0s autopkgtest [00:18:55]: starting date and time: 2024-06-08 00:18:55+0000 0s autopkgtest [00:18:55]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [00:18:55]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jmkvhcxv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade esda --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-84.secgroup --name adt-oracular-amd64-esda-20240608-001855-juju-7f2275-prod-proposed-migration-environment-3-483f98b9-2d10-4cba-8827-5d1ee1fdfaac --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 285s autopkgtest [00:23:40]: testbed dpkg architecture: amd64 286s autopkgtest [00:23:41]: testbed apt version: 2.9.3 286s autopkgtest [00:23:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 286s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 286s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 286s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [339 kB] 286s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2852 B] 286s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 286s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [37.8 kB] 286s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [65.6 kB] 286s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [9340 B] 286s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [27.4 kB] 286s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [124 kB] 286s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [300 kB] 286s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3368 B] 286s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [9280 B] 286s Fetched 1081 kB in 0s (3479 kB/s) 286s Reading package lists... 288s Reading package lists... 288s Building dependency tree... 288s Reading state information... 288s Calculating upgrade... 288s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 288s Reading package lists... 289s Building dependency tree... 289s Reading state information... 289s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 289s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 289s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 289s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 289s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 290s Reading package lists... 290s Reading package lists... 291s Building dependency tree... 291s Reading state information... 291s Calculating upgrade... 291s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 291s Reading package lists... 291s Building dependency tree... 291s Reading state information... 292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 292s autopkgtest [00:23:47]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 292s autopkgtest [00:23:47]: @@@@@@@@@@@@@@@@@@@@ apt-source esda 294s Get:1 http://ftpmaster.internal/ubuntu oracular/universe esda 2.5.1-3 (dsc) [2606 B] 294s Get:2 http://ftpmaster.internal/ubuntu oracular/universe esda 2.5.1-3 (tar) [44.4 MB] 294s Get:3 http://ftpmaster.internal/ubuntu oracular/universe esda 2.5.1-3 (diff) [4416 B] 294s gpgv: Signature made Sun Mar 24 22:10:47 2024 UTC 294s gpgv: using RSA key A8194D5D117E2D02DF30D30D07A9F562313446CD 294s gpgv: Can't check signature: No public key 294s dpkg-source: warning: cannot verify inline signature for ./esda_2.5.1-3.dsc: no acceptable signature found 295s autopkgtest [00:23:50]: testing package esda version 2.5.1-3 296s autopkgtest [00:23:51]: build not needed 297s autopkgtest [00:23:52]: test command1: preparing testbed 298s Reading package lists... 298s Building dependency tree... 298s Reading state information... 298s Starting pkgProblemResolver with broken count: 0 298s Starting 2 pkgProblemResolver with broken count: 0 298s Done 299s The following additional packages will be installed: 299s gdal-data gdal-plugins libaec0 libarmadillo12 libarpack2t64 libblas3 299s libblosc1 libcfitsio10t64 libfreexl1 libfyba0t64 libgdal35 libgeos-c1t64 299s libgeos3.12.1t64 libgeotiff5 libgfortran5 libgif7 libgomp1 libhdf4-0-alt 299s libhdf5-103-1t64 libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc 299s libjs-underscore libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 299s liblbfgsb0 liblcms2-2 libltdl7 libminizip1t64 libmysqlclient21 299s libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpoppler134 299s libpq5 libproj25 libqhull-r8.0 librttopo1 libsnappy1v5 libspatialite8t64 299s libsuperlu6 libsz2 liburiparser1 libxerces-c3.2t64 mysql-common proj-data 299s python-esda-doc python3-bs4 python3-click python3-click-plugins 299s python3-cligj python3-colorama python3-dateutil python3-decorator 299s python3-esda python3-fiona python3-geopandas python3-iniconfig 299s python3-joblib python3-libpysal python3-numpy python3-packaging 299s python3-pandas python3-pandas-lib python3-platformdirs python3-pluggy 299s python3-pyproj python3-pytest python3-scipy python3-shapely python3-sklearn 299s python3-sklearn-lib python3-soupsieve python3-threadpoolctl 299s python3-unittest2 unixodbc-common 299s Suggested packages: 299s geotiff-bin gdal-bin libgeotiff-epsg libhdf4-alt-dev hdf4-tools 299s liblcms2-utils odbc-postgresql tdsodbc ogdi-bin proj-bin python-libpysal-doc 299s gcc gfortran python-numpy-doc python3-dev python-pandas-doc 299s python3-statsmodels python-scipy-doc python3-matplotlib python3-dap 299s python-sklearn-doc ipython3 299s Recommended packages: 299s proj-bin javascript-common poppler-data python3-lxml python3-geopy 299s python3-matplotlib python3-psycopg2 python3-rtree python3-simplejson 299s python3-psutil python3-networkx python3-numba python3-sqlalchemy 299s python3-xarray python3-zstd python3-bottleneck python3-numexpr python3-odf 299s python3-openpyxl python3-html5lib python3-tables g++ | c++-compiler 299s python3-pil 299s The following NEW packages will be installed: 299s autopkgtest-satdep gdal-data gdal-plugins libaec0 libarmadillo12 299s libarpack2t64 libblas3 libblosc1 libcfitsio10t64 libfreexl1 libfyba0t64 299s libgdal35 libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 libgfortran5 libgif7 299s libgomp1 libhdf4-0-alt libhdf5-103-1t64 libhdf5-hl-100t64 libjs-jquery 299s libjs-sphinxdoc libjs-underscore libkmlbase1t64 libkmldom1t64 299s libkmlengine1t64 liblapack3 liblbfgsb0 liblcms2-2 libltdl7 libminizip1t64 299s libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 299s libopenjp2-7 libpoppler134 libpq5 libproj25 libqhull-r8.0 librttopo1 299s libsnappy1v5 libspatialite8t64 libsuperlu6 libsz2 liburiparser1 299s libxerces-c3.2t64 mysql-common proj-data python-esda-doc python3-bs4 299s python3-click python3-click-plugins python3-cligj python3-colorama 299s python3-dateutil python3-decorator python3-esda python3-fiona 299s python3-geopandas python3-iniconfig python3-joblib python3-libpysal 299s python3-numpy python3-packaging python3-pandas python3-pandas-lib 299s python3-platformdirs python3-pluggy python3-pyproj python3-pytest 299s python3-scipy python3-shapely python3-sklearn python3-sklearn-lib 299s python3-soupsieve python3-threadpoolctl python3-unittest2 unixodbc-common 299s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 299s Need to get 83.8 MB/83.8 MB of archives. 299s After this operation, 321 MB of additional disk space will be used. 299s Get:1 /tmp/autopkgtest.LVkY3x/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [744 B] 299s Get:2 http://ftpmaster.internal/ubuntu oracular/universe amd64 gdal-data all 3.9.0+dfsg-1 [268 kB] 299s Get:3 http://ftpmaster.internal/ubuntu oracular/universe amd64 gdal-plugins amd64 3.9.0+dfsg-1 [25.1 kB] 299s Get:4 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 299s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 299s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 299s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 299s Get:8 http://ftpmaster.internal/ubuntu oracular/universe amd64 libarpack2t64 amd64 3.9.1-1.1build2 [106 kB] 299s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1build1 [180 kB] 299s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 libarmadillo12 amd64 1:12.8.2+dfsg-1 [106 kB] 299s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 299s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 299s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcfitsio10t64 amd64 4.3.1-1.1build2 [528 kB] 299s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 299s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 libminizip1t64 amd64 1:1.3.dfsg-3.1ubuntu2 [22.2 kB] 299s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 299s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgeos3.12.1t64 amd64 3.12.1-3build1 [849 kB] 299s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgeos-c1t64 amd64 3.12.1-3build1 [94.5 kB] 299s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 proj-data all 9.4.1-1 [7892 kB] 299s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 libproj25 amd64 9.4.1-1 [1398 kB] 299s Get:21 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB] 299s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 299s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 299s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 299s Get:25 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 299s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 liburiparser1 amd64 0.9.7+dfsg-2build1 [35.8 kB] 299s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 299s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 299s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 299s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 mysql-common all 5.8+1.1.0build1 [6746 B] 299s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libmysqlclient21 amd64 8.0.37-1 [1254 kB] 299s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 299s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6 [472 kB] 299s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libltdl7 amd64 2.4.7-7build1 [40.3 kB] 299s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libodbc2 amd64 2.3.12-1ubuntu1 [158 kB] 299s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 unixodbc-common all 2.3.12-1ubuntu1 [8796 B] 299s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 libodbcinst2 amd64 2.3.12-1ubuntu1 [30.7 kB] 299s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 libogdi4.1 amd64 4.1.1+ds-4 [226 kB] 299s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 299s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 299s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 libpoppler134 amd64 24.02.0-1ubuntu10 [1113 kB] 299s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 libpq5 amd64 16.3-1 [140 kB] 299s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 299s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB] 299s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 299s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3 [917 kB] 299s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgdal35 amd64 3.9.0+dfsg-1 [8852 kB] 299s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 299s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 299s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 299s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-sphinxdoc all 7.2.6-8 [150 kB] 299s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 299s Get:53 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-esda-doc all 2.5.1-3 [11.8 MB] 299s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-soupsieve all 2.5-1 [33.0 kB] 299s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bs4 all 4.12.3-1 [109 kB] 299s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 299s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB] 299s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-click-plugins all 1.1.1-4 [9288 B] 299s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cligj all 0.7.2-2 [7788 B] 299s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 299s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 299s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 299s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 299s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB] 299s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 299s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-platformdirs all 4.2.1-1 [16.3 kB] 299s Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.11.4-10 [15.5 MB] 300s Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fiona amd64 1.9.6-1build1 [599 kB] 300s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pyproj amd64 3.6.1-4 [399 kB] 300s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-shapely amd64 2.0.4-1 [302 kB] 300s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-geopandas all 0.14.4-1 [1643 kB] 300s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-joblib all 1.3.2-2 [208 kB] 300s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 300s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-1 [3795 kB] 300s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sklearn all 1.4.2+dfsg-1 [2261 kB] 300s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-libpysal all 4.10-7 [256 kB] 300s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-esda all 2.5.1-3 [87.3 kB] 300s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 300s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 300s Get:80 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pytest all 8.2.2-1ubuntu1 [250 kB] 300s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unittest2 all 1.1.0-11 [76.0 kB] 300s Fetched 83.8 MB in 1s (116 MB/s) 300s Selecting previously unselected package gdal-data. 300s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74365 files and directories currently installed.) 300s Preparing to unpack .../00-gdal-data_3.9.0+dfsg-1_all.deb ... 300s Unpacking gdal-data (3.9.0+dfsg-1) ... 300s Selecting previously unselected package gdal-plugins:amd64. 300s Preparing to unpack .../01-gdal-plugins_3.9.0+dfsg-1_amd64.deb ... 300s Unpacking gdal-plugins:amd64 (3.9.0+dfsg-1) ... 300s Selecting previously unselected package libaec0:amd64. 300s Preparing to unpack .../02-libaec0_1.1.3-1_amd64.deb ... 300s Unpacking libaec0:amd64 (1.1.3-1) ... 300s Selecting previously unselected package libblas3:amd64. 300s Preparing to unpack .../03-libblas3_3.12.0-3build1_amd64.deb ... 300s Unpacking libblas3:amd64 (3.12.0-3build1) ... 300s Selecting previously unselected package libgfortran5:amd64. 300s Preparing to unpack .../04-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 300s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 300s Selecting previously unselected package liblapack3:amd64. 300s Preparing to unpack .../05-liblapack3_3.12.0-3build1_amd64.deb ... 300s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 300s Selecting previously unselected package libarpack2t64:amd64. 300s Preparing to unpack .../06-libarpack2t64_3.9.1-1.1build2_amd64.deb ... 300s Unpacking libarpack2t64:amd64 (3.9.1-1.1build2) ... 301s Selecting previously unselected package libsuperlu6:amd64. 301s Preparing to unpack .../07-libsuperlu6_6.0.1+dfsg1-1build1_amd64.deb ... 301s Unpacking libsuperlu6:amd64 (6.0.1+dfsg1-1build1) ... 301s Selecting previously unselected package libarmadillo12. 301s Preparing to unpack .../08-libarmadillo12_1%3a12.8.2+dfsg-1_amd64.deb ... 301s Unpacking libarmadillo12 (1:12.8.2+dfsg-1) ... 301s Selecting previously unselected package libsnappy1v5:amd64. 301s Preparing to unpack .../09-libsnappy1v5_1.2.1-1_amd64.deb ... 301s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 301s Selecting previously unselected package libblosc1:amd64. 301s Preparing to unpack .../10-libblosc1_1.21.5+ds-1build1_amd64.deb ... 301s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 301s Selecting previously unselected package libcfitsio10t64:amd64. 301s Preparing to unpack .../11-libcfitsio10t64_4.3.1-1.1build2_amd64.deb ... 301s Unpacking libcfitsio10t64:amd64 (4.3.1-1.1build2) ... 301s Selecting previously unselected package libfyba0t64:amd64. 301s Preparing to unpack .../12-libfyba0t64_4.1.1-11build1_amd64.deb ... 301s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 301s Selecting previously unselected package libminizip1t64:amd64. 301s Preparing to unpack .../13-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu2_amd64.deb ... 301s Unpacking libminizip1t64:amd64 (1:1.3.dfsg-3.1ubuntu2) ... 301s Selecting previously unselected package libfreexl1:amd64. 301s Preparing to unpack .../14-libfreexl1_2.0.0-1build2_amd64.deb ... 301s Unpacking libfreexl1:amd64 (2.0.0-1build2) ... 301s Selecting previously unselected package libgeos3.12.1t64:amd64. 301s Preparing to unpack .../15-libgeos3.12.1t64_3.12.1-3build1_amd64.deb ... 301s Unpacking libgeos3.12.1t64:amd64 (3.12.1-3build1) ... 301s Selecting previously unselected package libgeos-c1t64:amd64. 301s Preparing to unpack .../16-libgeos-c1t64_3.12.1-3build1_amd64.deb ... 301s Unpacking libgeos-c1t64:amd64 (3.12.1-3build1) ... 301s Selecting previously unselected package proj-data. 301s Preparing to unpack .../17-proj-data_9.4.1-1_all.deb ... 301s Unpacking proj-data (9.4.1-1) ... 301s Selecting previously unselected package libproj25:amd64. 301s Preparing to unpack .../18-libproj25_9.4.1-1_amd64.deb ... 301s Unpacking libproj25:amd64 (9.4.1-1) ... 301s Selecting previously unselected package libgeotiff5:amd64. 301s Preparing to unpack .../19-libgeotiff5_1.7.3-1_amd64.deb ... 301s Unpacking libgeotiff5:amd64 (1.7.3-1) ... 301s Selecting previously unselected package libgif7:amd64. 301s Preparing to unpack .../20-libgif7_5.2.2-1ubuntu1_amd64.deb ... 301s Unpacking libgif7:amd64 (5.2.2-1ubuntu1) ... 301s Selecting previously unselected package libsz2:amd64. 301s Preparing to unpack .../21-libsz2_1.1.3-1_amd64.deb ... 301s Unpacking libsz2:amd64 (1.1.3-1) ... 301s Selecting previously unselected package libhdf4-0-alt:amd64. 301s Preparing to unpack .../22-libhdf4-0-alt_4.3.0-1_amd64.deb ... 301s Unpacking libhdf4-0-alt:amd64 (4.3.0-1) ... 301s Selecting previously unselected package libhdf5-103-1t64:amd64. 301s Preparing to unpack .../23-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 301s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 301s Selecting previously unselected package liburiparser1:amd64. 301s Preparing to unpack .../24-liburiparser1_0.9.7+dfsg-2build1_amd64.deb ... 301s Unpacking liburiparser1:amd64 (0.9.7+dfsg-2build1) ... 301s Selecting previously unselected package libkmlbase1t64:amd64. 301s Preparing to unpack .../25-libkmlbase1t64_1.3.0-12build1_amd64.deb ... 301s Unpacking libkmlbase1t64:amd64 (1.3.0-12build1) ... 301s Selecting previously unselected package libkmldom1t64:amd64. 301s Preparing to unpack .../26-libkmldom1t64_1.3.0-12build1_amd64.deb ... 301s Unpacking libkmldom1t64:amd64 (1.3.0-12build1) ... 301s Selecting previously unselected package libkmlengine1t64:amd64. 301s Preparing to unpack .../27-libkmlengine1t64_1.3.0-12build1_amd64.deb ... 301s Unpacking libkmlengine1t64:amd64 (1.3.0-12build1) ... 301s Selecting previously unselected package mysql-common. 301s Preparing to unpack .../28-mysql-common_5.8+1.1.0build1_all.deb ... 301s Unpacking mysql-common (5.8+1.1.0build1) ... 301s Selecting previously unselected package libmysqlclient21:amd64. 301s Preparing to unpack .../29-libmysqlclient21_8.0.37-1_amd64.deb ... 301s Unpacking libmysqlclient21:amd64 (8.0.37-1) ... 301s Selecting previously unselected package libhdf5-hl-100t64:amd64. 301s Preparing to unpack .../30-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 301s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 301s Selecting previously unselected package libnetcdf19t64:amd64. 301s Preparing to unpack .../31-libnetcdf19t64_1%3a4.9.2-6_amd64.deb ... 301s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6) ... 301s Selecting previously unselected package libltdl7:amd64. 301s Preparing to unpack .../32-libltdl7_2.4.7-7build1_amd64.deb ... 301s Unpacking libltdl7:amd64 (2.4.7-7build1) ... 302s Selecting previously unselected package libodbc2:amd64. 302s Preparing to unpack .../33-libodbc2_2.3.12-1ubuntu1_amd64.deb ... 302s Unpacking libodbc2:amd64 (2.3.12-1ubuntu1) ... 302s Selecting previously unselected package unixodbc-common. 302s Preparing to unpack .../34-unixodbc-common_2.3.12-1ubuntu1_all.deb ... 302s Unpacking unixodbc-common (2.3.12-1ubuntu1) ... 302s Selecting previously unselected package libodbcinst2:amd64. 302s Preparing to unpack .../35-libodbcinst2_2.3.12-1ubuntu1_amd64.deb ... 302s Unpacking libodbcinst2:amd64 (2.3.12-1ubuntu1) ... 302s Selecting previously unselected package libogdi4.1:amd64. 302s Preparing to unpack .../36-libogdi4.1_4.1.1+ds-4_amd64.deb ... 302s Unpacking libogdi4.1:amd64 (4.1.1+ds-4) ... 302s Selecting previously unselected package libopenjp2-7:amd64. 302s Preparing to unpack .../37-libopenjp2-7_2.5.0-2build3_amd64.deb ... 302s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 302s Selecting previously unselected package liblcms2-2:amd64. 302s Preparing to unpack .../38-liblcms2-2_2.14-2build1_amd64.deb ... 302s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 302s Selecting previously unselected package libpoppler134:amd64. 302s Preparing to unpack .../39-libpoppler134_24.02.0-1ubuntu10_amd64.deb ... 302s Unpacking libpoppler134:amd64 (24.02.0-1ubuntu10) ... 302s Selecting previously unselected package libpq5:amd64. 302s Preparing to unpack .../40-libpq5_16.3-1_amd64.deb ... 302s Unpacking libpq5:amd64 (16.3-1) ... 302s Selecting previously unselected package libqhull-r8.0:amd64. 302s Preparing to unpack .../41-libqhull-r8.0_2020.2-6build1_amd64.deb ... 302s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 302s Selecting previously unselected package librttopo1:amd64. 302s Preparing to unpack .../42-librttopo1_1.1.0-3build2_amd64.deb ... 302s Unpacking librttopo1:amd64 (1.1.0-3build2) ... 302s Selecting previously unselected package libspatialite8t64:amd64. 302s Preparing to unpack .../43-libspatialite8t64_5.1.0-3build1_amd64.deb ... 302s Unpacking libspatialite8t64:amd64 (5.1.0-3build1) ... 302s Selecting previously unselected package libxerces-c3.2t64:amd64. 302s Preparing to unpack .../44-libxerces-c3.2t64_3.2.4+debian-1.3_amd64.deb ... 302s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3) ... 302s Selecting previously unselected package libgdal35:amd64. 302s Preparing to unpack .../45-libgdal35_3.9.0+dfsg-1_amd64.deb ... 302s Unpacking libgdal35:amd64 (3.9.0+dfsg-1) ... 302s Selecting previously unselected package libgomp1:amd64. 302s Preparing to unpack .../46-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 302s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 302s Selecting previously unselected package libjs-jquery. 302s Preparing to unpack .../47-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 302s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 302s Selecting previously unselected package libjs-underscore. 302s Preparing to unpack .../48-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 302s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 302s Selecting previously unselected package libjs-sphinxdoc. 302s Preparing to unpack .../49-libjs-sphinxdoc_7.2.6-8_all.deb ... 302s Unpacking libjs-sphinxdoc (7.2.6-8) ... 302s Selecting previously unselected package liblbfgsb0:amd64. 302s Preparing to unpack .../50-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 302s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 302s Selecting previously unselected package python-esda-doc. 302s Preparing to unpack .../51-python-esda-doc_2.5.1-3_all.deb ... 302s Unpacking python-esda-doc (2.5.1-3) ... 302s Selecting previously unselected package python3-soupsieve. 302s Preparing to unpack .../52-python3-soupsieve_2.5-1_all.deb ... 302s Unpacking python3-soupsieve (2.5-1) ... 302s Selecting previously unselected package python3-bs4. 302s Preparing to unpack .../53-python3-bs4_4.12.3-1_all.deb ... 302s Unpacking python3-bs4 (4.12.3-1) ... 302s Selecting previously unselected package python3-colorama. 302s Preparing to unpack .../54-python3-colorama_0.4.6-4_all.deb ... 302s Unpacking python3-colorama (0.4.6-4) ... 303s Selecting previously unselected package python3-click. 303s Preparing to unpack .../55-python3-click_8.1.7-1_all.deb ... 303s Unpacking python3-click (8.1.7-1) ... 303s Selecting previously unselected package python3-click-plugins. 303s Preparing to unpack .../56-python3-click-plugins_1.1.1-4_all.deb ... 303s Unpacking python3-click-plugins (1.1.1-4) ... 303s Selecting previously unselected package python3-cligj. 303s Preparing to unpack .../57-python3-cligj_0.7.2-2_all.deb ... 303s Unpacking python3-cligj (0.7.2-2) ... 303s Selecting previously unselected package python3-dateutil. 303s Preparing to unpack .../58-python3-dateutil_2.9.0-2_all.deb ... 303s Unpacking python3-dateutil (2.9.0-2) ... 303s Selecting previously unselected package python3-decorator. 303s Preparing to unpack .../59-python3-decorator_5.1.1-5_all.deb ... 303s Unpacking python3-decorator (5.1.1-5) ... 303s Selecting previously unselected package python3-numpy. 303s Preparing to unpack .../60-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 303s Unpacking python3-numpy (1:1.26.4+ds-10) ... 303s Selecting previously unselected package python3-packaging. 303s Preparing to unpack .../61-python3-packaging_24.0-1_all.deb ... 303s Unpacking python3-packaging (24.0-1) ... 303s Selecting previously unselected package python3-pandas-lib:amd64. 303s Preparing to unpack .../62-python3-pandas-lib_2.1.4+dfsg-8_amd64.deb ... 303s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 303s Selecting previously unselected package python3-pandas. 303s Preparing to unpack .../63-python3-pandas_2.1.4+dfsg-8_all.deb ... 303s Unpacking python3-pandas (2.1.4+dfsg-8) ... 303s Selecting previously unselected package python3-platformdirs. 303s Preparing to unpack .../64-python3-platformdirs_4.2.1-1_all.deb ... 303s Unpacking python3-platformdirs (4.2.1-1) ... 303s Selecting previously unselected package python3-scipy. 303s Preparing to unpack .../65-python3-scipy_1.11.4-10_amd64.deb ... 303s Unpacking python3-scipy (1.11.4-10) ... 304s Selecting previously unselected package python3-fiona. 304s Preparing to unpack .../66-python3-fiona_1.9.6-1build1_amd64.deb ... 304s Unpacking python3-fiona (1.9.6-1build1) ... 304s Selecting previously unselected package python3-pyproj. 304s Preparing to unpack .../67-python3-pyproj_3.6.1-4_amd64.deb ... 304s Unpacking python3-pyproj (3.6.1-4) ... 304s Selecting previously unselected package python3-shapely. 304s Preparing to unpack .../68-python3-shapely_2.0.4-1_amd64.deb ... 304s Unpacking python3-shapely (2.0.4-1) ... 304s Selecting previously unselected package python3-geopandas. 304s Preparing to unpack .../69-python3-geopandas_0.14.4-1_all.deb ... 304s Unpacking python3-geopandas (0.14.4-1) ... 304s Selecting previously unselected package python3-joblib. 304s Preparing to unpack .../70-python3-joblib_1.3.2-2_all.deb ... 304s Unpacking python3-joblib (1.3.2-2) ... 304s Selecting previously unselected package python3-threadpoolctl. 304s Preparing to unpack .../71-python3-threadpoolctl_3.1.0-1_all.deb ... 304s Unpacking python3-threadpoolctl (3.1.0-1) ... 304s Selecting previously unselected package python3-sklearn-lib:amd64. 304s Preparing to unpack .../72-python3-sklearn-lib_1.4.2+dfsg-1_amd64.deb ... 304s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-1) ... 304s Selecting previously unselected package python3-sklearn. 304s Preparing to unpack .../73-python3-sklearn_1.4.2+dfsg-1_all.deb ... 304s Unpacking python3-sklearn (1.4.2+dfsg-1) ... 304s Selecting previously unselected package python3-libpysal. 304s Preparing to unpack .../74-python3-libpysal_4.10-7_all.deb ... 304s Unpacking python3-libpysal (4.10-7) ... 305s Selecting previously unselected package python3-esda. 305s Preparing to unpack .../75-python3-esda_2.5.1-3_all.deb ... 305s Unpacking python3-esda (2.5.1-3) ... 305s Selecting previously unselected package python3-iniconfig. 305s Preparing to unpack .../76-python3-iniconfig_1.1.1-2_all.deb ... 305s Unpacking python3-iniconfig (1.1.1-2) ... 305s Selecting previously unselected package python3-pluggy. 305s Preparing to unpack .../77-python3-pluggy_1.5.0-1_all.deb ... 305s Unpacking python3-pluggy (1.5.0-1) ... 305s Selecting previously unselected package python3-pytest. 305s Preparing to unpack .../78-python3-pytest_8.2.2-1ubuntu1_all.deb ... 305s Unpacking python3-pytest (8.2.2-1ubuntu1) ... 305s Selecting previously unselected package python3-unittest2. 305s Preparing to unpack .../79-python3-unittest2_1.1.0-11_all.deb ... 305s Unpacking python3-unittest2 (1.1.0-11) ... 305s Selecting previously unselected package autopkgtest-satdep. 305s Preparing to unpack .../80-1-autopkgtest-satdep.deb ... 305s Unpacking autopkgtest-satdep (0) ... 305s Setting up liblcms2-2:amd64 (2.14-2build1) ... 305s Setting up python3-iniconfig (1.1.1-2) ... 305s Setting up mysql-common (5.8+1.1.0build1) ... 305s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode 305s Setting up libmysqlclient21:amd64 (8.0.37-1) ... 305s Setting up proj-data (9.4.1-1) ... 305s Setting up libproj25:amd64 (9.4.1-1) ... 305s Setting up python3-joblib (1.3.2-2) ... 305s Setting up libogdi4.1:amd64 (4.1.1+ds-4) ... 305s Setting up python3-colorama (0.4.6-4) ... 305s Setting up libgeos3.12.1t64:amd64 (3.12.1-3build1) ... 305s Setting up libgeos-c1t64:amd64 (3.12.1-3build1) ... 305s Setting up python3-threadpoolctl (3.1.0-1) ... 305s Setting up libpq5:amd64 (16.3-1) ... 305s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 305s Setting up libxerces-c3.2t64:amd64 (3.2.4+debian-1.3) ... 305s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 305s Setting up python3-click (8.1.7-1) ... 306s Setting up libaec0:amd64 (1.1.3-1) ... 306s Setting up python3-platformdirs (4.2.1-1) ... 306s Setting up gdal-data (3.9.0+dfsg-1) ... 306s Setting up libgeotiff5:amd64 (1.7.3-1) ... 306s Setting up libsnappy1v5:amd64 (1.2.1-1) ... 306s Setting up python3-decorator (5.1.1-5) ... 306s Setting up libblas3:amd64 (3.12.0-3build1) ... 306s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 306s Setting up python3-packaging (24.0-1) ... 306s Setting up libcfitsio10t64:amd64 (4.3.1-1.1build2) ... 306s Setting up python3-unittest2 (1.1.0-11) ... 306s update-alternatives: using /usr/bin/python3-unit2 to provide /usr/bin/unit2 (unit2) in auto mode 306s Setting up python3-click-plugins (1.1.1-4) ... 306s Setting up unixodbc-common (2.3.12-1ubuntu1) ... 306s Setting up libltdl7:amd64 (2.4.7-7build1) ... 306s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 306s Setting up python3-pluggy (1.5.0-1) ... 306s Setting up libgif7:amd64 (5.2.2-1ubuntu1) ... 306s Setting up libodbc2:amd64 (2.3.12-1ubuntu1) ... 306s Setting up liburiparser1:amd64 (0.9.7+dfsg-2build1) ... 306s Setting up libfyba0t64:amd64 (4.1.1-11build1) ... 306s Setting up librttopo1:amd64 (1.1.0-3build2) ... 306s Setting up libminizip1t64:amd64 (1:1.3.dfsg-3.1ubuntu2) ... 306s Setting up libblosc1:amd64 (1.21.5+ds-1build1) ... 307s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 307s Setting up python3-dateutil (2.9.0-2) ... 307s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 307s Setting up libkmlbase1t64:amd64 (1.3.0-12build1) ... 307s Setting up python3-soupsieve (2.5-1) ... 307s Setting up libsz2:amd64 (1.1.3-1) ... 307s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 307s Setting up gdal-plugins:amd64 (3.9.0+dfsg-1) ... 307s Setting up libodbcinst2:amd64 (2.3.12-1ubuntu1) ... 307s Setting up liblapack3:amd64 (3.12.0-3build1) ... 307s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 307s Setting up libarpack2t64:amd64 (3.9.1-1.1build2) ... 307s Setting up libpoppler134:amd64 (24.02.0-1ubuntu10) ... 307s Setting up python3-pytest (8.2.2-1ubuntu1) ... 307s Setting up python3-cligj (0.7.2-2) ... 307s Setting up libsuperlu6:amd64 (6.0.1+dfsg1-1build1) ... 307s Setting up python3-bs4 (4.12.3-1) ... 308s Setting up libkmldom1t64:amd64 (1.3.0-12build1) ... 308s Setting up python3-numpy (1:1.26.4+ds-10) ... 310s Setting up libjs-sphinxdoc (7.2.6-8) ... 310s Setting up libhdf4-0-alt:amd64 (4.3.0-1) ... 310s Setting up libfreexl1:amd64 (2.0.0-1build2) ... 310s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 310s Setting up libarmadillo12 (1:12.8.2+dfsg-1) ... 310s Setting up python-esda-doc (2.5.1-3) ... 310s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 310s Setting up libspatialite8t64:amd64 (5.1.0-3build1) ... 310s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 310s Setting up python3-shapely (2.0.4-1) ... 310s Setting up libnetcdf19t64:amd64 (1:4.9.2-6) ... 310s Setting up python3-scipy (1.11.4-10) ... 313s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 313s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-1) ... 313s Setting up libkmlengine1t64:amd64 (1.3.0-12build1) ... 313s Setting up python3-pyproj (3.6.1-4) ... 313s Setting up python3-pandas (2.1.4+dfsg-8) ... 318s Setting up python3-sklearn (1.4.2+dfsg-1) ... 321s Setting up libgdal35:amd64 (3.9.0+dfsg-1) ... 321s Setting up python3-fiona (1.9.6-1build1) ... 321s Setting up python3-geopandas (0.14.4-1) ... 321s Setting up python3-libpysal (4.10-7) ... 321s Setting up python3-esda (2.5.1-3) ... 322s Setting up autopkgtest-satdep (0) ... 322s Processing triggers for man-db (2.12.1-1) ... 322s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 326s (Reading database ... 81353 files and directories currently installed.) 326s Removing autopkgtest-satdep (0) ... 327s autopkgtest [00:24:22]: test command1: python3 -m pytest -v -k 'not test_map_comparison.py and not test_topo.py and not test_smoothing.py and not test_geary.py and not test_local_geary_mv.py and not test_util.py and not test_losh.py and not test_lee.py and not test_local_geary.py and not test_moran.py and not test_smaup.py' esda/tests/ 327s autopkgtest [00:24:22]: test command1: [----------------------- 327s ============================= test session starts ============================== 327s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 -- /usr/bin/python3 327s cachedir: .pytest_cache 327s rootdir: /tmp/autopkgtest.LVkY3x/build.QCr/src 327s configfile: pyproject.toml 329s collecting ... collected 115 items / 79 deselected / 1 skipped / 36 selected 329s 329s esda/tests/test_adbscan.py::ADBSCAN_Tester::test_adbscan PASSED [ 2%] 329s esda/tests/test_adbscan.py::Remap_lbls_Tester::test_remap_lbls PASSED [ 5%] 329s esda/tests/test_adbscan.py::Ensemble_Tester::test_ensemble PASSED [ 8%] 329s esda/tests/test_adbscan.py::Get_Cluster_Boundary_Tester::test_get_cluster_boundary PASSED [ 11%] 329s esda/tests/test_adbscan.py::i::test_ensemble PASSED [ 13%] 329s esda/tests/test_gamma.py::Gamma_Tester::test_Gamma PASSED [ 16%] 329s esda/tests/test_gamma.py::Gamma_Tester::test_by_col PASSED [ 19%] 330s esda/tests/test_gamma.py::i::test_Gamma PASSED [ 22%] 330s esda/tests/test_gamma.py::i::test_by_col PASSED [ 25%] 330s esda/tests/test_getisord.py::G_Tester::test_G PASSED [ 27%] 330s esda/tests/test_getisord.py::G_Tester::test_by_col PASSED [ 30%] 331s esda/tests/test_getisord.py::G_Local_Tester::test_G_Local_Binary PASSED [ 33%] 331s esda/tests/test_getisord.py::G_Local_Tester::test_G_Local_Row_Standardized PASSED [ 36%] 331s esda/tests/test_getisord.py::G_Local_Tester::test_G_star_Local_Binary PASSED [ 38%] 331s esda/tests/test_getisord.py::G_Local_Tester::test_G_star_Row_Standardized PASSED [ 41%] 331s esda/tests/test_getisord.py::G_Local_Tester::test_by_col PASSED [ 44%] 331s esda/tests/test_getisord.py::i::test_G_Local_Binary PASSED [ 47%] 331s esda/tests/test_getisord.py::i::test_G_Local_Row_Standardized PASSED [ 50%] 331s esda/tests/test_getisord.py::i::test_G_star_Local_Binary PASSED [ 52%] 331s esda/tests/test_getisord.py::i::test_G_star_Row_Standardized PASSED [ 55%] 331s esda/tests/test_getisord.py::i::test_by_col PASSED [ 58%] 332s esda/tests/test_join_counts.py::Join_Counts_Tester::test_Join_Counts PASSED [ 61%] 334s esda/tests/test_join_counts.py::Join_Counts_Tester::test_by_col PASSED [ 63%] 334s esda/tests/test_join_counts.py::i::test_Join_Counts PASSED [ 66%] 336s esda/tests/test_join_counts.py::i::test_by_col PASSED [ 69%] 336s esda/tests/test_ljc.py::Join_Counts_Locals_Tester::test_Join_Counts_Locals PASSED [ 72%] 336s esda/tests/test_ljc.py::i::test_Join_Counts_Locals PASSED [ 75%] 336s esda/tests/test_ljc_bv.py::Local_Join_Counts_BV_Tester::test_Local_Join_Counts_BV PASSED [ 77%] 336s esda/tests/test_ljc_bv.py::i::test_Local_Join_Counts_BV PASSED [ 80%] 336s esda/tests/test_ljc_mv.py::Local_Join_Counts_MV_Tester::test_Local_Join_Counts_MV PASSED [ 83%] 336s esda/tests/test_ljc_mv.py::i::test_Local_Join_Counts_MV PASSED [ 86%] 336s esda/tests/test_mixture_smoothing.py::MS_Tester::test_NP_Mixture_Smoother PASSED [ 88%] 336s esda/tests/test_silhouette.py::Silhouette_Tester::test_boundary PASSED [ 91%] 336s esda/tests/test_silhouette.py::Silhouette_Tester::test_nearest_label PASSED [ 94%] 336s esda/tests/test_silhouette.py::Silhouette_Tester::test_path PASSED [ 97%] 336s esda/tests/test_silhouette.py::Silhouette_Tester::test_silhouette_alist PASSED [100%] 336s 336s =============================== warnings summary =============================== 336s esda/tests/test_adbscan.py::ADBSCAN_Tester::test_adbscan 336s /tmp/autopkgtest.LVkY3x/build.QCr/src/esda/adbscan.py:189: UserWarning: Multi-core implementation only works on relabelling solutions. Execution of draws is still sequential. 336s warnings.warn( 336s 336s esda/tests/test_adbscan.py::ADBSCAN_Tester::test_adbscan 336s esda/tests/test_adbscan.py::ADBSCAN_Tester::test_adbscan 336s esda/tests/test_adbscan.py::Remap_lbls_Tester::test_remap_lbls 336s esda/tests/test_adbscan.py::Remap_lbls_Tester::test_remap_lbls 336s esda/tests/test_adbscan.py::Get_Cluster_Boundary_Tester::test_get_cluster_boundary 336s esda/tests/test_adbscan.py::Get_Cluster_Boundary_Tester::test_get_cluster_boundary 336s /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=3092) is multi-threaded, use of fork() may lead to deadlocks in the child. 336s self.pid = os.fork() 336s 336s esda/tests/test_adbscan.py::Get_Cluster_Boundary_Tester::test_get_cluster_boundary 336s /tmp/autopkgtest.LVkY3x/build.QCr/src/esda/adbscan.py:535: UserWarning: Numba not imported, so alpha shape construction may be slower than expected. 336s return alpha_shape_auto(pts_s[0], step=pts_s[1]) 336s 336s esda/tests/test_adbscan.py::Get_Cluster_Boundary_Tester::test_get_cluster_boundary 336s esda/tests/test_adbscan.py::Get_Cluster_Boundary_Tester::test_get_cluster_boundary 336s /usr/lib/python3/dist-packages/geopandas/geoseries.py:648: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 336s val = getattr(super(), mtd)(*args, **kwargs) 336s 336s esda/tests/test_gamma.py::Gamma_Tester::test_by_col 336s esda/tests/test_gamma.py::Gamma_Tester::test_by_col 336s esda/tests/test_gamma.py::i::test_by_col 336s esda/tests/test_gamma.py::i::test_by_col 336s /tmp/autopkgtest.LVkY3x/build.QCr/src/esda/gamma.py:260: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 336s warnings.warn(msg, FutureWarning) 336s 336s esda/tests/test_getisord.py::G_Tester::test_by_col 336s /tmp/autopkgtest.LVkY3x/build.QCr/src/esda/getisord.py:228: FutureWarning: The `.by_cols()` methods are deprecated and will be removed in a future version of `esda`. 336s warnings.warn(msg, FutureWarning) 336s 336s esda/tests/test_getisord.py::G_Local_Tester::test_G_Local_Binary 336s esda/tests/test_getisord.py::G_Local_Tester::test_G_Local_Binary 336s esda/tests/test_getisord.py::G_Local_Tester::test_G_Local_Binary 336s /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=3092) is multi-threaded, use of fork() may lead to deadlocks in the child. 336s pid = os.fork() 336s 336s esda/tests/test_getisord.py::G_Local_Tester::test_by_col 336s esda/tests/test_getisord.py::i::test_by_col 336s /tmp/autopkgtest.LVkY3x/build.QCr/src/esda/getisord.py:569: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 336s warnings.warn(msg, FutureWarning) 336s 336s esda/tests/test_join_counts.py::Join_Counts_Tester::test_by_col 336s esda/tests/test_join_counts.py::i::test_by_col 336s /tmp/autopkgtest.LVkY3x/build.QCr/src/esda/join_counts.py:298: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 336s warnings.warn(msg, FutureWarning) 336s 336s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 336s ========== 36 passed, 1 skipped, 79 deselected, 22 warnings in 9.37s =========== 337s autopkgtest [00:24:32]: test command1: -----------------------] 338s autopkgtest [00:24:33]: test command1: - - - - - - - - - - results - - - - - - - - - - 338s command1 PASS 338s autopkgtest [00:24:33]: @@@@@@@@@@@@@@@@@@@@ summary 338s command1 PASS 348s nova [W] Skipping flock for amd64 348s Creating nova instance adt-oracular-amd64-esda-20240608-001855-juju-7f2275-prod-proposed-migration-environment-3-483f98b9-2d10-4cba-8827-5d1ee1fdfaac from image adt/ubuntu-oracular-amd64-server-20240607.img (UUID d996b44c-1e10-4875-aeab-5b4c434d75a2)...