0s autopkgtest [01:02:59]: starting date and time: 2024-06-21 01:02:59+0000
  0s autopkgtest [01:02:59]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod'
  0s autopkgtest [01:02:59]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ldjqsoeu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gffread --apt-upgrade gffread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gffread/0.12.7-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-107.secgroup --name adt-oracular-amd64-gffread-20240621-010258-juju-7f2275-prod-proposed-migration-environment-3-10d9c6a4-7211-4cb6-b8a9-10f098d97622 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 86s autopkgtest [01:04:25]: testbed dpkg architecture: amd64
 86s autopkgtest [01:04:25]: testbed apt version: 2.9.5
 86s autopkgtest [01:04:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 86s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB]
 86s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
 86s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B]
 86s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [394 kB]
 86s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [42.3 kB]
 86s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [54.2 kB]
 86s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [71.7 kB]
 86s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [28.9 kB]
 86s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6732 B]
 86s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [346 kB]
 86s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [154 kB]
 86s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [8364 B]
 86s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3884 B]
 87s Fetched 1230 kB in 0s (5819 kB/s)
 87s Reading package lists...
 88s Reading package lists...
 88s Building dependency tree...
 88s Reading state information...
 89s Calculating upgrade...
 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 89s Reading package lists...
 90s Building dependency tree...
 90s Reading state information...
 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 90s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
 90s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
 90s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
 90s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
 91s Reading package lists...
 91s Reading package lists...
 92s Building dependency tree...
 92s Reading state information...
 92s Calculating upgrade...
 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 92s Reading package lists...
 92s Building dependency tree...
 92s Reading state information...
 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 94s autopkgtest [01:04:33]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024
 94s autopkgtest [01:04:33]: @@@@@@@@@@@@@@@@@@@@ apt-source gffread
 95s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (dsc) [2577 B]
 95s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (tar) [404 kB]
 95s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (diff) [8940 B]
 95s gpgv: Signature made Thu Jun 20 19:11:39 2024 UTC
 95s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
 95s gpgv:                issuer "emollier@debian.org"
 95s gpgv: Can't check signature: No public key
 95s dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-5.dsc: no acceptable signature found
 95s autopkgtest [01:04:34]: testing package gffread version 0.12.7-5
 95s autopkgtest [01:04:34]: build not needed
 95s autopkgtest [01:04:34]: test run-tests: preparing testbed
 96s Reading package lists...
 96s Building dependency tree...
 96s Reading state information...
 96s Starting pkgProblemResolver with broken count: 0
 96s Starting 2 pkgProblemResolver with broken count: 0
 96s Done
 97s The following additional packages will be installed:
 97s   apache2 apache2-bin apache2-data apache2-utils augustus-doc bamtools
 97s   bedtools-test bioperl blt bowtie2 bwa cnvkit cutadapt diamond-aligner
 97s   emboss-data emboss-test fontconfig fonts-font-awesome
 97s   fonts-glyphicons-halflings fonts-lyx fonts-mathjax fonts-urw-base35 gbrowse
 97s   gcc-13-base genometools-common gff2aplot gff2ps gffread htslib-test
 97s   javascript-common libalgorithm-diff-perl libanyevent-cachedns-perl
 97s   libanyevent-http-perl libanyevent-perl libapache-dbi-perl
 97s   libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3 libaprutil1-ldap
 97s   libaprutil1t64 libasan8 libatomic1 libbamtools2.5.2 libbio-coordinate-perl
 97s   libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl
 97s   libbio-graphics-perl libbio-perl-perl libblas3 libboost-dev libboost1.83-dev
 97s   libcairo2 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl
 97s   libclass-data-inheritable-perl libclone-perl libcommon-sense-perl
 97s   libdata-stag-perl libdatrie1 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl
 97s   libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl
 97s   libexception-class-perl libexporter-tiny-perl libfile-listing-perl
 97s   libfontenc1 libgcc-13-dev libgclib3t64 libgd-perl libgfortran5 libgomp1
 97s   libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl
 97s   libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl
 97s   libhttp-daemon-perl libhttp-date-perl libhttp-message-perl
 97s   libhttp-negotiate-perl libhwasan0 libice6 libimagequant0 libio-html-perl
 97s   libio-socket-ssl-perl libio-string-perl libitm1 libjs-bootstrap
 97s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
 97s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
 97s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
 97s   libjs-prettify libjs-prototype libjs-scriptaculous libjs-sifter.js
 97s   libjs-twitter-bootstrap-datepicker libjson-perl libjsoncpp25 liblapack3
 97s   liblbfgsb0 liblcms2-2 liblist-moreutils-perl liblist-moreutils-xs-perl
 97s   liblsan0 liblua5.1-0 liblua5.4-0 liblwp-mediatypes-perl
 97s   liblwp-protocol-https-perl libmbedcrypto7t64 libmbedtls14t64
 97s   libmbedx509-1t64 libnet-http-perl libnet-ssleay-perl libnlopt0 libopenjp2-7
 97s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
 97s   libpaper1 libpixman-1-0 libpq5 libqhull-r8.0 libquadmath0 libraqm0 libsm6
 97s   libssw0 libstatistics-descriptive-perl libstdc++-13-dev
 97s   libstring-approx-perl libsub-uplevel-perl libtcl8.6 libterm-readkey-perl
 97s   libtest-deep-perl libtest-differences-perl libtest-exception-perl
 97s   libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0
 97s   libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl libtsan2 libubsan1
 97s   liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 libwww-perl
 97s   libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 libxml-libxml-perl
 97s   libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
 97s   libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 ncbi-blast+
 97s   ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css optimir
 97s   pandoc pandoc-data perl-openssl-defaults pigz proteinortho
 97s   python-matplotlib-data python3-appdirs python3-argcomplete python3-argh
 97s   python3-biopython python3-brotli python3-cairo python3-contourpy
 97s   python3-cutadapt python3-cycler python3-dateutil python3-decorator
 97s   python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils
 97s   python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml
 97s   python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy
 97s   python3-packaging python3-pandas python3-pandas-lib python3-pil
 97s   python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx
 97s   python3-pysam python3-reportlab python3-rlpycairo python3-scipy
 97s   python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy
 97s   python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2
 97s   python3-xopen python3-zipp r-base-core r-bioc-annotationdbi
 97s   r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache
 97s   r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart
 97s   r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray
 97s   r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata
 97s   r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
 97s   r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
 97s   r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
 97s   r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
 97s   r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
 97s   r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports
 97s   r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
 97s   r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli
 97s   r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark
 97s   r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi
 97s   r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr
 97s   r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock
 97s   r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs
 97s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2
 97s   r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc
 97s   r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets
 97s   r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg
 97s   r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling
 97s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra
 97s   r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
 97s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
 97s   r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar
 97s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
 97s   r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs
 97s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl
 97s   r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart
 97s   r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny
 97s   r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival
 97s   r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex
 97s   r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr
 97s   r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools
 97s   seqan-apps sgml-base spades sqlite3 tk8.6-blt2.5 trinityrnaseq-examples
 97s   unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings
 97s   xfonts-utils xml-core zip zlib1g-dev
 97s Suggested packages:
 97s   apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser
 97s   bedtools blt-demo bowtie2-examples valgrind fonts-freefont-otf
 97s   | fonts-freefont-ttf fonts-texgyre gbrowse-data gbrowse-calign
 97s   libfile-nfslock-perl postscript-viewer libev-perl libevent-perl
 97s   libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl
 97s   libboost-doc libboost1.83-doc libboost-atomic1.83-dev
 97s   libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
 97s   libboost-contract1.83-dev libboost-coroutine1.83-dev
 97s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
 97s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
 97s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
 97s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
 97s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
 97s   libboost-numpy1.83-dev libboost-program-options1.83-dev
 97s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
 97s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
 97s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
 97s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
 97s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
 97s   libmldbm-perl libnet-daemon-perl libsql-statement-perl libdata-dump-perl
 97s   libio-compress-brotli-perl libjs-jquery-ui-docs fonts-mathjax-extras
 97s   fonts-stix libjs-mathjax-doc liblcms2-utils libcrypt-ssleay-perl
 97s   libstdc++-13-doc tcl8.6 tk8.6 tre-agrep libsub-name-perl
 97s   libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl nodejs
 97s   texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc
 97s   texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python
 97s   ruby libjs-katex citation-style-language-styles debhelper clustalo clustalw
 97s   dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons
 97s   python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml t-coffee
 97s   wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
 97s   fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
 97s   python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
 97s   python3-tornado texlive-extra-utils python-mpmath-doc python3-gmpy2
 97s   python3-gdal python3-pydot python3-pygraphviz gcc gfortran python-numpy-doc
 97s   python3-dev python3-pytest python-pandas-doc python3-statsmodels
 97s   python-pil-doc python-pomegranate-doc python-pybedtools-doc pdf-viewer
 97s   python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm
 97s   python-scipy-doc python3-dap python-sklearn-doc texlive-fonts-extra
 97s   python-sympy-doc tix python3-tk-dbg elpa-ess r-doc-info | r-doc-pdf
 97s   r-mathlib r-base-html r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db
 97s   r-bioc-graph r-bioc-biocstyle r-cran-testthat r-bioc-all r-bioc-affy
 97s   r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel
 97s   r-bioc-shortread r-cran-batchtools r-cran-mockery r-cran-webmockr
 97s   r-cran-biocmanager r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr
 97s   r-bioc-delayedmatrixstats r-bioc-ggbio r-bioc-annotationhub r-cran-r.utils
 97s   r-bioc-edger r-cran-markdown r-bioc-dexseq r-bioc-sparsematrixstats
 97s   r-bioc-limma r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff
 97s   r-cran-covr r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd
 97s   r-cran-shinyjs r-cran-rmysql r-cran-polyclip r-cran-lubridate r-cran-sp
 97s   r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt
 97s   r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units
 97s   r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling
 97s   r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild
 97s   r-cran-pkgload r-cran-plm r-cran-zoo cwltool cwltool | cwl-runner
 97s   sgml-base-doc sqlite3-doc
 97s Recommended packages:
 97s   ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl
 97s   libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl med-config tcsh
 97s   | csh | c-shell graphicsmagick | imagemagick ghostscript gv
 97s   | postscript-viewer libalgorithm-diff-xs-perl libasync-interrupt-perl
 97s   libev-perl | libevent-perl libguard-perl libapache2-reload-perl
 97s   libbsd-resource-perl libbio-scf-perl libberkeleydb-perl libgd-svg-perl
 97s   bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl
 97s   libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl
 97s   libdbd-mysql-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl
 97s   libpostscript-perl libsoap-lite-perl libsort-naturally-perl
 97s   libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
 97s   libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl
 97s   libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl
 97s   libfreezethaw-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl
 97s   libhtml-format-perl node-jquery libjson-xs-perl libdata-dump-perl
 97s   libhtml-form-perl libmailtools-perl libxml-sax-expat-perl
 97s   python-biopython-doc python3-pytest python3-psutil python3-bs4
 97s   python3-cssselect python3-html5lib python3-bottleneck python3-numexpr
 97s   python3-odf python3-openpyxl python3-tables python3-numba python3-olefile
 97s   fonts-dejavu-extra g++ | c++-compiler isympy-common r-recommended r-base-dev
 97s   r-doc-html r-cran-testthat r-cran-future r-cran-thematic r-cran-fastmatch
 97s   r-cran-devtools r-cran-tinytest r-cran-callr r-cran-covr r-cran-mockery
 97s   r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench
 97s   r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling
 97s   r-cran-webutils r-cran-r.utils r-cran-xts r-cran-zoo r-cran-markdown
 97s   r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg
 97s   r-cran-testit r-cran-pkgload r-cran-hexbin r-cran-mapproj r-cran-maps
 97s   r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf
 97s   r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-readr
 97s   r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl
 97s   r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr
 97s   r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate
 97s   r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit
 97s   r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-dt r-cran-mockr
 97s   r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-renv
 97s   trinityrnaseq libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
 97s   x11-utils x11-xserver-utils
 97s The following NEW packages will be installed:
 97s   apache2 apache2-bin apache2-data apache2-utils augustus-doc
 97s   autopkgtest-satdep bamtools bedtools-test bioperl blt bowtie2 bwa cnvkit
 97s   cutadapt diamond-aligner emboss-data emboss-test fontconfig
 97s   fonts-font-awesome fonts-glyphicons-halflings fonts-lyx fonts-mathjax
 97s   fonts-urw-base35 gbrowse gcc-13-base genometools-common gff2aplot gff2ps
 97s   gffread htslib-test javascript-common libalgorithm-diff-perl
 97s   libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl
 97s   libapache-dbi-perl libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3
 97s   libaprutil1-ldap libaprutil1t64 libasan8 libatomic1 libbamtools2.5.2
 97s   libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl
 97s   libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libblas3
 97s   libboost-dev libboost1.83-dev libcairo2 libcapture-tiny-perl libcgi-pm-perl
 97s   libcgi-session-perl libclass-data-inheritable-perl libclone-perl
 97s   libcommon-sense-perl libdata-stag-perl libdatrie1 libdbd-pg-perl
 97s   libdbd-sqlite3-perl libdbi-perl libdevel-stacktrace-perl
 97s   libdevel-symdump-perl libencode-locale-perl libexception-class-perl
 97s   libexporter-tiny-perl libfile-listing-perl libfontenc1 libgcc-13-dev
 97s   libgclib3t64 libgd-perl libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
 97s   libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64
 97s   libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
 97s   libhttp-message-perl libhttp-negotiate-perl libhwasan0 libice6
 97s   libimagequant0 libio-html-perl libio-socket-ssl-perl libio-string-perl
 97s   libitm1 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
 97s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
 97s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
 97s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
 97s   libjs-prototype libjs-scriptaculous libjs-sifter.js
 97s   libjs-twitter-bootstrap-datepicker libjson-perl libjsoncpp25 liblapack3
 97s   liblbfgsb0 liblcms2-2 liblist-moreutils-perl liblist-moreutils-xs-perl
 97s   liblsan0 liblua5.1-0 liblua5.4-0 liblwp-mediatypes-perl
 97s   liblwp-protocol-https-perl libmbedcrypto7t64 libmbedtls14t64
 97s   libmbedx509-1t64 libnet-http-perl libnet-ssleay-perl libnlopt0 libopenjp2-7
 97s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
 97s   libpaper1 libpixman-1-0 libpq5 libqhull-r8.0 libquadmath0 libraqm0 libsm6
 97s   libssw0 libstatistics-descriptive-perl libstdc++-13-dev
 97s   libstring-approx-perl libsub-uplevel-perl libtcl8.6 libterm-readkey-perl
 97s   libtest-deep-perl libtest-differences-perl libtest-exception-perl
 97s   libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0
 97s   libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl libtsan2 libubsan1
 97s   liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 libwww-perl
 97s   libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 libxml-libxml-perl
 97s   libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
 97s   libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 ncbi-blast+
 97s   ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css optimir
 97s   pandoc pandoc-data perl-openssl-defaults pigz proteinortho
 97s   python-matplotlib-data python3-appdirs python3-argcomplete python3-argh
 97s   python3-biopython python3-brotli python3-cairo python3-contourpy
 97s   python3-cutadapt python3-cycler python3-dateutil python3-decorator
 97s   python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils
 97s   python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml
 97s   python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy
 97s   python3-packaging python3-pandas python3-pandas-lib python3-pil
 97s   python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx
 97s   python3-pysam python3-reportlab python3-rlpycairo python3-scipy
 97s   python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy
 97s   python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2
 97s   python3-xopen python3-zipp r-base-core r-bioc-annotationdbi
 97s   r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache
 97s   r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart
 97s   r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray
 97s   r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata
 97s   r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
 97s   r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
 97s   r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
 97s   r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
 97s   r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
 97s   r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports
 97s   r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
 97s   r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli
 97s   r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark
 97s   r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi
 97s   r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr
 97s   r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock
 97s   r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs
 97s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2
 97s   r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc
 97s   r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets
 97s   r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg
 97s   r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling
 97s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra
 97s   r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
 97s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
 97s   r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar
 97s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
 97s   r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs
 97s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl
 97s   r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart
 97s   r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny
 97s   r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival
 97s   r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex
 97s   r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr
 97s   r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools
 97s   seqan-apps sgml-base spades sqlite3 tk8.6-blt2.5 trinityrnaseq-examples
 97s   unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings
 97s   xfonts-utils xml-core zip zlib1g-dev
 97s 0 upgraded, 419 newly installed, 0 to remove and 0 not upgraded.
 97s Need to get 876 MB/876 MB of archives.
 97s After this operation, 2898 MB of additional disk space will be used.
 97s Get:1 /tmp/autopkgtest.nDP8aB/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [904 B]
 97s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libapr1t64 amd64 1.7.2-3.2 [106 kB]
 97s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libaprutil1t64 amd64 1.6.3-2ubuntu1 [92.1 kB]
 97s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.3-2ubuntu1 [11.2 kB]
 97s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libaprutil1-ldap amd64 1.6.3-2ubuntu1 [9110 B]
 97s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 liblua5.4-0 amd64 5.4.6-3build2 [166 kB]
 97s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 apache2-bin amd64 2.4.59-2ubuntu2 [1332 kB]
 97s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 apache2-data all 2.4.59-2ubuntu2 [163 kB]
 97s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 apache2-utils amd64 2.4.59-2ubuntu2 [97.0 kB]
 97s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 apache2 amd64 2.4.59-2ubuntu2 [90.3 kB]
 97s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 sgml-base all 1.31 [11.4 kB]
 97s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 pigz amd64 2.8-1 [65.6 kB]
 97s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 augustus-doc all 3.5.0+dfsg-4build5 [23.5 MB]
 97s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-4 [141 kB]
 97s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libjsoncpp25 amd64 1.9.5-6build1 [82.8 kB]
 97s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 bamtools amd64 2.5.2+dfsg-4 [177 kB]
 97s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 bedtools-test all 2.31.1+dfsg-2 [18.2 MB]
 98s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
 98s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libdata-stag-perl all 0.14-3 [372 kB]
 98s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbio-perl-perl all 1.7.8-1 [2580 kB]
 98s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libclass-data-inheritable-perl all 0.08-3 [8084 B]
 98s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libdevel-stacktrace-perl all 2.0500-1 [22.1 kB]
 98s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libexception-class-perl all 1.45-1 [28.6 kB]
 98s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-deep-perl all 1.204-1 [47.1 kB]
 98s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libcapture-tiny-perl all 0.48-2 [20.2 kB]
 98s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libalgorithm-diff-perl all 1.201-1 [41.8 kB]
 98s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtext-diff-perl all 1.45-2 [25.6 kB]
 98s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-differences-perl all 0.71-1 [15.8 kB]
 98s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsub-uplevel-perl all 0.2800-3 [11.6 kB]
 98s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-exception-perl all 0.43-3 [13.4 kB]
 98s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-warn-perl all 0.37-2 [12.6 kB]
 98s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-most-perl all 0.38-1 [21.5 kB]
 98s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 bioperl all 1.7.8-1 [216 kB]
 98s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB]
 98s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
 98s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
 98s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
 98s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
 98s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB]
 98s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB]
 98s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B]
 98s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 bwa amd64 0.7.17-7 [195 kB]
 98s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB]
 98s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB]
 98s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB]
 98s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB]
 98s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB]
 98s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B]
 98s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB]
 98s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
 98s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB]
 98s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB]
 98s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2build1 [73.0 kB]
 98s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB]
 98s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB]
 98s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB]
 98s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB]
 98s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB]
 98s Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB]
 98s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
 98s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
 98s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo2 amd64 1.18.0-3build1 [566 kB]
 98s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-cairo amd64 1.26.0-1 [119 kB]
 98s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-freetype all 2.4.0-2 [81.3 kB]
 98s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B]
 98s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB]
 98s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
 98s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 xfonts-utils amd64 1:7.7+6build3 [94.4 kB]
 98s Get:69 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB]
 98s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-reportlab all 4.2.0-2 [1130 kB]
 98s Get:71 http://ftpmaster.internal/ubuntu oracular/main amd64 xml-core all 0.19 [20.3 kB]
 98s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB]
 98s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-biopython amd64 1.83+dfsg1-3 [1653 kB]
 98s Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
 98s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
 98s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.0-1 [171 kB]
 98s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB]
 98s Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB]
 98s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB]
 98s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B]
 98s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB]
 98s Get:82 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
 98s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
 98s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB]
 98s Get:85 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
 98s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB]
 98s Get:87 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB]
 98s Get:88 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB]
 98s Get:89 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB]
 98s Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB]
 98s Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB]
 98s Get:92 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB]
 98s Get:93 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB]
 98s Get:94 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
 98s Get:95 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB]
 98s Get:96 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB]
 98s Get:97 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB]
 98s Get:98 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
 98s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB]
 98s Get:100 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB]
 98s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB]
 98s Get:102 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-joblib all 1.3.2-2 [208 kB]
 98s Get:103 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
 98s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pomegranate amd64 0.14.8-6 [2549 kB]
 98s Get:105 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-zipp all 3.19.2-2 [10.2 kB]
 98s Get:106 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-importlib-metadata all 7.1.0-1 [19.2 kB]
 98s Get:107 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pyfaidx all 0.8.1.1-2 [29.6 kB]
 98s Get:108 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhtscodecs2 amd64 1.6.0-1build1 [98.8 kB]
 98s Get:109 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhts3t64 amd64 1.20+ds-1 [439 kB]
 98s Get:110 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pysam amd64 0.22.1+ds-2 [3504 kB]
 98s Get:111 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
 98s Get:112 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-1 [3795 kB]
 98s Get:113 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn all 1.4.2+dfsg-1 [2261 kB]
 98s Get:114 http://ftpmaster.internal/ubuntu oracular/main amd64 zip amd64 3.0-13build1 [175 kB]
 98s Get:115 http://ftpmaster.internal/ubuntu oracular/main amd64 unzip amd64 6.0-28ubuntu5 [180 kB]
 98s Get:116 http://ftpmaster.internal/ubuntu oracular/main amd64 libpaper1 amd64 1.1.29build1 [13.4 kB]
 98s Get:117 http://ftpmaster.internal/ubuntu oracular/main amd64 libpaper-utils amd64 1.1.29build1 [8650 B]
 98s Get:118 http://ftpmaster.internal/ubuntu oracular/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
 98s Get:119 http://ftpmaster.internal/ubuntu oracular/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB]
 98s Get:120 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
 98s Get:121 http://ftpmaster.internal/ubuntu oracular/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
 98s Get:122 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
 98s Get:123 http://ftpmaster.internal/ubuntu oracular/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [233 kB]
 98s Get:124 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [42.3 kB]
 98s Get:125 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [28.7 kB]
 98s Get:126 http://ftpmaster.internal/ubuntu oracular/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB]
 98s Get:127 http://ftpmaster.internal/ubuntu oracular/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB]
 98s Get:128 http://ftpmaster.internal/ubuntu oracular/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
 98s Get:129 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-base-core amd64 4.4.1-1 [28.5 MB]
 99s Get:130 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
 99s Get:131 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-dnacopy amd64 1.76.0-1 [380 kB]
 99s Get:132 http://ftpmaster.internal/ubuntu oracular/universe amd64 cnvkit all 0.9.10-2 [20.5 MB]
 99s Get:133 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-xopen all 1.7.0-2 [17.0 kB]
 99s Get:134 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-dnaio amd64 1.2.0-2build1 [80.4 kB]
 99s Get:135 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cutadapt amd64 4.7-2 [183 kB]
 99s Get:136 http://ftpmaster.internal/ubuntu oracular/universe amd64 cutadapt all 4.7-2 [6766 B]
 99s Get:137 http://ftpmaster.internal/ubuntu oracular/universe amd64 diamond-aligner amd64 2.1.9-1 [2504 kB]
 99s Get:138 http://ftpmaster.internal/ubuntu oracular/universe amd64 emboss-data all 6.6.0+dfsg-12ubuntu2 [61.0 MB]
100s Get:139 http://ftpmaster.internal/ubuntu oracular/universe amd64 emboss-test all 6.6.0+dfsg-12ubuntu2 [4801 kB]
100s Get:140 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
100s Get:141 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
100s Get:142 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
100s Get:143 http://ftpmaster.internal/ubuntu oracular/main amd64 libgd-perl amd64 2.78-1build3 [129 kB]
100s Get:144 http://ftpmaster.internal/ubuntu oracular/main amd64 libdevel-symdump-perl all 2.18-5 [12.6 kB]
100s Get:145 http://ftpmaster.internal/ubuntu oracular/main amd64 liburi-perl all 5.28-1 [88.1 kB]
100s Get:146 http://ftpmaster.internal/ubuntu oracular/main amd64 libencode-locale-perl all 1.05-3 [11.6 kB]
100s Get:147 http://ftpmaster.internal/ubuntu oracular/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB]
100s Get:148 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-date-perl all 6.06-1 [10.2 kB]
100s Get:149 http://ftpmaster.internal/ubuntu oracular/main amd64 libfile-listing-perl all 6.16-1 [11.3 kB]
100s Get:150 http://ftpmaster.internal/ubuntu oracular/main amd64 libhtml-tagset-perl all 3.24-1 [14.1 kB]
100s Get:151 http://ftpmaster.internal/ubuntu oracular/main amd64 libhtml-parser-perl amd64 3.82-1 [85.6 kB]
100s Get:152 http://ftpmaster.internal/ubuntu oracular/main amd64 libhtml-tree-perl all 5.07-3 [200 kB]
100s Get:153 http://ftpmaster.internal/ubuntu oracular/main amd64 libclone-perl amd64 0.46-1build3 [10.7 kB]
100s Get:154 http://ftpmaster.internal/ubuntu oracular/main amd64 libio-html-perl all 1.004-3 [15.9 kB]
100s Get:155 http://ftpmaster.internal/ubuntu oracular/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB]
100s Get:156 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-message-perl all 6.45-1ubuntu1 [78.2 kB]
100s Get:157 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-cookies-perl all 6.11-1 [18.2 kB]
100s Get:158 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-negotiate-perl all 6.01-2 [12.4 kB]
100s Get:159 http://ftpmaster.internal/ubuntu oracular/main amd64 perl-openssl-defaults amd64 7build3 [6626 B]
100s Get:160 http://ftpmaster.internal/ubuntu oracular/main amd64 libnet-ssleay-perl amd64 1.94-1build4 [316 kB]
100s Get:161 http://ftpmaster.internal/ubuntu oracular/main amd64 libio-socket-ssl-perl all 2.085-1 [195 kB]
100s Get:162 http://ftpmaster.internal/ubuntu oracular/main amd64 libnet-http-perl all 6.23-1 [22.3 kB]
100s Get:163 http://ftpmaster.internal/ubuntu oracular/main amd64 liblwp-protocol-https-perl all 6.14-1 [9040 B]
100s Get:164 http://ftpmaster.internal/ubuntu oracular/main amd64 libtry-tiny-perl all 0.31-2 [20.8 kB]
100s Get:165 http://ftpmaster.internal/ubuntu oracular/main amd64 libwww-robotrules-perl all 6.02-1 [12.6 kB]
100s Get:166 http://ftpmaster.internal/ubuntu oracular/main amd64 libwww-perl all 6.77-1 [138 kB]
100s Get:167 http://ftpmaster.internal/ubuntu oracular/main amd64 libapache2-mod-perl2 amd64 2.0.13-1build5 [781 kB]
100s Get:168 http://ftpmaster.internal/ubuntu oracular/main amd64 libdbi-perl amd64 1.643-4build3 [721 kB]
100s Get:169 http://ftpmaster.internal/ubuntu oracular/universe amd64 libapache-dbi-perl all 1.12-3 [40.5 kB]
100s Get:170 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbio-db-biofetch-perl all 1.7.3-4 [17.1 kB]
100s Get:171 http://ftpmaster.internal/ubuntu oracular/main amd64 libcgi-pm-perl all 4.65-1 [185 kB]
100s Get:172 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbio-db-gff-perl all 1.7.4-1 [273 kB]
100s Get:173 http://ftpmaster.internal/ubuntu oracular/main amd64 libpq5 amd64 16.3-1 [140 kB]
100s Get:174 http://ftpmaster.internal/ubuntu oracular/universe amd64 libdbd-pg-perl amd64 3.18.0-1build3 [192 kB]
100s Get:175 http://ftpmaster.internal/ubuntu oracular/universe amd64 libdbd-sqlite3-perl amd64 1.74-1build3 [161 kB]
100s Get:176 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbio-db-seqfeature-perl all 1.7.4-2 [169 kB]
100s Get:177 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbio-graphics-perl all 2.40-6 [601 kB]
100s Get:178 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbio-coordinate-perl all 1.7.1-4 [56.4 kB]
100s Get:179 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcgi-session-perl all 4.48-4 [108 kB]
100s Get:180 http://ftpmaster.internal/ubuntu oracular/main amd64 libjson-perl all 4.10000-1 [81.9 kB]
100s Get:181 http://ftpmaster.internal/ubuntu oracular/main amd64 libexporter-tiny-perl all 1.006002-1 [36.8 kB]
100s Get:182 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblist-moreutils-xs-perl amd64 0.430-4 [43.8 kB]
100s Get:183 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblist-moreutils-perl all 0.430-2 [38.2 kB]
100s Get:184 http://ftpmaster.internal/ubuntu oracular/universe amd64 libstatistics-descriptive-perl all 3.0801-1 [58.7 kB]
100s Get:185 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-daemon-perl all 6.16-1 [22.4 kB]
100s Get:186 http://ftpmaster.internal/ubuntu oracular/main amd64 libterm-readkey-perl amd64 2.38-2build4 [23.1 kB]
100s Get:187 http://ftpmaster.internal/ubuntu oracular/main amd64 sqlite3 amd64 3.46.0-1 [150 kB]
100s Get:188 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-prototype all 1.7.3-1 [44.8 kB]
100s Get:189 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-scriptaculous all 1.9.0-3 [92.6 kB]
100s Get:190 http://ftpmaster.internal/ubuntu oracular/universe amd64 libanyevent-perl amd64 7.170-2build6 [368 kB]
100s Get:191 http://ftpmaster.internal/ubuntu oracular/universe amd64 libanyevent-cachedns-perl all 0.08-3 [7216 B]
100s Get:192 http://ftpmaster.internal/ubuntu oracular/main amd64 libcommon-sense-perl amd64 3.75-3build3 [20.4 kB]
100s Get:193 http://ftpmaster.internal/ubuntu oracular/universe amd64 libanyevent-http-perl all 2.25-2 [30.3 kB]
100s Get:194 http://ftpmaster.internal/ubuntu oracular/universe amd64 libstring-approx-perl amd64 3.28-2build4 [35.1 kB]
100s Get:195 http://ftpmaster.internal/ubuntu oracular/main amd64 libxml-namespacesupport-perl all 1.12-2 [13.5 kB]
100s Get:196 http://ftpmaster.internal/ubuntu oracular/main amd64 libxml-sax-base-perl all 1.09-3 [18.9 kB]
100s Get:197 http://ftpmaster.internal/ubuntu oracular/main amd64 libxml-sax-perl all 1.02+dfsg-3 [57.0 kB]
100s Get:198 http://ftpmaster.internal/ubuntu oracular/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-2 [304 kB]
100s Get:199 http://ftpmaster.internal/ubuntu oracular/main amd64 libxml-simple-perl all 2.25-2 [64.1 kB]
100s Get:200 http://ftpmaster.internal/ubuntu oracular/universe amd64 libvm-ec2-perl all 1.28-4 [766 kB]
100s Get:201 http://ftpmaster.internal/ubuntu oracular/universe amd64 gbrowse all 2.56+dfsg-12build3 [2181 kB]
100s Get:202 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB]
100s Get:203 http://ftpmaster.internal/ubuntu oracular/universe amd64 gff2aplot amd64 2.0-15 [255 kB]
100s Get:204 http://ftpmaster.internal/ubuntu oracular/universe amd64 gff2ps all 0.98l-6 [63.1 kB]
100s Get:205 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgclib3t64 amd64 0.12.7+ds-5ubuntu3 [162 kB]
100s Get:206 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 gffread amd64 0.12.7-5 [66.3 kB]
100s Get:207 http://ftpmaster.internal/ubuntu oracular/universe amd64 htslib-test all 1.20+ds-1 [1145 kB]
100s Get:208 http://ftpmaster.internal/ubuntu oracular/main amd64 javascript-common all 11+nmu1 [5936 B]
100s Get:209 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-1ubuntu1 [3025 kB]
100s Get:210 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB]
100s Get:211 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-1ubuntu1 [29.1 kB]
100s Get:212 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-1ubuntu1 [1313 kB]
100s Get:213 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-1ubuntu1 [2736 kB]
100s Get:214 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB]
100s Get:215 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-1ubuntu1 [1632 kB]
100s Get:216 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-1ubuntu1 [153 kB]
100s Get:217 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB]
100s Get:218 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB]
100s Get:219 http://ftpmaster.internal/ubuntu oracular/main amd64 libboost1.83-dev amd64 1.83.0-3ubuntu1 [10.7 MB]
100s Get:220 http://ftpmaster.internal/ubuntu oracular/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B]
100s Get:221 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
100s Get:222 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
100s Get:223 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
100s Get:224 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
100s Get:225 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
100s Get:226 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
100s Get:227 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
100s Get:228 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
100s Get:229 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
100s Get:230 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
100s Get:231 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
100s Get:232 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
100s Get:233 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblua5.1-0 amd64 5.1.5-9build2 [120 kB]
100s Get:234 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedcrypto7t64 amd64 2.28.8-1 [209 kB]
100s Get:235 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedx509-1t64 amd64 2.28.8-1 [46.6 kB]
100s Get:236 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedtls14t64 amd64 2.28.8-1 [82.2 kB]
100s Get:237 http://ftpmaster.internal/ubuntu oracular/universe amd64 libssw0 amd64 1.1-14build1 [22.1 kB]
100s Get:238 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtre5 amd64 0.8.0-7 [50.1 kB]
100s Get:239 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB]
100s Get:240 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-blast+ amd64 2.12.0+ds-4build2 [12.5 MB]
100s Get:241 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
100s Get:242 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
100s Get:243 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
100s Get:244 http://ftpmaster.internal/ubuntu oracular/universe amd64 bowtie2 amd64 2.5.3-1 [1254 kB]
100s Get:245 http://ftpmaster.internal/ubuntu oracular/universe amd64 samtools amd64 1.20-3 [599 kB]
100s Get:246 http://ftpmaster.internal/ubuntu oracular/universe amd64 optimir all 1.2-1 [1128 kB]
100s Get:247 http://ftpmaster.internal/ubuntu oracular/universe amd64 pandoc-data all 3.1.3-2build2 [78.3 kB]
100s Get:248 http://ftpmaster.internal/ubuntu oracular/universe amd64 pandoc amd64 3.1.3+ds-3build1 [26.9 MB]
101s Get:249 http://ftpmaster.internal/ubuntu oracular/universe amd64 proteinortho amd64 6.3.1+dfsg-1 [358 kB]
101s Get:250 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-argcomplete all 3.4.0-1 [34.6 kB]
101s Get:251 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-argh all 0.31.2-1 [26.9 kB]
101s Get:252 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-simplejson amd64 3.19.2-1build2 [54.5 kB]
101s Get:253 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-gffutils all 0.13-1 [1081 kB]
101s Get:254 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pybedtools amd64 0.10.0-1 [12.3 MB]
101s Get:255 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
101s Get:256 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
101s Get:257 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
101s Get:258 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB]
101s Get:259 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB]
101s Get:260 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB]
101s Get:261 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB]
101s Get:262 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
101s Get:263 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
101s Get:264 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
101s Get:265 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
101s Get:266 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
101s Get:267 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
101s Get:268 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
101s Get:269 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
101s Get:270 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
101s Get:271 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
101s Get:272 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB]
101s Get:273 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rsqlite amd64 2.3.7-1 [1237 kB]
102s Get:274 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-curl amd64 5.2.1+dfsg-1 [180 kB]
102s Get:275 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
102s Get:276 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
102s Get:277 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB]
102s Get:278 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB]
102s Get:279 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2build2 [402 kB]
102s Get:280 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
102s Get:281 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
102s Get:282 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB]
102s Get:283 http://ftpmaster.internal/ubuntu oracular/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1ubuntu2 [894 kB]
102s Get:284 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
102s Get:285 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
102s Get:286 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
102s Get:287 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1build2 [793 kB]
102s Get:288 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
102s Get:289 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
102s Get:290 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
102s Get:291 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-biostrings amd64 2.70.3+dfsg-1 [13.6 MB]
103s Get:292 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
103s Get:293 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
103s Get:294 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB]
103s Get:295 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB]
103s Get:296 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB]
103s Get:297 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB]
103s Get:298 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
103s Get:299 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
103s Get:300 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
103s Get:301 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
103s Get:302 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
103s Get:303 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
103s Get:304 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB]
103s Get:305 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB]
103s Get:306 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB]
103s Get:307 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB]
103s Get:308 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
103s Get:309 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB]
103s Get:310 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB]
103s Get:311 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB]
103s Get:312 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB]
103s Get:313 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB]
103s Get:314 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
103s Get:315 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
103s Get:316 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
103s Get:317 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
103s Get:318 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
103s Get:319 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB]
103s Get:320 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
103s Get:321 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB]
103s Get:322 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB]
103s Get:323 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB]
103s Get:324 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
103s Get:325 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB]
103s Get:326 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-digest amd64 0.6.35-1 [195 kB]
103s Get:327 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
103s Get:328 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB]
104s Get:329 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB]
104s Get:330 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-farver amd64 2.1.1-2 [1349 kB]
104s Get:331 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
104s Get:332 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB]
104s Get:333 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB]
104s Get:334 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
104s Get:335 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
104s Get:336 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
104s Get:337 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-gtable all 0.3.5+dfsg-1 [192 kB]
104s Get:338 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
104s Get:339 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-mass amd64 7.3-61-1 [1109 kB]
104s Get:340 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
104s Get:341 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-nlme amd64 3.1.165-1 [2309 kB]
104s Get:342 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-matrix amd64 1.7-0-3 [4185 kB]
104s Get:343 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
104s Get:344 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
104s Get:345 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-cluster amd64 2.1.6-1build1 [553 kB]
104s Get:346 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-survival amd64 3.7-0-1 [6271 kB]
104s Get:347 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rpart amd64 4.1.23-1build1 [661 kB]
104s Get:348 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-nnet amd64 7.3-19-2build1 [112 kB]
104s Get:349 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-foreign amd64 0.8.86-1build1 [242 kB]
104s Get:350 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB]
104s Get:351 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-data.table amd64 1.15.4+dfsg-2.2 [1860 kB]
104s Get:352 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB]
104s Get:353 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-xfun amd64 0.44+dfsg-1 [518 kB]
104s Get:354 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
104s Get:355 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-yaml amd64 2.3.8-2 [108 kB]
104s Get:356 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
104s Get:357 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-knitr all 1.46+dfsg-1 [911 kB]
104s Get:358 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-backports amd64 1.4.1-1 [101 kB]
104s Get:359 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB]
104s Get:360 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
104s Get:361 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
104s Get:362 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
104s Get:363 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1build2 [229 kB]
104s Get:364 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
104s Get:365 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB]
104s Get:366 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
104s Get:367 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-tinytex all 0.51-1 [145 kB]
105s Get:368 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB]
105s Get:369 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-littler amd64 0.3.20-1 [96.0 kB]
105s Get:370 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
105s Get:371 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
105s Get:372 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB]
105s Get:373 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB]
105s Get:374 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
105s Get:375 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
105s Get:376 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
105s Get:377 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB]
105s Get:378 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
105s Get:379 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB]
105s Get:380 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
105s Get:381 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
105s Get:382 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rstudioapi all 0.16.0-1 [287 kB]
105s Get:383 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-htmltable all 2.4.2-1 [381 kB]
105s Get:384 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB]
105s Get:385 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-formula all 1.2-5-1 [158 kB]
105s Get:386 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-chron amd64 2.3-61-2 [186 kB]
105s Get:387 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB]
105s Get:388 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
105s Get:389 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.0-1build1 [1425 kB]
105s Get:390 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB]
105s Get:391 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB]
105s Get:392 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-acepack amd64 1.4.2-1 [61.3 kB]
105s Get:393 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-hmisc amd64 5.1-3-1 [3556 kB]
105s Get:394 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB]
105s Get:395 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-matrixstats amd64 1.3.0-1 [505 kB]
105s Get:396 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
105s Get:397 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB]
105s Get:398 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB]
105s Get:399 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB]
105s Get:400 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB]
105s Get:401 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
105s Get:402 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-3build2 [1361 kB]
105s Get:403 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1build2 [3650 kB]
105s Get:404 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB]
105s Get:405 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB]
105s Get:406 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB]
105s Get:407 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB]
105s Get:408 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB]
105s Get:409 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB]
106s Get:410 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-variantannotation amd64 1.48.1-1build2 [3532 kB]
106s Get:411 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB]
106s Get:412 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB]
106s Get:413 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-biovizbase amd64 1.50.0-1 [2665 kB]
106s Get:414 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB]
106s Get:415 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnlopt0 amd64 2.7.1-5build2 [184 kB]
106s Get:416 http://ftpmaster.internal/ubuntu oracular/universe amd64 spades amd64 3.15.5+dfsg-7 [9133 kB]
106s Get:417 http://ftpmaster.internal/ubuntu oracular/universe amd64 trinityrnaseq-examples amd64 2.15.1+dfsg-5build1 [299 MB]
111s Get:418 http://ftpmaster.internal/ubuntu oracular/universe amd64 genometools-common all 1.6.5+ds-2.2 [194 kB]
111s Get:419 http://ftpmaster.internal/ubuntu oracular/universe amd64 seqan-apps amd64 2.4.0+dfsg-16 [12.3 MB]
112s Preconfiguring packages ...
112s Fetched 876 MB in 15s (60.1 MB/s)
112s Selecting previously unselected package libapr1t64:amd64.
113s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74379 files and directories currently installed.)
113s Preparing to unpack .../000-libapr1t64_1.7.2-3.2_amd64.deb ...
113s Unpacking libapr1t64:amd64 (1.7.2-3.2) ...
113s Selecting previously unselected package libaprutil1t64:amd64.
113s Preparing to unpack .../001-libaprutil1t64_1.6.3-2ubuntu1_amd64.deb ...
113s Unpacking libaprutil1t64:amd64 (1.6.3-2ubuntu1) ...
113s Selecting previously unselected package libaprutil1-dbd-sqlite3:amd64.
113s Preparing to unpack .../002-libaprutil1-dbd-sqlite3_1.6.3-2ubuntu1_amd64.deb ...
113s Unpacking libaprutil1-dbd-sqlite3:amd64 (1.6.3-2ubuntu1) ...
113s Selecting previously unselected package libaprutil1-ldap:amd64.
113s Preparing to unpack .../003-libaprutil1-ldap_1.6.3-2ubuntu1_amd64.deb ...
113s Unpacking libaprutil1-ldap:amd64 (1.6.3-2ubuntu1) ...
113s Selecting previously unselected package liblua5.4-0:amd64.
113s Preparing to unpack .../004-liblua5.4-0_5.4.6-3build2_amd64.deb ...
113s Unpacking liblua5.4-0:amd64 (5.4.6-3build2) ...
113s Selecting previously unselected package apache2-bin.
113s Preparing to unpack .../005-apache2-bin_2.4.59-2ubuntu2_amd64.deb ...
113s Unpacking apache2-bin (2.4.59-2ubuntu2) ...
113s Selecting previously unselected package apache2-data.
113s Preparing to unpack .../006-apache2-data_2.4.59-2ubuntu2_all.deb ...
113s Unpacking apache2-data (2.4.59-2ubuntu2) ...
113s Selecting previously unselected package apache2-utils.
113s Preparing to unpack .../007-apache2-utils_2.4.59-2ubuntu2_amd64.deb ...
113s Unpacking apache2-utils (2.4.59-2ubuntu2) ...
113s Selecting previously unselected package apache2.
113s Preparing to unpack .../008-apache2_2.4.59-2ubuntu2_amd64.deb ...
113s Unpacking apache2 (2.4.59-2ubuntu2) ...
113s Selecting previously unselected package sgml-base.
113s Preparing to unpack .../009-sgml-base_1.31_all.deb ...
113s Unpacking sgml-base (1.31) ...
113s Selecting previously unselected package pigz.
113s Preparing to unpack .../010-pigz_2.8-1_amd64.deb ...
113s Unpacking pigz (2.8-1) ...
113s Selecting previously unselected package augustus-doc.
113s Preparing to unpack .../011-augustus-doc_3.5.0+dfsg-4build5_all.deb ...
113s Unpacking augustus-doc (3.5.0+dfsg-4build5) ...
114s Selecting previously unselected package libbamtools2.5.2:amd64.
114s Preparing to unpack .../012-libbamtools2.5.2_2.5.2+dfsg-4_amd64.deb ...
114s Unpacking libbamtools2.5.2:amd64 (2.5.2+dfsg-4) ...
114s Selecting previously unselected package libjsoncpp25:amd64.
114s Preparing to unpack .../013-libjsoncpp25_1.9.5-6build1_amd64.deb ...
114s Unpacking libjsoncpp25:amd64 (1.9.5-6build1) ...
114s Selecting previously unselected package bamtools.
114s Preparing to unpack .../014-bamtools_2.5.2+dfsg-4_amd64.deb ...
114s Unpacking bamtools (2.5.2+dfsg-4) ...
114s Selecting previously unselected package bedtools-test.
114s Preparing to unpack .../015-bedtools-test_2.31.1+dfsg-2_all.deb ...
114s Unpacking bedtools-test (2.31.1+dfsg-2) ...
114s Selecting previously unselected package libio-string-perl.
114s Preparing to unpack .../016-libio-string-perl_1.08-4_all.deb ...
114s Unpacking libio-string-perl (1.08-4) ...
114s Selecting previously unselected package libdata-stag-perl.
114s Preparing to unpack .../017-libdata-stag-perl_0.14-3_all.deb ...
114s Unpacking libdata-stag-perl (0.14-3) ...
114s Selecting previously unselected package libbio-perl-perl.
114s Preparing to unpack .../018-libbio-perl-perl_1.7.8-1_all.deb ...
114s Unpacking libbio-perl-perl (1.7.8-1) ...
114s Selecting previously unselected package libclass-data-inheritable-perl.
114s Preparing to unpack .../019-libclass-data-inheritable-perl_0.08-3_all.deb ...
114s Unpacking libclass-data-inheritable-perl (0.08-3) ...
115s Selecting previously unselected package libdevel-stacktrace-perl.
115s Preparing to unpack .../020-libdevel-stacktrace-perl_2.0500-1_all.deb ...
115s Unpacking libdevel-stacktrace-perl (2.0500-1) ...
115s Selecting previously unselected package libexception-class-perl.
115s Preparing to unpack .../021-libexception-class-perl_1.45-1_all.deb ...
115s Unpacking libexception-class-perl (1.45-1) ...
115s Selecting previously unselected package libtest-deep-perl.
115s Preparing to unpack .../022-libtest-deep-perl_1.204-1_all.deb ...
115s Unpacking libtest-deep-perl (1.204-1) ...
115s Selecting previously unselected package libcapture-tiny-perl.
115s Preparing to unpack .../023-libcapture-tiny-perl_0.48-2_all.deb ...
115s Unpacking libcapture-tiny-perl (0.48-2) ...
115s Selecting previously unselected package libalgorithm-diff-perl.
115s Preparing to unpack .../024-libalgorithm-diff-perl_1.201-1_all.deb ...
115s Unpacking libalgorithm-diff-perl (1.201-1) ...
115s Selecting previously unselected package libtext-diff-perl.
115s Preparing to unpack .../025-libtext-diff-perl_1.45-2_all.deb ...
115s Unpacking libtext-diff-perl (1.45-2) ...
115s Selecting previously unselected package libtest-differences-perl.
115s Preparing to unpack .../026-libtest-differences-perl_0.71-1_all.deb ...
115s Unpacking libtest-differences-perl (0.71-1) ...
115s Selecting previously unselected package libsub-uplevel-perl.
115s Preparing to unpack .../027-libsub-uplevel-perl_0.2800-3_all.deb ...
115s Unpacking libsub-uplevel-perl (0.2800-3) ...
115s Selecting previously unselected package libtest-exception-perl.
115s Preparing to unpack .../028-libtest-exception-perl_0.43-3_all.deb ...
115s Unpacking libtest-exception-perl (0.43-3) ...
115s Selecting previously unselected package libtest-warn-perl.
115s Preparing to unpack .../029-libtest-warn-perl_0.37-2_all.deb ...
115s Unpacking libtest-warn-perl (0.37-2) ...
115s Selecting previously unselected package libtest-most-perl.
115s Preparing to unpack .../030-libtest-most-perl_0.38-1_all.deb ...
115s Unpacking libtest-most-perl (0.38-1) ...
115s Selecting previously unselected package bioperl.
115s Preparing to unpack .../031-bioperl_1.7.8-1_all.deb ...
115s Unpacking bioperl (1.7.8-1) ...
115s Selecting previously unselected package libtcl8.6:amd64.
115s Preparing to unpack .../032-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ...
115s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ...
115s Selecting previously unselected package libxrender1:amd64.
115s Preparing to unpack .../033-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
115s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
115s Selecting previously unselected package libxft2:amd64.
115s Preparing to unpack .../034-libxft2_2.3.6-1build1_amd64.deb ...
115s Unpacking libxft2:amd64 (2.3.6-1build1) ...
115s Selecting previously unselected package x11-common.
115s Preparing to unpack .../035-x11-common_1%3a7.7+23ubuntu3_all.deb ...
115s Unpacking x11-common (1:7.7+23ubuntu3) ...
115s Selecting previously unselected package libxss1:amd64.
115s Preparing to unpack .../036-libxss1_1%3a1.2.3-1build3_amd64.deb ...
115s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
115s Selecting previously unselected package libtk8.6:amd64.
115s Preparing to unpack .../037-libtk8.6_8.6.14-1build1_amd64.deb ...
115s Unpacking libtk8.6:amd64 (8.6.14-1build1) ...
115s Selecting previously unselected package tk8.6-blt2.5.
115s Preparing to unpack .../038-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ...
115s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
115s Selecting previously unselected package blt.
115s Preparing to unpack .../039-blt_2.5.3+dfsg-7build1_amd64.deb ...
115s Unpacking blt (2.5.3+dfsg-7build1) ...
115s Selecting previously unselected package bwa.
115s Preparing to unpack .../040-bwa_0.7.17-7_amd64.deb ...
115s Unpacking bwa (0.7.17-7) ...
115s Selecting previously unselected package libblas3:amd64.
115s Preparing to unpack .../041-libblas3_3.12.0-3build1_amd64.deb ...
115s Unpacking libblas3:amd64 (3.12.0-3build1) ...
115s Selecting previously unselected package libgfortran5:amd64.
115s Preparing to unpack .../042-libgfortran5_14.1.0-1ubuntu1_amd64.deb ...
115s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ...
115s Selecting previously unselected package liblapack3:amd64.
115s Preparing to unpack .../043-liblapack3_3.12.0-3build1_amd64.deb ...
115s Unpacking liblapack3:amd64 (3.12.0-3build1) ...
115s Selecting previously unselected package python3-numpy.
115s Preparing to unpack .../044-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ...
115s Unpacking python3-numpy (1:1.26.4+ds-10) ...
116s Selecting previously unselected package python3-tk:amd64.
116s Preparing to unpack .../045-python3-tk_3.12.3-0ubuntu1_amd64.deb ...
116s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ...
116s Selecting previously unselected package python3-pil.imagetk:amd64.
116s Preparing to unpack .../046-python3-pil.imagetk_10.3.0-2_amd64.deb ...
116s Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ...
116s Selecting previously unselected package libgomp1:amd64.
116s Preparing to unpack .../047-libgomp1_14.1.0-1ubuntu1_amd64.deb ...
116s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ...
116s Selecting previously unselected package libimagequant0:amd64.
116s Preparing to unpack .../048-libimagequant0_2.18.0-1build1_amd64.deb ...
116s Unpacking libimagequant0:amd64 (2.18.0-1build1) ...
116s Selecting previously unselected package liblcms2-2:amd64.
116s Preparing to unpack .../049-liblcms2-2_2.14-2build1_amd64.deb ...
116s Unpacking liblcms2-2:amd64 (2.14-2build1) ...
116s Selecting previously unselected package libopenjp2-7:amd64.
116s Preparing to unpack .../050-libopenjp2-7_2.5.0-2build3_amd64.deb ...
116s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ...
116s Selecting previously unselected package libgraphite2-3:amd64.
116s Preparing to unpack .../051-libgraphite2-3_1.3.14-2build1_amd64.deb ...
116s Unpacking libgraphite2-3:amd64 (1.3.14-2build1) ...
116s Selecting previously unselected package libharfbuzz0b:amd64.
116s Preparing to unpack .../052-libharfbuzz0b_8.3.0-2build2_amd64.deb ...
116s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ...
116s Selecting previously unselected package libraqm0:amd64.
116s Preparing to unpack .../053-libraqm0_0.10.1-1build1_amd64.deb ...
116s Unpacking libraqm0:amd64 (0.10.1-1build1) ...
116s Selecting previously unselected package libwebpdemux2:amd64.
116s Preparing to unpack .../054-libwebpdemux2_1.4.0-0.1_amd64.deb ...
116s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ...
116s Selecting previously unselected package libwebpmux3:amd64.
116s Preparing to unpack .../055-libwebpmux3_1.4.0-0.1_amd64.deb ...
116s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ...
116s Selecting previously unselected package python3-pil:amd64.
116s Preparing to unpack .../056-python3-pil_10.3.0-2_amd64.deb ...
116s Unpacking python3-pil:amd64 (10.3.0-2) ...
116s Selecting previously unselected package libpixman-1-0:amd64.
116s Preparing to unpack .../057-libpixman-1-0_0.42.2-1build1_amd64.deb ...
116s Unpacking libpixman-1-0:amd64 (0.42.2-1build1) ...
116s Selecting previously unselected package libxcb-render0:amd64.
116s Preparing to unpack .../058-libxcb-render0_1.17.0-2_amd64.deb ...
116s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
116s Selecting previously unselected package libxcb-shm0:amd64.
116s Preparing to unpack .../059-libxcb-shm0_1.17.0-2_amd64.deb ...
116s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
116s Selecting previously unselected package libcairo2:amd64.
116s Preparing to unpack .../060-libcairo2_1.18.0-3build1_amd64.deb ...
116s Unpacking libcairo2:amd64 (1.18.0-3build1) ...
116s Selecting previously unselected package python3-cairo.
116s Preparing to unpack .../061-python3-cairo_1.26.0-1_amd64.deb ...
116s Unpacking python3-cairo (1.26.0-1) ...
116s Selecting previously unselected package python3-freetype.
116s Preparing to unpack .../062-python3-freetype_2.4.0-2_all.deb ...
116s Unpacking python3-freetype (2.4.0-2) ...
116s Selecting previously unselected package python3-rlpycairo.
116s Preparing to unpack .../063-python3-rlpycairo_0.3.0-3_all.deb ...
116s Unpacking python3-rlpycairo (0.3.0-3) ...
116s Selecting previously unselected package libfontenc1:amd64.
116s Preparing to unpack .../064-libfontenc1_1%3a1.1.8-1build1_amd64.deb ...
116s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ...
116s Selecting previously unselected package xfonts-encodings.
116s Preparing to unpack .../065-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
116s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
116s Selecting previously unselected package xfonts-utils.
116s Preparing to unpack .../066-xfonts-utils_1%3a7.7+6build3_amd64.deb ...
116s Unpacking xfonts-utils (1:7.7+6build3) ...
116s Selecting previously unselected package fonts-urw-base35.
116s Preparing to unpack .../067-fonts-urw-base35_20200910-8_all.deb ...
116s Unpacking fonts-urw-base35 (20200910-8) ...
117s Selecting previously unselected package python3-reportlab.
117s Preparing to unpack .../068-python3-reportlab_4.2.0-2_all.deb ...
117s Unpacking python3-reportlab (4.2.0-2) ...
117s Selecting previously unselected package xml-core.
117s Preparing to unpack .../069-xml-core_0.19_all.deb ...
117s Unpacking xml-core (0.19) ...
117s Selecting previously unselected package w3c-sgml-lib.
117s Preparing to unpack .../070-w3c-sgml-lib_1.3-3_all.deb ...
117s Unpacking w3c-sgml-lib (1.3-3) ...
117s Selecting previously unselected package python3-biopython.
117s Preparing to unpack .../071-python3-biopython_1.83+dfsg1-3_amd64.deb ...
117s Unpacking python3-biopython (1.83+dfsg1-3) ...
117s Selecting previously unselected package libjs-jquery.
117s Preparing to unpack .../072-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
117s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
117s Selecting previously unselected package libjs-jquery-ui.
117s Preparing to unpack .../073-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
117s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
117s Selecting previously unselected package fonts-lyx.
117s Preparing to unpack .../074-fonts-lyx_2.4.0-1_all.deb ...
117s Unpacking fonts-lyx (2.4.0-1) ...
117s Selecting previously unselected package python-matplotlib-data.
117s Preparing to unpack .../075-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ...
117s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ...
117s Selecting previously unselected package python3-dateutil.
117s Preparing to unpack .../076-python3-dateutil_2.9.0-2_all.deb ...
117s Unpacking python3-dateutil (2.9.0-2) ...
117s Selecting previously unselected package python3-contourpy.
117s Preparing to unpack .../077-python3-contourpy_1.0.7-3_amd64.deb ...
117s Unpacking python3-contourpy (1.0.7-3) ...
117s Selecting previously unselected package python3-cycler.
117s Preparing to unpack .../078-python3-cycler_0.12.1-1_all.deb ...
117s Unpacking python3-cycler (0.12.1-1) ...
117s Selecting previously unselected package python3-brotli.
117s Preparing to unpack .../079-python3-brotli_1.1.0-2build2_amd64.deb ...
117s Unpacking python3-brotli (1.1.0-2build2) ...
117s Selecting previously unselected package python3-decorator.
117s Preparing to unpack .../080-python3-decorator_5.1.1-5_all.deb ...
117s Unpacking python3-decorator (5.1.1-5) ...
117s Selecting previously unselected package liblbfgsb0:amd64.
117s Preparing to unpack .../081-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ...
117s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
117s Selecting previously unselected package python3-scipy.
117s Preparing to unpack .../082-python3-scipy_1.12.0-2_amd64.deb ...
117s Unpacking python3-scipy (1.12.0-2) ...
118s Selecting previously unselected package python3-ufolib2.
118s Preparing to unpack .../083-python3-ufolib2_0.16.0+dfsg1-1_all.deb ...
118s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
118s Selecting previously unselected package python3-mpmath.
118s Preparing to unpack .../084-python3-mpmath_1.3.0-1_all.deb ...
118s Unpacking python3-mpmath (1.3.0-1) ...
118s Selecting previously unselected package python3-sympy.
118s Preparing to unpack .../085-python3-sympy_1.12-8_all.deb ...
118s Unpacking python3-sympy (1.12-8) ...
118s Selecting previously unselected package python3-appdirs.
118s Preparing to unpack .../086-python3-appdirs_1.4.4-4_all.deb ...
118s Unpacking python3-appdirs (1.4.4-4) ...
118s Selecting previously unselected package python3-fs.
118s Preparing to unpack .../087-python3-fs_2.4.16-4_all.deb ...
118s Unpacking python3-fs (2.4.16-4) ...
118s Selecting previously unselected package libxslt1.1:amd64.
118s Preparing to unpack .../088-libxslt1.1_1.1.39-0exp1build1_amd64.deb ...
118s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ...
118s Selecting previously unselected package python3-lxml:amd64.
118s Preparing to unpack .../089-python3-lxml_5.2.1-1_amd64.deb ...
118s Unpacking python3-lxml:amd64 (5.2.1-1) ...
118s Selecting previously unselected package python3-lz4.
118s Preparing to unpack .../090-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ...
118s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ...
118s Selecting previously unselected package python3-unicodedata2.
118s Preparing to unpack .../091-python3-unicodedata2_15.1.0+ds-1build1_amd64.deb ...
118s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ...
118s Selecting previously unselected package unicode-data.
118s Preparing to unpack .../092-unicode-data_15.1.0-1_all.deb ...
118s Unpacking unicode-data (15.1.0-1) ...
119s Selecting previously unselected package python3-fonttools.
119s Preparing to unpack .../093-python3-fonttools_4.46.0-1build2_amd64.deb ...
119s Unpacking python3-fonttools (4.46.0-1build2) ...
119s Selecting previously unselected package python3-kiwisolver.
119s Preparing to unpack .../094-python3-kiwisolver_1.4.5-1_amd64.deb ...
119s Unpacking python3-kiwisolver (1.4.5-1) ...
119s Selecting previously unselected package python3-packaging.
119s Preparing to unpack .../095-python3-packaging_24.0-1_all.deb ...
119s Unpacking python3-packaging (24.0-1) ...
119s Selecting previously unselected package libqhull-r8.0:amd64.
119s Preparing to unpack .../096-libqhull-r8.0_2020.2-6build1_amd64.deb ...
119s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ...
119s Selecting previously unselected package python3-matplotlib.
119s Preparing to unpack .../097-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ...
119s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ...
119s Selecting previously unselected package python3-pandas-lib:amd64.
119s Preparing to unpack .../098-python3-pandas-lib_2.1.4+dfsg-8_amd64.deb ...
119s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-8) ...
119s Selecting previously unselected package python3-pandas.
119s Preparing to unpack .../099-python3-pandas_2.1.4+dfsg-8_all.deb ...
119s Unpacking python3-pandas (2.1.4+dfsg-8) ...
119s Selecting previously unselected package python3-joblib.
119s Preparing to unpack .../100-python3-joblib_1.3.2-2_all.deb ...
119s Unpacking python3-joblib (1.3.2-2) ...
120s Selecting previously unselected package python3-networkx.
120s Preparing to unpack .../101-python3-networkx_3.2.1-4ubuntu1_all.deb ...
120s Unpacking python3-networkx (3.2.1-4ubuntu1) ...
120s Selecting previously unselected package python3-pomegranate.
120s Preparing to unpack .../102-python3-pomegranate_0.14.8-6_amd64.deb ...
120s Unpacking python3-pomegranate (0.14.8-6) ...
120s Selecting previously unselected package python3-zipp.
120s Preparing to unpack .../103-python3-zipp_3.19.2-2_all.deb ...
120s Unpacking python3-zipp (3.19.2-2) ...
120s Selecting previously unselected package python3-importlib-metadata.
120s Preparing to unpack .../104-python3-importlib-metadata_7.1.0-1_all.deb ...
120s Unpacking python3-importlib-metadata (7.1.0-1) ...
120s Selecting previously unselected package python3-pyfaidx.
120s Preparing to unpack .../105-python3-pyfaidx_0.8.1.1-2_all.deb ...
120s Unpacking python3-pyfaidx (0.8.1.1-2) ...
120s Selecting previously unselected package libhtscodecs2:amd64.
120s Preparing to unpack .../106-libhtscodecs2_1.6.0-1build1_amd64.deb ...
120s Unpacking libhtscodecs2:amd64 (1.6.0-1build1) ...
120s Selecting previously unselected package libhts3t64:amd64.
121s Preparing to unpack .../107-libhts3t64_1.20+ds-1_amd64.deb ...
121s Unpacking libhts3t64:amd64 (1.20+ds-1) ...
121s Selecting previously unselected package python3-pysam.
121s Preparing to unpack .../108-python3-pysam_0.22.1+ds-2_amd64.deb ...
121s Unpacking python3-pysam (0.22.1+ds-2) ...
121s Selecting previously unselected package python3-threadpoolctl.
121s Preparing to unpack .../109-python3-threadpoolctl_3.1.0-1_all.deb ...
121s Unpacking python3-threadpoolctl (3.1.0-1) ...
121s Selecting previously unselected package python3-sklearn-lib:amd64.
121s Preparing to unpack .../110-python3-sklearn-lib_1.4.2+dfsg-1_amd64.deb ...
121s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-1) ...
121s Selecting previously unselected package python3-sklearn.
121s Preparing to unpack .../111-python3-sklearn_1.4.2+dfsg-1_all.deb ...
121s Unpacking python3-sklearn (1.4.2+dfsg-1) ...
121s Selecting previously unselected package zip.
121s Preparing to unpack .../112-zip_3.0-13build1_amd64.deb ...
121s Unpacking zip (3.0-13build1) ...
121s Selecting previously unselected package unzip.
121s Preparing to unpack .../113-unzip_6.0-28ubuntu5_amd64.deb ...
121s Unpacking unzip (6.0-28ubuntu5) ...
121s Selecting previously unselected package libpaper1:amd64.
121s Preparing to unpack .../114-libpaper1_1.1.29build1_amd64.deb ...
121s Unpacking libpaper1:amd64 (1.1.29build1) ...
121s Selecting previously unselected package libpaper-utils.
121s Preparing to unpack .../115-libpaper-utils_1.1.29build1_amd64.deb ...
121s Unpacking libpaper-utils (1.1.29build1) ...
121s Selecting previously unselected package xdg-utils.
121s Preparing to unpack .../116-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
121s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
121s Selecting previously unselected package fontconfig.
121s Preparing to unpack .../117-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ...
121s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
121s Selecting previously unselected package libthai-data.
121s Preparing to unpack .../118-libthai-data_0.1.29-2build1_all.deb ...
121s Unpacking libthai-data (0.1.29-2build1) ...
121s Selecting previously unselected package libdatrie1:amd64.
121s Preparing to unpack .../119-libdatrie1_0.2.13-3build1_amd64.deb ...
121s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
121s Selecting previously unselected package libthai0:amd64.
121s Preparing to unpack .../120-libthai0_0.1.29-2build1_amd64.deb ...
121s Unpacking libthai0:amd64 (0.1.29-2build1) ...
121s Selecting previously unselected package libpango-1.0-0:amd64.
121s Preparing to unpack .../121-libpango-1.0-0_1.54.0+ds-1_amd64.deb ...
121s Unpacking libpango-1.0-0:amd64 (1.54.0+ds-1) ...
121s Selecting previously unselected package libpangoft2-1.0-0:amd64.
121s Preparing to unpack .../122-libpangoft2-1.0-0_1.54.0+ds-1_amd64.deb ...
121s Unpacking libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ...
121s Selecting previously unselected package libpangocairo-1.0-0:amd64.
121s Preparing to unpack .../123-libpangocairo-1.0-0_1.54.0+ds-1_amd64.deb ...
121s Unpacking libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ...
121s Selecting previously unselected package libice6:amd64.
121s Preparing to unpack .../124-libice6_2%3a1.0.10-1build3_amd64.deb ...
121s Unpacking libice6:amd64 (2:1.0.10-1build3) ...
122s Selecting previously unselected package libsm6:amd64.
122s Preparing to unpack .../125-libsm6_2%3a1.2.3-1build3_amd64.deb ...
122s Unpacking libsm6:amd64 (2:1.2.3-1build3) ...
122s Selecting previously unselected package libxt6t64:amd64.
122s Preparing to unpack .../126-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ...
122s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ...
122s Selecting previously unselected package r-base-core.
122s Preparing to unpack .../127-r-base-core_4.4.1-1_amd64.deb ...
122s Unpacking r-base-core (4.4.1-1) ...
122s Selecting previously unselected package r-bioc-biocgenerics.
122s Preparing to unpack .../128-r-bioc-biocgenerics_0.48.1-2_all.deb ...
122s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
122s Selecting previously unselected package r-bioc-dnacopy.
122s Preparing to unpack .../129-r-bioc-dnacopy_1.76.0-1_amd64.deb ...
122s Unpacking r-bioc-dnacopy (1.76.0-1) ...
122s Selecting previously unselected package cnvkit.
122s Preparing to unpack .../130-cnvkit_0.9.10-2_all.deb ...
122s Unpacking cnvkit (0.9.10-2) ...
123s Selecting previously unselected package python3-xopen.
123s Preparing to unpack .../131-python3-xopen_1.7.0-2_all.deb ...
123s Unpacking python3-xopen (1.7.0-2) ...
123s Selecting previously unselected package python3-dnaio.
123s Preparing to unpack .../132-python3-dnaio_1.2.0-2build1_amd64.deb ...
123s Unpacking python3-dnaio (1.2.0-2build1) ...
123s Selecting previously unselected package python3-cutadapt.
123s Preparing to unpack .../133-python3-cutadapt_4.7-2_amd64.deb ...
123s Unpacking python3-cutadapt (4.7-2) ...
123s Selecting previously unselected package cutadapt.
123s Preparing to unpack .../134-cutadapt_4.7-2_all.deb ...
123s Unpacking cutadapt (4.7-2) ...
123s Selecting previously unselected package diamond-aligner.
123s Preparing to unpack .../135-diamond-aligner_2.1.9-1_amd64.deb ...
123s Unpacking diamond-aligner (2.1.9-1) ...
123s Selecting previously unselected package emboss-data.
123s Preparing to unpack .../136-emboss-data_6.6.0+dfsg-12ubuntu2_all.deb ...
123s Unpacking emboss-data (6.6.0+dfsg-12ubuntu2) ...
126s Selecting previously unselected package emboss-test.
126s Preparing to unpack .../137-emboss-test_6.6.0+dfsg-12ubuntu2_all.deb ...
126s Unpacking emboss-test (6.6.0+dfsg-12ubuntu2) ...
126s Selecting previously unselected package fonts-font-awesome.
126s Preparing to unpack .../138-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
126s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
126s Selecting previously unselected package fonts-glyphicons-halflings.
126s Preparing to unpack .../139-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
126s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
126s Selecting previously unselected package fonts-mathjax.
126s Preparing to unpack .../140-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
126s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
126s Selecting previously unselected package libgd-perl.
126s Preparing to unpack .../141-libgd-perl_2.78-1build3_amd64.deb ...
126s Unpacking libgd-perl (2.78-1build3) ...
126s Selecting previously unselected package libdevel-symdump-perl.
126s Preparing to unpack .../142-libdevel-symdump-perl_2.18-5_all.deb ...
126s Unpacking libdevel-symdump-perl (2.18-5) ...
126s Selecting previously unselected package liburi-perl.
126s Preparing to unpack .../143-liburi-perl_5.28-1_all.deb ...
126s Unpacking liburi-perl (5.28-1) ...
126s Selecting previously unselected package libencode-locale-perl.
126s Preparing to unpack .../144-libencode-locale-perl_1.05-3_all.deb ...
126s Unpacking libencode-locale-perl (1.05-3) ...
126s Selecting previously unselected package libtimedate-perl.
126s Preparing to unpack .../145-libtimedate-perl_2.3300-2_all.deb ...
126s Unpacking libtimedate-perl (2.3300-2) ...
126s Selecting previously unselected package libhttp-date-perl.
127s Preparing to unpack .../146-libhttp-date-perl_6.06-1_all.deb ...
127s Unpacking libhttp-date-perl (6.06-1) ...
127s Selecting previously unselected package libfile-listing-perl.
127s Preparing to unpack .../147-libfile-listing-perl_6.16-1_all.deb ...
127s Unpacking libfile-listing-perl (6.16-1) ...
127s Selecting previously unselected package libhtml-tagset-perl.
127s Preparing to unpack .../148-libhtml-tagset-perl_3.24-1_all.deb ...
127s Unpacking libhtml-tagset-perl (3.24-1) ...
127s Selecting previously unselected package libhtml-parser-perl:amd64.
127s Preparing to unpack .../149-libhtml-parser-perl_3.82-1_amd64.deb ...
127s Unpacking libhtml-parser-perl:amd64 (3.82-1) ...
127s Selecting previously unselected package libhtml-tree-perl.
127s Preparing to unpack .../150-libhtml-tree-perl_5.07-3_all.deb ...
127s Unpacking libhtml-tree-perl (5.07-3) ...
127s Selecting previously unselected package libclone-perl:amd64.
127s Preparing to unpack .../151-libclone-perl_0.46-1build3_amd64.deb ...
127s Unpacking libclone-perl:amd64 (0.46-1build3) ...
127s Selecting previously unselected package libio-html-perl.
127s Preparing to unpack .../152-libio-html-perl_1.004-3_all.deb ...
127s Unpacking libio-html-perl (1.004-3) ...
127s Selecting previously unselected package liblwp-mediatypes-perl.
127s Preparing to unpack .../153-liblwp-mediatypes-perl_6.04-2_all.deb ...
127s Unpacking liblwp-mediatypes-perl (6.04-2) ...
127s Selecting previously unselected package libhttp-message-perl.
127s Preparing to unpack .../154-libhttp-message-perl_6.45-1ubuntu1_all.deb ...
127s Unpacking libhttp-message-perl (6.45-1ubuntu1) ...
127s Selecting previously unselected package libhttp-cookies-perl.
127s Preparing to unpack .../155-libhttp-cookies-perl_6.11-1_all.deb ...
127s Unpacking libhttp-cookies-perl (6.11-1) ...
127s Selecting previously unselected package libhttp-negotiate-perl.
127s Preparing to unpack .../156-libhttp-negotiate-perl_6.01-2_all.deb ...
127s Unpacking libhttp-negotiate-perl (6.01-2) ...
127s Selecting previously unselected package perl-openssl-defaults:amd64.
127s Preparing to unpack .../157-perl-openssl-defaults_7build3_amd64.deb ...
127s Unpacking perl-openssl-defaults:amd64 (7build3) ...
127s Selecting previously unselected package libnet-ssleay-perl:amd64.
127s Preparing to unpack .../158-libnet-ssleay-perl_1.94-1build4_amd64.deb ...
127s Unpacking libnet-ssleay-perl:amd64 (1.94-1build4) ...
127s Selecting previously unselected package libio-socket-ssl-perl.
127s Preparing to unpack .../159-libio-socket-ssl-perl_2.085-1_all.deb ...
127s Unpacking libio-socket-ssl-perl (2.085-1) ...
127s Selecting previously unselected package libnet-http-perl.
127s Preparing to unpack .../160-libnet-http-perl_6.23-1_all.deb ...
127s Unpacking libnet-http-perl (6.23-1) ...
127s Selecting previously unselected package liblwp-protocol-https-perl.
127s Preparing to unpack .../161-liblwp-protocol-https-perl_6.14-1_all.deb ...
127s Unpacking liblwp-protocol-https-perl (6.14-1) ...
127s Selecting previously unselected package libtry-tiny-perl.
127s Preparing to unpack .../162-libtry-tiny-perl_0.31-2_all.deb ...
127s Unpacking libtry-tiny-perl (0.31-2) ...
127s Selecting previously unselected package libwww-robotrules-perl.
127s Preparing to unpack .../163-libwww-robotrules-perl_6.02-1_all.deb ...
127s Unpacking libwww-robotrules-perl (6.02-1) ...
127s Selecting previously unselected package libwww-perl.
127s Preparing to unpack .../164-libwww-perl_6.77-1_all.deb ...
127s Unpacking libwww-perl (6.77-1) ...
127s Selecting previously unselected package libapache2-mod-perl2.
127s Preparing to unpack .../165-libapache2-mod-perl2_2.0.13-1build5_amd64.deb ...
127s Unpacking libapache2-mod-perl2 (2.0.13-1build5) ...
127s Selecting previously unselected package libdbi-perl:amd64.
127s Preparing to unpack .../166-libdbi-perl_1.643-4build3_amd64.deb ...
127s Unpacking libdbi-perl:amd64 (1.643-4build3) ...
127s Selecting previously unselected package libapache-dbi-perl.
127s Preparing to unpack .../167-libapache-dbi-perl_1.12-3_all.deb ...
127s Unpacking libapache-dbi-perl (1.12-3) ...
127s Selecting previously unselected package libbio-db-biofetch-perl.
127s Preparing to unpack .../168-libbio-db-biofetch-perl_1.7.3-4_all.deb ...
127s Unpacking libbio-db-biofetch-perl (1.7.3-4) ...
127s Selecting previously unselected package libcgi-pm-perl.
127s Preparing to unpack .../169-libcgi-pm-perl_4.65-1_all.deb ...
127s Unpacking libcgi-pm-perl (4.65-1) ...
127s Selecting previously unselected package libbio-db-gff-perl.
127s Preparing to unpack .../170-libbio-db-gff-perl_1.7.4-1_all.deb ...
127s Unpacking libbio-db-gff-perl (1.7.4-1) ...
127s Selecting previously unselected package libpq5:amd64.
127s Preparing to unpack .../171-libpq5_16.3-1_amd64.deb ...
127s Unpacking libpq5:amd64 (16.3-1) ...
127s Selecting previously unselected package libdbd-pg-perl.
127s Preparing to unpack .../172-libdbd-pg-perl_3.18.0-1build3_amd64.deb ...
127s Unpacking libdbd-pg-perl (3.18.0-1build3) ...
127s Selecting previously unselected package libdbd-sqlite3-perl:amd64.
127s Preparing to unpack .../173-libdbd-sqlite3-perl_1.74-1build3_amd64.deb ...
127s Unpacking libdbd-sqlite3-perl:amd64 (1.74-1build3) ...
128s Selecting previously unselected package libbio-db-seqfeature-perl.
128s Preparing to unpack .../174-libbio-db-seqfeature-perl_1.7.4-2_all.deb ...
128s Unpacking libbio-db-seqfeature-perl (1.7.4-2) ...
128s Selecting previously unselected package libbio-graphics-perl.
128s Preparing to unpack .../175-libbio-graphics-perl_2.40-6_all.deb ...
128s Unpacking libbio-graphics-perl (2.40-6) ...
128s Selecting previously unselected package libbio-coordinate-perl.
128s Preparing to unpack .../176-libbio-coordinate-perl_1.7.1-4_all.deb ...
128s Unpacking libbio-coordinate-perl (1.7.1-4) ...
128s Selecting previously unselected package libcgi-session-perl.
128s Preparing to unpack .../177-libcgi-session-perl_4.48-4_all.deb ...
128s Unpacking libcgi-session-perl (4.48-4) ...
128s Selecting previously unselected package libjson-perl.
128s Preparing to unpack .../178-libjson-perl_4.10000-1_all.deb ...
128s Unpacking libjson-perl (4.10000-1) ...
128s Selecting previously unselected package libexporter-tiny-perl.
128s Preparing to unpack .../179-libexporter-tiny-perl_1.006002-1_all.deb ...
128s Unpacking libexporter-tiny-perl (1.006002-1) ...
128s Selecting previously unselected package liblist-moreutils-xs-perl.
128s Preparing to unpack .../180-liblist-moreutils-xs-perl_0.430-4_amd64.deb ...
128s Unpacking liblist-moreutils-xs-perl (0.430-4) ...
128s Selecting previously unselected package liblist-moreutils-perl.
128s Preparing to unpack .../181-liblist-moreutils-perl_0.430-2_all.deb ...
128s Unpacking liblist-moreutils-perl (0.430-2) ...
128s Selecting previously unselected package libstatistics-descriptive-perl.
128s Preparing to unpack .../182-libstatistics-descriptive-perl_3.0801-1_all.deb ...
128s Unpacking libstatistics-descriptive-perl (3.0801-1) ...
128s Selecting previously unselected package libhttp-daemon-perl.
128s Preparing to unpack .../183-libhttp-daemon-perl_6.16-1_all.deb ...
128s Unpacking libhttp-daemon-perl (6.16-1) ...
128s Selecting previously unselected package libterm-readkey-perl.
128s Preparing to unpack .../184-libterm-readkey-perl_2.38-2build4_amd64.deb ...
128s Unpacking libterm-readkey-perl (2.38-2build4) ...
128s Selecting previously unselected package sqlite3.
128s Preparing to unpack .../185-sqlite3_3.46.0-1_amd64.deb ...
128s Unpacking sqlite3 (3.46.0-1) ...
128s Selecting previously unselected package libjs-prototype.
128s Preparing to unpack .../186-libjs-prototype_1.7.3-1_all.deb ...
128s Unpacking libjs-prototype (1.7.3-1) ...
128s Selecting previously unselected package libjs-scriptaculous.
128s Preparing to unpack .../187-libjs-scriptaculous_1.9.0-3_all.deb ...
128s Unpacking libjs-scriptaculous (1.9.0-3) ...
128s Selecting previously unselected package libanyevent-perl.
128s Preparing to unpack .../188-libanyevent-perl_7.170-2build6_amd64.deb ...
128s Unpacking libanyevent-perl (7.170-2build6) ...
128s Selecting previously unselected package libanyevent-cachedns-perl.
128s Preparing to unpack .../189-libanyevent-cachedns-perl_0.08-3_all.deb ...
128s Unpacking libanyevent-cachedns-perl (0.08-3) ...
128s Selecting previously unselected package libcommon-sense-perl:amd64.
128s Preparing to unpack .../190-libcommon-sense-perl_3.75-3build3_amd64.deb ...
128s Unpacking libcommon-sense-perl:amd64 (3.75-3build3) ...
128s Selecting previously unselected package libanyevent-http-perl.
128s Preparing to unpack .../191-libanyevent-http-perl_2.25-2_all.deb ...
128s Unpacking libanyevent-http-perl (2.25-2) ...
128s Selecting previously unselected package libstring-approx-perl.
128s Preparing to unpack .../192-libstring-approx-perl_3.28-2build4_amd64.deb ...
128s Unpacking libstring-approx-perl (3.28-2build4) ...
128s Selecting previously unselected package libxml-namespacesupport-perl.
128s Preparing to unpack .../193-libxml-namespacesupport-perl_1.12-2_all.deb ...
128s Unpacking libxml-namespacesupport-perl (1.12-2) ...
128s Selecting previously unselected package libxml-sax-base-perl.
128s Preparing to unpack .../194-libxml-sax-base-perl_1.09-3_all.deb ...
128s Unpacking libxml-sax-base-perl (1.09-3) ...
128s Selecting previously unselected package libxml-sax-perl.
128s Preparing to unpack .../195-libxml-sax-perl_1.02+dfsg-3_all.deb ...
128s Unpacking libxml-sax-perl (1.02+dfsg-3) ...
128s Selecting previously unselected package libxml-libxml-perl.
128s Preparing to unpack .../196-libxml-libxml-perl_2.0207+dfsg+really+2.0134-2_amd64.deb ...
128s Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ...
128s Selecting previously unselected package libxml-simple-perl.
128s Preparing to unpack .../197-libxml-simple-perl_2.25-2_all.deb ...
128s Unpacking libxml-simple-perl (2.25-2) ...
128s Selecting previously unselected package libvm-ec2-perl.
128s Preparing to unpack .../198-libvm-ec2-perl_1.28-4_all.deb ...
128s Unpacking libvm-ec2-perl (1.28-4) ...
128s Selecting previously unselected package gbrowse.
128s Preparing to unpack .../199-gbrowse_2.56+dfsg-12build3_all.deb ...
128s Unpacking gbrowse (2.56+dfsg-12build3) ...
129s Selecting previously unselected package gcc-13-base:amd64.
129s Preparing to unpack .../200-gcc-13-base_13.2.0-23ubuntu4_amd64.deb ...
129s Unpacking gcc-13-base:amd64 (13.2.0-23ubuntu4) ...
129s Selecting previously unselected package gff2aplot.
129s Preparing to unpack .../201-gff2aplot_2.0-15_amd64.deb ...
129s Unpacking gff2aplot (2.0-15) ...
129s Selecting previously unselected package gff2ps.
129s Preparing to unpack .../202-gff2ps_0.98l-6_all.deb ...
129s Unpacking gff2ps (0.98l-6) ...
129s Selecting previously unselected package libgclib3t64:amd64.
129s Preparing to unpack .../203-libgclib3t64_0.12.7+ds-5ubuntu3_amd64.deb ...
129s Unpacking libgclib3t64:amd64 (0.12.7+ds-5ubuntu3) ...
129s Selecting previously unselected package gffread.
129s Preparing to unpack .../204-gffread_0.12.7-5_amd64.deb ...
129s Unpacking gffread (0.12.7-5) ...
129s Selecting previously unselected package htslib-test.
129s Preparing to unpack .../205-htslib-test_1.20+ds-1_all.deb ...
129s Unpacking htslib-test (1.20+ds-1) ...
129s Selecting previously unselected package javascript-common.
129s Preparing to unpack .../206-javascript-common_11+nmu1_all.deb ...
129s Unpacking javascript-common (11+nmu1) ...
129s Selecting previously unselected package libasan8:amd64.
129s Preparing to unpack .../207-libasan8_14.1.0-1ubuntu1_amd64.deb ...
129s Unpacking libasan8:amd64 (14.1.0-1ubuntu1) ...
129s Selecting previously unselected package libatomic1:amd64.
129s Preparing to unpack .../208-libatomic1_14.1.0-1ubuntu1_amd64.deb ...
129s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ...
129s Selecting previously unselected package libitm1:amd64.
129s Preparing to unpack .../209-libitm1_14.1.0-1ubuntu1_amd64.deb ...
129s Unpacking libitm1:amd64 (14.1.0-1ubuntu1) ...
129s Selecting previously unselected package liblsan0:amd64.
129s Preparing to unpack .../210-liblsan0_14.1.0-1ubuntu1_amd64.deb ...
129s Unpacking liblsan0:amd64 (14.1.0-1ubuntu1) ...
129s Selecting previously unselected package libtsan2:amd64.
129s Preparing to unpack .../211-libtsan2_14.1.0-1ubuntu1_amd64.deb ...
129s Unpacking libtsan2:amd64 (14.1.0-1ubuntu1) ...
129s Selecting previously unselected package libubsan1:amd64.
129s Preparing to unpack .../212-libubsan1_14.1.0-1ubuntu1_amd64.deb ...
129s Unpacking libubsan1:amd64 (14.1.0-1ubuntu1) ...
129s Selecting previously unselected package libhwasan0:amd64.
129s Preparing to unpack .../213-libhwasan0_14.1.0-1ubuntu1_amd64.deb ...
129s Unpacking libhwasan0:amd64 (14.1.0-1ubuntu1) ...
129s Selecting previously unselected package libquadmath0:amd64.
129s Preparing to unpack .../214-libquadmath0_14.1.0-1ubuntu1_amd64.deb ...
129s Unpacking libquadmath0:amd64 (14.1.0-1ubuntu1) ...
129s Selecting previously unselected package libgcc-13-dev:amd64.
129s Preparing to unpack .../215-libgcc-13-dev_13.2.0-23ubuntu4_amd64.deb ...
129s Unpacking libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ...
129s Selecting previously unselected package libstdc++-13-dev:amd64.
129s Preparing to unpack .../216-libstdc++-13-dev_13.2.0-23ubuntu4_amd64.deb ...
129s Unpacking libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ...
130s Selecting previously unselected package libboost1.83-dev:amd64.
130s Preparing to unpack .../217-libboost1.83-dev_1.83.0-3ubuntu1_amd64.deb ...
130s Unpacking libboost1.83-dev:amd64 (1.83.0-3ubuntu1) ...
132s Selecting previously unselected package libboost-dev:amd64.
132s Preparing to unpack .../218-libboost-dev_1.83.0.1ubuntu2_amd64.deb ...
132s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ...
132s Selecting previously unselected package libjs-bootstrap.
132s Preparing to unpack .../219-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
132s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
132s Selecting previously unselected package libjs-popper.js.
132s Preparing to unpack .../220-libjs-popper.js_1.16.1+ds-6_all.deb ...
132s Unpacking libjs-popper.js (1.16.1+ds-6) ...
132s Selecting previously unselected package libjs-bootstrap4.
132s Preparing to unpack .../221-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
132s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
132s Selecting previously unselected package libjs-d3.
132s Preparing to unpack .../222-libjs-d3_3.5.17-4_all.deb ...
132s Unpacking libjs-d3 (3.5.17-4) ...
132s Selecting previously unselected package libjs-es5-shim.
132s Preparing to unpack .../223-libjs-es5-shim_4.6.7-2_all.deb ...
132s Unpacking libjs-es5-shim (4.6.7-2) ...
132s Selecting previously unselected package libjs-highlight.js.
132s Preparing to unpack .../224-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
132s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
132s Selecting previously unselected package libjs-jquery-datatables.
132s Preparing to unpack .../225-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
132s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
132s Selecting previously unselected package libjs-sifter.js.
132s Preparing to unpack .../226-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
132s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
132s Selecting previously unselected package libjs-microplugin.js.
132s Preparing to unpack .../227-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ...
132s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ...
132s Selecting previously unselected package libjs-jquery-selectize.js.
133s Preparing to unpack .../228-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
133s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
133s Selecting previously unselected package libjs-json.
133s Preparing to unpack .../229-libjs-json_0~20221030+~1.0.8-1_all.deb ...
133s Unpacking libjs-json (0~20221030+~1.0.8-1) ...
133s Selecting previously unselected package libjs-prettify.
133s Preparing to unpack .../230-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ...
133s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ...
133s Selecting previously unselected package liblua5.1-0:amd64.
133s Preparing to unpack .../231-liblua5.1-0_5.1.5-9build2_amd64.deb ...
133s Unpacking liblua5.1-0:amd64 (5.1.5-9build2) ...
133s Selecting previously unselected package libmbedcrypto7t64:amd64.
133s Preparing to unpack .../232-libmbedcrypto7t64_2.28.8-1_amd64.deb ...
133s Unpacking libmbedcrypto7t64:amd64 (2.28.8-1) ...
133s Selecting previously unselected package libmbedx509-1t64:amd64.
133s Preparing to unpack .../233-libmbedx509-1t64_2.28.8-1_amd64.deb ...
133s Unpacking libmbedx509-1t64:amd64 (2.28.8-1) ...
133s Selecting previously unselected package libmbedtls14t64:amd64.
133s Preparing to unpack .../234-libmbedtls14t64_2.28.8-1_amd64.deb ...
133s Unpacking libmbedtls14t64:amd64 (2.28.8-1) ...
133s Selecting previously unselected package libssw0:amd64.
133s Preparing to unpack .../235-libssw0_1.1-14build1_amd64.deb ...
133s Unpacking libssw0:amd64 (1.1-14build1) ...
133s Selecting previously unselected package libtre5:amd64.
133s Preparing to unpack .../236-libtre5_0.8.0-7_amd64.deb ...
133s Unpacking libtre5:amd64 (0.8.0-7) ...
133s Selecting previously unselected package ncbi-data.
133s Preparing to unpack .../237-ncbi-data_6.1.20170106+dfsg2-2_all.deb ...
133s Unpacking ncbi-data (6.1.20170106+dfsg2-2) ...
133s Selecting previously unselected package ncbi-blast+.
133s Preparing to unpack .../238-ncbi-blast+_2.12.0+ds-4build2_amd64.deb ...
133s Unpacking ncbi-blast+ (2.12.0+ds-4build2) ...
133s Selecting previously unselected package node-bootstrap-sass.
133s Preparing to unpack .../239-node-bootstrap-sass_3.4.3-2_all.deb ...
133s Unpacking node-bootstrap-sass (3.4.3-2) ...
133s Selecting previously unselected package node-html5shiv.
133s Preparing to unpack .../240-node-html5shiv_3.7.3+dfsg-5_all.deb ...
133s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
133s Selecting previously unselected package node-normalize.css.
133s Preparing to unpack .../241-node-normalize.css_8.0.1-5_all.deb ...
133s Unpacking node-normalize.css (8.0.1-5) ...
134s Selecting previously unselected package bowtie2.
134s Preparing to unpack .../242-bowtie2_2.5.3-1_amd64.deb ...
134s Unpacking bowtie2 (2.5.3-1) ...
134s Selecting previously unselected package samtools.
134s Preparing to unpack .../243-samtools_1.20-3_amd64.deb ...
134s Unpacking samtools (1.20-3) ...
134s Selecting previously unselected package optimir.
134s Preparing to unpack .../244-optimir_1.2-1_all.deb ...
134s Unpacking optimir (1.2-1) ...
134s Selecting previously unselected package pandoc-data.
134s Preparing to unpack .../245-pandoc-data_3.1.3-2build2_all.deb ...
134s Unpacking pandoc-data (3.1.3-2build2) ...
134s Selecting previously unselected package pandoc.
134s Preparing to unpack .../246-pandoc_3.1.3+ds-3build1_amd64.deb ...
134s Unpacking pandoc (3.1.3+ds-3build1) ...
135s Selecting previously unselected package proteinortho.
135s Preparing to unpack .../247-proteinortho_6.3.1+dfsg-1_amd64.deb ...
135s Unpacking proteinortho (6.3.1+dfsg-1) ...
135s Selecting previously unselected package python3-argcomplete.
135s Preparing to unpack .../248-python3-argcomplete_3.4.0-1_all.deb ...
135s Unpacking python3-argcomplete (3.4.0-1) ...
135s Selecting previously unselected package python3-argh.
135s Preparing to unpack .../249-python3-argh_0.31.2-1_all.deb ...
135s Unpacking python3-argh (0.31.2-1) ...
135s Selecting previously unselected package python3-simplejson.
135s Preparing to unpack .../250-python3-simplejson_3.19.2-1build2_amd64.deb ...
135s Unpacking python3-simplejson (3.19.2-1build2) ...
135s Selecting previously unselected package python3-gffutils.
135s Preparing to unpack .../251-python3-gffutils_0.13-1_all.deb ...
135s Unpacking python3-gffutils (0.13-1) ...
135s Selecting previously unselected package python3-pybedtools.
135s Preparing to unpack .../252-python3-pybedtools_0.10.0-1_amd64.deb ...
135s Unpacking python3-pybedtools (0.10.0-1) ...
135s Selecting previously unselected package r-bioc-biobase.
135s Preparing to unpack .../253-r-bioc-biobase_2.62.0-1_amd64.deb ...
135s Unpacking r-bioc-biobase (2.62.0-1) ...
135s Selecting previously unselected package r-bioc-s4vectors.
135s Preparing to unpack .../254-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ...
135s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
135s Selecting previously unselected package r-bioc-iranges.
135s Preparing to unpack .../255-r-bioc-iranges_2.36.0-1_amd64.deb ...
135s Unpacking r-bioc-iranges (2.36.0-1) ...
135s Selecting previously unselected package r-cran-dbi.
135s Preparing to unpack .../256-r-cran-dbi_1.2.3-1_all.deb ...
135s Unpacking r-cran-dbi (1.2.3-1) ...
135s Selecting previously unselected package r-cran-bit.
135s Preparing to unpack .../257-r-cran-bit_4.0.5-1_amd64.deb ...
135s Unpacking r-cran-bit (4.0.5-1) ...
135s Selecting previously unselected package r-cran-bit64.
135s Preparing to unpack .../258-r-cran-bit64_4.0.5-1_amd64.deb ...
135s Unpacking r-cran-bit64 (4.0.5-1) ...
135s Selecting previously unselected package r-cran-rlang.
135s Preparing to unpack .../259-r-cran-rlang_1.1.4-1_amd64.deb ...
135s Unpacking r-cran-rlang (1.1.4-1) ...
135s Selecting previously unselected package r-cran-cli.
135s Preparing to unpack .../260-r-cran-cli_3.6.2-1_amd64.deb ...
135s Unpacking r-cran-cli (3.6.2-1) ...
136s Selecting previously unselected package r-cran-glue.
136s Preparing to unpack .../261-r-cran-glue_1.7.0-1_amd64.deb ...
136s Unpacking r-cran-glue (1.7.0-1) ...
136s Selecting previously unselected package r-cran-lifecycle.
136s Preparing to unpack .../262-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
136s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
136s Selecting previously unselected package r-cran-vctrs.
136s Preparing to unpack .../263-r-cran-vctrs_0.6.5-1_amd64.deb ...
136s Unpacking r-cran-vctrs (0.6.5-1) ...
136s Selecting previously unselected package r-cran-blob.
136s Preparing to unpack .../264-r-cran-blob_1.2.4-1_all.deb ...
136s Unpacking r-cran-blob (1.2.4-1) ...
136s Selecting previously unselected package r-cran-fastmap.
136s Preparing to unpack .../265-r-cran-fastmap_1.1.1-1_amd64.deb ...
136s Unpacking r-cran-fastmap (1.1.1-1) ...
136s Selecting previously unselected package r-cran-cachem.
136s Preparing to unpack .../266-r-cran-cachem_1.0.8-1_amd64.deb ...
136s Unpacking r-cran-cachem (1.0.8-1) ...
136s Selecting previously unselected package r-cran-memoise.
136s Preparing to unpack .../267-r-cran-memoise_2.0.1-1_all.deb ...
136s Unpacking r-cran-memoise (2.0.1-1) ...
136s Selecting previously unselected package r-cran-pkgconfig.
136s Preparing to unpack .../268-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
136s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
136s Selecting previously unselected package r-cran-plogr.
136s Preparing to unpack .../269-r-cran-plogr_0.2.0-3build1_all.deb ...
136s Unpacking r-cran-plogr (0.2.0-3build1) ...
136s Selecting previously unselected package r-cran-cpp11.
136s Preparing to unpack .../270-r-cran-cpp11_0.4.7-1_all.deb ...
136s Unpacking r-cran-cpp11 (0.4.7-1) ...
136s Selecting previously unselected package r-cran-rsqlite.
136s Preparing to unpack .../271-r-cran-rsqlite_2.3.7-1_amd64.deb ...
136s Unpacking r-cran-rsqlite (2.3.7-1) ...
136s Selecting previously unselected package r-cran-curl.
136s Preparing to unpack .../272-r-cran-curl_5.2.1+dfsg-1_amd64.deb ...
136s Unpacking r-cran-curl (5.2.1+dfsg-1) ...
136s Selecting previously unselected package r-cran-jsonlite.
136s Preparing to unpack .../273-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ...
136s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
136s Selecting previously unselected package r-cran-mime.
136s Preparing to unpack .../274-r-cran-mime_0.12-2_amd64.deb ...
136s Unpacking r-cran-mime (0.12-2) ...
136s Selecting previously unselected package r-cran-sys.
136s Preparing to unpack .../275-r-cran-sys_3.4.2-1_amd64.deb ...
136s Unpacking r-cran-sys (3.4.2-1) ...
136s Selecting previously unselected package r-cran-askpass.
136s Preparing to unpack .../276-r-cran-askpass_1.2.0-1_amd64.deb ...
136s Unpacking r-cran-askpass (1.2.0-1) ...
136s Selecting previously unselected package r-cran-openssl.
136s Preparing to unpack .../277-r-cran-openssl_2.1.1+dfsg-2build2_amd64.deb ...
136s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ...
136s Selecting previously unselected package r-cran-r6.
136s Preparing to unpack .../278-r-cran-r6_2.5.1-1_all.deb ...
136s Unpacking r-cran-r6 (2.5.1-1) ...
136s Selecting previously unselected package r-cran-httr.
136s Preparing to unpack .../279-r-cran-httr_1.4.7+dfsg-1_all.deb ...
136s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
136s Selecting previously unselected package r-cran-png.
136s Preparing to unpack .../280-r-cran-png_0.1-8-1build2_amd64.deb ...
136s Unpacking r-cran-png (0.1-8-1build2) ...
136s Selecting previously unselected package zlib1g-dev:amd64.
136s Preparing to unpack .../281-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_amd64.deb ...
136s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ...
136s Selecting previously unselected package r-bioc-zlibbioc.
136s Preparing to unpack .../282-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
136s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
137s Selecting previously unselected package r-bioc-xvector.
137s Preparing to unpack .../283-r-bioc-xvector_0.42.0-1_amd64.deb ...
137s Unpacking r-bioc-xvector (0.42.0-1) ...
137s Selecting previously unselected package r-cran-bitops.
137s Preparing to unpack .../284-r-cran-bitops_1.0-7-1_amd64.deb ...
137s Unpacking r-cran-bitops (1.0-7-1) ...
137s Selecting previously unselected package r-cran-rcurl.
137s Preparing to unpack .../285-r-cran-rcurl_1.98-1.14+dfsg-1build2_amd64.deb ...
137s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build2) ...
137s Selecting previously unselected package r-bioc-genomeinfodbdata.
137s Preparing to unpack .../286-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
137s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
137s Selecting previously unselected package r-bioc-genomeinfodb.
137s Preparing to unpack .../287-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
137s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
137s Selecting previously unselected package r-cran-crayon.
137s Preparing to unpack .../288-r-cran-crayon_1.5.2-1_all.deb ...
137s Unpacking r-cran-crayon (1.5.2-1) ...
137s Selecting previously unselected package r-bioc-biostrings.
137s Preparing to unpack .../289-r-bioc-biostrings_2.70.3+dfsg-1_amd64.deb ...
137s Unpacking r-bioc-biostrings (2.70.3+dfsg-1) ...
137s Selecting previously unselected package r-bioc-keggrest.
137s Preparing to unpack .../290-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
137s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
137s Selecting previously unselected package r-bioc-annotationdbi.
137s Preparing to unpack .../291-r-bioc-annotationdbi_1.64.1-1_all.deb ...
137s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
137s Selecting previously unselected package r-bioc-genomicranges.
137s Preparing to unpack .../292-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ...
137s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ...
137s Selecting previously unselected package r-cran-lazyeval.
137s Preparing to unpack .../293-r-cran-lazyeval_0.2.2-1build1_amd64.deb ...
137s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
137s Selecting previously unselected package r-bioc-annotationfilter.
137s Preparing to unpack .../294-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ...
137s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ...
137s Selecting previously unselected package r-cran-generics.
137s Preparing to unpack .../295-r-cran-generics_0.1.3-1_all.deb ...
137s Unpacking r-cran-generics (0.1.3-1) ...
137s Selecting previously unselected package r-cran-magrittr.
137s Preparing to unpack .../296-r-cran-magrittr_2.0.3-1_amd64.deb ...
137s Unpacking r-cran-magrittr (2.0.3-1) ...
137s Selecting previously unselected package r-cran-fansi.
137s Preparing to unpack .../297-r-cran-fansi_1.0.5-1_amd64.deb ...
137s Unpacking r-cran-fansi (1.0.5-1) ...
137s Selecting previously unselected package r-cran-utf8.
137s Preparing to unpack .../298-r-cran-utf8_1.2.4-1_amd64.deb ...
137s Unpacking r-cran-utf8 (1.2.4-1) ...
137s Selecting previously unselected package r-cran-pillar.
137s Preparing to unpack .../299-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
137s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
138s Selecting previously unselected package r-cran-tibble.
138s Preparing to unpack .../300-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ...
138s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
138s Selecting previously unselected package r-cran-withr.
138s Preparing to unpack .../301-r-cran-withr_2.5.0-1_all.deb ...
138s Unpacking r-cran-withr (2.5.0-1) ...
138s Selecting previously unselected package r-cran-tidyselect.
138s Preparing to unpack .../302-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ...
138s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
138s Selecting previously unselected package r-cran-dplyr.
138s Preparing to unpack .../303-r-cran-dplyr_1.1.4-1_amd64.deb ...
138s Unpacking r-cran-dplyr (1.1.4-1) ...
138s Selecting previously unselected package r-cran-purrr.
138s Preparing to unpack .../304-r-cran-purrr_1.0.2-1_amd64.deb ...
138s Unpacking r-cran-purrr (1.0.2-1) ...
138s Selecting previously unselected package r-cran-stringi.
138s Preparing to unpack .../305-r-cran-stringi_1.8.3-1_amd64.deb ...
138s Unpacking r-cran-stringi (1.8.3-1) ...
138s Selecting previously unselected package r-cran-stringr.
138s Preparing to unpack .../306-r-cran-stringr_1.5.1-1_all.deb ...
138s Unpacking r-cran-stringr (1.5.1-1) ...
138s Selecting previously unselected package r-cran-tidyr.
138s Preparing to unpack .../307-r-cran-tidyr_1.3.1-1_amd64.deb ...
138s Unpacking r-cran-tidyr (1.3.1-1) ...
138s Selecting previously unselected package r-cran-dbplyr.
138s Preparing to unpack .../308-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ...
138s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ...
138s Selecting previously unselected package r-cran-filelock.
138s Preparing to unpack .../309-r-cran-filelock_1.0.3-1_amd64.deb ...
138s Unpacking r-cran-filelock (1.0.3-1) ...
138s Selecting previously unselected package r-bioc-biocfilecache.
138s Preparing to unpack .../310-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ...
138s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ...
138s Selecting previously unselected package r-bioc-biocio.
138s Preparing to unpack .../311-r-bioc-biocio_1.12.0+dfsg-1_all.deb ...
138s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ...
138s Selecting previously unselected package r-cran-formatr.
138s Preparing to unpack .../312-r-cran-formatr_1.14-2_all.deb ...
138s Unpacking r-cran-formatr (1.14-2) ...
138s Selecting previously unselected package r-cran-lambda.r.
138s Preparing to unpack .../313-r-cran-lambda.r_1.2.4-2build1_all.deb ...
138s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
138s Selecting previously unselected package r-cran-futile.options.
138s Preparing to unpack .../314-r-cran-futile.options_1.0.1-3build1_all.deb ...
138s Unpacking r-cran-futile.options (1.0.1-3build1) ...
138s Selecting previously unselected package r-cran-futile.logger.
138s Preparing to unpack .../315-r-cran-futile.logger_1.4.3-4build1_all.deb ...
138s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
138s Selecting previously unselected package r-cran-snow.
138s Preparing to unpack .../316-r-cran-snow_1%3a0.4.4-2_all.deb ...
138s Unpacking r-cran-snow (1:0.4.4-2) ...
138s Selecting previously unselected package r-cran-codetools.
138s Preparing to unpack .../317-r-cran-codetools_0.2-20-1_all.deb ...
138s Unpacking r-cran-codetools (0.2-20-1) ...
138s Selecting previously unselected package r-cran-bh.
138s Preparing to unpack .../318-r-cran-bh_1.84.0-1_all.deb ...
138s Unpacking r-cran-bh (1.84.0-1) ...
138s Selecting previously unselected package r-bioc-biocparallel.
138s Preparing to unpack .../319-r-bioc-biocparallel_1.36.0-1_amd64.deb ...
138s Unpacking r-bioc-biocparallel (1.36.0-1) ...
139s Selecting previously unselected package r-cran-xml.
139s Preparing to unpack .../320-r-cran-xml_3.99-0.16.1-1_amd64.deb ...
139s Unpacking r-cran-xml (3.99-0.16.1-1) ...
139s Selecting previously unselected package r-cran-hms.
139s Preparing to unpack .../321-r-cran-hms_1.1.3-1_all.deb ...
139s Unpacking r-cran-hms (1.1.3-1) ...
139s Selecting previously unselected package r-cran-prettyunits.
139s Preparing to unpack .../322-r-cran-prettyunits_1.2.0-1_all.deb ...
139s Unpacking r-cran-prettyunits (1.2.0-1) ...
139s Selecting previously unselected package r-cran-progress.
139s Preparing to unpack .../323-r-cran-progress_1.2.3-1_all.deb ...
139s Unpacking r-cran-progress (1.2.3-1) ...
139s Selecting previously unselected package r-cran-digest.
139s Preparing to unpack .../324-r-cran-digest_0.6.35-1_amd64.deb ...
139s Unpacking r-cran-digest (0.6.35-1) ...
139s Selecting previously unselected package r-cran-rappdirs.
139s Preparing to unpack .../325-r-cran-rappdirs_0.3.3-1_amd64.deb ...
139s Unpacking r-cran-rappdirs (0.3.3-1) ...
139s Selecting previously unselected package r-cran-xml2.
139s Preparing to unpack .../326-r-cran-xml2_1.3.6-1_amd64.deb ...
139s Unpacking r-cran-xml2 (1.3.6-1) ...
139s Selecting previously unselected package r-bioc-biomart.
139s Preparing to unpack .../327-r-bioc-biomart_2.58.2+dfsg-1_all.deb ...
139s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ...
139s Selecting previously unselected package r-cran-farver.
139s Preparing to unpack .../328-r-cran-farver_2.1.1-2_amd64.deb ...
139s Unpacking r-cran-farver (2.1.1-2) ...
139s Selecting previously unselected package r-cran-labeling.
139s Preparing to unpack .../329-r-cran-labeling_0.4.3-1_all.deb ...
139s Unpacking r-cran-labeling (0.4.3-1) ...
139s Selecting previously unselected package r-cran-colorspace.
139s Preparing to unpack .../330-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ...
139s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
139s Selecting previously unselected package r-cran-munsell.
139s Preparing to unpack .../331-r-cran-munsell_0.5.1-1_all.deb ...
139s Unpacking r-cran-munsell (0.5.1-1) ...
139s Selecting previously unselected package r-cran-rcolorbrewer.
139s Preparing to unpack .../332-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
139s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
139s Selecting previously unselected package r-cran-viridislite.
139s Preparing to unpack .../333-r-cran-viridislite_0.4.2-2_all.deb ...
139s Unpacking r-cran-viridislite (0.4.2-2) ...
139s Selecting previously unselected package r-cran-scales.
139s Preparing to unpack .../334-r-cran-scales_1.3.0-1_all.deb ...
139s Unpacking r-cran-scales (1.3.0-1) ...
139s Selecting previously unselected package r-cran-gtable.
139s Preparing to unpack .../335-r-cran-gtable_0.3.5+dfsg-1_all.deb ...
139s Unpacking r-cran-gtable (0.3.5+dfsg-1) ...
139s Selecting previously unselected package r-cran-isoband.
139s Preparing to unpack .../336-r-cran-isoband_0.2.7-1_amd64.deb ...
139s Unpacking r-cran-isoband (0.2.7-1) ...
139s Selecting previously unselected package r-cran-mass.
139s Preparing to unpack .../337-r-cran-mass_7.3-61-1_amd64.deb ...
139s Unpacking r-cran-mass (7.3-61-1) ...
139s Selecting previously unselected package r-cran-lattice.
139s Preparing to unpack .../338-r-cran-lattice_0.22-6-1_amd64.deb ...
139s Unpacking r-cran-lattice (0.22-6-1) ...
139s Selecting previously unselected package r-cran-nlme.
139s Preparing to unpack .../339-r-cran-nlme_3.1.165-1_amd64.deb ...
139s Unpacking r-cran-nlme (3.1.165-1) ...
139s Selecting previously unselected package r-cran-matrix.
139s Preparing to unpack .../340-r-cran-matrix_1.7-0-3_amd64.deb ...
139s Unpacking r-cran-matrix (1.7-0-3) ...
140s Selecting previously unselected package r-cran-mgcv.
140s Preparing to unpack .../341-r-cran-mgcv_1.9-1-1_amd64.deb ...
140s Unpacking r-cran-mgcv (1.9-1-1) ...
140s Selecting previously unselected package r-cran-ggplot2.
140s Preparing to unpack .../342-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ...
140s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ...
140s Selecting previously unselected package r-cran-cluster.
140s Preparing to unpack .../343-r-cran-cluster_2.1.6-1build1_amd64.deb ...
140s Unpacking r-cran-cluster (2.1.6-1build1) ...
140s Selecting previously unselected package r-cran-survival.
140s Preparing to unpack .../344-r-cran-survival_3.7-0-1_amd64.deb ...
140s Unpacking r-cran-survival (3.7-0-1) ...
140s Selecting previously unselected package r-cran-rpart.
140s Preparing to unpack .../345-r-cran-rpart_4.1.23-1build1_amd64.deb ...
140s Unpacking r-cran-rpart (4.1.23-1build1) ...
140s Selecting previously unselected package r-cran-nnet.
140s Preparing to unpack .../346-r-cran-nnet_7.3-19-2build1_amd64.deb ...
140s Unpacking r-cran-nnet (7.3-19-2build1) ...
140s Selecting previously unselected package r-cran-foreign.
140s Preparing to unpack .../347-r-cran-foreign_0.8.86-1build1_amd64.deb ...
140s Unpacking r-cran-foreign (0.8.86-1build1) ...
140s Selecting previously unselected package r-cran-gridextra.
140s Preparing to unpack .../348-r-cran-gridextra_2.3-3build1_all.deb ...
140s Unpacking r-cran-gridextra (2.3-3build1) ...
140s Selecting previously unselected package r-cran-data.table.
140s Preparing to unpack .../349-r-cran-data.table_1.15.4+dfsg-2.2_amd64.deb ...
140s Unpacking r-cran-data.table (1.15.4+dfsg-2.2) ...
140s Selecting previously unselected package r-cran-evaluate.
140s Preparing to unpack .../350-r-cran-evaluate_0.23-1_all.deb ...
140s Unpacking r-cran-evaluate (0.23-1) ...
140s Selecting previously unselected package r-cran-xfun.
140s Preparing to unpack .../351-r-cran-xfun_0.44+dfsg-1_amd64.deb ...
140s Unpacking r-cran-xfun (0.44+dfsg-1) ...
140s Selecting previously unselected package r-cran-highr.
140s Preparing to unpack .../352-r-cran-highr_0.11+dfsg-1_all.deb ...
140s Unpacking r-cran-highr (0.11+dfsg-1) ...
140s Selecting previously unselected package r-cran-yaml.
140s Preparing to unpack .../353-r-cran-yaml_2.3.8-2_amd64.deb ...
140s Unpacking r-cran-yaml (2.3.8-2) ...
140s Selecting previously unselected package libjs-mathjax.
140s Preparing to unpack .../354-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
140s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
141s Selecting previously unselected package r-cran-knitr.
141s Preparing to unpack .../355-r-cran-knitr_1.46+dfsg-1_all.deb ...
141s Unpacking r-cran-knitr (1.46+dfsg-1) ...
141s Selecting previously unselected package r-cran-backports.
141s Preparing to unpack .../356-r-cran-backports_1.4.1-1_amd64.deb ...
141s Unpacking r-cran-backports (1.4.1-1) ...
141s Selecting previously unselected package r-cran-checkmate.
141s Preparing to unpack .../357-r-cran-checkmate_2.3.1-1_amd64.deb ...
141s Unpacking r-cran-checkmate (2.3.1-1) ...
141s Selecting previously unselected package r-cran-base64enc.
141s Preparing to unpack .../358-r-cran-base64enc_0.1-3-3_amd64.deb ...
141s Unpacking r-cran-base64enc (0.1-3-3) ...
141s Selecting previously unselected package r-cran-htmltools.
141s Preparing to unpack .../359-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
141s Unpacking r-cran-htmltools (0.5.8.1-1) ...
141s Selecting previously unselected package r-cran-jquerylib.
141s Preparing to unpack .../360-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
141s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
141s Selecting previously unselected package r-cran-fs.
141s Preparing to unpack .../361-r-cran-fs_1.6.3+dfsg-1build2_amd64.deb ...
141s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ...
141s Selecting previously unselected package r-cran-sass.
141s Preparing to unpack .../362-r-cran-sass_0.4.9+dfsg-1_amd64.deb ...
141s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
141s Selecting previously unselected package r-cran-bslib.
142s Preparing to unpack .../363-r-cran-bslib_0.7.0+dfsg-1_all.deb ...
142s Unpacking r-cran-bslib (0.7.0+dfsg-1) ...
142s Selecting previously unselected package r-cran-fontawesome.
142s Preparing to unpack .../364-r-cran-fontawesome_0.5.2-1_all.deb ...
142s Unpacking r-cran-fontawesome (0.5.2-1) ...
142s Selecting previously unselected package r-cran-tinytex.
142s Preparing to unpack .../365-r-cran-tinytex_0.51-1_all.deb ...
142s Unpacking r-cran-tinytex (0.51-1) ...
142s Selecting previously unselected package libjs-modernizr.
142s Preparing to unpack .../366-libjs-modernizr_3.13.0-0.1_all.deb ...
142s Unpacking libjs-modernizr (3.13.0-0.1) ...
142s Selecting previously unselected package r-cran-littler.
142s Preparing to unpack .../367-r-cran-littler_0.3.20-1_amd64.deb ...
142s Unpacking r-cran-littler (0.3.20-1) ...
142s Selecting previously unselected package r-cran-pkgkitten.
142s Preparing to unpack .../368-r-cran-pkgkitten_0.2.3-1_all.deb ...
142s Unpacking r-cran-pkgkitten (0.2.3-1) ...
142s Selecting previously unselected package r-cran-rcpp.
142s Preparing to unpack .../369-r-cran-rcpp_1.0.12-1_amd64.deb ...
142s Unpacking r-cran-rcpp (1.0.12-1) ...
142s Selecting previously unselected package r-cran-later.
142s Preparing to unpack .../370-r-cran-later_1.3.2+dfsg-1_amd64.deb ...
142s Unpacking r-cran-later (1.3.2+dfsg-1) ...
142s Selecting previously unselected package r-cran-promises.
142s Preparing to unpack .../371-r-cran-promises_1.3.0+dfsg-1_amd64.deb ...
142s Unpacking r-cran-promises (1.3.0+dfsg-1) ...
142s Selecting previously unselected package r-cran-httpuv.
142s Preparing to unpack .../372-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
142s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
142s Selecting previously unselected package r-cran-xtable.
142s Preparing to unpack .../373-r-cran-xtable_1%3a1.8-4-2_all.deb ...
142s Unpacking r-cran-xtable (1:1.8-4-2) ...
142s Selecting previously unselected package r-cran-sourcetools.
142s Preparing to unpack .../374-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
142s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
142s Selecting previously unselected package r-cran-commonmark.
142s Preparing to unpack .../375-r-cran-commonmark_1.9.1-1_amd64.deb ...
142s Unpacking r-cran-commonmark (1.9.1-1) ...
142s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
142s Preparing to unpack .../376-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
142s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
142s Selecting previously unselected package r-cran-shiny.
142s Preparing to unpack .../377-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ...
142s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ...
142s Selecting previously unselected package r-cran-rmarkdown.
143s Preparing to unpack .../378-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
143s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
143s Selecting previously unselected package r-cran-htmlwidgets.
143s Preparing to unpack .../379-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ...
143s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ...
143s Selecting previously unselected package r-cran-rstudioapi.
143s Preparing to unpack .../380-r-cran-rstudioapi_0.16.0-1_all.deb ...
143s Unpacking r-cran-rstudioapi (0.16.0-1) ...
143s Selecting previously unselected package r-cran-htmltable.
143s Preparing to unpack .../381-r-cran-htmltable_2.4.2-1_all.deb ...
143s Unpacking r-cran-htmltable (2.4.2-1) ...
143s Selecting previously unselected package r-cran-viridis.
143s Preparing to unpack .../382-r-cran-viridis_0.6.5-1_all.deb ...
143s Unpacking r-cran-viridis (0.6.5-1) ...
143s Selecting previously unselected package r-cran-formula.
143s Preparing to unpack .../383-r-cran-formula_1.2-5-1_all.deb ...
143s Unpacking r-cran-formula (1.2-5-1) ...
143s Selecting previously unselected package r-cran-chron.
143s Preparing to unpack .../384-r-cran-chron_2.3-61-2_amd64.deb ...
143s Unpacking r-cran-chron (2.3-61-2) ...
143s Selecting previously unselected package r-cran-jpeg.
143s Preparing to unpack .../385-r-cran-jpeg_0.1-10-1_amd64.deb ...
143s Unpacking r-cran-jpeg (0.1-10-1) ...
143s Selecting previously unselected package r-cran-deldir.
143s Preparing to unpack .../386-r-cran-deldir_2.0-4-1build1_amd64.deb ...
143s Unpacking r-cran-deldir (2.0-4-1build1) ...
143s Selecting previously unselected package r-cran-rcppeigen.
143s Preparing to unpack .../387-r-cran-rcppeigen_0.3.4.0.0-1build1_amd64.deb ...
143s Unpacking r-cran-rcppeigen (0.3.4.0.0-1build1) ...
143s Selecting previously unselected package r-cran-interp.
143s Preparing to unpack .../388-r-cran-interp_1.1-6-1_amd64.deb ...
143s Unpacking r-cran-interp (1.1-6-1) ...
143s Selecting previously unselected package r-cran-latticeextra.
143s Preparing to unpack .../389-r-cran-latticeextra_0.6-30-1_all.deb ...
143s Unpacking r-cran-latticeextra (0.6-30-1) ...
143s Selecting previously unselected package r-cran-acepack.
143s Preparing to unpack .../390-r-cran-acepack_1.4.2-1_amd64.deb ...
143s Unpacking r-cran-acepack (1.4.2-1) ...
143s Selecting previously unselected package r-cran-hmisc.
143s Preparing to unpack .../391-r-cran-hmisc_5.1-3-1_amd64.deb ...
143s Unpacking r-cran-hmisc (5.1-3-1) ...
143s Selecting previously unselected package r-cran-dichromat.
143s Preparing to unpack .../392-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ...
143s Unpacking r-cran-dichromat (1:2.0-0.1-1) ...
143s Selecting previously unselected package r-cran-matrixstats.
143s Preparing to unpack .../393-r-cran-matrixstats_1.3.0-1_amd64.deb ...
143s Unpacking r-cran-matrixstats (1.3.0-1) ...
143s Selecting previously unselected package r-bioc-matrixgenerics.
144s Preparing to unpack .../394-r-bioc-matrixgenerics_1.14.0-1_all.deb ...
144s Unpacking r-bioc-matrixgenerics (1.14.0-1) ...
144s Selecting previously unselected package r-cran-abind.
144s Preparing to unpack .../395-r-cran-abind_1.4-5-2_all.deb ...
144s Unpacking r-cran-abind (1.4-5-2) ...
144s Selecting previously unselected package r-bioc-s4arrays.
144s Preparing to unpack .../396-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ...
144s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ...
144s Selecting previously unselected package r-bioc-sparsearray.
144s Preparing to unpack .../397-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ...
144s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ...
144s Selecting previously unselected package r-bioc-delayedarray.
144s Preparing to unpack .../398-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ...
144s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ...
144s Selecting previously unselected package r-bioc-summarizedexperiment.
144s Preparing to unpack .../399-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ...
144s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
144s Selecting previously unselected package r-bioc-rhtslib.
144s Preparing to unpack .../400-r-bioc-rhtslib_2.4.1+dfsg-3build2_amd64.deb ...
144s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build2) ...
144s Selecting previously unselected package r-bioc-rsamtools.
144s Preparing to unpack .../401-r-bioc-rsamtools_2.18.0+dfsg-1build2_amd64.deb ...
144s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build2) ...
144s Selecting previously unselected package r-bioc-genomicalignments.
144s Preparing to unpack .../402-r-bioc-genomicalignments_1.38.2-1_amd64.deb ...
144s Unpacking r-bioc-genomicalignments (1.38.2-1) ...
144s Selecting previously unselected package r-cran-rjson.
144s Preparing to unpack .../403-r-cran-rjson_0.2.21-1_amd64.deb ...
144s Unpacking r-cran-rjson (0.2.21-1) ...
144s Selecting previously unselected package r-cran-restfulr.
144s Preparing to unpack .../404-r-cran-restfulr_0.0.15-1_amd64.deb ...
144s Unpacking r-cran-restfulr (0.0.15-1) ...
144s Selecting previously unselected package r-bioc-rtracklayer.
144s Preparing to unpack .../405-r-bioc-rtracklayer_1.62.0-1_amd64.deb ...
144s Unpacking r-bioc-rtracklayer (1.62.0-1) ...
144s Selecting previously unselected package r-bioc-genomicfeatures.
144s Preparing to unpack .../406-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ...
144s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ...
144s Selecting previously unselected package r-bioc-bsgenome.
144s Preparing to unpack .../407-r-bioc-bsgenome_1.70.2-1_all.deb ...
144s Unpacking r-bioc-bsgenome (1.70.2-1) ...
144s Selecting previously unselected package r-bioc-variantannotation.
144s Preparing to unpack .../408-r-bioc-variantannotation_1.48.1-1build2_amd64.deb ...
144s Unpacking r-bioc-variantannotation (1.48.1-1build2) ...
145s Selecting previously unselected package r-bioc-protgenerics.
145s Preparing to unpack .../409-r-bioc-protgenerics_1.34.0-1_all.deb ...
145s Unpacking r-bioc-protgenerics (1.34.0-1) ...
145s Selecting previously unselected package r-bioc-ensembldb.
145s Preparing to unpack .../410-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ...
145s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ...
145s Selecting previously unselected package r-bioc-biovizbase.
145s Preparing to unpack .../411-r-bioc-biovizbase_1.50.0-1_amd64.deb ...
145s Unpacking r-bioc-biovizbase (1.50.0-1) ...
145s Selecting previously unselected package r-bioc-gviz.
145s Preparing to unpack .../412-r-bioc-gviz_1.46.1+dfsg-1_all.deb ...
145s Unpacking r-bioc-gviz (1.46.1+dfsg-1) ...
145s Selecting previously unselected package libnlopt0:amd64.
145s Preparing to unpack .../413-libnlopt0_2.7.1-5build2_amd64.deb ...
145s Unpacking libnlopt0:amd64 (2.7.1-5build2) ...
145s Selecting previously unselected package spades.
145s Preparing to unpack .../414-spades_3.15.5+dfsg-7_amd64.deb ...
145s Unpacking spades (3.15.5+dfsg-7) ...
145s Selecting previously unselected package trinityrnaseq-examples.
145s Preparing to unpack .../415-trinityrnaseq-examples_2.15.1+dfsg-5build1_amd64.deb ...
145s Unpacking trinityrnaseq-examples (2.15.1+dfsg-5build1) ...
147s Selecting previously unselected package genometools-common.
147s Preparing to unpack .../416-genometools-common_1.6.5+ds-2.2_all.deb ...
147s Unpacking genometools-common (1.6.5+ds-2.2) ...
147s Selecting previously unselected package seqan-apps.
147s Preparing to unpack .../417-seqan-apps_2.4.0+dfsg-16_amd64.deb ...
147s Unpacking seqan-apps (2.4.0+dfsg-16) ...
148s Selecting previously unselected package autopkgtest-satdep.
148s Preparing to unpack .../418-1-autopkgtest-satdep.deb ...
148s Unpacking autopkgtest-satdep (0) ...
148s Setting up libhtscodecs2:amd64 (1.6.0-1build1) ...
148s Setting up libgclib3t64:amd64 (0.12.7+ds-5ubuntu3) ...
148s Setting up libanyevent-perl (7.170-2build6) ...
148s Setting up libjs-json (0~20221030+~1.0.8-1) ...
148s Setting up javascript-common (11+nmu1) ...
148s Package apache2 is not configured yet. Will defer actions by package javascript-common.
148s Setting up libgraphite2-3:amd64 (1.3.14-2build1) ...
148s Setting up liblcms2-2:amd64 (2.14-2build1) ...
148s Setting up ncbi-data (6.1.20170106+dfsg2-2) ...
148s Setting up libpixman-1-0:amd64 (0.42.2-1build1) ...
148s Setting up libstring-approx-perl (3.28-2build4) ...
148s Setting up python3-argh (0.31.2-1) ...
148s Setting up libpaper1:amd64 (1.1.29build1) ...
148s 
148s Creating config file /etc/papersize with new version
148s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
150s Regenerating fonts cache... done.
150s Setting up gff2ps (0.98l-6) ...
150s Setting up gffread (0.12.7-5) ...
150s Setting up libtre5:amd64 (0.8.0-7) ...
150s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
150s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
150s Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ...
150s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
150s Setting up libdatrie1:amd64 (0.2.13-3build1) ...
150s Setting up libtest-deep-perl (1.204-1) ...
150s Setting up python3-joblib (1.3.2-2) ...
151s Setting up libjs-popper.js (1.16.1+ds-6) ...
151s Setting up python3-lz4 (4.0.2+dfsg-1build4) ...
151s Setting up libxcb-render0:amd64 (1.17.0-2) ...
151s Setting up libclone-perl:amd64 (0.46-1build3) ...
151s Setting up libalgorithm-diff-perl (1.201-1) ...
151s Setting up htslib-test (1.20+ds-1) ...
151s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
151s Setting up bwa (0.7.17-7) ...
151s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
151s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ...
151s Setting up fonts-lyx (2.4.0-1) ...
151s Setting up libhtml-tagset-perl (3.24-1) ...
151s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ...
151s Setting up unzip (6.0-28ubuntu5) ...
151s Setting up liblwp-mediatypes-perl (6.04-2) ...
151s Setting up python3-threadpoolctl (3.1.0-1) ...
151s Setting up x11-common (1:7.7+23ubuntu3) ...
151s Setting up libtry-tiny-perl (0.31-2) ...
151s Setting up node-html5shiv (3.7.3+dfsg-5) ...
151s Setting up libpq5:amd64 (16.3-1) ...
151s Setting up perl-openssl-defaults:amd64 (7build3) ...
151s Setting up libcommon-sense-perl:amd64 (3.75-3build3) ...
151s Setting up libxml-namespacesupport-perl (1.12-2) ...
151s Setting up libanyevent-http-perl (2.25-2) ...
151s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ...
151s Setting up libencode-locale-perl (1.05-3) ...
151s Setting up libnlopt0:amd64 (2.7.1-5build2) ...
151s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
151s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
151s Setting up libpaper-utils (1.1.29build1) ...
151s Setting up python3-zipp (3.19.2-2) ...
152s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ...
152s Setting up python3-freetype (2.4.0-2) ...
152s Setting up emboss-data (6.6.0+dfsg-12ubuntu2) ...
152s Setting up python3-networkx (3.2.1-4ubuntu1) ...
153s Setting up libjs-modernizr (3.13.0-0.1) ...
153s Setting up diamond-aligner (2.1.9-1) ...
153s Setting up libcairo2:amd64 (1.18.0-3build1) ...
153s Setting up bowtie2 (2.5.3-1) ...
153s Setting up augustus-doc (3.5.0+dfsg-4build5) ...
153s Setting up libjs-es5-shim (4.6.7-2) ...
153s Setting up unicode-data (15.1.0-1) ...
153s Setting up python3-simplejson (3.19.2-1build2) ...
153s Setting up libgd-perl (2.78-1build3) ...
153s Setting up libxml-sax-base-perl (1.09-3) ...
153s Setting up libio-string-perl (1.08-4) ...
153s Setting up python3-decorator (5.1.1-5) ...
153s Setting up zip (3.0-13build1) ...
153s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ...
153s Setting up libblas3:amd64 (3.12.0-3build1) ...
153s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
153s Setting up libclass-data-inheritable-perl (0.08-3) ...
153s Setting up python3-packaging (24.0-1) ...
153s Setting up gcc-13-base:amd64 (13.2.0-23ubuntu4) ...
153s Setting up libtext-diff-perl (1.45-2) ...
153s Setting up python3-brotli (1.1.0-2build2) ...
154s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
154s Setting up libquadmath0:amd64 (14.1.0-1ubuntu1) ...
154s Setting up python3-cycler (0.12.1-1) ...
154s Setting up libanyevent-cachedns-perl (0.08-3) ...
154s Setting up libimagequant0:amd64 (2.18.0-1build1) ...
154s Setting up seqan-apps (2.4.0+dfsg-16) ...
154s Setting up libjs-d3 (3.5.17-4) ...
154s Setting up python3-kiwisolver (1.4.5-1) ...
154s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ...
154s Setting up libio-html-perl (1.004-3) ...
154s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ...
154s Setting up libjsoncpp25:amd64 (1.9.5-6build1) ...
154s Setting up liblist-moreutils-xs-perl (0.430-4) ...
154s Setting up emboss-test (6.6.0+dfsg-12ubuntu2) ...
154s Setting up libjs-prototype (1.7.3-1) ...
154s Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-4) ...
154s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ...
154s Setting up libcapture-tiny-perl (0.48-2) ...
154s Setting up libtimedate-perl (2.3300-2) ...
154s Setting up libubsan1:amd64 (14.1.0-1ubuntu1) ...
154s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ...
154s Setting up libdata-stag-perl (0.14-3) ...
154s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
154s Setting up libhwasan0:amd64 (14.1.0-1ubuntu1) ...
154s Setting up pigz (2.8-1) ...
154s Setting up bamtools (2.5.2+dfsg-4) ...
154s Setting up libasan8:amd64 (14.1.0-1ubuntu1) ...
154s Setting up libapr1t64:amd64 (1.7.2-3.2) ...
154s Setting up libjson-perl (4.10000-1) ...
154s Setting up liblua5.1-0:amd64 (5.1.5-9build2) ...
154s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ...
154s Setting up libhts3t64:amd64 (1.20+ds-1) ...
154s Setting up libsub-uplevel-perl (0.2800-3) ...
154s Setting up liblua5.4-0:amd64 (5.4.6-3build2) ...
154s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ...
154s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ...
154s Setting up libthai-data (0.1.29-2build1) ...
154s Setting up python3-dateutil (2.9.0-2) ...
154s Setting up node-bootstrap-sass (3.4.3-2) ...
154s Setting up sgml-base (1.31) ...
154s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ...
154s Setting up libdevel-stacktrace-perl (2.0500-1) ...
154s Setting up apache2-data (2.4.59-2ubuntu2) ...
154s Setting up libdevel-symdump-perl (2.18-5) ...
154s Setting up libbio-perl-perl (1.7.8-1) ...
154s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
154s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ...
154s Setting up pandoc-data (3.1.3-2build2) ...
154s Setting up libtsan2:amd64 (14.1.0-1ubuntu1) ...
154s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
154s Setting up bedtools-test (2.31.1+dfsg-2) ...
154s Setting up libexporter-tiny-perl (1.006002-1) ...
154s Setting up libterm-readkey-perl (2.38-2build4) ...
154s Setting up python3-mpmath (1.3.0-1) ...
155s Setting up python3-argcomplete (3.4.0-1) ...
155s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ...
155s Setting up libwebpmux3:amd64 (1.4.0-0.1) ...
155s Setting up gff2aplot (2.0-15) ...
155s Setting up node-normalize.css (8.0.1-5) ...
155s Setting up python3-appdirs (1.4.4-4) ...
155s Setting up libssw0:amd64 (1.1-14build1) ...
155s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
155s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
155s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
155s Setting up liburi-perl (5.28-1) ...
155s Setting up sqlite3 (3.46.0-1) ...
155s Setting up libdbi-perl:amd64 (1.643-4build3) ...
155s Setting up liblsan0:amd64 (14.1.0-1ubuntu1) ...
155s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
155s Setting up libitm1:amd64 (14.1.0-1ubuntu1) ...
155s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
155s Setting up libnet-ssleay-perl:amd64 (1.94-1build4) ...
155s Setting up python3-sympy (1.12-8) ...
161s Setting up libaprutil1t64:amd64 (1.6.3-2ubuntu1) ...
161s Setting up libice6:amd64 (2:1.0.10-1build3) ...
161s Setting up libhttp-date-perl (6.06-1) ...
161s Setting up liblapack3:amd64 (3.12.0-3build1) ...
161s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
161s Setting up libxft2:amd64 (2.3.6-1build1) ...
161s Setting up libmbedx509-1t64:amd64 (2.28.8-1) ...
161s Setting up python3-pysam (0.22.1+ds-2) ...
161s Setting up python3-cairo (1.26.0-1) ...
161s Setting up libfile-listing-perl (6.16-1) ...
161s Setting up python3-importlib-metadata (7.1.0-1) ...
161s Setting up libjs-scriptaculous (1.9.0-3) ...
161s Setting up liblist-moreutils-perl (0.430-2) ...
161s Setting up libtest-warn-perl (0.37-2) ...
161s Setting up libtk8.6:amd64 (8.6.14-1build1) ...
161s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
161s Setting up libtest-differences-perl (0.71-1) ...
161s Setting up libnet-http-perl (6.23-1) ...
161s Setting up libdbd-pg-perl (3.18.0-1build3) ...
161s Setting up libexception-class-perl (1.45-1) ...
161s Setting up libaprutil1-ldap:amd64 (1.6.3-2ubuntu1) ...
161s Setting up xfonts-utils (1:7.7+6build3) ...
161s Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.3-2ubuntu1) ...
161s Setting up libxml-sax-perl (1.02+dfsg-3) ...
161s update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
161s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
162s 
162s Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
162s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
162s Setting up samtools (1.20-3) ...
162s Setting up python3-fs (2.4.16-4) ...
162s Setting up libthai0:amd64 (0.1.29-2build1) ...
162s Setting up python3-xopen (1.7.0-2) ...
162s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
162s Setting up pandoc (3.1.3+ds-3build1) ...
162s Setting up libtest-exception-perl (0.43-3) ...
162s Setting up python3-rlpycairo (0.3.0-3) ...
162s Setting up libraqm0:amd64 (0.10.1-1build1) ...
162s Setting up python3-numpy (1:1.26.4+ds-10) ...
164s Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ...
164s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
164s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
164s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
164s Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
164s Setting up libwww-robotrules-perl (6.02-1) ...
164s Setting up libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ...
164s Setting up libmbedtls14t64:amd64 (2.28.8-1) ...
164s Setting up python3-lxml:amd64 (5.2.1-1) ...
165s Setting up xml-core (0.19) ...
165s Setting up libhtml-parser-perl:amd64 (3.82-1) ...
165s Setting up spades (3.15.5+dfsg-7) ...
165s /usr/share/spades/spades_pipeline/support.py:531: SyntaxWarning: invalid escape sequence '\d'
165s   return [atoi(c) for c in re.split("(\d+)", text)]
165s Setting up python3-contourpy (1.0.7-3) ...
165s Setting up libdbd-sqlite3-perl:amd64 (1.74-1build3) ...
165s Setting up libsm6:amd64 (2:1.2.3-1build3) ...
165s Setting up libio-socket-ssl-perl (2.085-1) ...
165s Setting up libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ...
165s Setting up python3-dnaio (1.2.0-2build1) ...
165s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
165s Setting up libhttp-message-perl (6.45-1ubuntu1) ...
165s Setting up apache2-utils (2.4.59-2ubuntu2) ...
165s Setting up python3-pyfaidx (0.8.1.1-2) ...
165s Setting up libhttp-negotiate-perl (6.01-2) ...
165s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
165s Setting up python3-pybedtools (0.10.0-1) ...
166s Setting up libboost1.83-dev:amd64 (1.83.0-3ubuntu1) ...
166s Setting up libstatistics-descriptive-perl (3.0801-1) ...
166s Setting up python3-scipy (1.12.0-2) ...
169s Setting up libhttp-cookies-perl (6.11-1) ...
169s Setting up libtest-most-perl (0.38-1) ...
169s Setting up libhtml-tree-perl (5.07-3) ...
169s Setting up blt (2.5.3+dfsg-7build1) ...
169s Setting up python3-pomegranate (0.14.8-6) ...
169s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ...
169s Setting up libpango-1.0-0:amd64 (1.54.0+ds-1) ...
169s Setting up libcgi-pm-perl (4.65-1) ...
169s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-1) ...
169s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ...
169s Setting up fonts-urw-base35 (20200910-8) ...
169s Setting up apache2-bin (2.4.59-2ubuntu2) ...
169s Setting up ncbi-blast+ (2.12.0+ds-4build2) ...
169s Setting up python3-pil:amd64 (10.3.0-2) ...
170s Setting up python3-pandas (2.1.4+dfsg-8) ...
174s Setting up python3-cutadapt (4.7-2) ...
175s Setting up python3-pil.imagetk:amd64 (10.3.0-2) ...
175s Setting up libcgi-session-perl (4.48-4) ...
175s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
175s Setting up python3-sklearn (1.4.2+dfsg-1) ...
177s Setting up libxml-simple-perl (2.25-2) ...
177s Setting up python3-reportlab (4.2.0-2) ...
178s Setting up libhttp-daemon-perl (6.16-1) ...
178s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ...
178s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ...
178s Setting up proteinortho (6.3.1+dfsg-1) ...
178s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ...
178s Setting up bioperl (1.7.8-1) ...
178s Setting up cutadapt (4.7-2) ...
178s Setting up apache2 (2.4.59-2ubuntu2) ...
178s Enabling module mpm_event.
178s Enabling module authz_core.
178s Enabling module authz_host.
178s Enabling module authn_core.
178s Enabling module auth_basic.
178s Enabling module access_compat.
178s Enabling module authn_file.
178s Enabling module authz_user.
178s Enabling module alias.
178s Enabling module dir.
178s Enabling module autoindex.
178s Enabling module env.
178s Enabling module mime.
178s Enabling module negotiation.
178s Enabling module setenvif.
178s Enabling module filter.
178s Enabling module deflate.
178s Enabling module status.
178s Enabling module reqtimeout.
178s Enabling conf charset.
178s Enabling conf localized-error-pages.
178s Enabling conf other-vhosts-access-log.
178s Enabling conf security.
178s Enabling conf serve-cgi-bin.
178s Enabling site 000-default.
178s info: Executing deferred 'a2enconf javascript-common' for package javascript-common
178s Enabling conf javascript-common.
179s Created symlink /etc/systemd/system/multi-user.target.wants/apache2.service → /usr/lib/systemd/system/apache2.service.

180s Created symlink /etc/systemd/system/multi-user.target.wants/apache-htcacheclean.service → /usr/lib/systemd/system/apache-htcacheclean.service.

181s Setting up libbio-coordinate-perl (1.7.1-4) ...
181s Setting up r-base-core (4.4.1-1) ...
181s 
181s Creating config file /etc/R/Renviron with new version
181s Setting up r-cran-crayon (1.5.2-1) ...
181s Setting up r-cran-labeling (0.4.3-1) ...
181s Setting up r-cran-sourcetools (0.1.7-1-1) ...
181s Setting up r-cran-futile.options (1.0.1-3build1) ...
181s Setting up r-cran-lattice (0.22-6-1) ...
181s Setting up r-cran-nlme (3.1.165-1) ...
181s Setting up r-cran-farver (2.1.1-2) ...
181s Setting up r-cran-formatr (1.14-2) ...
181s Setting up r-cran-formula (1.2-5-1) ...
181s Setting up r-cran-xml (3.99-0.16.1-1) ...
181s Setting up trinityrnaseq-examples (2.15.1+dfsg-5build1) ...
181s Setting up r-cran-viridislite (0.4.2-2) ...
181s Setting up r-cran-cluster (2.1.6-1build1) ...
181s Setting up genometools-common (1.6.5+ds-2.2) ...
181s Setting up r-cran-nnet (7.3-19-2build1) ...
181s Setting up r-cran-lazyeval (0.2.2-1build1) ...
181s Setting up r-cran-commonmark (1.9.1-1) ...
181s Setting up r-cran-r6 (2.5.1-1) ...
181s Setting up r-cran-pkgkitten (0.2.3-1) ...
181s Setting up r-cran-jpeg (0.1-10-1) ...
181s Setting up r-cran-chron (2.3-61-2) ...
181s Setting up r-cran-magrittr (2.0.3-1) ...
181s Setting up r-cran-rappdirs (0.3.3-1) ...
181s Setting up r-cran-filelock (1.0.3-1) ...
181s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
181s Setting up r-cran-littler (0.3.20-1) ...
181s Setting up r-cran-bh (1.84.0-1) ...
181s Setting up r-cran-fs (1.6.3+dfsg-1build2) ...
181s Setting up r-cran-rcpp (1.0.12-1) ...
181s Setting up r-cran-curl (5.2.1+dfsg-1) ...
181s Setting up r-cran-codetools (0.2-20-1) ...
181s Setting up r-bioc-biocgenerics (0.48.1-2) ...
181s Setting up r-cran-rlang (1.1.4-1) ...
181s Setting up r-cran-matrixstats (1.3.0-1) ...
181s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
181s Setting up r-cran-xfun (0.44+dfsg-1) ...
181s Setting up r-cran-sys (3.4.2-1) ...
181s Setting up r-cran-plogr (0.2.0-3build1) ...
181s Setting up r-cran-withr (2.5.0-1) ...
181s Setting up r-cran-backports (1.4.1-1) ...
181s Setting up r-cran-mime (0.12-2) ...
181s Setting up r-cran-generics (0.1.3-1) ...
181s Setting up r-cran-base64enc (0.1-3-3) ...
181s Setting up r-cran-abind (1.4-5-2) ...
181s Setting up r-cran-digest (0.6.35-1) ...
181s Setting up r-cran-yaml (2.3.8-2) ...
181s Setting up r-cran-lambda.r (1.2.4-2build1) ...
181s Setting up r-bioc-protgenerics (1.34.0-1) ...
181s Setting up r-cran-evaluate (0.23-1) ...
181s Setting up r-cran-dbi (1.2.3-1) ...
181s Setting up r-cran-highr (0.11+dfsg-1) ...
181s Setting up r-cran-prettyunits (1.2.0-1) ...
181s Setting up r-cran-fansi (1.0.5-1) ...
181s Setting up r-cran-mass (7.3-61-1) ...
181s Setting up r-cran-checkmate (2.3.1-1) ...
181s Setting up r-cran-acepack (1.4.2-1) ...
181s Setting up r-cran-snow (1:0.4.4-2) ...
181s Setting up r-cran-data.table (1.15.4+dfsg-2.2) ...
181s Setting up r-cran-glue (1.7.0-1) ...
181s Setting up r-cran-foreign (0.8.86-1build1) ...
181s Setting up r-cran-bit (4.0.5-1) ...
181s Setting up r-cran-xtable (1:1.8-4-2) ...
181s Setting up r-cran-cli (3.6.2-1) ...
181s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
181s Setting up r-cran-bitops (1.0-7-1) ...
181s Setting up r-cran-bit64 (4.0.5-1) ...
181s Setting up r-cran-dichromat (1:2.0-0.1-1) ...
181s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
181s Setting up r-cran-deldir (2.0-4-1build1) ...
181s Setting up r-cran-askpass (1.2.0-1) ...
181s Setting up r-cran-fastmap (1.1.1-1) ...
181s Setting up r-cran-png (0.1-8-1build2) ...
181s Setting up r-bioc-biobase (2.62.0-1) ...
181s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
181s Setting up r-cran-rstudioapi (0.16.0-1) ...
181s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
181s Setting up r-cran-utf8 (1.2.4-1) ...
181s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
181s Setting up r-cran-stringi (1.8.3-1) ...
181s Setting up r-cran-cpp11 (0.4.7-1) ...
181s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
181s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
181s Setting up r-cran-isoband (0.2.7-1) ...
181s Setting up r-cran-futile.logger (1.4.3-4build1) ...
181s Setting up r-cran-gtable (0.3.5+dfsg-1) ...
181s Setting up r-cran-later (1.3.2+dfsg-1) ...
181s Setting up r-cran-matrix (1.7-0-3) ...
181s Setting up r-cran-htmltools (0.5.8.1-1) ...
181s Setting up r-cran-tinytex (0.51-1) ...
181s Setting up r-cran-knitr (1.46+dfsg-1) ...
181s Setting up r-cran-mgcv (1.9-1-1) ...
181s Setting up r-bioc-dnacopy (1.76.0-1) ...
181s Setting up r-cran-cachem (1.0.8-1) ...
181s Setting up r-cran-sass (0.4.9+dfsg-1) ...
181s Setting up r-bioc-iranges (2.36.0-1) ...
181s Setting up r-cran-rjson (0.2.21-1) ...
181s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build2) ...
181s Setting up r-cran-restfulr (0.0.15-1) ...
181s Setting up r-cran-vctrs (0.6.5-1) ...
181s Setting up r-cran-rcppeigen (0.3.4.0.0-1build1) ...
181s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
181s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ...
181s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
181s Setting up r-cran-stringr (1.5.1-1) ...
181s Setting up r-bioc-biocparallel (1.36.0-1) ...
181s Setting up r-bioc-rhtslib (2.4.1+dfsg-3build2) ...
181s Setting up r-cran-xml2 (1.3.6-1) ...
181s Setting up r-cran-munsell (0.5.1-1) ...
181s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
181s Setting up r-cran-fontawesome (0.5.2-1) ...
181s Setting up r-cran-survival (3.7-0-1) ...
181s Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
181s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
181s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
181s Setting up r-cran-interp (1.1-6-1) ...
181s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
181s Setting up r-cran-httr (1.4.7+dfsg-1) ...
181s Setting up r-cran-gridextra (2.3-3build1) ...
181s Setting up r-cran-hms (1.1.3-1) ...
181s Setting up r-cran-scales (1.3.0-1) ...
181s Setting up r-cran-memoise (2.0.1-1) ...
181s Setting up r-cran-promises (1.3.0+dfsg-1) ...
181s Setting up r-cran-purrr (1.0.2-1) ...
181s Setting up r-cran-blob (1.2.4-1) ...
181s Setting up r-bioc-xvector (0.42.0-1) ...
181s Setting up r-cran-dplyr (1.1.4-1) ...
181s Setting up r-cran-rsqlite (2.3.7-1) ...
181s Setting up r-cran-progress (1.2.3-1) ...
181s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
181s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
181s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
181s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
181s Setting up r-cran-rpart (4.1.23-1build1) ...
181s Setting up r-bioc-biostrings (2.70.3+dfsg-1) ...
181s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ...
181s Setting up r-cran-latticeextra (0.6-30-1) ...
181s Setting up r-cran-viridis (0.6.5-1) ...
181s Setting up r-cran-bslib (0.7.0+dfsg-1) ...
181s Setting up r-cran-tidyr (1.3.1-1) ...
181s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build2) ...
181s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
181s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
181s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
181s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
181s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
181s Setting up r-bioc-annotationdbi (1.64.1-1) ...
181s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ...
181s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
181s Setting up r-bioc-biomart (2.58.2+dfsg-1) ...
181s Setting up r-bioc-genomicalignments (1.38.2-1) ...
181s Setting up r-bioc-rtracklayer (1.62.0-1) ...
181s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ...
181s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
181s Setting up r-bioc-bsgenome (1.70.2-1) ...
181s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ...
181s Setting up r-bioc-variantannotation (1.48.1-1build2) ...
181s Setting up r-cran-htmltable (2.4.2-1) ...
181s Setting up r-cran-hmisc (5.1-3-1) ...
181s Setting up r-bioc-biovizbase (1.50.0-1) ...
181s Setting up r-bioc-gviz (1.46.1+dfsg-1) ...
181s Setting up liblwp-protocol-https-perl (6.14-1) ...
181s Setting up libwww-perl (6.77-1) ...
181s Setting up python3-fonttools (4.46.0-1build2) ...
182s Setting up libapache2-mod-perl2 (2.0.13-1build5) ...
182s apache2_invoke: Enable module perl
182s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
182s Setting up libbio-db-biofetch-perl (1.7.3-4) ...
182s Setting up python3-matplotlib (3.6.3-2ubuntu1) ...
184s Setting up libvm-ec2-perl (1.28-4) ...
184s Setting up libapache-dbi-perl (1.12-3) ...
184s Setting up libbio-db-gff-perl (1.7.4-1) ...
184s Setting up libbio-db-seqfeature-perl (1.7.4-2) ...
184s Setting up libbio-graphics-perl (2.40-6) ...
184s Setting up gbrowse (2.56+dfsg-12build3) ...
185s apache2_invoke: Enable configuration gbrowse
185s Processing triggers for man-db (2.12.1-2) ...
186s Processing triggers for install-info (7.1-3build2) ...
187s Processing triggers for libc-bin (2.39-0ubuntu9) ...
187s Processing triggers for ufw (0.36.2-6) ...
187s Processing triggers for sgml-base (1.31) ...
187s Setting up w3c-sgml-lib (1.3-3) ...
213s Setting up python3-biopython (1.83+dfsg1-3) ...
214s Setting up python3-gffutils (0.13-1) ...
215s Setting up cnvkit (0.9.10-2) ...
215s Setting up optimir (1.2-1) ...
215s /usr/lib/python3/dist-packages/optimir/libs/get_counts.py:453: SyntaxWarning: "is" with 'str' literal. Did you mean "=="?
215s   if prefix is '':
215s Setting up autopkgtest-satdep (0) ...
227s (Reading database ... 140280 files and directories currently installed.)
227s Removing autopkgtest-satdep (0) ...
227s autopkgtest [01:06:46]: test run-tests: [-----------------------
227s /usr/share/doc/augustus/tutorial/data/hints.rnaseq.intron.gff: is okay.
227s /usr/share/doc/augustus/tutorial/results/abinitio-browser.gff: is okay.
227s /usr/share/doc/augustus/tutorial/results/augustus-ppx.gff: is okay.
227s /usr/share/doc/augustus/tutorial/results/hints.est.gff: is okay.
227s /usr/share/doc/augustus/tutorial/results/hints.gff: is okay.
227s /usr/share/doc/augustus/tutorial/results/hints.rnaseq.ep.gff: is okay.
227s /usr/share/doc/augustus/tutorial/results/output-abinitio.gff: is okay.
227s /usr/share/doc/augustus/tutorial/results/output-browser.gff: is okay.
227s /usr/share/doc/augustus/tutorial/results/output.gff: is okay.
227s /usr/share/doc/augustus/tutorial/results/scipio.gff: is okay.
227s /usr/share/bedtools/test/fisher/tumor.gff: is okay.
227s /usr/share/bedtools/test/intersect/b.issue311.gff: is okay.
227s /usr/share/bedtools/test/intersect/gdc.gff: is okay.
227s /usr/share/bedtools/test/map/test.gff: is okay.
227s /usr/share/bedtools/test/merge/a.gff: is okay.
227s /usr/share/EMBOSS/data/Efeatures.gff2: is okay.
227s /usr/share/EMBOSS/data/Efeatures.gff3: is okay.
227s /usr/share/EMBOSS/data/Etags.gff2: is okay.
227s /usr/share/EMBOSS/data/Etags.gff3: is okay.
227s /usr/share/EMBOSS/test/data/bioperl.gff3: is okay.
227s /usr/share/EMBOSS/test/data/eden1.gff3: is okay.
227s /usr/share/EMBOSS/test/data/featexample1.gff3: is okay.
227s /usr/share/EMBOSS/test/data/gmod-align.gff3: Warning: unexpected tab character in last column, line truncated:
227s ctg123	est	EST_match	1050	1500	.	+	.	ID=Match1;Name=agt830.5;Tis okay.
227s /usr/share/EMBOSS/test/data/gmod-discontinuous.gff3: arget=agt830.5	1	451
227s Warning: unexpected tab character in last column, line truncated:
227s ctg123	est	EST_match	3000	3202	.	+	.	ID=Match1;Name=agt830.5;Target=agt830.5	452	654
227s Warning: unexpected tab character in last column, line truncated:
227s ctg123	est	EST_match	5410	5500	.	-	.	ID=Match2;Name=agt830.3;Target=agt830.3	505	595
227s Warning: unexpected tab character in last column, line truncated:
227s ctg123	est	EST_match	7000	7503	.	-	.	ID=Match2;Name=agt830.3;Target=agt830.3	1	504
227s Warning: unexpected tab character in last column, line truncated:
227s ctg123	est	EST_match	1050	1500	.	+	.	ID=Match3;Name=agt221.5;Target=agt221.5	1	451
227s Warning: unexpected tab character in last column, line truncated:
227s ctg123	est	EST_match	5000	5500	.	+	.	ID=Match3;Name=agt221.5;Target=agt221.5	452	952
227s Warning: unexpected tab character in last column, line truncated:
227s ctg123	est	EST_match	7000	7300	.	+	.	ID=Match3;Name=agt221.5;Target=agt221.5	953	1253
227s is okay.
227s /usr/share/EMBOSS/test/data/gmod-eden1.gff3: is okay.
227s /usr/share/EMBOSS/test/data/gmod-sonic1.gff3: Warning: unexpected tab character in last column, line truncated:
227s ctg123	example	gene	1050	9000	.	+	.	ID=EDEN;Name=EDEN;Note=protein	kinase
227s is okay.
227s /usr/share/EMBOSS/test/data/gmod-sonic2.gff3: is okay.
227s /usr/share/EMBOSS/test/data/gmod-sonic3.gff3: is okay.
227s /usr/share/EMBOSS/test/data/hba.gff: is okay.
227s /usr/share/EMBOSS/test/data/noid.gff: is okay.
227s /usr/share/EMBOSS/test/data/paamir.gff: is okay.
227s /usr/share/EMBOSS/test/data/paamir.gff3: is okay.
227s /usr/share/EMBOSS/test/data/seqexample.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_expression.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_extra.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_repeats.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_domains.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes_simple.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_remarks.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.gff3: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff: is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff: Warning: unexpected tab character in last column, line truncated:
227s ctgA	est	HSP	7000	7300	.	+	.	EST agt221.5	
227s Warning: unexpected tab character in last column, line truncated:
227s ctgA	est	HSP	7000	7200	.	+	.	EST agt767.5	
227s is okay.
227s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff: is okay.
227s /usr/share/genometools/gtdata/doc/csa_example_consensus_spliced_alignments.gff3: is okay.
227s /usr/share/genometools/gtdata/doc/csa_example_spliced_alignments.gff3: is okay.
227s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sgp1.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.tblastx.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/mhcregion/hs.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/mhcregion/mm.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs-mm.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.mm.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs-mm.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.mm.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs_utr.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm_utr.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/wublast/taf6.hs.gene.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/wublast/taf6.mm.gene.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.aplot.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.full.gff: Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	5219	5832	1405	+	.	Target "NM_005641";	Start 11597;	End 12218;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	1719	2099	1122	+	.	Target "NM_005641";	Start 7067;	End 7448;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	664	1262	944	+	.	Target "NM_005641";	Start 5482;	End 6065;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	4851	5137	848	+	.	Target "NM_005641";	Start 11198;	End 11485;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2375	2778	834	+	.	Target "NM_005641";	Start 8002;	End 8402;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3109	3832	831	+	.	Target "NM_005641";	Start 8902;	End 9636;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	4535	4738	741	+	.	Target "NM_005641";	Start 10806;	End 11009;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	1239	1462	724	+	.	Target "NM_005641";	Start 6393;	End 6618;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	1	292	691	+	.	Target "NM_005641";	Start 5138;	End 5426;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2116	2390	654	+	.	Target "NM_005641";	Start 7444;	End 7714;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	550	675	460	+	.	Target "NM_005641";	Start 5378;	End 5504;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	5558	5878	357	+	.	Target "NM_005641";	Start 11954;	End 12278;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3086	3175	253	+	.	Target "NM_005641";	Start 6827;	End 6924;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3079	3192	252	+	.	Target "NM_005641";	Start 1490;	End 1610;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3058	3177	212	+	.	Target "NM_005641";	Start 10064;	End 10180;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3083	3204	205	+	.	Target "NM_005641";	Start 3564;	End 3694;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3056	3172	204	+	.	Target "NM_005641";	Start 3724;	End 3837;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3061	3172	200	+	.	Target "NM_005641";	Start 3416;	End 3528;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3114	3172	195	+	.	Target "NM_005641";	Start 2801;	End 2860;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3028	3190	179	+	.	Target "NM_005641";	Start 10323;	End 10493;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3104	3175	178	+	.	Target "NM_005641";	Start 8752;	End 8825;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3114	3172	177	+	.	Target "NM_005641";	Start 2194;	End 2253;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3111	3177	177	+	.	Target "NM_005641";	Start 1390;	End 1461;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2757	2926	172	+	.	Target "NM_005641";	Start 6007;	End 6180;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2769	2855	170	+	.	Target "NM_005641";	Start 9981;	End 10063;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3118	3192	169	+	.	Target "NM_005641";	Start 8633;	End 8708;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3109	3172	165	+	.	Target "NM_005641";	Start 10246;	End 10311;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2710	3013	164	+	.	Target "NM_005641";	Start 10244;	End 10543;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3111	3190	164	+	.	Target "NM_005641";	Start 913;	End 994;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2728	3006	156	+	.	Target "NM_005641";	Start 929;	End 1212;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2788	2855	151	+	.	Target "NM_005641";	Start 6612;	End 6673;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3118	3167	150	+	.	Target "NM_005641";	Start 6314;	End 6364;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	357	463	150	+	.	Target "NM_005641";	Start 1748;	End 1853;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3082	3156	149	+	.	Target "NM_005641";	Start 10512;	End 10581;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2710	2804	149	+	.	Target "NM_005641";	Start 4552;	End 4647;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2791	2855	142	+	.	Target "NM_005641";	Start 1283;	End 1342;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2797	2842	140	+	.	Target "NM_005641";	Start 3670;	End 3715;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2727	2911	139	+	.	Target "NM_005641";	Start 605;	End 791;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2804	2863	137	+	.	Target "NM_005641";	Start 8525;	End 8585;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	399	453	132	+	.	Target "NM_005641";	Start 9592;	End 9647;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2811	2950	128	+	.	Target "NM_005641";	Start 8839;	End 8979;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2783	3006	127	+	.	Target "NM_005641";	Start 1290;	End 1523;	Strand +;	Frame .;	
227s is okay.
227s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.gff: Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	5219	5832	1405	+	.	Target "NM_005641" 11597 12218 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	1719	2099	1122	+	.	Target "NM_005641" 7067 7448 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	664	1262	944	+	.	Target "NM_005641" 5482 6065 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	4851	5137	848	+	.	Target "NM_005641" 11198 11485 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2375	2778	834	+	.	Target "NM_005641" 8002 8402 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3109	3832	831	+	.	Target "NM_005641" 8902 9636 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	4535	4738	741	+	.	Target "NM_005641" 10806 11009 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	1239	1462	724	+	.	Target "NM_005641" 6393 6618 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	1	292	691	+	.	Target "NM_005641" 5138 5426 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2116	2390	654	+	.	Target "NM_005641" 7444 7714 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	550	675	460	+	.	Target "NM_005641" 5378 5504 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	5558	5878	357	+	.	Target "NM_005641" 11954 12278 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3086	3175	253	+	.	Target "NM_005641" 6827 6924 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3079	3192	252	+	.	Target "NM_005641" 1490 1610 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3058	3177	212	+	.	Target "NM_005641" 10064 10180 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3083	3204	205	+	.	Target "NM_005641" 3564 3694 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3056	3172	204	+	.	Target "NM_005641" 3724 3837 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3061	3172	200	+	.	Target "NM_005641" 3416 3528 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3114	3172	195	+	.	Target "NM_005641" 2801 2860 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3028	3190	179	+	.	Target "NM_005641" 10323 10493 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3104	3175	178	+	.	Target "NM_005641" 8752 8825 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3114	3172	177	+	.	Target "NM_005641" 2194 2253 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3111	3177	177	+	.	Target "NM_005641" 1390 1461 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2757	2926	172	+	.	Target "NM_005641" 6007 6180 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2769	2855	170	+	.	Target "NM_005641" 9981 10063 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3118	3192	169	+	.	Target "NM_005641" 8633 8708 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3109	3172	165	+	.	Target "NM_005641" 10246 10311 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2710	3013	164	+	.	Target "NM_005641" 10244 10543 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3111	3190	164	+	.	Target "NM_005641" 913 994 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2728	3006	156	+	.	Target "NM_005641" 929 1212 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2788	2855	151	+	.	Target "NM_005641" 6612 6673 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3118	3167	150	+	.	Target "NM_005641" 6314 6364 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	357	463	150	+	.	Target "NM_005641" 1748 1853 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	3082	3156	149	+	.	Target "NM_005641" 10512 10581 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2710	2804	149	+	.	Target "NM_005641" 4552 4647 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2791	2855	142	+	.	Target "NM_005641" 1283 1342 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2797	2842	140	+	.	Target "NM_005641" 3670 3715 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2727	2911	139	+	.	Target "NM_005641" 605 791 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2804	2863	137	+	.	Target "NM_005641" 8525 8585 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	399	453	132	+	.	Target "NM_005641" 9592 9647 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2811	2950	128	+	.	Target "NM_005641" 8839 8979 + .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	BLASTN	hsp	2783	3006	127	+	.	Target "NM_005641" 1290 1523 + .;	
227s is okay.
227s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff: is okay.
227s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.gff: Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4867	5778	839	+	.	Target "NM_005641";	Start 11212;	End 12162;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4874	5785	645	+	.	Target "NM_005641";	Start 11219;	End 12151;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2379	2621	344	+	.	Target "NM_005641";	Start 8006;	End 8248;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	673	1017	321	+	.	Target "NM_005641";	Start 5471;	End 5833;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4519	4773	315	+	.	Target "NM_005641";	Start 10778;	End 11065;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1719	1913	285	+	.	Target "NM_005641";	Start 7067;	End 7261;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2	172	262	+	.	Target "NM_005641";	Start 5139;	End 5309;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1212	1409	252	+	.	Target "NM_005641";	Start 6373;	End 6564;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	762	1061	252	+	.	Target "NM_005641";	Start 5572;	End 5880;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3432	3638	247	+	.	Target "NM_005641";	Start 9233;	End 9439;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2378	2605	227	+	.	Target "NM_005641";	Start 8005;	End 8232;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3140	3613	194	+	.	Target "NM_005641";	Start 8935;	End 9414;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2116	2373	190	+	.	Target "NM_005641";	Start 7444;	End 7698;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	6	173	188	+	.	Target "NM_005641";	Start 5143;	End 5310;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	505	738	187	+	.	Target "NM_005641";	Start 5322;	End 5579;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	7	174	184	+	.	Target "NM_005641";	Start 5144;	End 5311;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1228	1458	178	+	.	Target "NM_005641";	Start 6368;	End 6613;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1906	2100	159	+	.	Target "NM_005641";	Start 7265;	End 7450;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1980	2348	159	+	.	Target "NM_005641";	Start 7329;	End 7676;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1941	2126	136	+	.	Target "NM_005641";	Start 7288;	End 7482;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1104	1226	135	+	.	Target "NM_005641";	Start 5927;	End 6040;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	5612	5878	94	+	.	Target "NM_005641";	Start 12030;	End 12278;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2791	2877	73	+	.	Target "NM_005641";	Start 676;	End 744;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3083	3175	71	+	.	Target "NM_005641";	Start 10044;	End 10178;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2773	2880	71	+	.	Target "NM_005641";	Start 1278;	End 1358;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	683	787	65	+	.	Target "NM_005641";	Start 3408;	End 3518;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3503	3724	63	+	.	Target "NM_005641";	Start 11672;	End 11920;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	405	464	61	+	.	Target "NM_005641";	Start 1930;	End 1989;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2790	3026	61	+	.	Target "NM_005641";	Start 6614;	End 6844;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4895	5158	60	+	.	Target "NM_005641";	Start 11942;	End 12223;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4041	4097	60	+	.	Target "NM_005641";	Start 6339;	End 6395;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2785	2850	59	+	.	Target "NM_005641";	Start 10005;	End 10058;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	686	784	59	+	.	Target "NM_005641";	Start 6667;	End 6771;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3121	3186	59	+	.	Target "NM_005641";	Start 6873;	End 6935;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3028	3171	59	+	.	Target "NM_005641";	Start 3684;	End 3836;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3123	3182	59	+	.	Target "NM_005641";	Start 2946;	End 3005;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	304	519	55	+	.	Target "NM_005641";	Start 9309;	End 9518;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4041	4100	54	+	.	Target "NM_005641";	Start 10281;	End 10340;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4047	4109	54	+	.	Target "NM_005641";	Start 8664;	End 8726;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3031	3174	53	+	.	Target "NM_005641";	Start 10322;	End 10477;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	686	772	53	+	.	Target "NM_005641";	Start 3720;	End 3812;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2770	2850	53	+	.	Target "NM_005641";	Start 6603;	End 6668;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3136	3177	53	+	.	Target "NM_005641";	Start 1110;	End 1151;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4579	4647	52	+	.	Target "NM_005641";	Start 8188;	End 8256;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3028	3141	52	+	.	Target "NM_005641";	Start 685;	End 810;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2804	2836	51	+	.	Target "NM_005641";	Start 8525;	End 8557;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3095	3175	51	+	.	Target "NM_005641";	Start 10407;	End 10478;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4002	4097	51	+	.	Target "NM_005641";	Start 4547;	End 4645;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4166	4249	50	+	.	Target "NM_005641";	Start 7241;	End 7333;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	5536	5694	50	+	.	Target "NM_005641";	Start 11141;	End 11311;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	555	608	50	+	.	Target "NM_005641";	Start 7342;	End 7392;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	405	464	50	+	.	Target "NM_005641";	Start 7849;	End 7908;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1447	1500	49	+	.	Target "NM_005641";	Start 6928;	End 6978;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2916	3011	49	+	.	Target "NM_005641";	Start 10443;	End 10541;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	931	1125	49	+	.	Target "NM_005641";	Start 5746;	End 5943;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1501	1587	49	+	.	Target "NM_005641";	Start 7763;	End 7849;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3028	3168	49	+	.	Target "NM_005641";	Start 1465;	End 1587;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3121	3168	48	+	.	Target "NM_005641";	Start 6321;	End 6365;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2792	2842	48	+	.	Target "NM_005641";	Start 3674;	End 3715;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3083	3139	48	+	.	Target "NM_005641";	Start 4520;	End 4585;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4029	4091	48	+	.	Target "NM_005641";	Start 2821;	End 2880;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2913	2969	47	+	.	Target "NM_005641";	Start 8482;	End 8538;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3118	3150	47	+	.	Target "NM_005641";	Start 10544;	End 10576;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4047	4097	47	+	.	Target "NM_005641";	Start 8493;	End 8543;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	689	784	47	+	.	Target "NM_005641";	Start 4665;	End 4766;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3086	3115	47	+	.	Target "NM_005641";	Start 6827;	End 6856;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3083	3121	47	+	.	Target "NM_005641";	Start 6654;	End 6692;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3056	3211	47	+	.	Target "NM_005641";	Start 2989;	End 3156;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3136	3168	46	+	.	Target "NM_005641";	Start 10275;	End 10307;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	408	476	46	+	.	Target "NM_005641";	Start 1798;	End 1866;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4888	4950	46	+	.	Target "NM_005641";	Start 10422;	End 10484;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	546	590	46	+	.	Target "NM_005641";	Start 3051;	End 3086;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2806	2844	46	+	.	Target "NM_005641";	Start 6047;	End 6094;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	5758	5823	46	+	.	Target "NM_005641";	Start 10842;	End 10907;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2794	2871	46	+	.	Target "NM_005641";	Start 3670;	End 3747;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3621	3713	46	+	.	Target "NM_005641";	Start 4612;	End 4704;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1143	1187	45	+	.	Target "NM_005641";	Start 8580;	End 8624;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3029	3121	45	+	.	Target "NM_005641";	Start 1299;	End 1361;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4047	4091	45	+	.	Target "NM_005641";	Start 3813;	End 3857;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4233	4304	45	+	.	Target "NM_005641";	Start 2166;	End 2240;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4353	4457	45	+	.	Target "NM_005641";	Start 2071;	End 2172;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3817	3882	44	+	.	Target "NM_005641";	Start 9908;	End 9973;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3012	3152	44	+	.	Target "NM_005641";	Start 8506;	End 8667;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3144	3176	44	+	.	Target "NM_005641";	Start 10447;	End 10479;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	5430	5534	44	+	.	Target "NM_005641";	Start 9313;	End 9423;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4655	4735	44	+	.	Target "NM_005641";	Start 6495;	End 6575;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3793	3849	44	+	.	Target "NM_005641";	Start 5563;	End 5619;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3118	3165	44	+	.	Target "NM_005641";	Start 3610;	End 3654;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3083	3166	44	+	.	Target "NM_005641";	Start 1017;	End 1100;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	5625	5684	44	+	.	Target "NM_005641";	Start 5493;	End 5552;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3138	3176	43	+	.	Target "NM_005641";	Start 8788;	End 8826;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3654	3728	43	+	.	Target "NM_005641";	Start 9429;	End 9503;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	405	476	43	+	.	Target "NM_005641";	Start 4206;	End 4277;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	856	978	43	+	.	Target "NM_005641";	Start 6448;	End 6570;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1600	1629	43	+	.	Target "NM_005641";	Start 4298;	End 4327;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	5434	5481	43	+	.	Target "NM_005641";	Start 10718;	End 10765;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3075	3125	43	+	.	Target "NM_005641";	Start 11897;	End 11947;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2978	3019	43	+	.	Target "NM_005641";	Start 3874;	End 3915;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4041	4091	43	+	.	Target "NM_005641";	Start 1561;	End 1608;	Strand +;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4866	5786	772	-	.	Target "NM_005641";	Start 11211;	End 12152;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2258	2611	309	-	.	Target "NM_005641";	Start 7852;	End 8238;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	762	1058	293	-	.	Target "NM_005641";	Start 5572;	End 5877;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4518	4721	290	-	.	Target "NM_005641";	Start 10777;	End 10992;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1718	1912	261	-	.	Target "NM_005641";	Start 7066;	End 7260;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3392	3643	250	-	.	Target "NM_005641";	Start 9172;	End 9441;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4	174	236	-	.	Target "NM_005641";	Start 5141;	End 5311;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1259	1408	235	-	.	Target "NM_005641";	Start 6414;	End 6563;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2116	2349	209	-	.	Target "NM_005641";	Start 7444;	End 7677;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3	173	192	-	.	Target "NM_005641";	Start 5140;	End 5310;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2	172	190	-	.	Target "NM_005641";	Start 5139;	End 5309;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2112	2345	166	-	.	Target "NM_005641";	Start 7440;	End 7673;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1998	2099	148	-	.	Target "NM_005641";	Start 7348;	End 7449;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3291	3386	137	-	.	Target "NM_005641";	Start 9067;	End 9162;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	554	769	135	-	.	Target "NM_005641";	Start 5386;	End 5583;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1118	1225	125	-	.	Target "NM_005641";	Start 5941;	End 6039;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	5705	5878	83	-	.	Target "NM_005641";	Start 12081;	End 12278;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	5677	5877	76	-	.	Target "NM_005641";	Start 12065;	End 12277;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3036	3185	73	-	.	Target "NM_005641";	Start 6791;	End 6934;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3030	3167	67	-	.	Target "NM_005641";	Start 6242;	End 6364;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	930	1091	66	-	.	Target "NM_005641";	Start 5745;	End 5909;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3052	3177	65	-	.	Target "NM_005641";	Start 10013;	End 10180;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4035	4103	65	-	.	Target "NM_005641";	Start 2824;	End 2886;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2978	3142	64	-	.	Target "NM_005641";	Start 2639;	End 2797;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3139	3177	61	-	.	Target "NM_005641";	Start 1113;	End 1151;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3915	4103	60	-	.	Target "NM_005641";	Start 8367;	End 8549;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2999	3148	60	-	.	Target "NM_005641";	Start 686;	End 817;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3136	3180	59	-	.	Target "NM_005641";	Start 10439;	End 10483;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3089	3190	58	-	.	Target "NM_005641";	Start 884;	End 994;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4041	4103	57	-	.	Target "NM_005641";	Start 10281;	End 10340;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2769	2870	57	-	.	Target "NM_005641";	Start 5032;	End 5118;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4041	4103	57	-	.	Target "NM_005641";	Start 3807;	End 3863;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3121	3177	56	-	.	Target "NM_005641";	Start 1405;	End 1461;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	638	715	56	-	.	Target "NM_005641";	Start 10988;	End 11065;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3115	3186	55	-	.	Target "NM_005641";	Start 6849;	End 6935;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3089	3166	55	-	.	Target "NM_005641";	Start 4821;	End 4907;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	399	542	54	-	.	Target "NM_005641";	Start 1789;	End 1911;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2789	2944	54	-	.	Target "NM_005641";	Start 1282;	End 1452;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3041	3163	54	-	.	Target "NM_005641";	Start 2112;	End 2240;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	5574	5693	53	-	.	Target "NM_005641";	Start 11203;	End 11310;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2728	3000	53	-	.	Target "NM_005641";	Start 4572;	End 4838;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2986	3189	53	-	.	Target "NM_005641";	Start 3493;	End 3678;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	399	503	53	-	.	Target "NM_005641";	Start 9591;	End 9707;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	405	467	52	-	.	Target "NM_005641";	Start 1930;	End 1992;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2785	3006	52	-	.	Target "NM_005641";	Start 2692;	End 2925;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3142	3171	52	-	.	Target "NM_005641";	Start 3807;	End 3836;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3139	3195	52	-	.	Target "NM_005641";	Start 1558;	End 1614;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	224	295	51	-	.	Target "NM_005641";	Start 298;	End 369;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2784	2855	51	-	.	Target "NM_005641";	Start 10004;	End 10063;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2787	2855	51	-	.	Target "NM_005641";	Start 6611;	End 6673;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3135	3176	51	-	.	Target "NM_005641";	Start 1109;	End 1150;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3032	3148	50	-	.	Target "NM_005641";	Start 8535;	End 8663;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3918	4088	50	-	.	Target "NM_005641";	Start 8541;	End 8705;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3122	3190	50	-	.	Target "NM_005641";	Start 2945;	End 3013;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3577	3663	50	-	.	Target "NM_005641";	Start 3545;	End 3634;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2659	2865	49	-	.	Target "NM_005641";	Start 5924;	End 6115;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3121	3171	49	-	.	Target "NM_005641";	Start 3480;	End 3527;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3118	3171	49	-	.	Target "NM_005641";	Start 2809;	End 2859;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	399	521	48	-	.	Target "NM_005641";	Start 4200;	End 4301;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3135	3173	48	-	.	Target "NM_005641";	Start 10438;	End 10476;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2905	3006	48	-	.	Target "NM_005641";	Start 6192;	End 6299;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4020	4103	48	-	.	Target "NM_005641";	Start 2202;	End 2279;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3139	3189	47	-	.	Target "NM_005641";	Start 10278;	End 10328;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1973	2083	47	-	.	Target "NM_005641";	Start 1531;	End 1635;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4043	4114	47	-	.	Target "NM_005641";	Start 3809;	End 3883;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4227	4262	46	-	.	Target "NM_005641";	Start 10701;	End 10736;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3142	3177	46	-	.	Target "NM_005641";	Start 8487;	End 8522;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2915	2968	46	-	.	Target "NM_005641";	Start 10442;	End 10495;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3577	3639	46	-	.	Target "NM_005641";	Start 10736;	End 10804;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3077	3163	46	-	.	Target "NM_005641";	Start 6691;	End 6771;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1179	1295	46	-	.	Target "NM_005641";	Start 7256;	End 7369;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4040	4096	46	-	.	Target "NM_005641";	Start 6338;	End 6394;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2915	2968	46	-	.	Target "NM_005641";	Start 3495;	End 3548;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	903	1046	45	-	.	Target "NM_005641";	Start 41;	End 181;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1882	1920	45	-	.	Target "NM_005641";	Start 9717;	End 9755;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2138	2248	45	-	.	Target "NM_005641";	Start 207;	End 329;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4556	4660	45	-	.	Target "NM_005641";	Start 6331;	End 6435;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2802	2915	45	-	.	Target "NM_005641";	Start 3675;	End 3797;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4041	4067	45	-	.	Target "NM_005641";	Start 812;	End 838;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3104	3148	44	-	.	Target "NM_005641";	Start 10530;	End 10574;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	949	984	44	-	.	Target "NM_005641";	Start 6325;	End 6360;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	2110	2166	44	-	.	Target "NM_005641";	Start 12002;	End 12058;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4348	4377	44	-	.	Target "NM_005641";	Start 2060;	End 2089;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3140	3181	43	-	.	Target "NM_005641";	Start 8790;	End 8831;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4529	4606	43	-	.	Target "NM_005641";	Start 10185;	End 10262;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	1189	1383	43	-	.	Target "NM_005641";	Start 6370;	End 6537;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3119	3193	43	-	.	Target "NM_005641";	Start 4864;	End 4938;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	3120	3167	43	-	.	Target "NM_005641";	Start 1542;	End 1586;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	632	706	43	-	.	Target "NM_005641";	Start 9145;	End 9219;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4355	4378	43	-	.	Target "NM_005641";	Start 2069;	End 2092;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4352	4402	43	-	.	Target "NM_005641";	Start 2070;	End 2120;	Strand -;	Frame .;	
227s Warning: unexpected tab character in last column, line truncated:
227s NM_009315	TBLASTX	hsp	4639	4668	43	-	.	Target "NM_005641";	Start 3306;	End 3335;	Strand -;	Frame .;	
227s is okay.
227s /usr/share/doc/gff2ps/test-data/Hsap_BTK_annotation.gff: is okay.
227s /usr/share/doc/gff2ps/test-data/Hsap_BTK_geneid.gff: is okay.
227s /usr/share/doc/gff2ps/test-data/Hsap_BTK_genscan.gff: Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	1728	1787	 0.09	-	0	gene_1	# AA 212:231
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	2506	2618	 2.93	-	2	gene_1	# AA 174:211
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	4112	4225	 0.50	-	2	gene_1	# AA 136:174
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	8833	8959	-0.24	-	0	gene_1	# AA  94:136
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	9956	10089	 1.98	-	2	gene_1	# AA  49: 93
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	13081	13159	 0.13	-	0	gene_1	# AA  23: 49
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	First	13984	14049	-0.61	-	0	gene_1	# AA   1: 22
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Terminal	17520	17785	 4.22	-	2	gene_2	# AA  86:174
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	First	19296	19551	14.31	-	0	gene_2	# AA   1: 86
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Terminal	76391	76462	 1.12	-	0	gene_3	# AA 636:659
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	79700	79857	 1.52	-	2	gene_3	# AA 583:635
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	80376	80494	 0.93	-	1	gene_3	# AA 543:583
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	81136	81200	 0.46	-	0	gene_3	# AA 522:543
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	82558	82774	 5.08	-	1	gene_3	# AA 449:521
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	83290	83533	 4.90	-	2	gene_3	# AA 368:449
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	84816	84943	 0.10	-	1	gene_3	# AA 325:368
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	85123	85202	 1.44	-	0	gene_3	# AA 299:325
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	85799	85853	 0.18	-	1	gene_3	# AA 280:298
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	86594	86656	 1.66	-	1	gene_3	# AA 259:280
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	87074	87261	 4.48	-	0	gene_3	# AA 197:259
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	88679	88746	-0.20	-	2	gene_3	# AA 174:196
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	89067	89195	 2.37	-	2	gene_3	# AA 131:174
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	96504	96585	-1.14	-	0	gene_3	# AA 104:131
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	98139	98207	 2.20	-	0	gene_3	# AA  81:103
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	101042	101140	 1.03	-	0	gene_3	# AA  48: 80
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	First	101650	101790	 2.04	-	0	gene_3	# AA   1: 47
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	First	117154	117294	-1.72	+	0	gene_4	# AA   1: 47
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	117965	118070	 4.71	+	0	gene_4	# AA  48: 83
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	118261	118328	 1.96	+	2	gene_4	# AA  83:105
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Terminal	122234	122254	-1.95	+	0	gene_4	# AA 106:112
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Terminal	124315	124605	 1.49	-	0	gene_5	# AA 321:417
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	124876	125073	 4.19	-	0	gene_5	# AA 255:320
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	125291	125452	 1.81	-	0	gene_5	# AA 201:254
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	128085	128315	 6.42	-	0	gene_5	# AA 124:200
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	130317	130491	 3.37	-	1	gene_5	# AA  65:123
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	First	134216	134409	 3.06	-	0	gene_5	# AA   1: 65
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Single	138576	139844	33.14	+	0	gene_6	# AA   1:423
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	First	144801	145043	 4.49	+	0	gene_7	# AA   1: 81
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	170448	170661	 4.00	+	0	gene_7	# AA  82:153
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	geneid_v1.0	Internal	172504	172550	 0.78	+	2	gene_7	# AA 153:168
227s is okay.
227s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgp3X.gff: is okay.
227s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgpFO.gff: Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	4565	4627	8.56	-	0	gene_1	#	AA	149:169
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	9956	10143	23.75	-	2	gene_1	#	AA	86:148
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	First	19296	19551	15.97	-	0	gene_1	#	AA	1:	86
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	First	62698	62700	-9.86	+	0	gene_2	#	AA	1:	1
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Terminal	67179	67508	54.90	+	0	gene_2	#	AA	2:111
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Terminal	73005	73235	25.73	-	0	gene_3	#	AA	75:151
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	First	74949	75170	18.73	-	0	gene_3	#	AA	1:	74
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Terminal	79661	79857	26.63	-	2	gene_4	#	AA	643:708
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	80376	80494	21.80	-	1	gene_4	#	AA	603:643
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	81136	81200	-1.59	-	0	gene_4	#	AA	582:603
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	82558	82813	51.33	-	1	gene_4	#	AA	496:581
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	83290	83533	36.85	-	2	gene_4	#	AA	415:496
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	84015	84089	4.73	-	2	gene_4	#	AA	390:415
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	84816	84943	22.24	-	1	gene_4	#	AA	347:390
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	85123	85202	-0.04	-	0	gene_4	#	AA	321:347
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	85799	85853	7.75	-	1	gene_4	#	AA	302:320
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	86594	86656	13.00	-	1	gene_4	#	AA	281:302
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	87074	87261	30.63	-	0	gene_4	#	AA	219:281
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	88679	88746	2.93	-	2	gene_4	#	AA	196:218
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	89067	89195	23.15	-	2	gene_4	#	AA	153:196
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	96504	96585	8.97	-	0	gene_4	#	AA	126:153
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	98139	98207	0.53	-	0	gene_4	#	AA	103:125
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	101042	101140	16.57	-	0	gene_4	#	AA	70:102
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	First	101650	101856	25.46	-	0	gene_4	#	AA	1:	69
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	First	117550	117552	-2.98	+	0	gene_5	#	AA	1:	1
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	117965	118070	22.92	+	0	gene_5	#	AA	2:	37
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	118261	118328	16.58	+	2	gene_5	#	AA	37:	59
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	121841	121963	15.59	+	0	gene_5	#	AA	60:100
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Terminal	122234	122254	-4.89	+	0	gene_5	#	AA	101:107
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Terminal	124315	124605	22.92	-	0	gene_6	#	AA	299:395
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	124876	125073	18.14	-	0	gene_6	#	AA	233:298
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	125291	125439	21.75	-	2	gene_6	#	AA	183:232
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	128138	128315	26.47	-	0	gene_6	#	AA	124:183
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Internal	130317	130491	29.80	-	1	gene_6	#	AA	65:123
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	First	134216	134409	27.80	-	0	gene_6	#	AA	1:	65
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Single	138495	139844	385.08	+	0	gene_7	#	AA	1:450
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	First	143504	143527	-6.11	+	0	gene_8	#	AA	1:	8
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.3X	Terminal	170195	170470	60.77	+	0	gene_8	#	AA	9:100
227s is okay.
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	2506	2618	3.13	-	2	gene_1	#	AA	86:123
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	First	19296	19551	15.97	-	0	gene_1	#	AA	1:	86
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Terminal	73005	73166	23.20	-	0	gene_2	#	AA	45:	98
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	First	75039	75170	14.19	-	0	gene_2	#	AA	1:	44
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Terminal	76391	76462	7.44	-	0	gene_3	#	AA	692:715
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	79700	79857	27.01	-	2	gene_3	#	AA	639:691
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	80376	80494	22.45	-	1	gene_3	#	AA	599:639
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	81136	81200	8.61	-	0	gene_3	#	AA	578:599
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	82558	82774	44.53	-	1	gene_3	#	AA	505:577
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	83290	83533	36.85	-	2	gene_3	#	AA	424:505
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	84015	84089	4.73	-	2	gene_3	#	AA	399:424
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	84816	84943	22.49	-	1	gene_3	#	AA	356:399
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	85123	85202	-0.04	-	0	gene_3	#	AA	330:356
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	85799	85853	7.75	-	1	gene_3	#	AA	311:329
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	86594	86656	13.00	-	1	gene_3	#	AA	290:311
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	87074	87261	30.63	-	0	gene_3	#	AA	228:290
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	88679	88746	2.93	-	2	gene_3	#	AA	205:227
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	89067	89195	23.15	-	2	gene_3	#	AA	162:205
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	96504	96585	8.97	-	0	gene_3	#	AA	135:162
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	98139	98207	9.18	-	0	gene_3	#	AA	112:134
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	101042	101140	16.57	-	0	gene_3	#	AA	79:111
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	101650	101839	30.76	-	1	gene_3	#	AA	15:	78
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	First	112445	112488	-1.77	-	0	gene_3	#	AA	1:	15
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	First	117550	117552	-2.98	+	0	gene_4	#	AA	1:	1
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	117965	118070	22.92	+	0	gene_4	#	AA	2:	37
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	118261	118328	16.58	+	2	gene_4	#	AA	37:	59
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	121841	121963	15.59	+	0	gene_4	#	AA	60:100
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Terminal	122234	122254	-4.89	+	0	gene_4	#	AA	101:107
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Terminal	124315	124605	22.92	-	0	gene_5	#	AA	334:430
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	124876	125073	37.51	-	0	gene_5	#	AA	268:333
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	125291	125452	26.77	-	0	gene_5	#	AA	214:267
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	127172	127263	5.78	-	2	gene_5	#	AA	183:213
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	128138	128315	37.95	-	0	gene_5	#	AA	124:183
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	130317	130491	30.15	-	1	gene_5	#	AA	65:123
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	First	134216	134409	27.80	-	0	gene_5	#	AA	1:	65
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Single	138495	139844	270.80	+	0	gene_6	#	AA	1:450
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	First	170637	170661	-0.90	+	0	gene_7	#	AA	1:	9
227s Warning: unexpected tab character in last column, line truncated:
227s Hsap_BTK	SGP.homol	Internal	172504	172550	2.43	+	2	gene_7	#	AA	9:	24
227s /usr/share/htslib-test/test/tabix/gff_file.gff: is okay.
227s /usr/share/doc/libbio-graphics-perl/examples/feature_data.gff: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gff: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/gms2_example.gff3: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/hybrid1.gff3: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/intro_docs_example.gff: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/issue167.gff: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/issue_197.gff: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/keyval_sep_in_attrs.gff: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/random-chr.gff: is okay.
227s /usr/lib/python3/dist-packages/gffutils/test/data/synthetic.gff3: is okay.
227s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/ITAG4.1_gene_models.subset.gff: is okay.
227s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/NC_011025.gff: is okay.
227s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v1.gff3: is okay.
228s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.gff3: is okay.
228s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff: is okay.
228s /usr/lib/R/site-library/Gviz/extdata/test.gff: is okay.
228s /usr/lib/R/site-library/Gviz/extdata/test.gff1: is okay.
228s /usr/lib/R/site-library/Gviz/extdata/test.gff3: is okay.
228s /usr/lib/R/site-library/Rhtslib/testdata/tabix/gff_file.gff: is okay.
228s /usr/lib/R/site-library/rtracklayer/tests/gtf.gff: is okay.
228s /usr/lib/R/site-library/rtracklayer/tests/v1.gff: Warning: unexpected tab character in last column, line truncated:
228s Mm.16.ENSMUST00000040592.1	EnsEMBL	exon	22572990	22573061	.	-	.	gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1";	
228s Warning: unexpected tab character in last column, line truncated:
228s Mm.16.ENSMUST00000040592.1	EnsEMBL	CDS	22572990	22573010	.	-	0	gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1";	
228s Warning: unexpected tab character in last column, line truncated:
228s Mm.16.ENSMUST00000040592.1	EnsEMBL	exon	22568081	22568323	.	-	.	gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1";	
228s Warning: unexpected tab character in last column, line truncated:
228s Mm.16.ENSMUST00000040592.1	EnsEMBL	CDS	22568081	22568323	.	-	0	gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1";	
228s Warning: unexpected tab character in last column, line truncated:
228s Mm.16.ENSMUST00000040592.1	EnsEMBL	exon	22566859	22567246	.	-	.	gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1";	
228s Warning: unexpected tab character in last column, line truncated:
228s Mm.16.ENSMUST00000040592.1	EnsEMBL	CDS	22566977	22567246	.	-	0	gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1";	
228s is okay.
228s /usr/lib/R/site-library/rtracklayer/tests/v3.gff: is okay.
228s /usr/share/doc/seqan-apps/gustaf/example/stellar.gff: is okay.
228s /usr/share/doc/seqan-apps/insegt/example/annotations.gff: is okay.
228s /usr/share/doc/seqan-apps/insegt/example/readOutput.gff: is okay.
228s /usr/share/doc/seqan-apps/insegt/example/tupleOutput.gff: is okay.
228s /usr/share/doc/seqan-apps/snp_store/example/exampleReads.gff: is okay.
228s /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff: is okay.
228s /usr/share/doc/cnvkit/examples/test/formats/example.gff: is okay.
228s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v21.gff3: is okay.
228s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v22.gff3: is okay.
228s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3: is okay.
228s /usr/share/doc/proteinortho/examples/C.gff: is okay.
228s /usr/share/doc/proteinortho/examples/C2.gff: is okay.
228s /usr/share/doc/proteinortho/examples/E.gff: is okay.
228s /usr/share/doc/proteinortho/examples/L.gff: is okay.
228s /usr/share/doc/proteinortho/examples/M.gff: is okay.
228s /usr/lib/python3/dist-packages/pybedtools/test/data/d.gff: is okay.
228s /usr/lib/python3/dist-packages/pybedtools/test/data/exons.gff: is okay.
228s /usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff: is okay.
228s /usr/lib/python3/dist-packages/pybedtools/test/data/hg19.gff: is okay.
228s /usr/share/spades/test_dataset/genes_1K.gff: is okay.
228s /usr/share/spades/test_dataset/operons_1K.gff: is okay.
228s autopkgtest [01:06:47]: test run-tests: -----------------------]
228s run-tests            PASS
228s autopkgtest [01:06:47]: test run-tests:  - - - - - - - - - - results - - - - - - - - - -
228s autopkgtest [01:06:47]: @@@@@@@@@@@@@@@@@@@@ summary
228s run-tests            PASS
238s nova [W] Skipping flock for amd64
238s Creating nova instance adt-oracular-amd64-gffread-20240621-010258-juju-7f2275-prod-proposed-migration-environment-3-10d9c6a4-7211-4cb6-b8a9-10f098d97622 from image adt/ubuntu-oracular-amd64-server-20240620.img (UUID 396bb871-fedc-4ba1-9ffb-dea0dc1b4a1c)...