0s autopkgtest [17:03:59]: starting date and time: 2024-07-12 17:03:59+0000 0s autopkgtest [17:03:59]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [17:03:59]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.89s226ve/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade lucy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-105.secgroup --name adt-oracular-amd64-lucy-20240712-170359-juju-7f2275-prod-proposed-migration-environment-3-000744f0-f5db-4c8b-8eb2-06c641946d20 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 130s autopkgtest [17:06:09]: testbed dpkg architecture: amd64 131s autopkgtest [17:06:10]: testbed apt version: 2.9.6 131s autopkgtest [17:06:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 134s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 135s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.6 kB] 135s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 135s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [334 kB] 135s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 135s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [70.9 kB] 135s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [98.2 kB] 135s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2104 B] 135s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 135s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 135s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 135s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [368 kB] 135s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [224 kB] 135s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9228 B] 135s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 135s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B] 135s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 136s Fetched 1342 kB in 0s (5244 kB/s) 136s Reading package lists... 139s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Calculating upgrade... 140s The following packages will be upgraded: 140s binutils binutils-common binutils-x86-64-linux-gnu gir1.2-glib-2.0 140s inetutils-telnet libbinutils libc-bin libc-dev-bin libc-devtools libc6 140s libc6-dev libctf-nobfd0 libctf0 libglib2.0-0t64 libglib2.0-data libgprofng0 140s libnghttp2-14 libnss3 libsframe1 libssl3t64 locales openssh-client 140s openssh-server openssh-sftp-server openssl telnet 140s 26 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Need to get 22.8 MB of archives. 140s After this operation, 444 kB of additional disk space will be used. 140s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-devtools amd64 2.39-3.1ubuntu3 [29.3 kB] 140s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6-dev amd64 2.39-3.1ubuntu3 [2120 kB] 140s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-dev-bin amd64 2.39-3.1ubuntu3 [20.4 kB] 140s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6 amd64 2.39-3.1ubuntu3 [3262 kB] 140s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-bin amd64 2.39-3.1ubuntu3 [680 kB] 140s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libssl3t64 amd64 3.2.2-1ubuntu1 [2138 kB] 140s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 openssh-sftp-server amd64 1:9.6p1-3ubuntu17 [37.1 kB] 140s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 openssh-server amd64 1:9.6p1-3ubuntu17 [509 kB] 140s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 openssh-client amd64 1:9.6p1-3ubuntu17 [905 kB] 140s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 gir1.2-glib-2.0 amd64 2.80.4-1ubuntu1 [182 kB] 140s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libglib2.0-0t64 amd64 2.80.4-1ubuntu1 [1545 kB] 140s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 140s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 locales all 2.39-3.1ubuntu3 [4220 kB] 140s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 openssl amd64 3.2.2-1ubuntu1 [1122 kB] 140s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 inetutils-telnet amd64 2:2.5-5ubuntu1 [105 kB] 140s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libnghttp2-14 amd64 1.62.1-2 [75.1 kB] 140s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 telnet all 0.17+2.5-5ubuntu1 [3688 B] 140s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libgprofng0 amd64 2.42.50.20240710-1ubuntu1 [860 kB] 140s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf0 amd64 2.42.50.20240710-1ubuntu1 [95.6 kB] 140s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf-nobfd0 amd64 2.42.50.20240710-1ubuntu1 [97.6 kB] 140s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-x86-64-linux-gnu amd64 2.42.50.20240710-1ubuntu1 [2477 kB] 140s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libbinutils amd64 2.42.50.20240710-1ubuntu1 [574 kB] 140s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils amd64 2.42.50.20240710-1ubuntu1 [18.1 kB] 140s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-common amd64 2.42.50.20240710-1ubuntu1 [243 kB] 140s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libsframe1 amd64 2.42.50.20240710-1ubuntu1 [14.4 kB] 140s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libnss3 amd64 2:3.102-1 [1399 kB] 141s Preconfiguring packages ... 141s Fetched 22.8 MB in 0s (96.1 MB/s) 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 143s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_amd64.deb ... 143s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 143s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_amd64.deb ... 143s Unpacking libc6-dev:amd64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 143s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_amd64.deb ... 143s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 143s Preparing to unpack .../libc6_2.39-3.1ubuntu3_amd64.deb ... 143s Unpacking libc6:amd64 (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 143s Setting up libc6:amd64 (2.39-3.1ubuntu3) ... 143s Error: Could not restart systemd, systemd binary not working 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 143s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_amd64.deb ... 143s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 143s Setting up libc-bin (2.39-3.1ubuntu3) ... 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 143s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_amd64.deb ... 143s Unpacking libssl3t64:amd64 (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 143s Setting up libssl3t64:amd64 (3.2.2-1ubuntu1) ... 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 143s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_amd64.deb ... 143s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 143s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_amd64.deb ... 143s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 143s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_amd64.deb ... 143s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 143s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_amd64.deb ... 143s Unpacking gir1.2-glib-2.0:amd64 (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 143s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_amd64.deb ... 143s Unpacking libglib2.0-0t64:amd64 (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 143s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 143s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 143s Preparing to unpack .../06-locales_2.39-3.1ubuntu3_all.deb ... 143s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 143s Preparing to unpack .../07-openssl_3.2.2-1ubuntu1_amd64.deb ... 143s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 143s Preparing to unpack .../08-inetutils-telnet_2%3a2.5-5ubuntu1_amd64.deb ... 143s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 143s Preparing to unpack .../09-libnghttp2-14_1.62.1-2_amd64.deb ... 143s Unpacking libnghttp2-14:amd64 (1.62.1-2) over (1.62.1-1) ... 143s Preparing to unpack .../10-telnet_0.17+2.5-5ubuntu1_all.deb ... 143s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 143s Preparing to unpack .../11-libgprofng0_2.42.50.20240710-1ubuntu1_amd64.deb ... 143s Unpacking libgprofng0:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 143s Preparing to unpack .../12-libctf0_2.42.50.20240710-1ubuntu1_amd64.deb ... 143s Unpacking libctf0:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 143s Preparing to unpack .../13-libctf-nobfd0_2.42.50.20240710-1ubuntu1_amd64.deb ... 143s Unpacking libctf-nobfd0:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 143s Preparing to unpack .../14-binutils-x86-64-linux-gnu_2.42.50.20240710-1ubuntu1_amd64.deb ... 143s Unpacking binutils-x86-64-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 143s Preparing to unpack .../15-libbinutils_2.42.50.20240710-1ubuntu1_amd64.deb ... 143s Unpacking libbinutils:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 143s Preparing to unpack .../16-binutils_2.42.50.20240710-1ubuntu1_amd64.deb ... 143s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 143s Preparing to unpack .../17-binutils-common_2.42.50.20240710-1ubuntu1_amd64.deb ... 143s Unpacking binutils-common:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 143s Preparing to unpack .../18-libsframe1_2.42.50.20240710-1ubuntu1_amd64.deb ... 143s Unpacking libsframe1:amd64 (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 143s Preparing to unpack .../19-libnss3_2%3a3.102-1_amd64.deb ... 143s Unpacking libnss3:amd64 (2:3.102-1) over (2:3.101-1) ... 143s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 144s Setting up binutils-common:amd64 (2.42.50.20240710-1ubuntu1) ... 144s Setting up libnghttp2-14:amd64 (1.62.1-2) ... 144s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 144s Setting up libctf-nobfd0:amd64 (2.42.50.20240710-1ubuntu1) ... 144s Setting up libnss3:amd64 (2:3.102-1) ... 144s Setting up locales (2.39-3.1ubuntu3) ... 144s Generating locales (this might take a while)... 146s en_US.UTF-8... done 146s Generation complete. 146s Setting up libsframe1:amd64 (2.42.50.20240710-1ubuntu1) ... 146s Setting up libglib2.0-0t64:amd64 (2.80.4-1ubuntu1) ... 146s No schema files found: doing nothing. 146s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 146s Setting up gir1.2-glib-2.0:amd64 (2.80.4-1ubuntu1) ... 146s Setting up libbinutils:amd64 (2.42.50.20240710-1ubuntu1) ... 146s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 146s Setting up openssl (3.2.2-1ubuntu1) ... 146s Installing new version of config file /etc/ssl/openssl.cnf ... 146s Setting up libc-devtools (2.39-3.1ubuntu3) ... 146s Setting up libctf0:amd64 (2.42.50.20240710-1ubuntu1) ... 146s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 146s Setting up telnet (0.17+2.5-5ubuntu1) ... 146s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 146s Installing new version of config file /etc/pam.d/sshd ... 147s Setting up libgprofng0:amd64 (2.42.50.20240710-1ubuntu1) ... 147s Setting up libc6-dev:amd64 (2.39-3.1ubuntu3) ... 147s Setting up binutils-x86-64-linux-gnu (2.42.50.20240710-1ubuntu1) ... 147s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 147s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 147s Processing triggers for ufw (0.36.2-6) ... 147s Processing triggers for systemd (256-1ubuntu1) ... 148s Processing triggers for man-db (2.12.1-2) ... 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 151s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 151s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 151s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 151s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 152s Reading package lists... 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 153s Calculating upgrade... 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 154s autopkgtest [17:06:33]: rebooting testbed after setup commands that affected boot 177s autopkgtest [17:06:56]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 191s autopkgtest [17:07:10]: @@@@@@@@@@@@@@@@@@@@ apt-source lucy 194s Get:1 http://ftpmaster.internal/ubuntu oracular/universe lucy 1.20-4 (dsc) [1275 B] 194s Get:2 http://ftpmaster.internal/ubuntu oracular/universe lucy 1.20-4 (tar) [1458 kB] 194s Get:3 http://ftpmaster.internal/ubuntu oracular/universe lucy 1.20-4 (diff) [4632 B] 195s gpgv: Signature made Sun Mar 24 16:55:05 2024 UTC 195s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 195s gpgv: Can't check signature: No public key 195s dpkg-source: warning: cannot verify inline signature for ./lucy_1.20-4.dsc: no acceptable signature found 195s autopkgtest [17:07:14]: testing package lucy version 1.20-4 195s autopkgtest [17:07:14]: build not needed 196s autopkgtest [17:07:15]: test run-unit-test: preparing testbed 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 212s Starting pkgProblemResolver with broken count: 0 213s Starting 2 pkgProblemResolver with broken count: 0 213s Done 213s The following additional packages will be installed: 213s lucy 213s The following NEW packages will be installed: 213s autopkgtest-satdep lucy 213s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 213s Need to get 941 kB/942 kB of archives. 213s After this operation, 6235 kB of additional disk space will be used. 213s Get:1 /tmp/autopkgtest.zwN4RP/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 213s Get:2 http://ftpmaster.internal/ubuntu oracular/universe amd64 lucy amd64 1.20-4 [941 kB] 214s Fetched 941 kB in 0s (8640 kB/s) 214s Selecting previously unselected package lucy. 214s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74486 files and directories currently installed.) 214s Preparing to unpack .../archives/lucy_1.20-4_amd64.deb ... 214s Unpacking lucy (1.20-4) ... 214s Selecting previously unselected package autopkgtest-satdep. 214s Preparing to unpack .../1-autopkgtest-satdep.deb ... 214s Unpacking autopkgtest-satdep (0) ... 214s Setting up lucy (1.20-4) ... 214s Setting up autopkgtest-satdep (0) ... 214s Processing triggers for man-db (2.12.1-2) ... 232s (Reading database ... 74507 files and directories currently installed.) 232s Removing autopkgtest-satdep (0) ... 235s autopkgtest [17:07:54]: test run-unit-test: [----------------------- 235s Test - 1 235s Less Useful Chunks Yank (lucy) 1.20p, by Hui-Hsien Chou and Michael Holmes, 235s with help from Granger, Anna, John and Terry Shea. 235s lucy: Warning! No vector file given; vector removal will not be done! 235s lucy: Warning! No splice file given; splice site will not be trimmed! 235s Phase 1: Checking the number of input sequences... 235s 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 input sequences found. 235s Phase 2: Reading sequence name, length and position data... 235s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 116 empty sequences discarded. 235s Phase 3: Reading quality values and checking good sequence regions... 235s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 quality sequences read; 147 low quality sequences dropped. 235s Phase 4: Comparing to 2nd sequence file... 235s 0 50 100 150 200 lucy: the 2nd sequences below (except salvaged) are not found in the first sequence file 235s lucy: >ATIEE17TF 235s 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 lucy: >ATIEO34TF 235s lucy: >ATIEO35TF 235s 1200 1250 1300 1350 1400 1450 1488 2nd sequences compared; 1307 sequences extended. 235s 73 low quality sequences salvaged. 235s Phase 7: Producing output sequence and quality files... 235s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1392 good sequences written in test1.seq and test1.qul. 235s ---------------Passed!---------------------------- 235s Test - 2 235s Less Useful Chunks Yank (lucy) 1.20p, by Hui-Hsien Chou and Michael Holmes, 235s with help from Granger, Anna, John and Terry Shea. 235s lucy: Warning! No vector file given; vector removal will not be done! 235s lucy: Warning! No splice file given; splice site will not be trimmed! 235s Phase 1: Checking the number of input sequences... 235s 1 input sequences found. 235s Phase 2: Reading sequence name, length and position data... 235s 0 0 empty sequences discarded. 235s Phase 3: Reading quality values and checking good sequence regions... 235s 0 1 quality sequences read; 0 low quality sequences dropped. 235s Phase 4: 2nd sequences comparison skipped... 235s no 2nd sequence file provided. 235s Phase 7: Producing output sequence and quality files... 235s 0 1 good sequences written in test2.seq and test2.qul. 235s ---------------Passed!---------------------------- 235s Test - 3 235s Less Useful Chunks Yank (lucy) 1.20p, by Hui-Hsien Chou and Michael Holmes, 235s with help from Granger, Anna, John and Terry Shea. 235s Phase 1: Checking the number of input sequences... 235s 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 input sequences found. 235s Phase 2: Reading sequence name, length and position data... 235s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 116 empty sequences discarded. 235s Phase 3: Reading quality values and checking good sequence regions... 235s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 quality sequences read; 147 low quality sequences dropped. 235s Phase 4: Comparing to 2nd sequence file... 235s 0 50 100 150 200 lucy: the 2nd sequences below (except salvaged) are not found in the first sequence file 235s lucy: >ATIEE17TF 236s 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 lucy: >ATIEO34TF 236s lucy: >ATIEO35TF 236s 1200 1250 1300 1350 1400 1450 1488 2nd sequences compared; 1307 sequences extended. 236s 73 low quality sequences salvaged. 236s Phase 5: Locating splice sites...Number of splice sequences: 4 241s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1 short or no insert sequences discarded. 241s Phase 6: Kicking out vector sequences... 241s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1 vector sequences discarded. 241s Phase 7: Producing output sequence and quality files... 241s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1390 good sequences written in test3.seq and test3.qul. 241s 1582 sequence cleavage information written in lucy.info. 241s ---------------Passed!---------------------------- 242s autopkgtest [17:08:01]: test run-unit-test: -----------------------] 243s autopkgtest [17:08:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 243s run-unit-test PASS 248s autopkgtest [17:08:07]: @@@@@@@@@@@@@@@@@@@@ summary 248s run-unit-test PASS 282s nova [W] Skipping flock for amd64 282s Creating nova instance adt-oracular-amd64-lucy-20240712-170359-juju-7f2275-prod-proposed-migration-environment-3-000744f0-f5db-4c8b-8eb2-06c641946d20 from image adt/ubuntu-oracular-amd64-server-20240711.img (UUID 4d65b1cc-a829-44fc-a8ac-cdd52093f9db)...