6s autopkgtest [17:16:55]: starting date and time: 2024-07-12 17:16:55+0000
  6s autopkgtest [17:16:55]: git checkout: fd3bed09 nova: allow more retries for quota issues
  6s autopkgtest [17:16:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cvy2nu66/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade ncbi-tools6 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-98.secgroup --name adt-oracular-amd64-ncbi-tools6-20240712-171648-juju-7f2275-prod-proposed-migration-environment-2-a489ec16-721b-4180-b40a-62092ac9bfb0 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
128s autopkgtest [17:18:57]: testbed dpkg architecture: amd64
128s autopkgtest [17:18:57]: testbed apt version: 2.9.6
128s autopkgtest [17:18:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup
129s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
129s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.6 kB]
129s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [334 kB]
129s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
129s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
129s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [70.9 kB]
129s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [98.2 kB]
129s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2104 B]
129s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB]
129s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B]
129s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B]
129s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [224 kB]
129s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [368 kB]
129s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9228 B]
129s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B]
129s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B]
129s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B]
130s Fetched 1342 kB in 0s (6095 kB/s)
130s Reading package lists...
137s Reading package lists...
137s Building dependency tree...
137s Reading state information...
138s Calculating upgrade...
138s The following packages will be upgraded:
138s   binutils binutils-common binutils-x86-64-linux-gnu gir1.2-glib-2.0
138s   inetutils-telnet libbinutils libc-bin libc-dev-bin libc-devtools libc6
138s   libc6-dev libctf-nobfd0 libctf0 libglib2.0-0t64 libglib2.0-data libgprofng0
138s   libnghttp2-14 libnss3 libsframe1 libssl3t64 locales openssh-client
138s   openssh-server openssh-sftp-server openssl telnet
138s 26 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
138s Need to get 22.8 MB of archives.
138s After this operation, 444 kB of additional disk space will be used.
138s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-devtools amd64 2.39-3.1ubuntu3 [29.3 kB]
138s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6-dev amd64 2.39-3.1ubuntu3 [2120 kB]
138s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-dev-bin amd64 2.39-3.1ubuntu3 [20.4 kB]
138s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6 amd64 2.39-3.1ubuntu3 [3262 kB]
138s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-bin amd64 2.39-3.1ubuntu3 [680 kB]
138s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libssl3t64 amd64 3.2.2-1ubuntu1 [2138 kB]
138s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 openssh-sftp-server amd64 1:9.6p1-3ubuntu17 [37.1 kB]
138s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 openssh-server amd64 1:9.6p1-3ubuntu17 [509 kB]
138s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 openssh-client amd64 1:9.6p1-3ubuntu17 [905 kB]
138s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 gir1.2-glib-2.0 amd64 2.80.4-1ubuntu1 [182 kB]
138s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libglib2.0-0t64 amd64 2.80.4-1ubuntu1 [1545 kB]
138s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB]
138s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 locales all 2.39-3.1ubuntu3 [4220 kB]
138s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 openssl amd64 3.2.2-1ubuntu1 [1122 kB]
138s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 inetutils-telnet amd64 2:2.5-5ubuntu1 [105 kB]
138s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libnghttp2-14 amd64 1.62.1-2 [75.1 kB]
138s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 telnet all 0.17+2.5-5ubuntu1 [3688 B]
138s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libgprofng0 amd64 2.42.50.20240710-1ubuntu1 [860 kB]
138s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf0 amd64 2.42.50.20240710-1ubuntu1 [95.6 kB]
138s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf-nobfd0 amd64 2.42.50.20240710-1ubuntu1 [97.6 kB]
138s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-x86-64-linux-gnu amd64 2.42.50.20240710-1ubuntu1 [2477 kB]
138s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libbinutils amd64 2.42.50.20240710-1ubuntu1 [574 kB]
138s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils amd64 2.42.50.20240710-1ubuntu1 [18.1 kB]
138s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-common amd64 2.42.50.20240710-1ubuntu1 [243 kB]
138s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libsframe1 amd64 2.42.50.20240710-1ubuntu1 [14.4 kB]
138s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libnss3 amd64 2:3.102-1 [1399 kB]
138s Preconfiguring packages ...
138s Fetched 22.8 MB in 0s (80.7 MB/s)
139s (Reading database ... 
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(Reading database ... 74487 files and directories currently installed.)
139s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_amd64.deb ...
139s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
139s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_amd64.deb ...
139s Unpacking libc6-dev:amd64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
139s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_amd64.deb ...
139s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
139s Preparing to unpack .../libc6_2.39-3.1ubuntu3_amd64.deb ...
139s Unpacking libc6:amd64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
139s Setting up libc6:amd64 (2.39-3.1ubuntu3) ...
139s Error: Could not restart systemd, systemd binary not working
139s (Reading database ... 
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(Reading database ... 74487 files and directories currently installed.)
139s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_amd64.deb ...
139s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
140s Setting up libc-bin (2.39-3.1ubuntu3) ...
140s (Reading database ... 
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(Reading database ... 74487 files and directories currently installed.)
140s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_amd64.deb ...
140s Unpacking libssl3t64:amd64 (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ...
140s Setting up libssl3t64:amd64 (3.2.2-1ubuntu1) ...
140s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74487 files and directories currently installed.)
140s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_amd64.deb ...
140s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ...
140s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_amd64.deb ...
140s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ...
140s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_amd64.deb ...
140s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ...
140s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_amd64.deb ...
140s Unpacking gir1.2-glib-2.0:amd64 (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ...
140s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_amd64.deb ...
140s Unpacking libglib2.0-0t64:amd64 (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ...
140s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ...
140s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ...
140s Preparing to unpack .../06-locales_2.39-3.1ubuntu3_all.deb ...
140s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ...
140s Preparing to unpack .../07-openssl_3.2.2-1ubuntu1_amd64.deb ...
140s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ...
141s Preparing to unpack .../08-inetutils-telnet_2%3a2.5-5ubuntu1_amd64.deb ...
141s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ...
141s Preparing to unpack .../09-libnghttp2-14_1.62.1-2_amd64.deb ...
141s Unpacking libnghttp2-14:amd64 (1.62.1-2) over (1.62.1-1) ...
141s Preparing to unpack .../10-telnet_0.17+2.5-5ubuntu1_all.deb ...
141s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ...
141s Preparing to unpack .../11-libgprofng0_2.42.50.20240710-1ubuntu1_amd64.deb ...
141s Unpacking libgprofng0:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ...
141s Preparing to unpack .../12-libctf0_2.42.50.20240710-1ubuntu1_amd64.deb ...
141s Unpacking libctf0:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ...
141s Preparing to unpack .../13-libctf-nobfd0_2.42.50.20240710-1ubuntu1_amd64.deb ...
141s Unpacking libctf-nobfd0:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ...
141s Preparing to unpack .../14-binutils-x86-64-linux-gnu_2.42.50.20240710-1ubuntu1_amd64.deb ...
141s Unpacking binutils-x86-64-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ...
141s Preparing to unpack .../15-libbinutils_2.42.50.20240710-1ubuntu1_amd64.deb ...
141s Unpacking libbinutils:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ...
141s Preparing to unpack .../16-binutils_2.42.50.20240710-1ubuntu1_amd64.deb ...
141s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ...
141s Preparing to unpack .../17-binutils-common_2.42.50.20240710-1ubuntu1_amd64.deb ...
141s Unpacking binutils-common:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ...
141s Preparing to unpack .../18-libsframe1_2.42.50.20240710-1ubuntu1_amd64.deb ...
141s Unpacking libsframe1:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ...
141s Preparing to unpack .../19-libnss3_2%3a3.102-1_amd64.deb ...
141s Unpacking libnss3:amd64 (2:3.102-1) over (2:3.101-1) ...
141s Setting up openssh-client (1:9.6p1-3ubuntu17) ...
141s Setting up binutils-common:amd64 (2.42.50.20240710-1ubuntu1) ...
141s Setting up libnghttp2-14:amd64 (1.62.1-2) ...
141s Setting up inetutils-telnet (2:2.5-5ubuntu1) ...
141s Setting up libctf-nobfd0:amd64 (2.42.50.20240710-1ubuntu1) ...
141s Setting up libnss3:amd64 (2:3.102-1) ...
141s Setting up locales (2.39-3.1ubuntu3) ...
142s Generating locales (this might take a while)...
143s   en_US.UTF-8... done
143s Generation complete.
143s Setting up libsframe1:amd64 (2.42.50.20240710-1ubuntu1) ...
143s Setting up libglib2.0-0t64:amd64 (2.80.4-1ubuntu1) ...
143s No schema files found: doing nothing.
143s Setting up libglib2.0-data (2.80.4-1ubuntu1) ...
143s Setting up gir1.2-glib-2.0:amd64 (2.80.4-1ubuntu1) ...
143s Setting up libbinutils:amd64 (2.42.50.20240710-1ubuntu1) ...
143s Setting up libc-dev-bin (2.39-3.1ubuntu3) ...
143s Setting up openssl (3.2.2-1ubuntu1) ...
143s Installing new version of config file /etc/ssl/openssl.cnf ...
143s Setting up libc-devtools (2.39-3.1ubuntu3) ...
143s Setting up libctf0:amd64 (2.42.50.20240710-1ubuntu1) ...
143s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ...
143s Setting up telnet (0.17+2.5-5ubuntu1) ...
143s Setting up openssh-server (1:9.6p1-3ubuntu17) ...
143s Installing new version of config file /etc/pam.d/sshd ...
145s Setting up libgprofng0:amd64 (2.42.50.20240710-1ubuntu1) ...
145s Setting up libc6-dev:amd64 (2.39-3.1ubuntu3) ...
145s Setting up binutils-x86-64-linux-gnu (2.42.50.20240710-1ubuntu1) ...
145s Setting up binutils (2.42.50.20240710-1ubuntu1) ...
145s Processing triggers for libc-bin (2.39-3.1ubuntu3) ...
145s Processing triggers for ufw (0.36.2-6) ...
145s Processing triggers for systemd (256-1ubuntu1) ...
146s Processing triggers for man-db (2.12.1-2) ...
147s Reading package lists...
147s Building dependency tree...
147s Reading state information...
148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
148s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
148s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
148s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
148s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
150s Reading package lists...
150s Reading package lists...
150s Building dependency tree...
150s Reading state information...
150s Calculating upgrade...
150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
150s Reading package lists...
151s Building dependency tree...
151s Reading state information...
151s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
154s autopkgtest [17:19:23]: rebooting testbed after setup commands that affected boot
205s autopkgtest [17:20:14]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024
214s autopkgtest [17:20:23]: @@@@@@@@@@@@@@@@@@@@ apt-source ncbi-tools6
255s Get:1 http://ftpmaster.internal/ubuntu oracular/universe ncbi-tools6 6.1.20170106+dfsg2-2 (dsc) [2919 B]
255s Get:2 http://ftpmaster.internal/ubuntu oracular/universe ncbi-tools6 6.1.20170106+dfsg2-2 (tar) [65.7 MB]
255s Get:3 http://ftpmaster.internal/ubuntu oracular/universe ncbi-tools6 6.1.20170106+dfsg2-2 (diff) [1514 kB]
255s gpgv: Signature made Wed Mar 20 03:27:56 2024 UTC
255s gpgv:                using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2
255s gpgv: Can't check signature: No public key
255s dpkg-source: warning: cannot verify inline signature for ./ncbi-tools6_6.1.20170106+dfsg2-2.dsc: no acceptable signature found
268s autopkgtest [17:21:12]: testing package ncbi-tools6 version 6.1.20170106+dfsg2-2
268s autopkgtest [17:21:17]: build not needed
352s autopkgtest [17:22:41]: test run-unit-test: preparing testbed
357s Reading package lists...
357s Building dependency tree...
357s Reading state information...
358s Starting pkgProblemResolver with broken count: 0
358s Starting 2 pkgProblemResolver with broken count: 0
358s Done
358s The following additional packages will be installed:
358s   libbrotli-dev libbz2-dev libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2
358s   libdrm-radeon1 libexpat1-dev libfontconfig-dev libfontconfig1-dev
358s   libfreetype-dev libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglu1-mesa
358s   libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libice-dev
358s   libice6 libllvm17t64 libmotif-common libmotif-dev libmrm4 libncbi6-dev
358s   libncbi6t64 libopengl-dev libopengl0 libpciaccess0 libpkgconf3 libpng-dev
358s   libsm-dev libsm6 libuil4 libvibrant6-dev libvibrant6t64 libvulkan1
358s   libx11-dev libx11-xcb1 libxau-dev libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
358s   libxcb-present0 libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0
358s   libxcb1-dev libxdmcp-dev libxext-dev libxfixes3 libxft-dev libxft2 libxm4
358s   libxmu-dev libxmu-headers libxmu6 libxrender-dev libxrender1 libxshmfence1
358s   libxt-dev libxt6t64 libxxf86vm1 ncbi-cn3d ncbi-data ncbi-rrna-data
358s   ncbi-tools-bin ncbi-tools-x11 pkgconf pkgconf-bin uil uuid-dev x11-common
358s   x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
358s Suggested packages:
358s   freetype2-doc libice-doc libsm-doc libx11-doc libxcb-doc libxext-doc
358s   libxt-doc ncbi-blast+
358s Recommended packages:
358s   bzip2-doc libgl1-amber-dri libpng-tools mesa-vulkan-drivers | vulkan-icd
358s   ncbi-blast+
358s The following NEW packages will be installed:
358s   autopkgtest-satdep libbrotli-dev libbz2-dev libdrm-amdgpu1 libdrm-intel1
358s   libdrm-nouveau2 libdrm-radeon1 libexpat1-dev libfontconfig-dev
358s   libfontconfig1-dev libfreetype-dev libgl-dev libgl1 libgl1-mesa-dri
358s   libglapi-mesa libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev
358s   libglx-mesa0 libglx0 libice-dev libice6 libllvm17t64 libmotif-common
358s   libmotif-dev libmrm4 libncbi6-dev libncbi6t64 libopengl-dev libopengl0
358s   libpciaccess0 libpkgconf3 libpng-dev libsm-dev libsm6 libuil4
358s   libvibrant6-dev libvibrant6t64 libvulkan1 libx11-dev libx11-xcb1 libxau-dev
358s   libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0
358s   libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1-dev libxdmcp-dev libxext-dev
358s   libxfixes3 libxft-dev libxft2 libxm4 libxmu-dev libxmu-headers libxmu6
358s   libxrender-dev libxrender1 libxshmfence1 libxt-dev libxt6t64 libxxf86vm1
358s   ncbi-cn3d ncbi-data ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 pkgconf
358s   pkgconf-bin uil uuid-dev x11-common x11proto-dev xorg-sgml-doctools
358s   xtrans-dev zlib1g-dev
358s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded.
358s Need to get 113 MB/113 MB of archives.
358s After this operation, 641 MB of additional disk space will be used.
358s Get:1 /tmp/autopkgtest.yK6haj/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [760 B]
358s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
358s Get:3 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmotif-common all 2.3.8-3.1build1 [10.1 kB]
358s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
358s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
358s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB]
358s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB]
358s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
358s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB]
358s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxm4 amd64 2.3.8-3.1build1 [1091 kB]
358s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmrm4 amd64 2.3.8-3.1build1 [61.2 kB]
358s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 libuil4 amd64 2.3.8-3.1build1 [149 kB]
358s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libbrotli-dev amd64 1.1.0-2build2 [353 kB]
358s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libbz2-dev amd64 1.0.8-5.1 [33.6 kB]
358s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [20.7 kB]
358s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB]
358s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-intel1 amd64 2.4.121-2 [63.8 kB]
358s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-nouveau2 amd64 2.4.121-2 [17.6 kB]
358s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-radeon1 amd64 2.4.121-2 [20.7 kB]
358s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libexpat1-dev amd64 2.6.2-1 [998 kB]
358s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1ubuntu2 [894 kB]
358s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libpng-dev amd64 1.6.43-5build1 [264 kB]
358s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libfreetype-dev amd64 2.13.2+dfsg-1build3 [575 kB]
358s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 uuid-dev amd64 2.39.3-9ubuntu6 [33.5 kB]
358s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libpkgconf3 amd64 1.8.1-3 [30.7 kB]
358s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 pkgconf-bin amd64 1.8.1-3 [21.0 kB]
358s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 pkgconf amd64 1.8.1-3 [16.8 kB]
358s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libfontconfig-dev amd64 2.15.0-1.1ubuntu2 [161 kB]
358s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libfontconfig1-dev amd64 2.15.0-1.1ubuntu2 [1840 B]
358s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB]
358s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libglapi-mesa amd64 24.0.9-0ubuntu2 [40.7 kB]
358s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libx11-xcb1 amd64 2:1.8.7-1build1 [7800 B]
358s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B]
358s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B]
358s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB]
358s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B]
358s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB]
358s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
358s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B]
358s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB]
358s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB]
358s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B]
358s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B]
358s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 libvulkan1 amd64 1.3.283.0-1 [143 kB]
358s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-12 [26.2 MB]
359s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libgl1-mesa-dri amd64 24.0.9-0ubuntu2 [8937 kB]
359s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 libglx-mesa0 amd64 24.0.9-0ubuntu2 [151 kB]
359s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB]
359s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB]
359s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB]
359s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 x11proto-dev all 2024.1-1 [606 kB]
359s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 libxau-dev amd64 1:1.0.9-1build6 [9570 B]
359s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu6 [26.5 kB]
359s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB]
359s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb1-dev amd64 1.17.0-2 [86.4 kB]
359s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libx11-dev amd64 2:1.8.7-1build1 [732 kB]
359s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 libglx-dev amd64 1.7.0-1build1 [14.2 kB]
359s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 libgl-dev amd64 1.7.0-1build1 [102 kB]
359s Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB]
359s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 libglu1-mesa amd64 9.0.2-1.1build1 [152 kB]
359s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 libopengl-dev amd64 1.7.0-1build1 [3454 B]
359s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1build1 [237 kB]
359s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 libice-dev amd64 2:1.0.10-1build3 [51.0 kB]
359s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB]
359s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 libncbi6t64 amd64 6.1.20170106+dfsg2-2 [4361 kB]
359s Get:66 http://ftpmaster.internal/ubuntu oracular/universe amd64 libncbi6-dev amd64 6.1.20170106+dfsg2-2 [5977 kB]
359s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 libsm-dev amd64 2:1.2.3-1build3 [17.8 kB]
359s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender-dev amd64 1:0.9.10-1.1build1 [26.3 kB]
359s Get:69 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft-dev amd64 2.3.6-1build1 [64.3 kB]
359s Get:70 http://ftpmaster.internal/ubuntu oracular/main amd64 libxt-dev amd64 1:1.2.1-1.2build1 [394 kB]
359s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 uil amd64 2.3.8-3.1build1 [7504 B]
359s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmotif-dev amd64 2.3.8-3.1build1 [2596 kB]
359s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 libvibrant6t64 amd64 6.1.20170106+dfsg2-2 [1352 kB]
359s Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 libxext-dev amd64 2:1.3.4-1build2 [83.5 kB]
359s Get:75 http://ftpmaster.internal/ubuntu oracular/main amd64 libxmu-headers all 2:1.1.3-3build2 [53.0 kB]
359s Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 libxmu-dev amd64 2:1.1.3-3build2 [55.4 kB]
359s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 libvibrant6-dev amd64 6.1.20170106+dfsg2-2 [1652 kB]
359s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-cn3d amd64 3.0.20170106+dfsg2-2 [10.1 kB]
359s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-rrna-data all 6.1.20170106+dfsg2-2 [46.3 MB]
360s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-tools-bin amd64 6.1.20170106+dfsg2-2 [1893 kB]
360s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-tools-x11 amd64 6.1.20170106+dfsg2-2 [1037 kB]
360s Fetched 113 MB in 2s (75.0 MB/s)
360s Selecting previously unselected package x11-common.
360s (Reading database ... 
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360s Preparing to unpack .../x11-common_1%3a7.7+23ubuntu3_all.deb ...
360s Unpacking x11-common (1:7.7+23ubuntu3) ...
360s Setting up x11-common (1:7.7+23ubuntu3) ...
361s Selecting previously unselected package libmotif-common.
361s (Reading database ... 
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(Reading database ... 74515 files and directories currently installed.)
361s Preparing to unpack .../00-libmotif-common_2.3.8-3.1build1_all.deb ...
361s Unpacking libmotif-common (2.3.8-3.1build1) ...
361s Selecting previously unselected package libxrender1:amd64.
361s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
361s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
361s Selecting previously unselected package libxft2:amd64.
361s Preparing to unpack .../02-libxft2_2.3.6-1build1_amd64.deb ...
361s Unpacking libxft2:amd64 (2.3.6-1build1) ...
361s Selecting previously unselected package libice6:amd64.
361s Preparing to unpack .../03-libice6_2%3a1.0.10-1build3_amd64.deb ...
361s Unpacking libice6:amd64 (2:1.0.10-1build3) ...
361s Selecting previously unselected package libsm6:amd64.
361s Preparing to unpack .../04-libsm6_2%3a1.2.3-1build3_amd64.deb ...
361s Unpacking libsm6:amd64 (2:1.2.3-1build3) ...
361s Selecting previously unselected package libxt6t64:amd64.
361s Preparing to unpack .../05-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ...
361s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ...
361s Selecting previously unselected package libxmu6:amd64.
361s Preparing to unpack .../06-libxmu6_2%3a1.1.3-3build2_amd64.deb ...
361s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ...
361s Selecting previously unselected package libxm4:amd64.
361s Preparing to unpack .../07-libxm4_2.3.8-3.1build1_amd64.deb ...
361s Unpacking libxm4:amd64 (2.3.8-3.1build1) ...
361s Selecting previously unselected package libmrm4:amd64.
361s Preparing to unpack .../08-libmrm4_2.3.8-3.1build1_amd64.deb ...
361s Unpacking libmrm4:amd64 (2.3.8-3.1build1) ...
361s Selecting previously unselected package libuil4:amd64.
361s Preparing to unpack .../09-libuil4_2.3.8-3.1build1_amd64.deb ...
361s Unpacking libuil4:amd64 (2.3.8-3.1build1) ...
361s Selecting previously unselected package libbrotli-dev:amd64.
361s Preparing to unpack .../10-libbrotli-dev_1.1.0-2build2_amd64.deb ...
361s Unpacking libbrotli-dev:amd64 (1.1.0-2build2) ...
361s Selecting previously unselected package libbz2-dev:amd64.
361s Preparing to unpack .../11-libbz2-dev_1.0.8-5.1_amd64.deb ...
361s Unpacking libbz2-dev:amd64 (1.0.8-5.1) ...
361s Selecting previously unselected package libdrm-amdgpu1:amd64.
361s Preparing to unpack .../12-libdrm-amdgpu1_2.4.121-2_amd64.deb ...
361s Unpacking libdrm-amdgpu1:amd64 (2.4.121-2) ...
361s Selecting previously unselected package libpciaccess0:amd64.
361s Preparing to unpack .../13-libpciaccess0_0.17-3build1_amd64.deb ...
361s Unpacking libpciaccess0:amd64 (0.17-3build1) ...
361s Selecting previously unselected package libdrm-intel1:amd64.
361s Preparing to unpack .../14-libdrm-intel1_2.4.121-2_amd64.deb ...
361s Unpacking libdrm-intel1:amd64 (2.4.121-2) ...
361s Selecting previously unselected package libdrm-nouveau2:amd64.
361s Preparing to unpack .../15-libdrm-nouveau2_2.4.121-2_amd64.deb ...
361s Unpacking libdrm-nouveau2:amd64 (2.4.121-2) ...
361s Selecting previously unselected package libdrm-radeon1:amd64.
361s Preparing to unpack .../16-libdrm-radeon1_2.4.121-2_amd64.deb ...
361s Unpacking libdrm-radeon1:amd64 (2.4.121-2) ...
361s Selecting previously unselected package libexpat1-dev:amd64.
361s Preparing to unpack .../17-libexpat1-dev_2.6.2-1_amd64.deb ...
361s Unpacking libexpat1-dev:amd64 (2.6.2-1) ...
361s Selecting previously unselected package zlib1g-dev:amd64.
361s Preparing to unpack .../18-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_amd64.deb ...
361s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ...
362s Selecting previously unselected package libpng-dev:amd64.
362s Preparing to unpack .../19-libpng-dev_1.6.43-5build1_amd64.deb ...
362s Unpacking libpng-dev:amd64 (1.6.43-5build1) ...
362s Selecting previously unselected package libfreetype-dev:amd64.
362s Preparing to unpack .../20-libfreetype-dev_2.13.2+dfsg-1build3_amd64.deb ...
362s Unpacking libfreetype-dev:amd64 (2.13.2+dfsg-1build3) ...
362s Selecting previously unselected package uuid-dev:amd64.
362s Preparing to unpack .../21-uuid-dev_2.39.3-9ubuntu6_amd64.deb ...
362s Unpacking uuid-dev:amd64 (2.39.3-9ubuntu6) ...
362s Selecting previously unselected package libpkgconf3:amd64.
362s Preparing to unpack .../22-libpkgconf3_1.8.1-3_amd64.deb ...
362s Unpacking libpkgconf3:amd64 (1.8.1-3) ...
362s Selecting previously unselected package pkgconf-bin.
362s Preparing to unpack .../23-pkgconf-bin_1.8.1-3_amd64.deb ...
362s Unpacking pkgconf-bin (1.8.1-3) ...
362s Selecting previously unselected package pkgconf:amd64.
362s Preparing to unpack .../24-pkgconf_1.8.1-3_amd64.deb ...
362s Unpacking pkgconf:amd64 (1.8.1-3) ...
362s Selecting previously unselected package libfontconfig-dev:amd64.
362s Preparing to unpack .../25-libfontconfig-dev_2.15.0-1.1ubuntu2_amd64.deb ...
362s Unpacking libfontconfig-dev:amd64 (2.15.0-1.1ubuntu2) ...
362s Selecting previously unselected package libfontconfig1-dev:amd64.
362s Preparing to unpack .../26-libfontconfig1-dev_2.15.0-1.1ubuntu2_amd64.deb ...
362s Unpacking libfontconfig1-dev:amd64 (2.15.0-1.1ubuntu2) ...
362s Selecting previously unselected package libglvnd0:amd64.
362s Preparing to unpack .../27-libglvnd0_1.7.0-1build1_amd64.deb ...
362s Unpacking libglvnd0:amd64 (1.7.0-1build1) ...
362s Selecting previously unselected package libglapi-mesa:amd64.
362s Preparing to unpack .../28-libglapi-mesa_24.0.9-0ubuntu2_amd64.deb ...
362s Unpacking libglapi-mesa:amd64 (24.0.9-0ubuntu2) ...
362s Selecting previously unselected package libx11-xcb1:amd64.
362s Preparing to unpack .../29-libx11-xcb1_2%3a1.8.7-1build1_amd64.deb ...
362s Unpacking libx11-xcb1:amd64 (2:1.8.7-1build1) ...
362s Selecting previously unselected package libxcb-dri2-0:amd64.
362s Preparing to unpack .../30-libxcb-dri2-0_1.17.0-2_amd64.deb ...
362s Unpacking libxcb-dri2-0:amd64 (1.17.0-2) ...
362s Selecting previously unselected package libxcb-dri3-0:amd64.
362s Preparing to unpack .../31-libxcb-dri3-0_1.17.0-2_amd64.deb ...
362s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ...
362s Selecting previously unselected package libxcb-glx0:amd64.
362s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_amd64.deb ...
362s Unpacking libxcb-glx0:amd64 (1.17.0-2) ...
362s Selecting previously unselected package libxcb-present0:amd64.
362s Preparing to unpack .../33-libxcb-present0_1.17.0-2_amd64.deb ...
362s Unpacking libxcb-present0:amd64 (1.17.0-2) ...
362s Selecting previously unselected package libxcb-randr0:amd64.
362s Preparing to unpack .../34-libxcb-randr0_1.17.0-2_amd64.deb ...
362s Unpacking libxcb-randr0:amd64 (1.17.0-2) ...
362s Selecting previously unselected package libxcb-shm0:amd64.
362s Preparing to unpack .../35-libxcb-shm0_1.17.0-2_amd64.deb ...
362s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
362s Selecting previously unselected package libxcb-sync1:amd64.
362s Preparing to unpack .../36-libxcb-sync1_1.17.0-2_amd64.deb ...
362s Unpacking libxcb-sync1:amd64 (1.17.0-2) ...
362s Selecting previously unselected package libxcb-xfixes0:amd64.
362s Preparing to unpack .../37-libxcb-xfixes0_1.17.0-2_amd64.deb ...
362s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ...
362s Selecting previously unselected package libxfixes3:amd64.
362s Preparing to unpack .../38-libxfixes3_1%3a6.0.0-2build1_amd64.deb ...
362s Unpacking libxfixes3:amd64 (1:6.0.0-2build1) ...
362s Selecting previously unselected package libxshmfence1:amd64.
362s Preparing to unpack .../39-libxshmfence1_1.3-1build5_amd64.deb ...
362s Unpacking libxshmfence1:amd64 (1.3-1build5) ...
362s Selecting previously unselected package libxxf86vm1:amd64.
362s Preparing to unpack .../40-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ...
362s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ...
362s Selecting previously unselected package libvulkan1:amd64.
362s Preparing to unpack .../41-libvulkan1_1.3.283.0-1_amd64.deb ...
362s Unpacking libvulkan1:amd64 (1.3.283.0-1) ...
362s Selecting previously unselected package libllvm17t64:amd64.
362s Preparing to unpack .../42-libllvm17t64_1%3a17.0.6-12_amd64.deb ...
362s Unpacking libllvm17t64:amd64 (1:17.0.6-12) ...
363s Selecting previously unselected package libgl1-mesa-dri:amd64.
363s Preparing to unpack .../43-libgl1-mesa-dri_24.0.9-0ubuntu2_amd64.deb ...
363s Unpacking libgl1-mesa-dri:amd64 (24.0.9-0ubuntu2) ...
363s Selecting previously unselected package libglx-mesa0:amd64.
363s Preparing to unpack .../44-libglx-mesa0_24.0.9-0ubuntu2_amd64.deb ...
363s Unpacking libglx-mesa0:amd64 (24.0.9-0ubuntu2) ...
363s Selecting previously unselected package libglx0:amd64.
363s Preparing to unpack .../45-libglx0_1.7.0-1build1_amd64.deb ...
363s Unpacking libglx0:amd64 (1.7.0-1build1) ...
363s Selecting previously unselected package libgl1:amd64.
363s Preparing to unpack .../46-libgl1_1.7.0-1build1_amd64.deb ...
363s Unpacking libgl1:amd64 (1.7.0-1build1) ...
363s Selecting previously unselected package xorg-sgml-doctools.
363s Preparing to unpack .../47-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ...
363s Unpacking xorg-sgml-doctools (1:1.11-1.1) ...
363s Selecting previously unselected package x11proto-dev.
363s Preparing to unpack .../48-x11proto-dev_2024.1-1_all.deb ...
363s Unpacking x11proto-dev (2024.1-1) ...
363s Selecting previously unselected package libxau-dev:amd64.
363s Preparing to unpack .../49-libxau-dev_1%3a1.0.9-1build6_amd64.deb ...
363s Unpacking libxau-dev:amd64 (1:1.0.9-1build6) ...
363s Selecting previously unselected package libxdmcp-dev:amd64.
363s Preparing to unpack .../50-libxdmcp-dev_1%3a1.1.3-0ubuntu6_amd64.deb ...
363s Unpacking libxdmcp-dev:amd64 (1:1.1.3-0ubuntu6) ...
363s Selecting previously unselected package xtrans-dev.
363s Preparing to unpack .../51-xtrans-dev_1.4.0-1_all.deb ...
363s Unpacking xtrans-dev (1.4.0-1) ...
363s Selecting previously unselected package libxcb1-dev:amd64.
363s Preparing to unpack .../52-libxcb1-dev_1.17.0-2_amd64.deb ...
363s Unpacking libxcb1-dev:amd64 (1.17.0-2) ...
363s Selecting previously unselected package libx11-dev:amd64.
363s Preparing to unpack .../53-libx11-dev_2%3a1.8.7-1build1_amd64.deb ...
363s Unpacking libx11-dev:amd64 (2:1.8.7-1build1) ...
363s Selecting previously unselected package libglx-dev:amd64.
363s Preparing to unpack .../54-libglx-dev_1.7.0-1build1_amd64.deb ...
363s Unpacking libglx-dev:amd64 (1.7.0-1build1) ...
363s Selecting previously unselected package libgl-dev:amd64.
363s Preparing to unpack .../55-libgl-dev_1.7.0-1build1_amd64.deb ...
363s Unpacking libgl-dev:amd64 (1.7.0-1build1) ...
363s Selecting previously unselected package libopengl0:amd64.
363s Preparing to unpack .../56-libopengl0_1.7.0-1build1_amd64.deb ...
363s Unpacking libopengl0:amd64 (1.7.0-1build1) ...
363s Selecting previously unselected package libglu1-mesa:amd64.
363s Preparing to unpack .../57-libglu1-mesa_9.0.2-1.1build1_amd64.deb ...
363s Unpacking libglu1-mesa:amd64 (9.0.2-1.1build1) ...
363s Selecting previously unselected package libopengl-dev:amd64.
364s Preparing to unpack .../58-libopengl-dev_1.7.0-1build1_amd64.deb ...
364s Unpacking libopengl-dev:amd64 (1.7.0-1build1) ...
364s Selecting previously unselected package libglu1-mesa-dev:amd64.
364s Preparing to unpack .../59-libglu1-mesa-dev_9.0.2-1.1build1_amd64.deb ...
364s Unpacking libglu1-mesa-dev:amd64 (9.0.2-1.1build1) ...
364s Selecting previously unselected package libice-dev:amd64.
364s Preparing to unpack .../60-libice-dev_2%3a1.0.10-1build3_amd64.deb ...
364s Unpacking libice-dev:amd64 (2:1.0.10-1build3) ...
364s Selecting previously unselected package ncbi-data.
364s Preparing to unpack .../61-ncbi-data_6.1.20170106+dfsg2-2_all.deb ...
364s Unpacking ncbi-data (6.1.20170106+dfsg2-2) ...
364s Selecting previously unselected package libncbi6t64:amd64.
364s Preparing to unpack .../62-libncbi6t64_6.1.20170106+dfsg2-2_amd64.deb ...
364s Unpacking libncbi6t64:amd64 (6.1.20170106+dfsg2-2) ...
364s Selecting previously unselected package libncbi6-dev:amd64.
364s Preparing to unpack .../63-libncbi6-dev_6.1.20170106+dfsg2-2_amd64.deb ...
364s Unpacking libncbi6-dev:amd64 (6.1.20170106+dfsg2-2) ...
364s Selecting previously unselected package libsm-dev:amd64.
364s Preparing to unpack .../64-libsm-dev_2%3a1.2.3-1build3_amd64.deb ...
364s Unpacking libsm-dev:amd64 (2:1.2.3-1build3) ...
364s Selecting previously unselected package libxrender-dev:amd64.
364s Preparing to unpack .../65-libxrender-dev_1%3a0.9.10-1.1build1_amd64.deb ...
364s Unpacking libxrender-dev:amd64 (1:0.9.10-1.1build1) ...
364s Selecting previously unselected package libxft-dev:amd64.
364s Preparing to unpack .../66-libxft-dev_2.3.6-1build1_amd64.deb ...
364s Unpacking libxft-dev:amd64 (2.3.6-1build1) ...
364s Selecting previously unselected package libxt-dev:amd64.
364s Preparing to unpack .../67-libxt-dev_1%3a1.2.1-1.2build1_amd64.deb ...
364s Unpacking libxt-dev:amd64 (1:1.2.1-1.2build1) ...
364s Selecting previously unselected package uil.
364s Preparing to unpack .../68-uil_2.3.8-3.1build1_amd64.deb ...
364s Unpacking uil (2.3.8-3.1build1) ...
364s Selecting previously unselected package libmotif-dev:amd64.
364s Preparing to unpack .../69-libmotif-dev_2.3.8-3.1build1_amd64.deb ...
364s Unpacking libmotif-dev:amd64 (2.3.8-3.1build1) ...
364s Selecting previously unselected package libvibrant6t64:amd64.
364s Preparing to unpack .../70-libvibrant6t64_6.1.20170106+dfsg2-2_amd64.deb ...
364s Unpacking libvibrant6t64:amd64 (6.1.20170106+dfsg2-2) ...
364s Selecting previously unselected package libxext-dev:amd64.
364s Preparing to unpack .../71-libxext-dev_2%3a1.3.4-1build2_amd64.deb ...
364s Unpacking libxext-dev:amd64 (2:1.3.4-1build2) ...
364s Selecting previously unselected package libxmu-headers.
364s Preparing to unpack .../72-libxmu-headers_2%3a1.1.3-3build2_all.deb ...
364s Unpacking libxmu-headers (2:1.1.3-3build2) ...
365s Selecting previously unselected package libxmu-dev:amd64.
365s Preparing to unpack .../73-libxmu-dev_2%3a1.1.3-3build2_amd64.deb ...
365s Unpacking libxmu-dev:amd64 (2:1.1.3-3build2) ...
365s Selecting previously unselected package libvibrant6-dev:amd64.
365s Preparing to unpack .../74-libvibrant6-dev_6.1.20170106+dfsg2-2_amd64.deb ...
365s Unpacking libvibrant6-dev:amd64 (6.1.20170106+dfsg2-2) ...
365s Selecting previously unselected package ncbi-cn3d.
365s Preparing to unpack .../75-ncbi-cn3d_3.0.20170106+dfsg2-2_amd64.deb ...
365s Unpacking ncbi-cn3d (3.0.20170106+dfsg2-2) ...
365s Selecting previously unselected package ncbi-rrna-data.
365s Preparing to unpack .../76-ncbi-rrna-data_6.1.20170106+dfsg2-2_all.deb ...
365s Unpacking ncbi-rrna-data (6.1.20170106+dfsg2-2) ...
367s Selecting previously unselected package ncbi-tools-bin.
367s Preparing to unpack .../77-ncbi-tools-bin_6.1.20170106+dfsg2-2_amd64.deb ...
367s Unpacking ncbi-tools-bin (6.1.20170106+dfsg2-2) ...
367s Selecting previously unselected package ncbi-tools-x11.
367s Preparing to unpack .../78-ncbi-tools-x11_6.1.20170106+dfsg2-2_amd64.deb ...
367s Unpacking ncbi-tools-x11 (6.1.20170106+dfsg2-2) ...
367s Selecting previously unselected package autopkgtest-satdep.
367s Preparing to unpack .../79-1-autopkgtest-satdep.deb ...
367s Unpacking autopkgtest-satdep (0) ...
367s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ...
367s Setting up ncbi-data (6.1.20170106+dfsg2-2) ...
367s Setting up libx11-xcb1:amd64 (2:1.8.7-1build1) ...
367s Setting up libice6:amd64 (2:1.0.10-1build3) ...
367s Setting up libpciaccess0:amd64 (0.17-3build1) ...
367s Setting up libdrm-nouveau2:amd64 (2.4.121-2) ...
367s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ...
367s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
367s Setting up libdrm-radeon1:amd64 (2.4.121-2) ...
367s Setting up libglvnd0:amd64 (1.7.0-1build1) ...
367s Setting up libxcb-glx0:amd64 (1.17.0-2) ...
367s Setting up libdrm-intel1:amd64 (2.4.121-2) ...
367s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
367s Setting up libmotif-common (2.3.8-3.1build1) ...
367s Setting up libopengl0:amd64 (1.7.0-1build1) ...
367s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ...
367s Setting up libxcb-present0:amd64 (1.17.0-2) ...
367s Setting up libncbi6t64:amd64 (6.1.20170106+dfsg2-2) ...
367s Setting up xtrans-dev (1.4.0-1) ...
367s Setting up libpkgconf3:amd64 (1.8.1-3) ...
367s Setting up libllvm17t64:amd64 (1:17.0.6-12) ...
370s Setting up libexpat1-dev:amd64 (2.6.2-1) ...
370s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ...
370s Setting up libxcb-sync1:amd64 (1.17.0-2) ...
370s Setting up uuid-dev:amd64 (2.39.3-9ubuntu6) ...
370s Setting up pkgconf-bin (1.8.1-3) ...
370s Setting up libglapi-mesa:amd64 (24.0.9-0ubuntu2) ...
370s Setting up libvulkan1:amd64 (1.3.283.0-1) ...
370s Setting up libxcb-dri2-0:amd64 (1.17.0-2) ...
370s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ...
370s Setting up ncbi-tools-bin (6.1.20170106+dfsg2-2) ...
370s Setting up libxshmfence1:amd64 (1.3-1build5) ...
370s Setting up libxcb-randr0:amd64 (1.17.0-2) ...
370s Setting up xorg-sgml-doctools (1:1.11-1.1) ...
370s Setting up libglu1-mesa:amd64 (9.0.2-1.1build1) ...
370s Setting up libopengl-dev:amd64 (1.7.0-1build1) ...
370s Setting up libsm6:amd64 (2:1.2.3-1build3) ...
370s Setting up libbrotli-dev:amd64 (1.1.0-2build2) ...
370s Setting up ncbi-rrna-data (6.1.20170106+dfsg2-2) ...
370s Setting up libdrm-amdgpu1:amd64 (2.4.121-2) ...
370s Setting up libbz2-dev:amd64 (1.0.8-5.1) ...
370s Setting up x11proto-dev (2024.1-1) ...
370s Setting up libncbi6-dev:amd64 (6.1.20170106+dfsg2-2) ...
370s Setting up libxft2:amd64 (2.3.6-1build1) ...
370s Setting up libxau-dev:amd64 (1:1.0.9-1build6) ...
370s Setting up libice-dev:amd64 (2:1.0.10-1build3) ...
370s Setting up libsm-dev:amd64 (2:1.2.3-1build3) ...
370s Setting up libgl1-mesa-dri:amd64 (24.0.9-0ubuntu2) ...
370s Setting up libpng-dev:amd64 (1.6.43-5build1) ...
370s Setting up pkgconf:amd64 (1.8.1-3) ...
370s Setting up libfreetype-dev:amd64 (2.13.2+dfsg-1build3) ...
370s Setting up libxdmcp-dev:amd64 (1:1.1.3-0ubuntu6) ...
370s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
370s Setting up libxmu6:amd64 (2:1.1.3-3build2) ...
370s Setting up libglx-mesa0:amd64 (24.0.9-0ubuntu2) ...
370s Setting up libxcb1-dev:amd64 (1.17.0-2) ...
370s Setting up libglx0:amd64 (1.7.0-1build1) ...
370s Setting up libfontconfig-dev:amd64 (2.15.0-1.1ubuntu2) ...
370s Setting up libx11-dev:amd64 (2:1.8.7-1build1) ...
370s Setting up libgl1:amd64 (1.7.0-1build1) ...
370s Setting up libxt-dev:amd64 (1:1.2.1-1.2build1) ...
370s Setting up libxext-dev:amd64 (2:1.3.4-1build2) ...
370s Setting up libglx-dev:amd64 (1.7.0-1build1) ...
370s Setting up libxrender-dev:amd64 (1:0.9.10-1.1build1) ...
370s Setting up libgl-dev:amd64 (1.7.0-1build1) ...
370s Setting up libxm4:amd64 (2.3.8-3.1build1) ...
370s Setting up libxft-dev:amd64 (2.3.6-1build1) ...
370s Setting up libxmu-headers (2:1.1.3-3build2) ...
370s Setting up libfontconfig1-dev:amd64 (2.15.0-1.1ubuntu2) ...
370s Setting up libxmu-dev:amd64 (2:1.1.3-3build2) ...
370s Setting up libvibrant6t64:amd64 (6.1.20170106+dfsg2-2) ...
370s Setting up libmrm4:amd64 (2.3.8-3.1build1) ...
370s Setting up libglu1-mesa-dev:amd64 (9.0.2-1.1build1) ...
370s Setting up libuil4:amd64 (2.3.8-3.1build1) ...
370s Setting up uil (2.3.8-3.1build1) ...
370s Setting up libmotif-dev:amd64 (2.3.8-3.1build1) ...
370s Setting up ncbi-cn3d (3.0.20170106+dfsg2-2) ...
370s update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode
370s Setting up ncbi-tools-x11 (6.1.20170106+dfsg2-2) ...
370s Setting up libvibrant6-dev:amd64 (6.1.20170106+dfsg2-2) ...
370s Setting up autopkgtest-satdep (0) ...
370s Processing triggers for man-db (2.12.1-2) ...
370s Processing triggers for libc-bin (2.39-3.1ubuntu3) ...
395s (Reading database ... 77909 files and directories currently installed.)
395s Removing autopkgtest-satdep (0) ...
397s autopkgtest [17:23:26]: test run-unit-test: [-----------------------
398s ---asn2asn test---
398s ---asn2all test---
399s ---asn2fsa test---
399s ---asn2gb test---
400s ---asn2idx test---
400s ---asn2xml test---
401s ---cleanasn test---
401s ---gene2xml test---
402s ---vecscreen test---
406s ---asndisc test---
409s ---asnval test---
410s ---asnmacro test---
413s ---asntool test---
413s ---indexpub test---
413s ---getpub test---
413s ---getmesh test---
413s ---debruijn test---
413s ---gil2bin test---
413s ---makeset test---
413s ---nps2gps test---
413s [nps2gps] Processing X66994.1 (idfetch_g1234.npset)
413s ---tbl2asn test---
413s ---checksub test---
413s ---fa2htgs test---
413s ---subfuse test---
413s ---trna2sap test---
413s [subfuse] Processing checksub
413s 
413s [subfuse] Processing Sc_16
413s 
413s ---trna2tbl test---
413s ---spidey test---
414s autopkgtest [17:23:43]: test run-unit-test: -----------------------]
417s autopkgtest [17:23:46]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
417s run-unit-test        PASS
425s autopkgtest [17:23:54]: @@@@@@@@@@@@@@@@@@@@ summary
425s run-unit-test        PASS
475s nova [W] Skipping flock for amd64
475s Creating nova instance adt-oracular-amd64-ncbi-tools6-20240712-171648-juju-7f2275-prod-proposed-migration-environment-2-a489ec16-721b-4180-b40a-62092ac9bfb0 from image adt/ubuntu-oracular-amd64-server-20240711.img (UUID 4d65b1cc-a829-44fc-a8ac-cdd52093f9db)...