0s autopkgtest [13:34:19]: starting date and time: 2024-07-23 13:34:19+0000 0s autopkgtest [13:34:19]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [13:34:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rmlb7s3o/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:boost1.83 --apt-upgrade prime-phylo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=boost1.83/1.83.0-3ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-103.secgroup --name adt-oracular-amd64-prime-phylo-20240723-133419-juju-7f2275-prod-proposed-migration-environment-2-d18c1b22-5dbb-4336-814d-ae5d3b95991d --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 165s autopkgtest [13:37:04]: testbed dpkg architecture: amd64 166s autopkgtest [13:37:04]: testbed apt version: 2.9.6 166s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 166s autopkgtest [13:37:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 166s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [5704 B] 166s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 166s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [66.5 kB] 166s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [393 kB] 166s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [90.6 kB] 166s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [136 kB] 166s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 166s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 166s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 166s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 166s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [555 kB] 166s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [347 kB] 166s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 166s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [9612 B] 166s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 166s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 167s Fetched 1795 kB in 0s (5922 kB/s) 167s Reading package lists... 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s Calculating upgrade... 177s The following packages will be upgraded: 177s gcc-14-base libgcc-s1 libstdc++6 systemd-hwe-hwdb 177s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 177s Need to get 920 kB of archives. 177s After this operation, 1024 B of additional disk space will be used. 177s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-14-base amd64 14.1.0-5ubuntu1 [49.9 kB] 177s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++6 amd64 14.1.0-5ubuntu1 [789 kB] 177s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-s1 amd64 14.1.0-5ubuntu1 [78.3 kB] 177s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 systemd-hwe-hwdb all 256.2.1 [3210 B] 177s Fetched 920 kB in 0s (23.5 MB/s) 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 177s Preparing to unpack .../gcc-14-base_14.1.0-5ubuntu1_amd64.deb ... 177s Unpacking gcc-14-base:amd64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 177s Setting up gcc-14-base:amd64 (14.1.0-5ubuntu1) ... 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 177s Preparing to unpack .../libstdc++6_14.1.0-5ubuntu1_amd64.deb ... 177s Unpacking libstdc++6:amd64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 177s Setting up libstdc++6:amd64 (14.1.0-5ubuntu1) ... 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 177s Preparing to unpack .../libgcc-s1_14.1.0-5ubuntu1_amd64.deb ... 177s Unpacking libgcc-s1:amd64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 177s Setting up libgcc-s1:amd64 (14.1.0-5ubuntu1) ... 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 178s Preparing to unpack .../systemd-hwe-hwdb_256.2.1_all.deb ... 178s Unpacking systemd-hwe-hwdb (256.2.1) over (255.1.3) ... 178s Setting up systemd-hwe-hwdb (256.2.1) ... 178s Processing triggers for udev (256-1ubuntu1) ... 178s Processing triggers for libc-bin (2.39-0ubuntu9) ... 179s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 179s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 179s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 179s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 181s Reading package lists... 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s Calculating upgrade... 182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 190s autopkgtest [13:37:29]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 191s autopkgtest [13:37:30]: @@@@@@@@@@@@@@@@@@@@ apt-source prime-phylo 201s Get:1 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (dsc) [2175 B] 201s Get:2 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (tar) [751 kB] 201s Get:3 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (diff) [9072 B] 201s gpgv: Signature made Fri Apr 12 11:16:52 2024 UTC 201s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 201s gpgv: Can't check signature: No public key 201s dpkg-source: warning: cannot verify inline signature for ./prime-phylo_1.0.11-11.dsc: no acceptable signature found 201s autopkgtest [13:37:40]: testing package prime-phylo version 1.0.11-11 202s autopkgtest [13:37:41]: build not needed 205s autopkgtest [13:37:44]: test run-unit-test: preparing testbed 225s Reading package lists... 225s Building dependency tree... 225s Reading state information... 225s Starting pkgProblemResolver with broken count: 0 225s Starting 2 pkgProblemResolver with broken count: 0 225s Done 226s The following additional packages will be installed: 226s libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libboost-mpi1.83.0 226s libboost-serialization1.83.0 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 226s libfabric1 libgfortran5 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins 226s libhwloc15 liblapack3 libllvm17t64 libmunge2 libopenmpi3t64 libpciaccess0 226s libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libucx0 libxnvctrl0 226s ocl-icd-libopencl1 prime-phylo 226s Suggested packages: 226s libhwloc-contrib-plugins opencl-icd njplot treeviewx muscle probalign mafft 226s python3-biopython mrbayes phyml raxml 226s The following NEW packages will be installed: 226s autopkgtest-satdep libamd-comgr2 libamdhip64-5 libatomic1 libblas3 226s libboost-mpi1.83.0 libboost-serialization1.83.0 libdrm-amdgpu1 226s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libhsa-runtime64-1 226s libhsakmt1 libhwloc-plugins libhwloc15 liblapack3 libllvm17t64 libmunge2 226s libopenmpi3t64 libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 226s librdmacm1t64 libucx0 libxnvctrl0 ocl-icd-libopencl1 prime-phylo 226s 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. 226s Need to get 61.7 MB/61.7 MB of archives. 226s After this operation, 251 MB of additional disk space will be used. 226s Get:1 /tmp/autopkgtest.rU7EL5/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 226s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-12 [26.2 MB] 226s Get:3 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 226s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [20.7 kB] 226s Get:5 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 226s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 226s Get:7 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamdhip64-5 amd64 5.7.1-4 [9526 kB] 226s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-5ubuntu1 [10.3 kB] 226s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 226s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 libboost-serialization1.83.0 amd64 1.83.0-3ubuntu2 [340 kB] 226s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 226s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 226s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 226s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 librdmacm1t64 amd64 52.0-2 [70.7 kB] 226s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfabric1 amd64 1.17.0-3build2 [657 kB] 226s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc15 amd64 2.10.0-1build1 [172 kB] 226s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 226s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 226s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 226s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 226s Get:21 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc-plugins amd64 2.10.0-1build1 [15.7 kB] 226s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpmix2t64 amd64 5.0.1-4.1build1 [697 kB] 226s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libucx0 amd64 1.16.0+ds-5ubuntu1 [1140 kB] 226s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenmpi3t64 amd64 4.1.6-7ubuntu2 [2563 kB] 226s Get:25 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 libboost-mpi1.83.0 amd64 1.83.0-3ubuntu2 [271 kB] 227s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-5ubuntu1 [909 kB] 227s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 227s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 prime-phylo amd64 1.0.11-11 [806 kB] 227s Fetched 61.7 MB in 1s (118 MB/s) 227s Selecting previously unselected package libllvm17t64:amd64. 227s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 227s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-12_amd64.deb ... 227s Unpacking libllvm17t64:amd64 (1:17.0.6-12) ... 228s Selecting previously unselected package libamd-comgr2:amd64. 228s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 228s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 228s Selecting previously unselected package libdrm-amdgpu1:amd64. 228s Preparing to unpack .../02-libdrm-amdgpu1_2.4.121-2_amd64.deb ... 228s Unpacking libdrm-amdgpu1:amd64 (2.4.121-2) ... 228s Selecting previously unselected package libhsakmt1:amd64. 228s Preparing to unpack .../03-libhsakmt1_5.7.0-1build1_amd64.deb ... 228s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 228s Selecting previously unselected package libhsa-runtime64-1. 228s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 228s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 228s Selecting previously unselected package libamdhip64-5. 228s Preparing to unpack .../05-libamdhip64-5_5.7.1-4_amd64.deb ... 228s Unpacking libamdhip64-5 (5.7.1-4) ... 228s Selecting previously unselected package libatomic1:amd64. 228s Preparing to unpack .../06-libatomic1_14.1.0-5ubuntu1_amd64.deb ... 228s Unpacking libatomic1:amd64 (14.1.0-5ubuntu1) ... 228s Selecting previously unselected package libblas3:amd64. 228s Preparing to unpack .../07-libblas3_3.12.0-3build1_amd64.deb ... 228s Unpacking libblas3:amd64 (3.12.0-3build1) ... 228s Selecting previously unselected package libboost-serialization1.83.0:amd64. 228s Preparing to unpack .../08-libboost-serialization1.83.0_1.83.0-3ubuntu2_amd64.deb ... 228s Unpacking libboost-serialization1.83.0:amd64 (1.83.0-3ubuntu2) ... 228s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 228s Preparing to unpack .../09-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 228s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 228s Selecting previously unselected package libpsm-infinipath1. 228s Preparing to unpack .../10-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 228s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 228s Selecting previously unselected package libpsm2-2. 228s Preparing to unpack .../11-libpsm2-2_11.2.185-2.1_amd64.deb ... 228s Unpacking libpsm2-2 (11.2.185-2.1) ... 228s Selecting previously unselected package librdmacm1t64:amd64. 228s Preparing to unpack .../12-librdmacm1t64_52.0-2_amd64.deb ... 228s Unpacking librdmacm1t64:amd64 (52.0-2) ... 228s Selecting previously unselected package libfabric1:amd64. 228s Preparing to unpack .../13-libfabric1_1.17.0-3build2_amd64.deb ... 228s Unpacking libfabric1:amd64 (1.17.0-3build2) ... 228s Selecting previously unselected package libhwloc15:amd64. 228s Preparing to unpack .../14-libhwloc15_2.10.0-1build1_amd64.deb ... 228s Unpacking libhwloc15:amd64 (2.10.0-1build1) ... 228s Selecting previously unselected package libmunge2:amd64. 228s Preparing to unpack .../15-libmunge2_0.5.15-4build1_amd64.deb ... 228s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 228s Selecting previously unselected package libpciaccess0:amd64. 228s Preparing to unpack .../16-libpciaccess0_0.17-3build1_amd64.deb ... 228s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 229s Selecting previously unselected package libxnvctrl0:amd64. 229s Preparing to unpack .../17-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 229s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 229s Selecting previously unselected package ocl-icd-libopencl1:amd64. 229s Preparing to unpack .../18-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 229s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 229s Selecting previously unselected package libhwloc-plugins:amd64. 229s Preparing to unpack .../19-libhwloc-plugins_2.10.0-1build1_amd64.deb ... 229s Unpacking libhwloc-plugins:amd64 (2.10.0-1build1) ... 229s Selecting previously unselected package libpmix2t64:amd64. 229s Preparing to unpack .../20-libpmix2t64_5.0.1-4.1build1_amd64.deb ... 229s Unpacking libpmix2t64:amd64 (5.0.1-4.1build1) ... 229s Selecting previously unselected package libucx0:amd64. 229s Preparing to unpack .../21-libucx0_1.16.0+ds-5ubuntu1_amd64.deb ... 229s Unpacking libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 229s Selecting previously unselected package libopenmpi3t64:amd64. 229s Preparing to unpack .../22-libopenmpi3t64_4.1.6-7ubuntu2_amd64.deb ... 229s Unpacking libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 229s Selecting previously unselected package libboost-mpi1.83.0. 229s Preparing to unpack .../23-libboost-mpi1.83.0_1.83.0-3ubuntu2_amd64.deb ... 229s Unpacking libboost-mpi1.83.0 (1.83.0-3ubuntu2) ... 229s Selecting previously unselected package libgfortran5:amd64. 229s Preparing to unpack .../24-libgfortran5_14.1.0-5ubuntu1_amd64.deb ... 229s Unpacking libgfortran5:amd64 (14.1.0-5ubuntu1) ... 229s Selecting previously unselected package liblapack3:amd64. 229s Preparing to unpack .../25-liblapack3_3.12.0-3build1_amd64.deb ... 229s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 229s Selecting previously unselected package prime-phylo. 229s Preparing to unpack .../26-prime-phylo_1.0.11-11_amd64.deb ... 229s Unpacking prime-phylo (1.0.11-11) ... 229s Selecting previously unselected package autopkgtest-satdep. 229s Preparing to unpack .../27-1-autopkgtest-satdep.deb ... 229s Unpacking autopkgtest-satdep (0) ... 229s Setting up libpciaccess0:amd64 (0.17-3build1) ... 229s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 229s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 229s Setting up libboost-serialization1.83.0:amd64 (1.83.0-3ubuntu2) ... 229s Setting up libblas3:amd64 (3.12.0-3build1) ... 229s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 229s Setting up libmunge2:amd64 (0.5.15-4build1) ... 229s Setting up libllvm17t64:amd64 (1:17.0.6-12) ... 229s Setting up libhwloc15:amd64 (2.10.0-1build1) ... 229s Setting up libatomic1:amd64 (14.1.0-5ubuntu1) ... 229s Setting up libgfortran5:amd64 (14.1.0-5ubuntu1) ... 229s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 229s Setting up libpsm2-2 (11.2.185-2.1) ... 229s Setting up librdmacm1t64:amd64 (52.0-2) ... 229s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 229s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 229s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 229s Setting up libdrm-amdgpu1:amd64 (2.4.121-2) ... 229s Setting up libfabric1:amd64 (1.17.0-3build2) ... 229s Setting up liblapack3:amd64 (3.12.0-3build1) ... 229s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 229s Setting up libhwloc-plugins:amd64 (2.10.0-1build1) ... 229s Setting up libpmix2t64:amd64 (5.0.1-4.1build1) ... 229s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 229s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 229s Setting up libamdhip64-5 (5.7.1-4) ... 229s Setting up libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 229s Setting up libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 229s Setting up libboost-mpi1.83.0 (1.83.0-3ubuntu2) ... 229s Setting up prime-phylo (1.0.11-11) ... 229s Setting up autopkgtest-satdep (0) ... 229s Processing triggers for man-db (2.12.1-2) ... 230s Processing triggers for libc-bin (2.39-0ubuntu9) ... 253s (Reading database ... 74906 files and directories currently installed.) 253s Removing autopkgtest-satdep (0) ... 254s autopkgtest [13:38:33]: test run-unit-test: [----------------------- 254s treesize_output: OK 254s leaf_names: OK 254s show_tree: OK 254s Expected output and generated output are same: PASS Test 1 314s L N alpha time 321s -3785.26 0 1 321s 321s PASS Test 2 321s autopkgtest [13:39:40]: test run-unit-test: -----------------------] 331s autopkgtest [13:39:50]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 331s run-unit-test PASS 332s autopkgtest [13:39:51]: @@@@@@@@@@@@@@@@@@@@ summary 332s run-unit-test PASS 413s nova [W] Skipping flock for amd64 413s Creating nova instance adt-oracular-amd64-prime-phylo-20240723-133419-juju-7f2275-prod-proposed-migration-environment-2-d18c1b22-5dbb-4336-814d-ae5d3b95991d from image adt/ubuntu-oracular-amd64-server-20240722.img (UUID bc70dd19-bfc6-4d23-903d-48876650ffb2)...