (3.12.0-3build1) ... 219s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 219s Setting up python3-numpy (1:1.26.4+ds-10) ... 221s Setting up python3-pybigwig (0.3.22+dfsg-1build3) ... 221s Setting up autopkgtest-satdep (0) ... 221s Processing triggers for man-db (2.12.1-2) ... 221s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 249s (Reading database ... 75411 files and directories currently installed.) 249s Removing autopkgtest-satdep (0) ... 265s autopkgtest [18:11:36]: test command1: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd pyBigWigTest ; $py test.py ; cd .. ; done 265s autopkgtest [18:11:36]: test command1: [----------------------- 270s autopkgtest [18:11:41]: test command1: -----------------------] 286s autopkgtest [18:11:57]: test command1: - - - - - - - - - - results - - - - - - - - - - 286s command1 PASS 287s autopkgtest [18:11:58]: @@@@@@@@@@@@@@@@@@@@ summary 287s command1 PASS 330s nova [W] Skipping flock for amd64 330s Creating nova instance adt-oracular-amd64-pybigwig-20240712-180711-juju-7f2275-prod-proposed-migration-environment-3-81048e64-f137-4422-acfd-1cbb22a2948c from image adt/ubuntu-oracular-amd64-server-20240712.img (UUID 9132249a-6053-4497-bc26-981612ca03ad)...