0s autopkgtest [00:56:37]: starting date and time: 2024-06-08 00:56:37+0000
  0s autopkgtest [00:56:37]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod'
  0s autopkgtest [00:56:37]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ncko3_te/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade libpysal --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-85.secgroup --name adt-oracular-amd64-libpysal-20240608-002124-juju-7f2275-prod-proposed-migration-environment-3-3641a0eb-f9b2-481b-8841-e0b75089d501 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 96s autopkgtest [00:58:13]: testbed dpkg architecture: amd64
 96s autopkgtest [00:58:13]: testbed apt version: 2.9.3
 96s autopkgtest [00:58:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 96s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB]
 96s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [339 kB]
 96s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B]
 96s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2864 B]
 96s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB]
 96s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [66.4 kB]
 96s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [38.1 kB]
 96s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [9340 B]
 96s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [27.4 kB]
 96s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [315 kB]
 96s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [126 kB]
 96s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [11.7 kB]
 96s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3368 B]
 96s Fetched 1102 kB in 0s (4102 kB/s)
 96s Reading package lists...
 98s Reading package lists...
 98s Building dependency tree...
 98s Reading state information...
 99s Calculating upgrade...
 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 99s Reading package lists...
 99s Building dependency tree...
 99s Reading state information...
100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
100s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
100s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
100s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
100s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
101s Reading package lists...
101s Reading package lists...
102s Building dependency tree...
102s Reading state information...
102s Calculating upgrade...
102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
102s Reading package lists...
103s Building dependency tree...
103s Reading state information...
103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
104s autopkgtest [00:58:21]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024
104s autopkgtest [00:58:21]: @@@@@@@@@@@@@@@@@@@@ apt-source libpysal
105s Get:1 http://ftpmaster.internal/ubuntu oracular/universe libpysal 4.10-7 (dsc) [2779 B]
105s Get:2 http://ftpmaster.internal/ubuntu oracular/universe libpysal 4.10-7 (tar) [6361 kB]
105s Get:3 http://ftpmaster.internal/ubuntu oracular/universe libpysal 4.10-7 (diff) [5304 B]
105s gpgv: Signature made Thu Jun  6 00:42:52 2024 UTC
105s gpgv:                using RSA key A8194D5D117E2D02DF30D30D07A9F562313446CD
105s gpgv: Can't check signature: No public key
105s dpkg-source: warning: cannot verify inline signature for ./libpysal_4.10-7.dsc: no acceptable signature found
105s autopkgtest [00:58:22]: testing package libpysal version 4.10-7
105s autopkgtest [00:58:22]: build not needed
106s autopkgtest [00:58:23]: test command1: preparing testbed
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
107s Starting pkgProblemResolver with broken count: 0
107s Starting 2 pkgProblemResolver with broken count: 0
107s Done
107s The following additional packages will be installed:
107s   blt fonts-lyx gdal-data gdal-plugins libaec0 libarmadillo12 libarpack2t64
107s   libblas3 libblosc1 libcfitsio10t64 libfreexl1 libfyba0t64 libgdal35
107s   libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 libgfortran5 libgif7 libgomp1
107s   libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64
107s   libhdf5-hl-100t64 libimagequant0 libjs-jquery libjs-jquery-ui libkmlbase1t64
107s   libkmldom1t64 libkmlengine1t64 liblapack3 liblbfgsb0 liblcms2-2 libltdl7
107s   libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2
107s   libogdi4.1 libopenjp2-7 libpoppler134 libpq5 libproj25 libqhull-r8.0
107s   libraqm0 librttopo1 libsnappy1v5 libspatialite8t64 libsuperlu6 libsz2
107s   libtcl8.6 libtk8.6 liburiparser1 libwebpdemux2 libwebpmux3 libxerces-c3.2t64
107s   libxft2 libxrender1 libxslt1.1 libxss1 mysql-common proj-data
107s   python-libpysal-doc python-matplotlib-data python3-all python3-appdirs
107s   python3-brotli python3-bs4 python3-click python3-click-plugins python3-cligj
107s   python3-colorama python3-contourpy python3-cycler python3-dateutil
107s   python3-decorator python3-fiona python3-fonttools python3-fs
107s   python3-geopandas python3-iniconfig python3-joblib python3-kiwisolver
107s   python3-libpysal python3-lxml python3-lz4 python3-matplotlib python3-mpmath
107s   python3-numpy python3-packaging python3-pandas python3-pandas-lib
107s   python3-pil python3-pil.imagetk python3-platformdirs python3-pluggy
107s   python3-pyproj python3-pytest python3-scipy python3-shapely python3-sklearn
107s   python3-sklearn-lib python3-soupsieve python3-sympy python3-threadpoolctl
107s   python3-tk python3-ufolib2 tk8.6-blt2.5 unicode-data unixodbc-common
107s   x11-common
107s Suggested packages:
107s   blt-demo geotiff-bin gdal-bin libgeotiff-epsg libhdf4-alt-dev hdf4-tools
107s   libjs-jquery-ui-docs liblcms2-utils odbc-postgresql tdsodbc ogdi-bin
107s   proj-bin tcl8.6 tk8.6 python-cycler-doc python-lxml-doc cm-super-minimal
107s   dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3
107s   librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject
107s   python3-pyqt5 python3-sip python3-tornado texlive-extra-utils
107s   texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran
107s   python-numpy-doc python3-dev python-pandas-doc python3-statsmodels
107s   python-pil-doc python-scipy-doc python3-dap python-sklearn-doc
107s   texlive-fonts-extra python-sympy-doc tix python3-tk-dbg
107s Recommended packages:
107s   proj-bin javascript-common poppler-data python3-geopy python3-psycopg2
107s   python3-rtree python3-simplejson python3-psutil python3-networkx
107s   python3-numba python3-sqlalchemy python3-xarray python3-zstd
107s   python3-cssselect python3-html5lib python3-bottleneck python3-numexpr
107s   python3-odf python3-openpyxl python3-tables python3-olefile g++
107s   | c++-compiler isympy-common
107s The following NEW packages will be installed:
107s   autopkgtest-satdep blt fonts-lyx gdal-data gdal-plugins libaec0
107s   libarmadillo12 libarpack2t64 libblas3 libblosc1 libcfitsio10t64 libfreexl1
107s   libfyba0t64 libgdal35 libgeos-c1t64 libgeos3.12.1t64 libgeotiff5
107s   libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt
107s   libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libjs-jquery
107s   libjs-jquery-ui libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3
107s   liblbfgsb0 liblcms2-2 libltdl7 libminizip1t64 libmysqlclient21
107s   libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpoppler134
107s   libpq5 libproj25 libqhull-r8.0 libraqm0 librttopo1 libsnappy1v5
107s   libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libtk8.6 liburiparser1
107s   libwebpdemux2 libwebpmux3 libxerces-c3.2t64 libxft2 libxrender1 libxslt1.1
107s   libxss1 mysql-common proj-data python-libpysal-doc python-matplotlib-data
107s   python3-all python3-appdirs python3-brotli python3-bs4 python3-click
107s   python3-click-plugins python3-cligj python3-colorama python3-contourpy
107s   python3-cycler python3-dateutil python3-decorator python3-fiona
107s   python3-fonttools python3-fs python3-geopandas python3-iniconfig
107s   python3-joblib python3-kiwisolver python3-libpysal python3-lxml python3-lz4
107s   python3-matplotlib python3-mpmath python3-numpy python3-packaging
107s   python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
107s   python3-platformdirs python3-pluggy python3-pyproj python3-pytest
107s   python3-scipy python3-shapely python3-sklearn python3-sklearn-lib
107s   python3-soupsieve python3-sympy python3-threadpoolctl python3-tk
107s   python3-ufolib2 tk8.6-blt2.5 unicode-data unixodbc-common x11-common
107s 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded.
107s Need to get 103 MB/103 MB of archives.
107s After this operation, 439 MB of additional disk space will be used.
107s Get:1 /tmp/autopkgtest.i7zLfz/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [744 B]
107s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB]
107s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
107s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
107s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
107s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
107s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB]
107s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB]
107s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B]
107s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.0-1 [171 kB]
107s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 gdal-data all 3.9.0+dfsg-1 [268 kB]
107s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 gdal-plugins amd64 3.9.0+dfsg-1 [25.1 kB]
107s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
107s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB]
107s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB]
107s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB]
107s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libarpack2t64 amd64 3.9.1-1.1build2 [106 kB]
107s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1build1 [180 kB]
107s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libarmadillo12 amd64 1:12.8.2+dfsg-1 [106 kB]
107s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB]
107s Get:21 http://ftpmaster.internal/ubuntu oracular/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB]
107s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcfitsio10t64 amd64 4.3.1-1.1build2 [528 kB]
107s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB]
107s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libminizip1t64 amd64 1:1.3.dfsg-3.1ubuntu2 [22.2 kB]
107s Get:25 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB]
107s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgeos3.12.1t64 amd64 3.12.1-3build1 [849 kB]
107s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgeos-c1t64 amd64 3.12.1-3build1 [94.5 kB]
107s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 proj-data all 9.4.1-1 [7892 kB]
108s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libproj25 amd64 9.4.1-1 [1398 kB]
108s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB]
108s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB]
108s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
108s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB]
108s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB]
108s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 liburiparser1 amd64 0.9.7+dfsg-2build1 [35.8 kB]
108s Get:36 http://ftpmaster.internal/ubuntu oracular/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB]
108s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB]
108s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB]
108s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 mysql-common all 5.8+1.1.0build1 [6746 B]
108s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libmysqlclient21 amd64 8.0.37-1 [1254 kB]
108s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB]
108s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6 [472 kB]
108s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 libltdl7 amd64 2.4.7-7build1 [40.3 kB]
108s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 libodbc2 amd64 2.3.12-1ubuntu1 [158 kB]
108s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 unixodbc-common all 2.3.12-1ubuntu1 [8796 B]
108s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libodbcinst2 amd64 2.3.12-1ubuntu1 [30.7 kB]
108s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 libogdi4.1 amd64 4.1.1+ds-4 [226 kB]
108s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB]
108s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB]
108s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 libpoppler134 amd64 24.02.0-1ubuntu10 [1113 kB]
108s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 libpq5 amd64 16.3-1 [140 kB]
108s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
108s Get:53 http://ftpmaster.internal/ubuntu oracular/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB]
108s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB]
108s Get:55 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3 [917 kB]
108s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgdal35 amd64 3.9.0+dfsg-1 [8852 kB]
108s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB]
108s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2build1 [73.0 kB]
108s Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB]
108s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
108s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
108s Get:62 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
108s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
108s Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB]
108s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB]
108s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB]
108s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB]
108s Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-libpysal-doc all 4.10-7 [1624 kB]
108s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB]
108s Get:70 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B]
108s Get:71 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB]
108s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB]
108s Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-soupsieve all 2.5-1 [33.0 kB]
108s Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bs4 all 4.12.3-1 [109 kB]
108s Get:75 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB]
108s Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB]
108s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-click-plugins all 1.1.1-4 [9288 B]
108s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cligj all 0.7.2-2 [7788 B]
108s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB]
108s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB]
108s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B]
108s Get:82 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB]
108s Get:83 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
108s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fiona amd64 1.9.6-1build1 [599 kB]
108s Get:85 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.11.4-10 [15.5 MB]
108s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
108s Get:87 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB]
108s Get:88 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB]
108s Get:89 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB]
108s Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB]
108s Get:91 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB]
108s Get:92 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
108s Get:93 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB]
108s Get:94 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB]
108s Get:95 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB]
108s Get:96 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pyproj amd64 3.6.1-4 [399 kB]
108s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-shapely amd64 2.0.4-1 [302 kB]
108s Get:98 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB]
108s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-geopandas all 0.14.4-1 [1643 kB]
108s Get:100 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
108s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-joblib all 1.3.2-2 [208 kB]
108s Get:102 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB]
108s Get:103 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-platformdirs all 4.2.1-1 [16.3 kB]
108s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
108s Get:105 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-1 [3795 kB]
108s Get:106 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn all 1.4.2+dfsg-1 [2261 kB]
108s Get:107 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-libpysal all 4.10-7 [256 kB]
108s Get:108 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB]
108s Get:109 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB]
108s Get:110 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B]
108s Get:111 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB]
109s Get:112 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
109s Get:113 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pytest all 8.2.2-1ubuntu1 [250 kB]
109s Fetched 103 MB in 1s (87.8 MB/s)
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109s Preparing to unpack .../000-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ...
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109s Selecting previously unselected package libxrender1:amd64.
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109s Selecting previously unselected package x11-common.
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109s Selecting previously unselected package libxss1:amd64.
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109s Selecting previously unselected package libtk8.6:amd64.
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110s Selecting previously unselected package tk8.6-blt2.5.
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110s Selecting previously unselected package libminizip1t64:amd64.
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110s Selecting previously unselected package libfreexl1:amd64.
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110s Selecting previously unselected package libgeos3.12.1t64:amd64.
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110s Selecting previously unselected package libgeotiff5:amd64.
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110s Selecting previously unselected package libgif7:amd64.
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111s Selecting previously unselected package mysql-common.
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111s Selecting previously unselected package libmysqlclient21:amd64.
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111s Selecting previously unselected package libhdf5-hl-100t64:amd64.
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111s Selecting previously unselected package libnetcdf19t64:amd64.
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111s Selecting previously unselected package libodbc2:amd64.
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111s Selecting previously unselected package unixodbc-common.
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111s Selecting previously unselected package libodbcinst2:amd64.
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111s Selecting previously unselected package libogdi4.1:amd64.
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111s Selecting previously unselected package liblcms2-2:amd64.
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111s Selecting previously unselected package libpoppler134:amd64.
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111s Selecting previously unselected package libpq5:amd64.
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111s Unpacking libpq5:amd64 (16.3-1) ...
111s Selecting previously unselected package libqhull-r8.0:amd64.
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111s Selecting previously unselected package librttopo1:amd64.
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111s Selecting previously unselected package libspatialite8t64:amd64.
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111s Selecting previously unselected package libxerces-c3.2t64:amd64.
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111s Selecting previously unselected package libgdal35:amd64.
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112s Selecting previously unselected package libgomp1:amd64.
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112s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ...
112s Selecting previously unselected package libgraphite2-3:amd64.
112s Preparing to unpack .../056-libgraphite2-3_1.3.14-2build1_amd64.deb ...
112s Unpacking libgraphite2-3:amd64 (1.3.14-2build1) ...
112s Selecting previously unselected package libharfbuzz0b:amd64.
112s Preparing to unpack .../057-libharfbuzz0b_8.3.0-2build2_amd64.deb ...
112s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ...
112s Selecting previously unselected package libimagequant0:amd64.
112s Preparing to unpack .../058-libimagequant0_2.18.0-1build1_amd64.deb ...
112s Unpacking libimagequant0:amd64 (2.18.0-1build1) ...
112s Selecting previously unselected package libjs-jquery.
112s Preparing to unpack .../059-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
112s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
112s Selecting previously unselected package libjs-jquery-ui.
112s Preparing to unpack .../060-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
112s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
112s Selecting previously unselected package liblbfgsb0:amd64.
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112s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
112s Selecting previously unselected package libraqm0:amd64.
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112s Unpacking libraqm0:amd64 (0.10.1-1build1) ...
112s Selecting previously unselected package libwebpdemux2:amd64.
112s Preparing to unpack .../063-libwebpdemux2_1.4.0-0.1_amd64.deb ...
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112s Selecting previously unselected package libwebpmux3:amd64.
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112s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ...
112s Selecting previously unselected package libxslt1.1:amd64.
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112s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ...
112s Selecting previously unselected package python-libpysal-doc.
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112s Unpacking python-libpysal-doc (4.10-7) ...
112s Selecting previously unselected package python-matplotlib-data.
112s Preparing to unpack .../067-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ...
112s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ...
112s Selecting previously unselected package python3-all.
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112s Unpacking python3-all (3.12.3-0ubuntu1) ...
112s Selecting previously unselected package python3-appdirs.
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112s Unpacking python3-appdirs (1.4.4-4) ...
112s Selecting previously unselected package python3-brotli.
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112s Selecting previously unselected package python3-soupsieve.
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112s Unpacking python3-soupsieve (2.5-1) ...
112s Selecting previously unselected package python3-bs4.
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112s Unpacking python3-bs4 (4.12.3-1) ...
112s Selecting previously unselected package python3-colorama.
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112s Unpacking python3-colorama (0.4.6-4) ...
112s Selecting previously unselected package python3-click.
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112s Unpacking python3-click (8.1.7-1) ...
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112s Selecting previously unselected package python3-cligj.
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112s Unpacking python3-cligj (0.7.2-2) ...
112s Selecting previously unselected package python3-numpy.
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112s Unpacking python3-numpy (1:1.26.4+ds-10) ...
113s Selecting previously unselected package python3-contourpy.
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113s Unpacking python3-contourpy (1.0.7-3) ...
113s Selecting previously unselected package python3-cycler.
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113s Unpacking python3-cycler (0.12.1-1) ...
113s Selecting previously unselected package python3-dateutil.
113s Preparing to unpack .../080-python3-dateutil_2.9.0-2_all.deb ...
113s Unpacking python3-dateutil (2.9.0-2) ...
113s Selecting previously unselected package python3-decorator.
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113s Unpacking python3-decorator (5.1.1-5) ...
113s Selecting previously unselected package python3-fiona.
113s Preparing to unpack .../082-python3-fiona_1.9.6-1build1_amd64.deb ...
113s Unpacking python3-fiona (1.9.6-1build1) ...
113s Selecting previously unselected package python3-scipy.
113s Preparing to unpack .../083-python3-scipy_1.11.4-10_amd64.deb ...
113s Unpacking python3-scipy (1.11.4-10) ...
113s Selecting previously unselected package python3-ufolib2.
113s Preparing to unpack .../084-python3-ufolib2_0.16.0+dfsg1-1_all.deb ...
113s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
113s Selecting previously unselected package python3-mpmath.
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113s Unpacking python3-mpmath (1.3.0-1) ...
113s Selecting previously unselected package python3-sympy.
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114s Selecting previously unselected package python3-fs.
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116s Setting up python3-iniconfig (1.1.1-2) ...
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116s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
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117s Setting up python3-all (3.12.3-0ubuntu1) ...
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118s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
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119s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ...
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120s Setting up gdal-plugins:amd64 (3.9.0+dfsg-1) ...
120s Setting up python3-sympy (1.12-8) ...
126s Setting up libodbcinst2:amd64 (2.3.12-1ubuntu1) ...
126s Setting up liblapack3:amd64 (3.12.0-3build1) ...
126s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
126s Setting up libxft2:amd64 (2.3.6-1build1) ...
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126s Setting up python3-pytest (8.2.2-1ubuntu1) ...
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127s Setting up python3-bs4 (4.12.3-1) ...
127s Setting up python3-fs (2.4.16-4) ...
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127s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
127s Setting up libraqm0:amd64 (0.10.1-1build1) ...
127s Setting up python3-numpy (1:1.26.4+ds-10) ...
129s Setting up libhdf4-0-alt:amd64 (4.3.0-1) ...
129s Setting up libfreexl1:amd64 (2.0.0-1build2) ...
129s Setting up python3-lxml:amd64 (5.2.1-1) ...
129s Setting up python3-contourpy (1.0.7-3) ...
129s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ...
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133s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-1) ...
133s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ...
133s Setting up libkmlengine1t64:amd64 (1.3.0-12build1) ...
133s Setting up python3-pyproj (3.6.1-4) ...
134s Setting up python3-pil:amd64 (10.3.0-2) ...
134s Setting up python3-pandas (2.1.4+dfsg-8) ...
139s Setting up python3-pil.imagetk:amd64 (10.3.0-2) ...
139s Setting up python3-sklearn (1.4.2+dfsg-1) ...
141s Setting up libgdal35:amd64 (3.9.0+dfsg-1) ...
141s Setting up python3-fiona (1.9.6-1build1) ...
142s Setting up python3-geopandas (0.14.4-1) ...
142s Setting up python3-libpysal (4.10-7) ...
143s Setting up python3-fonttools (4.46.0-1build2) ...
144s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
144s Setting up python3-matplotlib (3.6.3-2ubuntu1) ...
145s Setting up autopkgtest-satdep (0) ...
145s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
145s Processing triggers for man-db (2.12.1-1) ...
152s (Reading database ... 85415 files and directories currently installed.)
152s Removing autopkgtest-satdep (0) ...
152s autopkgtest [00:59:09]: test command1: python3 -m pytest -v -p no:warnings libpysal/io/iohandlers/tests/
152s autopkgtest [00:59:09]: test command1: [-----------------------
152s ============================= test session starts ==============================
152s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 -- /usr/bin/python3
152s cachedir: .pytest_cache
152s rootdir: /tmp/autopkgtest.i7zLfz/build.mb9/src
152s configfile: pyproject.toml
154s collecting ... collected 73 items
154s 
154s libpysal/io/iohandlers/tests/test_arcgis_dbf.py::TesttestArcGISDbfIO::test_close PASSED [  1%]
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154s libpysal/io/iohandlers/tests/test_arcgis_txt.py::TesttestArcGISTextIO::test_close PASSED [ 12%]
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154s libpysal/io/iohandlers/tests/test_csvWrapper.py::TesttestCsvWrapper::test_len PASSED [ 17%]
154s libpysal/io/iohandlers/tests/test_csvWrapper.py::TesttestCsvWrapper::test_tell PASSED [ 19%]
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154s libpysal/io/iohandlers/tests/test_csvWrapper.py::TesttestCsvWrapper::test_by_col PASSED [ 24%]
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154s libpysal/io/iohandlers/tests/test_dat.py::TesttestDatIO::test_close PASSED [ 27%]
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154s libpysal/io/iohandlers/tests/test_db.py::TestSqliteReader::test_deserialize SKIPPED [ 32%]
154s libpysal/io/iohandlers/tests/test_gal.py::TesttestGalIO::test___init__ PASSED [ 34%]
154s libpysal/io/iohandlers/tests/test_gal.py::TesttestGalIO::test_close PASSED [ 35%]
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154s libpysal/io/iohandlers/tests/test_geobugs_txt.py::TesttestGeoBUGSTextIO::test_close PASSED [ 41%]
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154s libpysal/io/iohandlers/tests/test_geoda_txt.py::TesttestGeoDaTxtReader::test___init__ PASSED [ 46%]
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154s libpysal/io/iohandlers/tests/test_geoda_txt.py::TesttestGeoDaTxtReader::test_close PASSED [ 49%]
154s libpysal/io/iohandlers/tests/test_gwt.py::TesttestGwtIO::test_close PASSED [ 50%]
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154s libpysal/io/iohandlers/tests/test_mat.py::TesttestMatIO::test_close PASSED [ 56%]
154s libpysal/io/iohandlers/tests/test_mat.py::TesttestMatIO::test_read PASSED [ 57%]
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154s libpysal/io/iohandlers/tests/test_mtx.py::TesttestMtxIO::test_close PASSED [ 61%]
154s libpysal/io/iohandlers/tests/test_mtx.py::TesttestMtxIO::test_read PASSED [ 63%]
154s libpysal/io/iohandlers/tests/test_mtx.py::TesttestMtxIO::test_seek PASSED [ 64%]
154s libpysal/io/iohandlers/tests/test_mtx.py::TesttestMtxIO::test_write PASSED [ 65%]
154s libpysal/io/iohandlers/tests/test_pyDbfIO.py::TesttestDBF::test_len PASSED [ 67%]
154s libpysal/io/iohandlers/tests/test_pyDbfIO.py::TesttestDBF::test_tell PASSED [ 68%]
154s libpysal/io/iohandlers/tests/test_pyDbfIO.py::TesttestDBF::test_cast PASSED [ 69%]
154s libpysal/io/iohandlers/tests/test_pyDbfIO.py::TesttestDBF::test_seek PASSED [ 71%]
154s libpysal/io/iohandlers/tests/test_pyDbfIO.py::TesttestDBF::test_read PASSED [ 72%]
154s libpysal/io/iohandlers/tests/test_pyDbfIO.py::TesttestDBF::test_random_access PASSED [ 73%]
154s libpysal/io/iohandlers/tests/test_pyDbfIO.py::TesttestDBF::test_write PASSED [ 75%]
154s libpysal/io/iohandlers/tests/test_pyDbfIO.py::TesttestDBF::test_write_nones PASSED [ 76%]
154s libpysal/io/iohandlers/tests/test_pyShpIO.py::TesttestPurePyShpWrapper::test_len PASSED [ 78%]
154s libpysal/io/iohandlers/tests/test_pyShpIO.py::TesttestPurePyShpWrapper::test_tell PASSED [ 79%]
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154s libpysal/io/iohandlers/tests/test_pyShpIO.py::TesttestPurePyShpWrapper::test_read PASSED [ 82%]
154s libpysal/io/iohandlers/tests/test_pyShpIO.py::TesttestPurePyShpWrapper::test_random_access PASSED [ 83%]
154s libpysal/io/iohandlers/tests/test_pyShpIO.py::TesttestPurePyShpWrapper::test_write PASSED [ 84%]
154s libpysal/io/iohandlers/tests/test_stata_txt.py::TesttestStataTextIO::test_close PASSED [ 86%]
154s libpysal/io/iohandlers/tests/test_stata_txt.py::TesttestStataTextIO::test_read PASSED [ 87%]
154s libpysal/io/iohandlers/tests/test_stata_txt.py::TesttestStataTextIO::test_seek PASSED [ 89%]
154s libpysal/io/iohandlers/tests/test_stata_txt.py::TesttestStataTextIO::test_write PASSED [ 90%]
154s libpysal/io/iohandlers/tests/test_wk1.py::TesttestWk1IO::test_close PASSED [ 91%]
154s libpysal/io/iohandlers/tests/test_wk1.py::TesttestWk1IO::test_read PASSED [ 93%]
154s libpysal/io/iohandlers/tests/test_wk1.py::TesttestWk1IO::test_seek PASSED [ 94%]
154s libpysal/io/iohandlers/tests/test_wk1.py::TesttestWk1IO::test_write PASSED [ 95%]
154s libpysal/io/iohandlers/tests/test_wkt.py::TesttestWKTReader::test_close PASSED [ 97%]
154s libpysal/io/iohandlers/tests/test_wkt.py::TesttestWKTReader::test_open PASSED [ 98%]
154s libpysal/io/iohandlers/tests/test_wkt.py::TesttestWKTReader::test__read PASSED [100%]
154s 
154s ======================== 72 passed, 1 skipped in 1.78s =========================
155s autopkgtest [00:59:12]: test command1: -----------------------]
155s autopkgtest [00:59:12]: test command1:  - - - - - - - - - - results - - - - - - - - - -
155s command1             PASS
155s autopkgtest [00:59:12]: @@@@@@@@@@@@@@@@@@@@ summary
155s command1             PASS
168s nova [W] Skipping flock for amd64
168s Creating nova instance adt-oracular-amd64-libpysal-20240608-002124-juju-7f2275-prod-proposed-migration-environment-3-3641a0eb-f9b2-481b-8841-e0b75089d501 from image adt/ubuntu-oracular-amd64-server-20240607.img (UUID d996b44c-1e10-4875-aeab-5b4c434d75a2)...