0s autopkgtest [17:43:22]: starting date and time: 2024-05-04 17:43:22+0000 0s autopkgtest [17:43:22]: git checkout: 699e7f9f ssh-setup/nova: explicitely set 'fqdn' in cloud-init 0s autopkgtest [17:43:22]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8li78xd4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cwlformat,src:monty,src:ruamel.yaml.clib,src:ruamel.yaml --apt-upgrade cwl-utils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cwlformat/2022.02.18-3 monty/2024.4.17-1 ruamel.yaml.clib/0.2.8+ds-1 ruamel.yaml/0.18.6+ds-3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-81.secgroup --name adt-oracular-amd64-cwl-utils-20240504-174321-juju-7f2275-prod-proposed-migration-environment-3-c6971b40-d8d9-4ca4-91ff-55c9b3dc096b --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 1121s autopkgtest [18:02:03]: testbed dpkg architecture: amd64 1121s autopkgtest [18:02:03]: testbed apt version: 2.7.14build2 1121s autopkgtest [18:02:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1121s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [64.7 kB] 1121s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [1762 kB] 1122s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [2800 B] 1122s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [141 kB] 1122s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [23.5 kB] 1122s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [173 kB] 1122s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [218 kB] 1122s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [8572 B] 1122s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [1260 B] 1122s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [691 kB] 1122s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [1373 kB] 1122s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [52.6 kB] 1122s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [16.0 kB] 1122s Fetched 4528 kB in 1s (6885 kB/s) 1122s Reading package lists... 1124s Reading package lists... 1124s Building dependency tree... 1124s Reading state information... 1124s Calculating upgrade... 1124s The following packages will be upgraded: 1124s cloud-init hwdata libaio1t64 pci.ids 1124s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1124s Need to get 918 kB of archives. 1124s After this operation, 69.6 kB of additional disk space will be used. 1124s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 pci.ids all 0.0~2024.04.20-1 [276 kB] 1124s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 hwdata all 0.380-1 [29.2 kB] 1124s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libaio1t64 amd64 0.3.113-8 [7322 B] 1124s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 cloud-init all 24.2~2g51c6569f-0ubuntu1 [606 kB] 1125s Preconfiguring packages ... 1125s Fetched 918 kB in 0s (22.0 MB/s) 1125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73888 files and directories currently installed.) 1125s Preparing to unpack .../pci.ids_0.0~2024.04.20-1_all.deb ... 1125s Unpacking pci.ids (0.0~2024.04.20-1) over (0.0~2024.03.31-1) ... 1125s Preparing to unpack .../hwdata_0.380-1_all.deb ... 1125s Unpacking hwdata (0.380-1) over (0.379-1) ... 1125s Preparing to unpack .../libaio1t64_0.3.113-8_amd64.deb ... 1125s Unpacking libaio1t64:amd64 (0.3.113-8) over (0.3.113-6build1) ... 1125s Preparing to unpack .../cloud-init_24.2~2g51c6569f-0ubuntu1_all.deb ... 1125s Unpacking cloud-init (24.2~2g51c6569f-0ubuntu1) over (24.1.3-0ubuntu3) ... 1126s Setting up pci.ids (0.0~2024.04.20-1) ... 1126s Setting up cloud-init (24.2~2g51c6569f-0ubuntu1) ... 1126s Installing new version of config file /etc/cloud/templates/sources.list.ubuntu.deb822.tmpl ... 1127s Setting up hwdata (0.380-1) ... 1127s Setting up libaio1t64:amd64 (0.3.113-8) ... 1127s Processing triggers for rsyslog (8.2312.0-3ubuntu9) ... 1127s Processing triggers for man-db (2.12.0-4build2) ... 1128s Processing triggers for libc-bin (2.39-0ubuntu8) ... 1128s Reading package lists... 1128s Building dependency tree... 1128s Reading state information... 1129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1129s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 1129s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 1129s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 1129s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 1130s Reading package lists... 1130s Reading package lists... 1130s Building dependency tree... 1130s Reading state information... 1131s Calculating upgrade... 1131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1131s Reading package lists... 1131s Building dependency tree... 1131s Reading state information... 1131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1131s autopkgtest [18:02:13]: rebooting testbed after setup commands that affected boot 1135s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1146s autopkgtest [18:02:28]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 1147s autopkgtest [18:02:29]: @@@@@@@@@@@@@@@@@@@@ apt-source cwl-utils 1148s Get:1 http://ftpmaster.internal/ubuntu oracular/universe cwl-utils 0.32-1 (dsc) [2459 B] 1148s Get:2 http://ftpmaster.internal/ubuntu oracular/universe cwl-utils 0.32-1 (tar) [304 kB] 1148s Get:3 http://ftpmaster.internal/ubuntu oracular/universe cwl-utils 0.32-1 (diff) [3584 B] 1148s gpgv: Signature made Tue Jan 23 11:29:08 2024 UTC 1148s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 1148s gpgv: Can't check signature: No public key 1148s dpkg-source: warning: cannot verify inline signature for ./cwl-utils_0.32-1.dsc: no acceptable signature found 1148s autopkgtest [18:02:30]: testing package cwl-utils version 0.32-1 1148s autopkgtest [18:02:30]: build not needed 1148s autopkgtest [18:02:30]: test run-tests: preparing testbed 1148s Reading package lists... 1149s Building dependency tree... 1149s Reading state information... 1149s Starting pkgProblemResolver with broken count: 0 1149s Starting 2 pkgProblemResolver with broken count: 0 1149s Done 1149s The following additional packages will be installed: 1149s cwl-upgrader cwl-utils cwlformat fonts-glyphicons-halflings libcares2 1149s libjs-bootstrap libnode109 node-acorn node-cjs-module-lexer node-undici 1149s node-xtend nodejs python3-cachecontrol python3-cwl-utils python3-execnet 1149s python3-filelock python3-iniconfig python3-isodate python3-mistune 1149s python3-mock python3-msgpack python3-mypy-extensions python3-packaging 1149s python3-pluggy python3-pytest python3-pytest-mock python3-pytest-xdist 1149s python3-rdflib python3-ruamel.yaml python3-ruamel.yaml.clib 1149s python3-schema-salad 1149s Suggested packages: 1149s cwltool npm execnet-doc python-mock-doc python-pytest-mock-doc 1149s python-rdflib-doc 1149s Recommended packages: 1149s nodejs-doc python3-sparqlwrapper python3-html5lib cwltool black 1149s The following NEW packages will be installed: 1149s autopkgtest-satdep cwl-upgrader cwl-utils cwlformat 1149s fonts-glyphicons-halflings libcares2 libjs-bootstrap libnode109 node-acorn 1149s node-cjs-module-lexer node-undici node-xtend nodejs python3-cachecontrol 1149s python3-cwl-utils python3-execnet python3-filelock python3-iniconfig 1149s python3-isodate python3-mistune python3-mock python3-msgpack 1149s python3-mypy-extensions python3-packaging python3-pluggy python3-pytest 1149s python3-pytest-mock python3-pytest-xdist python3-rdflib python3-ruamel.yaml 1149s python3-ruamel.yaml.clib python3-schema-salad 1149s 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. 1149s Need to get 15.3 MB/15.3 MB of archives. 1149s After this operation, 72.7 MB of additional disk space will be used. 1149s Get:1 /tmp/autopkgtest.oL8aJY/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [748 B] 1149s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-1 [133 kB] 1149s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 1149s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-msgpack amd64 1.0.3-3build2 [80.1 kB] 1149s Get:5 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cachecontrol all 0.14.0-1 [19.0 kB] 1149s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mistune all 3.0.2-1 [32.8 kB] 1149s Get:7 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mypy-extensions all 1.0.0-1 [6148 B] 1149s Get:8 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-isodate all 0.6.1-2 [24.3 kB] 1149s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-rdflib all 6.1.1-3 [362 kB] 1149s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-filelock all 3.13.1-1 [10.8 kB] 1149s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1149s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1149s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-schema-salad amd64 8.5.20240102191335-1build1 [1039 kB] 1149s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 cwl-upgrader all 1.2.11-1 [16.0 kB] 1149s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 1149s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cwl-utils all 0.32-1 [118 kB] 1149s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 cwl-utils all 0.32-1 [2824 B] 1149s Get:18 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 cwlformat all 2022.02.18-3 [7622 B] 1149s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libcares2 amd64 1.27.0-1.0ubuntu1 [73.7 kB] 1149s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-xtend all 4.0.2-3 [3902 B] 1149s Get:21 http://ftpmaster.internal/ubuntu oracular/universe amd64 nodejs amd64 18.19.1+dfsg-6ubuntu5 [306 kB] 1149s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-acorn all 8.8.1+ds+~cs25.17.7-2 [115 kB] 1150s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-cjs-module-lexer all 1.2.3+dfsg-1 [32.1 kB] 1150s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-undici all 5.28.2+dfsg1+~cs23.11.12.3-6ubuntu2 [335 kB] 1150s Get:25 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnode109 amd64 18.19.1+dfsg-6ubuntu5 [11.6 MB] 1150s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-execnet all 2.0.0-2 [33.6 kB] 1150s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 1150s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.4.0-1 [20.4 kB] 1150s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 1150s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest-mock all 3.12.0-1.1 [11.3 kB] 1150s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest-xdist all 3.4.0-1 [32.0 kB] 1150s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mock all 5.1.0-1 [64.1 kB] 1150s Fetched 15.3 MB in 0s (96.3 MB/s) 1150s Selecting previously unselected package python3-ruamel.yaml.clib:amd64. 1150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73895 files and directories currently installed.) 1150s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8+ds-1_amd64.deb ... 1150s Unpacking python3-ruamel.yaml.clib:amd64 (0.2.8+ds-1) ... 1150s Selecting previously unselected package python3-ruamel.yaml. 1150s Preparing to unpack .../01-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 1150s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 1150s Selecting previously unselected package python3-msgpack. 1150s Preparing to unpack .../02-python3-msgpack_1.0.3-3build2_amd64.deb ... 1150s Unpacking python3-msgpack (1.0.3-3build2) ... 1150s Selecting previously unselected package python3-cachecontrol. 1150s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 1150s Unpacking python3-cachecontrol (0.14.0-1) ... 1150s Selecting previously unselected package python3-mistune. 1150s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 1150s Unpacking python3-mistune (3.0.2-1) ... 1150s Selecting previously unselected package python3-mypy-extensions. 1150s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 1150s Unpacking python3-mypy-extensions (1.0.0-1) ... 1151s Selecting previously unselected package python3-isodate. 1151s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 1151s Unpacking python3-isodate (0.6.1-2) ... 1151s Selecting previously unselected package python3-rdflib. 1151s Preparing to unpack .../07-python3-rdflib_6.1.1-3_all.deb ... 1151s Unpacking python3-rdflib (6.1.1-3) ... 1151s Selecting previously unselected package python3-filelock. 1151s Preparing to unpack .../08-python3-filelock_3.13.1-1_all.deb ... 1151s Unpacking python3-filelock (3.13.1-1) ... 1151s Selecting previously unselected package fonts-glyphicons-halflings. 1151s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1151s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1151s Selecting previously unselected package libjs-bootstrap. 1151s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 1151s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 1151s Selecting previously unselected package python3-schema-salad. 1151s Preparing to unpack .../11-python3-schema-salad_8.5.20240102191335-1build1_amd64.deb ... 1151s Unpacking python3-schema-salad (8.5.20240102191335-1build1) ... 1151s Selecting previously unselected package cwl-upgrader. 1151s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 1151s Unpacking cwl-upgrader (1.2.11-1) ... 1151s Selecting previously unselected package python3-packaging. 1151s Preparing to unpack .../13-python3-packaging_24.0-1_all.deb ... 1151s Unpacking python3-packaging (24.0-1) ... 1151s Selecting previously unselected package python3-cwl-utils. 1151s Preparing to unpack .../14-python3-cwl-utils_0.32-1_all.deb ... 1151s Unpacking python3-cwl-utils (0.32-1) ... 1151s Selecting previously unselected package cwl-utils. 1151s Preparing to unpack .../15-cwl-utils_0.32-1_all.deb ... 1151s Unpacking cwl-utils (0.32-1) ... 1151s Selecting previously unselected package cwlformat. 1151s Preparing to unpack .../16-cwlformat_2022.02.18-3_all.deb ... 1151s Unpacking cwlformat (2022.02.18-3) ... 1151s Selecting previously unselected package libcares2:amd64. 1151s Preparing to unpack .../17-libcares2_1.27.0-1.0ubuntu1_amd64.deb ... 1151s Unpacking libcares2:amd64 (1.27.0-1.0ubuntu1) ... 1151s Selecting previously unselected package node-xtend. 1151s Preparing to unpack .../18-node-xtend_4.0.2-3_all.deb ... 1151s Unpacking node-xtend (4.0.2-3) ... 1151s Selecting previously unselected package nodejs. 1151s Preparing to unpack .../19-nodejs_18.19.1+dfsg-6ubuntu5_amd64.deb ... 1151s Unpacking nodejs (18.19.1+dfsg-6ubuntu5) ... 1151s Selecting previously unselected package node-acorn. 1151s Preparing to unpack .../20-node-acorn_8.8.1+ds+~cs25.17.7-2_all.deb ... 1151s Unpacking node-acorn (8.8.1+ds+~cs25.17.7-2) ... 1151s Selecting previously unselected package node-cjs-module-lexer. 1151s Preparing to unpack .../21-node-cjs-module-lexer_1.2.3+dfsg-1_all.deb ... 1151s Unpacking node-cjs-module-lexer (1.2.3+dfsg-1) ... 1151s Selecting previously unselected package node-undici. 1151s Preparing to unpack .../22-node-undici_5.28.2+dfsg1+~cs23.11.12.3-6ubuntu2_all.deb ... 1151s Unpacking node-undici (5.28.2+dfsg1+~cs23.11.12.3-6ubuntu2) ... 1151s Selecting previously unselected package libnode109:amd64. 1151s Preparing to unpack .../23-libnode109_18.19.1+dfsg-6ubuntu5_amd64.deb ... 1151s Unpacking libnode109:amd64 (18.19.1+dfsg-6ubuntu5) ... 1151s Selecting previously unselected package python3-execnet. 1151s Preparing to unpack .../24-python3-execnet_2.0.0-2_all.deb ... 1151s Unpacking python3-execnet (2.0.0-2) ... 1152s Selecting previously unselected package python3-iniconfig. 1152s Preparing to unpack .../25-python3-iniconfig_1.1.1-2_all.deb ... 1152s Unpacking python3-iniconfig (1.1.1-2) ... 1152s Selecting previously unselected package python3-pluggy. 1152s Preparing to unpack .../26-python3-pluggy_1.4.0-1_all.deb ... 1152s Unpacking python3-pluggy (1.4.0-1) ... 1152s Selecting previously unselected package python3-pytest. 1152s Preparing to unpack .../27-python3-pytest_7.4.4-1_all.deb ... 1152s Unpacking python3-pytest (7.4.4-1) ... 1152s Selecting previously unselected package python3-pytest-mock. 1152s Preparing to unpack .../28-python3-pytest-mock_3.12.0-1.1_all.deb ... 1152s Unpacking python3-pytest-mock (3.12.0-1.1) ... 1152s Selecting previously unselected package python3-pytest-xdist. 1152s Preparing to unpack .../29-python3-pytest-xdist_3.4.0-1_all.deb ... 1152s Unpacking python3-pytest-xdist (3.4.0-1) ... 1152s Selecting previously unselected package python3-mock. 1152s Preparing to unpack .../30-python3-mock_5.1.0-1_all.deb ... 1152s Unpacking python3-mock (5.1.0-1) ... 1152s Selecting previously unselected package autopkgtest-satdep. 1152s Preparing to unpack .../31-1-autopkgtest-satdep.deb ... 1152s Unpacking autopkgtest-satdep (0) ... 1152s Setting up python3-iniconfig (1.1.1-2) ... 1152s Setting up python3-filelock (3.13.1-1) ... 1152s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1152s Setting up python3-mypy-extensions (1.0.0-1) ... 1152s Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-1) ... 1152s Setting up node-cjs-module-lexer (1.2.3+dfsg-1) ... 1152s Setting up python3-mock (5.1.0-1) ... 1152s Setting up python3-isodate (0.6.1-2) ... 1153s Setting up python3-packaging (24.0-1) ... 1153s Setting up libcares2:amd64 (1.27.0-1.0ubuntu1) ... 1153s Setting up python3-pluggy (1.4.0-1) ... 1153s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 1153s Setting up node-undici (5.28.2+dfsg1+~cs23.11.12.3-6ubuntu2) ... 1153s Setting up python3-rdflib (6.1.1-3) ... 1153s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' 1153s """Converts the given graph into a networkx.MultiDiGraph. 1153s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' 1153s """Converts the given graph into a networkx.DiGraph. 1153s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' 1153s """Converts the given graph into a networkx.Graph. 1153s Setting up python3-msgpack (1.0.3-3build2) ... 1153s Setting up python3-cachecontrol (0.14.0-1) ... 1154s Setting up node-xtend (4.0.2-3) ... 1154s Setting up python3-execnet (2.0.0-2) ... 1154s Setting up python3-mistune (3.0.2-1) ... 1154s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 1154s Setting up python3-pytest (7.4.4-1) ... 1154s Setting up python3-schema-salad (8.5.20240102191335-1build1) ... 1154s Setting up cwlformat (2022.02.18-3) ... 1155s Setting up cwl-upgrader (1.2.11-1) ... 1155s Setting up python3-pytest-mock (3.12.0-1.1) ... 1155s Setting up python3-pytest-xdist (3.4.0-1) ... 1155s Setting up python3-cwl-utils (0.32-1) ... 1156s Setting up cwl-utils (0.32-1) ... 1156s Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... 1156s Setting up libnode109:amd64 (18.19.1+dfsg-6ubuntu5) ... 1156s Setting up nodejs (18.19.1+dfsg-6ubuntu5) ... 1156s update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode 1156s Setting up autopkgtest-satdep (0) ... 1156s Processing triggers for libc-bin (2.39-0ubuntu8) ... 1156s Processing triggers for man-db (2.12.0-4build2) ... 1159s (Reading database ... 75780 files and directories currently installed.) 1159s Removing autopkgtest-satdep (0) ... 1159s autopkgtest [18:02:41]: test run-tests: [----------------------- 1159s + pkg=cwl-utils 1159s + [ /tmp/autopkgtest.oL8aJY/autopkgtest_tmp = ] 1159s + cd /tmp/autopkgtest.oL8aJY/autopkgtest_tmp 1159s + py.test-3 -rs --numprocesses=auto --pyargs cwl_utils 1160s ============================= test session starts ============================== 1160s platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.4.0 1160s rootdir: /tmp/autopkgtest.oL8aJY/autopkgtest_tmp 1160s plugins: mock-3.12.0, xdist-3.4.0 1160s created: 2/2 workers 1160s 2 workers [184 items] 1160s 1162s .....sss.ssssssssssss................................s................ss [ 39%] 1164s s....................................................................... [ 78%] 1164s ........................................ [100%] 1164s =============================== warnings summary =============================== 1164s ../../../usr/lib/python3/dist-packages/cwl_utils/tests/util.py:6 1164s ../../../usr/lib/python3/dist-packages/cwl_utils/tests/util.py:6 1164s /usr/lib/python3/dist-packages/cwl_utils/tests/util.py:6: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1164s from pkg_resources import Requirement, ResolutionError, resource_filename 1164s 1164s ../../../usr/lib/python3/dist-packages/cwlformat/formatter.py:23 1164s ../../../usr/lib/python3/dist-packages/cwlformat/formatter.py:23 1164s /usr/lib/python3/dist-packages/cwlformat/formatter.py:23: DeprecationWarning: read_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. 1164s key_order_dict = yaml.load(read_text("cwlformat", "keyorder.yml")) 1164s 1164s ../../../usr/lib/python3.12/importlib/resources/_legacy.py:79 1164s ../../../usr/lib/python3.12/importlib/resources/_legacy.py:79 1164s /usr/lib/python3.12/importlib/resources/_legacy.py:79: DeprecationWarning: open_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. 1164s with open_text(package, resource, encoding, errors) as fp: 1164s 1164s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1164s =========================== short test summary info ============================ 1164s SKIPPED [2] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:12: Requires the docker executable on the system path. 1164s SKIPPED [2] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:12: Requires the podman executable on the system path. 1164s SKIPPED [2] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:12: Requires the singularity executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:34: Requires the docker executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:34: Requires the podman executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:34: Requires the singularity executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:72: Requires the docker executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:72: Requires the podman executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:72: Requires the singularity executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:107: Requires the docker executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:107: Requires the podman executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:107: Requires the singularity executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:156: Requires the singularity executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:78: Requires the podman executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:104: Requires the udocker executable on the system path. 1164s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:130: Requires the singularity executable on the system path. 1164s ================= 165 passed, 19 skipped, 6 warnings in 4.63s ================== 1164s autopkgtest [18:02:46]: test run-tests: -----------------------] 1165s autopkgtest [18:02:47]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 1165s run-tests PASS 1165s autopkgtest [18:02:47]: test command1: preparing testbed 2105s autopkgtest [18:18:27]: testbed dpkg architecture: amd64 2105s autopkgtest [18:18:27]: testbed apt version: 2.7.14build2 2105s autopkgtest [18:18:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 2105s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [64.7 kB] 2105s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [141 kB] 2105s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [1762 kB] 2106s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [2800 B] 2106s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [23.5 kB] 2106s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [218 kB] 2106s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [173 kB] 2106s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [8572 B] 2106s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [1260 B] 2106s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [691 kB] 2106s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [1373 kB] 2106s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [16.0 kB] 2106s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [52.6 kB] 2106s Fetched 4528 kB in 1s (7427 kB/s) 2106s Reading package lists... 2108s Reading package lists... 2108s Building dependency tree... 2108s Reading state information... 2108s Calculating upgrade... 2108s The following packages will be upgraded: 2108s cloud-init hwdata libaio1t64 pci.ids 2108s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2108s Need to get 918 kB of archives. 2108s After this operation, 69.6 kB of additional disk space will be used. 2108s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 pci.ids all 0.0~2024.04.20-1 [276 kB] 2108s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 hwdata all 0.380-1 [29.2 kB] 2108s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libaio1t64 amd64 0.3.113-8 [7322 B] 2108s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 cloud-init all 24.2~2g51c6569f-0ubuntu1 [606 kB] 2109s Preconfiguring packages ... 2109s Fetched 918 kB in 0s (27.4 MB/s) 2109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73888 files and directories currently installed.) 2109s Preparing to unpack .../pci.ids_0.0~2024.04.20-1_all.deb ... 2109s Unpacking pci.ids (0.0~2024.04.20-1) over (0.0~2024.03.31-1) ... 2109s Preparing to unpack .../hwdata_0.380-1_all.deb ... 2109s Unpacking hwdata (0.380-1) over (0.379-1) ... 2109s Preparing to unpack .../libaio1t64_0.3.113-8_amd64.deb ... 2109s Unpacking libaio1t64:amd64 (0.3.113-8) over (0.3.113-6build1) ... 2109s Preparing to unpack .../cloud-init_24.2~2g51c6569f-0ubuntu1_all.deb ... 2109s Unpacking cloud-init (24.2~2g51c6569f-0ubuntu1) over (24.1.3-0ubuntu3) ... 2110s Setting up pci.ids (0.0~2024.04.20-1) ... 2110s Setting up cloud-init (24.2~2g51c6569f-0ubuntu1) ... 2110s Installing new version of config file /etc/cloud/templates/sources.list.ubuntu.deb822.tmpl ... 2111s Setting up hwdata (0.380-1) ... 2111s Setting up libaio1t64:amd64 (0.3.113-8) ... 2111s Processing triggers for rsyslog (8.2312.0-3ubuntu9) ... 2111s Processing triggers for man-db (2.12.0-4build2) ... 2112s Processing triggers for libc-bin (2.39-0ubuntu8) ... 2112s Reading package lists... 2112s Building dependency tree... 2112s Reading state information... 2112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2113s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 2113s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 2113s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 2113s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 2114s Reading package lists... 2114s Reading package lists... 2114s Building dependency tree... 2114s Reading state information... 2114s Calculating upgrade... 2115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2115s Reading package lists... 2115s Building dependency tree... 2115s Reading state information... 2115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2115s autopkgtest [18:18:37]: rebooting testbed after setup commands that affected boot 2119s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 2132s Reading package lists... 2132s Building dependency tree... 2132s Reading state information... 2132s Starting pkgProblemResolver with broken count: 0 2132s Starting 2 pkgProblemResolver with broken count: 0 2132s Done 2133s The following additional packages will be installed: 2133s cwl-upgrader cwl-utils fonts-glyphicons-halflings libjs-bootstrap 2133s python3-cachecontrol python3-cwl-utils python3-filelock python3-isodate 2133s python3-mistune python3-msgpack python3-mypy-extensions python3-packaging 2133s python3-rdflib python3-ruamel.yaml python3-ruamel.yaml.clib 2133s python3-schema-salad 2133s Suggested packages: 2133s cwltool cwlformat python-rdflib-doc 2133s Recommended packages: 2133s python3-sparqlwrapper python3-html5lib cwltool black 2133s The following NEW packages will be installed: 2133s autopkgtest-satdep cwl-upgrader cwl-utils fonts-glyphicons-halflings 2133s libjs-bootstrap python3-cachecontrol python3-cwl-utils python3-filelock 2133s python3-isodate python3-mistune python3-msgpack python3-mypy-extensions 2133s python3-packaging python3-rdflib python3-ruamel.yaml 2133s python3-ruamel.yaml.clib python3-schema-salad 2133s 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 2133s Need to get 2258 kB/2259 kB of archives. 2133s After this operation, 15.7 MB of additional disk space will be used. 2133s Get:1 /tmp/autopkgtest.oL8aJY/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 2133s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-1 [133 kB] 2133s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 2133s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-msgpack amd64 1.0.3-3build2 [80.1 kB] 2133s Get:5 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cachecontrol all 0.14.0-1 [19.0 kB] 2133s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mistune all 3.0.2-1 [32.8 kB] 2133s Get:7 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mypy-extensions all 1.0.0-1 [6148 B] 2133s Get:8 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-isodate all 0.6.1-2 [24.3 kB] 2133s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-rdflib all 6.1.1-3 [362 kB] 2133s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-filelock all 3.13.1-1 [10.8 kB] 2133s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 2133s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 2133s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-schema-salad amd64 8.5.20240102191335-1build1 [1039 kB] 2133s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 cwl-upgrader all 1.2.11-1 [16.0 kB] 2133s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 2133s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cwl-utils all 0.32-1 [118 kB] 2133s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 cwl-utils all 0.32-1 [2824 B] 2133s Fetched 2258 kB in 0s (34.6 MB/s) 2133s Selecting previously unselected package python3-ruamel.yaml.clib:amd64. 2133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73895 files and directories currently installed.) 2133s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8+ds-1_amd64.deb ... 2133s Unpacking python3-ruamel.yaml.clib:amd64 (0.2.8+ds-1) ... 2133s Selecting previously unselected package python3-ruamel.yaml. 2133s Preparing to unpack .../01-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 2133s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 2134s Selecting previously unselected package python3-msgpack. 2134s Preparing to unpack .../02-python3-msgpack_1.0.3-3build2_amd64.deb ... 2134s Unpacking python3-msgpack (1.0.3-3build2) ... 2134s Selecting previously unselected package python3-cachecontrol. 2134s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 2134s Unpacking python3-cachecontrol (0.14.0-1) ... 2134s Selecting previously unselected package python3-mistune. 2134s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 2134s Unpacking python3-mistune (3.0.2-1) ... 2134s Selecting previously unselected package python3-mypy-extensions. 2134s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 2134s Unpacking python3-mypy-extensions (1.0.0-1) ... 2134s Selecting previously unselected package python3-isodate. 2134s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 2134s Unpacking python3-isodate (0.6.1-2) ... 2134s Selecting previously unselected package python3-rdflib. 2134s Preparing to unpack .../07-python3-rdflib_6.1.1-3_all.deb ... 2134s Unpacking python3-rdflib (6.1.1-3) ... 2134s Selecting previously unselected package python3-filelock. 2134s Preparing to unpack .../08-python3-filelock_3.13.1-1_all.deb ... 2134s Unpacking python3-filelock (3.13.1-1) ... 2134s Selecting previously unselected package fonts-glyphicons-halflings. 2134s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 2134s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 2134s Selecting previously unselected package libjs-bootstrap. 2134s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 2134s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 2134s Selecting previously unselected package python3-schema-salad. 2134s Preparing to unpack .../11-python3-schema-salad_8.5.20240102191335-1build1_amd64.deb ... 2134s Unpacking python3-schema-salad (8.5.20240102191335-1build1) ... 2134s Selecting previously unselected package cwl-upgrader. 2134s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 2134s Unpacking cwl-upgrader (1.2.11-1) ... 2134s Selecting previously unselected package python3-packaging. 2134s Preparing to unpack .../13-python3-packaging_24.0-1_all.deb ... 2134s Unpacking python3-packaging (24.0-1) ... 2134s Selecting previously unselected package python3-cwl-utils. 2134s Preparing to unpack .../14-python3-cwl-utils_0.32-1_all.deb ... 2134s Unpacking python3-cwl-utils (0.32-1) ... 2134s Selecting previously unselected package cwl-utils. 2134s Preparing to unpack .../15-cwl-utils_0.32-1_all.deb ... 2134s Unpacking cwl-utils (0.32-1) ... 2134s Selecting previously unselected package autopkgtest-satdep. 2134s Preparing to unpack .../16-2-autopkgtest-satdep.deb ... 2134s Unpacking autopkgtest-satdep (0) ... 2134s Setting up python3-filelock (3.13.1-1) ... 2134s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 2134s Setting up python3-mypy-extensions (1.0.0-1) ... 2134s Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-1) ... 2134s Setting up python3-isodate (0.6.1-2) ... 2134s Setting up python3-packaging (24.0-1) ... 2134s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 2135s Setting up python3-rdflib (6.1.1-3) ... 2135s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' 2135s """Converts the given graph into a networkx.MultiDiGraph. 2135s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' 2135s """Converts the given graph into a networkx.DiGraph. 2135s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' 2135s """Converts the given graph into a networkx.Graph. 2135s Setting up python3-msgpack (1.0.3-3build2) ... 2135s Setting up python3-cachecontrol (0.14.0-1) ... 2135s Setting up python3-mistune (3.0.2-1) ... 2135s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 2135s Setting up python3-schema-salad (8.5.20240102191335-1build1) ... 2136s Setting up cwl-upgrader (1.2.11-1) ... 2136s Setting up python3-cwl-utils (0.32-1) ... 2137s Setting up cwl-utils (0.32-1) ... 2137s Setting up autopkgtest-satdep (0) ... 2137s Processing triggers for man-db (2.12.0-4build2) ... 2139s (Reading database ... 74974 files and directories currently installed.) 2139s Removing autopkgtest-satdep (0) ... 2140s autopkgtest [18:19:02]: test command1: cwl-cite-extract --help && cwl-docker-extract --help && cwl-expression-refactor --help && cwl-normalizer --help 2140s autopkgtest [18:19:02]: test command1: [----------------------- 2140s usage: cwl-cite-extract [-h] input 2140s 2140s Print information about software used in a CWL document (Workflow or 2140s CommandLineTool). For CWL Workflows, all steps will also be searched 2140s (recursively). 2140s 2140s positional arguments: 2140s input Input CWL document (CWL Workflow or CWL CommandLineTool) 2140s 2140s options: 2140s -h, --help show this help message and exit 2141s usage: cwl-docker-extract [-h] [--dir DIR] [-s] 2141s [--container-engine CONTAINER_ENGINE] 2141s [--force-download] 2141s input 2141s 2141s Save container images specified in a CWL document (Workflow or 2141s CommandLineTool). For CWL Workflows, all steps will also be searched 2141s (recursively). 2141s 2141s positional arguments: 2141s input Input CWL document (CWL Workflow or CWL 2141s CommandLineTool) 2141s 2141s options: 2141s -h, --help show this help message and exit 2141s --dir DIR Directory in which to save images 2141s -s, --singularity Use singularity to pull the image 2141s --container-engine CONTAINER_ENGINE 2141s Specify which command to use to run OCI containers. 2141s Defaults to 'docker' (or 'singularity' if 2141s --singularity/-s is passed). 2141s --force-download Force pulling a newer container. 2141s usage: cwl-expression-refactor [-h] [--etools] [--skip-some1] [--skip-some2] 2141s dir inputs [inputs ...] 2141s 2141s Tool to refactor CWL documents so that any CWL expression are separate steps 2141s as either ExpressionTools or CommandLineTools. Exit code 7 means a single CWL 2141s document was provided but it did not need modification. 2141s 2141s positional arguments: 2141s dir Directory in which to save converted files 2141s inputs One or more CWL documents. 2141s 2141s options: 2141s -h, --help show this help message and exit 2141s --etools Output ExpressionTools, don't go all the way to 2141s CommandLineTools. 2141s --skip-some1 Don't process CommandLineTool.inputs.inputBinding and 2141s CommandLineTool.arguments sections. 2141s --skip-some2 Don't process CommandLineTool.outputEval or 2141s CommandLineTool.requirements.InitialWorkDirRequirement. 2141s usage: cwl-normalizer [-h] [--etools] [--skip-some1] [--skip-some2] 2141s [--no-expression-refactoring] 2141s dir inputs [inputs ...] 2141s 2141s Normalizes CWL documents. Will upgrade to CWL v1.2, and pack the result. Can 2141s optionally refactor out CWL expressions. 2141s 2141s positional arguments: 2141s dir Directory in which to save converted files 2141s inputs One or more CWL documents. 2141s 2141s options: 2141s -h, --help show this help message and exit 2141s --etools Output ExpressionTools, don't go all the way to 2141s CommandLineTools. 2141s --skip-some1 Don't process CommandLineTool.inputs.inputBinding and 2141s CommandLineTool.arguments sections. 2141s --skip-some2 Don't process CommandLineTool.outputEval or CommandLin 2141s eTool.requirements.InitialWorkDirRequirement. 2141s --no-expression-refactoring 2141s Don't do any CWL expression refactoring. 2142s autopkgtest [18:19:04]: test command1: -----------------------] 2142s autopkgtest [18:19:04]: test command1: - - - - - - - - - - results - - - - - - - - - - 2142s command1 PASS (superficial) 2142s autopkgtest [18:19:04]: test command2: preparing testbed 2143s Reading package lists... 2143s Building dependency tree... 2143s Reading state information... 2143s Starting pkgProblemResolver with broken count: 0 2143s Starting 2 pkgProblemResolver with broken count: 0 2143s Done 2144s The following additional packages will be installed: 2144s cwlformat 2144s The following NEW packages will be installed: 2144s autopkgtest-satdep cwlformat 2144s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 2144s Need to get 7622 B/8334 B of archives. 2144s After this operation, 39.9 kB of additional disk space will be used. 2144s Get:1 /tmp/autopkgtest.oL8aJY/3-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [712 B] 2144s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 cwlformat all 2022.02.18-3 [7622 B] 2144s Fetched 7622 B in 0s (272 kB/s) 2144s Selecting previously unselected package cwlformat. 2144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74974 files and directories currently installed.) 2144s Preparing to unpack .../cwlformat_2022.02.18-3_all.deb ... 2144s Unpacking cwlformat (2022.02.18-3) ... 2144s Selecting previously unselected package autopkgtest-satdep. 2144s Preparing to unpack .../3-autopkgtest-satdep.deb ... 2144s Unpacking autopkgtest-satdep (0) ... 2144s Setting up cwlformat (2022.02.18-3) ... 2144s Setting up autopkgtest-satdep (0) ... 2146s (Reading database ... 74992 files and directories currently installed.) 2146s Removing autopkgtest-satdep (0) ... 2146s autopkgtest [18:19:08]: test command2: cwl-graph-split --help 2146s autopkgtest [18:19:08]: test command2: [----------------------- 2146s usage: cwl-graph-split [-h] [-m MAINFILE] [-f {json,yaml}] [-p] [-C OUTDIR] 2146s cwlfile 2146s 2146s Split a packed CWL document. 2146s 2146s positional arguments: 2146s cwlfile 2146s 2146s options: 2146s -h, --help show this help message and exit 2146s -m MAINFILE, --mainfile MAINFILE 2146s Specify the name of the main document. 2146s -f {json,yaml}, --output-format {json,yaml} 2146s Specify the format of the output CWL files. 2146s -p, --pretty Beautify the output CWL document, only works with yaml 2146s format. 2146s -C OUTDIR, --outdir OUTDIR 2146s Output folder for the unpacked CWL files. 2147s autopkgtest [18:19:09]: test command2: -----------------------] 2147s command2 PASS (superficial) 2147s autopkgtest [18:19:09]: test command2: - - - - - - - - - - results - - - - - - - - - - 2147s autopkgtest [18:19:09]: @@@@@@@@@@@@@@@@@@@@ summary 2147s run-tests PASS 2147s command1 PASS (superficial) 2147s command2 PASS (superficial) 2172s Creating nova instance adt-oracular-amd64-cwl-utils-20240504-174321-juju-7f2275-prod-proposed-migration-environment-3-c6971b40-d8d9-4ca4-91ff-55c9b3dc096b from image adt/ubuntu-oracular-amd64-server-20240503.img (UUID e628c166-7cba-46cd-8ffe-b739924ba328)... 2172s Creating nova instance adt-oracular-amd64-cwl-utils-20240504-174321-juju-7f2275-prod-proposed-migration-environment-3-c6971b40-d8d9-4ca4-91ff-55c9b3dc096b from image adt/ubuntu-oracular-amd64-server-20240503.img (UUID e628c166-7cba-46cd-8ffe-b739924ba328)...