0s autopkgtest [21:54:49]: starting date and time: 2024-07-17 21:54:49+0000 0s autopkgtest [21:54:49]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [21:54:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ks3ogfhx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ruamel.yaml,src:ruamel.yaml.clib --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ruamel.yaml/0.18.6+ds-3 ruamel.yaml.clib/0.2.8+ds-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-34.secgroup --name adt-oracular-amd64-custodian-20240717-215449-juju-7f2275-prod-proposed-migration-environment-2-27e65183-562a-44ad-a402-5c8712658ba8 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 44s autopkgtest [21:55:33]: testbed dpkg architecture: amd64 44s autopkgtest [21:55:33]: testbed apt version: 2.9.6 44s autopkgtest [21:55:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 44s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 44s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [334 kB] 44s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [41.9 kB] 44s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 44s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 44s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [78.5 kB] 44s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [49.8 kB] 44s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 44s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 44s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 44s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 44s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [181 kB] 44s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [325 kB] 44s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 44s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 44s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B] 44s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 45s Fetched 1212 kB in 0s (4947 kB/s) 45s Reading package lists... 47s Reading package lists... 47s Building dependency tree... 47s Reading state information... 48s Calculating upgrade... 48s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 48s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 49s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 50s Reading package lists... 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 51s Calculating upgrade... 51s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s autopkgtest [21:55:41]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 53s autopkgtest [21:55:42]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 54s Get:1 http://ftpmaster.internal/ubuntu oracular/universe custodian 2024.1.9-3 (dsc) [2315 B] 54s Get:2 http://ftpmaster.internal/ubuntu oracular/universe custodian 2024.1.9-3 (tar) [43.5 MB] 54s Get:3 http://ftpmaster.internal/ubuntu oracular/universe custodian 2024.1.9-3 (diff) [8480 B] 54s gpgv: Signature made Tue Feb 13 12:20:26 2024 UTC 54s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 54s gpgv: Can't check signature: No public key 54s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.1.9-3.dsc: no acceptable signature found 56s autopkgtest [21:55:45]: testing package custodian version 2024.1.9-3 56s autopkgtest [21:55:45]: build not needed 57s autopkgtest [21:55:46]: test test-custodian: preparing testbed 57s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Starting pkgProblemResolver with broken count: 0 58s Starting 2 pkgProblemResolver with broken count: 0 58s Done 58s The following additional packages will be installed: 58s blt fonts-lyx libblas3 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 58s libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 58s libopenjp2-7 libqhull-r8.0 libraqm0 libsymspg2 libtcl8.6 libtk8.6 58s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 58s python-matplotlib-data python3-all python3-appdirs python3-brotli 58s python3-contourpy python3-custodian python3-cycler python3-dateutil 58s python3-decorator python3-fastjsonschema python3-fonttools python3-fs 58s python3-iniconfig python3-joblib python3-jupyter-core python3-kiwisolver 58s python3-latexcodec python3-lxml python3-lz4 python3-matplotlib python3-monty 58s python3-mpmath python3-nbformat python3-networkx python3-numpy 58s python3-packaging python3-palettable python3-pandas python3-pandas-lib 58s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 58s python3-pluggy python3-psutil python3-pybtex python3-pydantic 58s python3-pymatgen python3-pytest python3-ruamel.yaml python3-ruamel.yaml.clib 58s python3-scipy python3-spglib python3-sympy python3-tabulate python3-tenacity 58s python3-tk python3-tqdm python3-traitlets python3-ufolib2 58s python3-uncertainties python3-unicodedata2 tk8.6-blt2.5 unicode-data 58s x11-common 58s Suggested packages: 58s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 58s python-custodian-doc python-cycler-doc python-fastjsonschema-doc python3-pip 58s python-latexcodec-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 58s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 58s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 58s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 58s python3-gmpy2 python3-gdal python3-pydot python3-pygraphviz gcc gfortran 58s python-numpy-doc python3-dev python-pandas-doc python3-statsmodels 58s python-pil-doc python3-ipykernel python-pybtex-doc python-pymatgen-doc 58s python-scipy-doc texlive-fonts-extra python-sympy-doc python-tenacity-doc 58s tix python3-tk-dbg python-uncertainties-doc 58s Recommended packages: 58s javascript-common python3-simplejson python3-bs4 python3-cssselect 58s python3-html5lib python-monty-doc python3-torch python3-bottleneck 58s python3-numexpr python3-odf python3-openpyxl python3-tables python3-numba 58s python3-olefile python3-openbabel python3-mp-api python3-ase g++ 58s | c++-compiler isympy-common 58s The following NEW packages will be installed: 58s autopkgtest-satdep blt fonts-lyx libblas3 libgfortran5 libgomp1 58s libgraphite2-3 libharfbuzz0b libimagequant0 libjs-jquery libjs-jquery-ui 58s liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0 libraqm0 58s libsymspg2 libtcl8.6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2 libxrender1 58s libxslt1.1 libxss1 python-matplotlib-data python3-all python3-appdirs 58s python3-brotli python3-contourpy python3-custodian python3-cycler 58s python3-dateutil python3-decorator python3-fastjsonschema python3-fonttools 58s python3-fs python3-iniconfig python3-joblib python3-jupyter-core 58s python3-kiwisolver python3-latexcodec python3-lxml python3-lz4 58s python3-matplotlib python3-monty python3-mpmath python3-nbformat 58s python3-networkx python3-numpy python3-packaging python3-palettable 58s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 58s python3-platformdirs python3-plotly python3-pluggy python3-psutil 58s python3-pybtex python3-pydantic python3-pymatgen python3-pytest 58s python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy python3-spglib 58s python3-sympy python3-tabulate python3-tenacity python3-tk python3-tqdm 58s python3-traitlets python3-ufolib2 python3-uncertainties python3-unicodedata2 58s tk8.6-blt2.5 unicode-data x11-common 59s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 59s Need to get 84.2 MB/84.2 MB of archives. 59s After this operation, 438 MB of additional disk space will be used. 59s Get:1 /tmp/autopkgtest.BWHtai/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [728 B] 59s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 59s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 59s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 59s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 59s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 59s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 59s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 59s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 59s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.1-2 [171 kB] 59s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 59s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-4ubuntu2 [909 kB] 59s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-4ubuntu2 [148 kB] 59s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 59s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 59s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 59s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 59s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 59s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 59s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 59s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 59s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 59s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 59s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsymspg2 amd64 2.3.1-1ubuntu2 [209 kB] 59s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 59s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 59s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 59s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 59s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 59s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 59s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 59s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 59s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 59s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pydantic amd64 1.10.17-1 [1853 kB] 59s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-monty all 2024.5.24-1 [37.7 kB] 59s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB] 59s Get:37 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-1 [133 kB] 59s Get:38 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 59s Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-custodian all 2024.1.9-3 [76.9 kB] 59s Get:40 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 59s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 59s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 59s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 59s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 59s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 59s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 59s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 59s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 59s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.2-1 [1243 kB] 59s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 59s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 59s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 59s Get:53 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 59s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 59s Get:55 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-joblib all 1.3.2-2 [208 kB] 59s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-platformdirs all 4.2.1-1 [16.3 kB] 59s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-traitlets all 5.14.3+really5.5.0-1 [88.3 kB] 59s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-jupyter-core all 5.3.2-3 [25.6 kB] 59s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 59s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 59s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 59s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.4.0-1 [462 kB] 59s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 59s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.4.0-1 [9264 B] 59s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.1-1 [41.4 kB] 59s Get:66 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB] 59s Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 59s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 59s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB] 59s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB] 59s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 59s Get:72 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 59s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 59s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 59s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 59s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-spglib amd64 2.3.1-1ubuntu2 [28.8 kB] 59s Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 59s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tqdm all 4.66.4-1 [91.3 kB] 59s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB] 59s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pymatgen amd64 2024.1.27+dfsg1-7ubuntu1 [2461 kB] 59s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 60s Fetched 84.2 MB in 1s (98.0 MB/s) 60s Selecting previously unselected package libtcl8.6:amd64. 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74486 files and directories currently installed.) 60s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 60s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 60s Selecting previously unselected package libxrender1:amd64. 60s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 60s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 60s Selecting previously unselected package libxft2:amd64. 60s Preparing to unpack .../02-libxft2_2.3.6-1build1_amd64.deb ... 60s Unpacking libxft2:amd64 (2.3.6-1build1) ... 60s Selecting previously unselected package x11-common. 60s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 60s Unpacking x11-common (1:7.7+23ubuntu3) ... 60s Selecting previously unselected package libxss1:amd64. 60s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_amd64.deb ... 60s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 60s Selecting previously unselected package libtk8.6:amd64. 60s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_amd64.deb ... 60s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 60s Selecting previously unselected package tk8.6-blt2.5. 60s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 60s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 60s Selecting previously unselected package blt. 60s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_amd64.deb ... 60s Unpacking blt (2.5.3+dfsg-7build1) ... 60s Selecting previously unselected package fonts-lyx. 60s Preparing to unpack .../08-fonts-lyx_2.4.1-2_all.deb ... 60s Unpacking fonts-lyx (2.4.1-2) ... 60s Selecting previously unselected package libblas3:amd64. 60s Preparing to unpack .../09-libblas3_3.12.0-3build1_amd64.deb ... 60s Unpacking libblas3:amd64 (3.12.0-3build1) ... 60s Selecting previously unselected package libgfortran5:amd64. 60s Preparing to unpack .../10-libgfortran5_14.1.0-4ubuntu2_amd64.deb ... 60s Unpacking libgfortran5:amd64 (14.1.0-4ubuntu2) ... 60s Selecting previously unselected package libgomp1:amd64. 60s Preparing to unpack .../11-libgomp1_14.1.0-4ubuntu2_amd64.deb ... 60s Unpacking libgomp1:amd64 (14.1.0-4ubuntu2) ... 60s Selecting previously unselected package libgraphite2-3:amd64. 60s Preparing to unpack .../12-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 60s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 60s Selecting previously unselected package libharfbuzz0b:amd64. 60s Preparing to unpack .../13-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 60s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 61s Selecting previously unselected package libimagequant0:amd64. 61s Preparing to unpack .../14-libimagequant0_2.18.0-1build1_amd64.deb ... 61s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 61s Selecting previously unselected package libjs-jquery. 61s Preparing to unpack .../15-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 61s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 61s Selecting previously unselected package libjs-jquery-ui. 61s Preparing to unpack .../16-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 61s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 61s Selecting previously unselected package liblapack3:amd64. 61s Preparing to unpack .../17-liblapack3_3.12.0-3build1_amd64.deb ... 61s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 61s Selecting previously unselected package liblbfgsb0:amd64. 61s Preparing to unpack .../18-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 61s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 61s Selecting previously unselected package liblcms2-2:amd64. 61s Preparing to unpack .../19-liblcms2-2_2.14-2build1_amd64.deb ... 61s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 61s Selecting previously unselected package libqhull-r8.0:amd64. 61s Preparing to unpack .../20-libqhull-r8.0_2020.2-6build1_amd64.deb ... 61s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 61s Selecting previously unselected package libraqm0:amd64. 61s Preparing to unpack .../21-libraqm0_0.10.1-1build1_amd64.deb ... 61s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 61s Selecting previously unselected package libsymspg2:amd64. 61s Preparing to unpack .../22-libsymspg2_2.3.1-1ubuntu2_amd64.deb ... 61s Unpacking libsymspg2:amd64 (2.3.1-1ubuntu2) ... 61s Selecting previously unselected package libwebpdemux2:amd64. 61s Preparing to unpack .../23-libwebpdemux2_1.4.0-0.1_amd64.deb ... 61s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 61s Selecting previously unselected package libwebpmux3:amd64. 61s Preparing to unpack .../24-libwebpmux3_1.4.0-0.1_amd64.deb ... 61s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 61s Selecting previously unselected package libxslt1.1:amd64. 61s Preparing to unpack .../25-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 61s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 61s Selecting previously unselected package python-matplotlib-data. 61s Preparing to unpack .../26-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 61s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 61s Selecting previously unselected package python3-all. 61s Preparing to unpack .../27-python3-all_3.12.3-0ubuntu1_amd64.deb ... 61s Unpacking python3-all (3.12.3-0ubuntu1) ... 61s Selecting previously unselected package python3-appdirs. 61s Preparing to unpack .../28-python3-appdirs_1.4.4-4_all.deb ... 61s Unpacking python3-appdirs (1.4.4-4) ... 61s Selecting previously unselected package python3-brotli. 61s Preparing to unpack .../29-python3-brotli_1.1.0-2build2_amd64.deb ... 61s Unpacking python3-brotli (1.1.0-2build2) ... 61s Selecting previously unselected package python3-numpy. 61s Preparing to unpack .../30-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 61s Unpacking python3-numpy (1:1.26.4+ds-10) ... 61s Selecting previously unselected package python3-contourpy. 61s Preparing to unpack .../31-python3-contourpy_1.0.7-3_amd64.deb ... 61s Unpacking python3-contourpy (1.0.7-3) ... 61s Selecting previously unselected package python3-pydantic. 61s Preparing to unpack .../32-python3-pydantic_1.10.17-1_amd64.deb ... 61s Unpacking python3-pydantic (1.10.17-1) ... 61s Selecting previously unselected package python3-monty. 61s Preparing to unpack .../33-python3-monty_2024.5.24-1_all.deb ... 61s Unpacking python3-monty (2024.5.24-1) ... 61s Selecting previously unselected package python3-psutil. 61s Preparing to unpack .../34-python3-psutil_5.9.8-2build2_amd64.deb ... 61s Unpacking python3-psutil (5.9.8-2build2) ... 61s Selecting previously unselected package python3-ruamel.yaml.clib:amd64. 61s Preparing to unpack .../35-python3-ruamel.yaml.clib_0.2.8+ds-1_amd64.deb ... 61s Unpacking python3-ruamel.yaml.clib:amd64 (0.2.8+ds-1) ... 62s Selecting previously unselected package python3-ruamel.yaml. 62s Preparing to unpack .../36-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 62s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 62s Selecting previously unselected package python3-custodian. 62s Preparing to unpack .../37-python3-custodian_2024.1.9-3_all.deb ... 62s Unpacking python3-custodian (2024.1.9-3) ... 62s Selecting previously unselected package python3-cycler. 62s Preparing to unpack .../38-python3-cycler_0.12.1-1_all.deb ... 62s Unpacking python3-cycler (0.12.1-1) ... 62s Selecting previously unselected package python3-dateutil. 62s Preparing to unpack .../39-python3-dateutil_2.9.0-2_all.deb ... 62s Unpacking python3-dateutil (2.9.0-2) ... 62s Selecting previously unselected package python3-decorator. 62s Preparing to unpack .../40-python3-decorator_5.1.1-5_all.deb ... 62s Unpacking python3-decorator (5.1.1-5) ... 62s Selecting previously unselected package python3-fastjsonschema. 62s Preparing to unpack .../41-python3-fastjsonschema_2.20.0-1_all.deb ... 62s Unpacking python3-fastjsonschema (2.20.0-1) ... 62s Selecting previously unselected package python3-scipy. 62s Preparing to unpack .../42-python3-scipy_1.12.0-2_amd64.deb ... 62s Unpacking python3-scipy (1.12.0-2) ... 62s Selecting previously unselected package python3-ufolib2. 62s Preparing to unpack .../43-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 62s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 62s Selecting previously unselected package python3-mpmath. 62s Preparing to unpack .../44-python3-mpmath_1.3.0-1_all.deb ... 62s Unpacking python3-mpmath (1.3.0-1) ... 62s Selecting previously unselected package python3-sympy. 62s Preparing to unpack .../45-python3-sympy_1.12-8_all.deb ... 62s Unpacking python3-sympy (1.12-8) ... 63s Selecting previously unselected package python3-fs. 63s Preparing to unpack .../46-python3-fs_2.4.16-4_all.deb ... 63s Unpacking python3-fs (2.4.16-4) ... 63s Selecting previously unselected package python3-lxml:amd64. 63s Preparing to unpack .../47-python3-lxml_5.2.2-1_amd64.deb ... 63s Unpacking python3-lxml:amd64 (5.2.2-1) ... 63s Selecting previously unselected package python3-lz4. 63s Preparing to unpack .../48-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 63s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 63s Selecting previously unselected package python3-unicodedata2. 63s Preparing to unpack .../49-python3-unicodedata2_15.1.0+ds-1build1_amd64.deb ... 63s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 63s Selecting previously unselected package unicode-data. 63s Preparing to unpack .../50-unicode-data_15.1.0-1_all.deb ... 63s Unpacking unicode-data (15.1.0-1) ... 63s Selecting previously unselected package python3-fonttools. 63s Preparing to unpack .../51-python3-fonttools_4.46.0-1build2_amd64.deb ... 63s Unpacking python3-fonttools (4.46.0-1build2) ... 63s Selecting previously unselected package python3-iniconfig. 63s Preparing to unpack .../52-python3-iniconfig_1.1.1-2_all.deb ... 63s Unpacking python3-iniconfig (1.1.1-2) ... 63s Selecting previously unselected package python3-joblib. 63s Preparing to unpack .../53-python3-joblib_1.3.2-2_all.deb ... 63s Unpacking python3-joblib (1.3.2-2) ... 63s Selecting previously unselected package python3-platformdirs. 63s Preparing to unpack .../54-python3-platformdirs_4.2.1-1_all.deb ... 63s Unpacking python3-platformdirs (4.2.1-1) ... 63s Selecting previously unselected package python3-traitlets. 63s Preparing to unpack .../55-python3-traitlets_5.14.3+really5.5.0-1_all.deb ... 63s Unpacking python3-traitlets (5.14.3+really5.5.0-1) ... 63s Selecting previously unselected package python3-jupyter-core. 63s Preparing to unpack .../56-python3-jupyter-core_5.3.2-3_all.deb ... 63s Unpacking python3-jupyter-core (5.3.2-3) ... 63s Selecting previously unselected package python3-kiwisolver. 63s Preparing to unpack .../57-python3-kiwisolver_1.4.5-1_amd64.deb ... 63s Unpacking python3-kiwisolver (1.4.5-1) ... 63s Selecting previously unselected package python3-latexcodec. 63s Preparing to unpack .../58-python3-latexcodec_3.0.0-1_all.deb ... 63s Unpacking python3-latexcodec (3.0.0-1) ... 63s Selecting previously unselected package libopenjp2-7:amd64. 63s Preparing to unpack .../59-libopenjp2-7_2.5.0-2build3_amd64.deb ... 63s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 63s Selecting previously unselected package python3-pil:amd64. 63s Preparing to unpack .../60-python3-pil_10.4.0-1_amd64.deb ... 63s Unpacking python3-pil:amd64 (10.4.0-1) ... 63s Selecting previously unselected package python3-tk:amd64. 63s Preparing to unpack .../61-python3-tk_3.12.3-0ubuntu1_amd64.deb ... 63s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ... 63s Selecting previously unselected package python3-pil.imagetk:amd64. 63s Preparing to unpack .../62-python3-pil.imagetk_10.4.0-1_amd64.deb ... 63s Unpacking python3-pil.imagetk:amd64 (10.4.0-1) ... 63s Selecting previously unselected package python3-packaging. 63s Preparing to unpack .../63-python3-packaging_24.1-1_all.deb ... 63s Unpacking python3-packaging (24.1-1) ... 63s Selecting previously unselected package python3-matplotlib. 64s Preparing to unpack .../64-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ... 64s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 64s Selecting previously unselected package python3-nbformat. 64s Preparing to unpack .../65-python3-nbformat_5.9.1-1_all.deb ... 64s Unpacking python3-nbformat (5.9.1-1) ... 64s Selecting previously unselected package python3-networkx. 64s Preparing to unpack .../66-python3-networkx_3.2.1-4ubuntu1_all.deb ... 64s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 64s Selecting previously unselected package python3-palettable. 64s Preparing to unpack .../67-python3-palettable_3.3.3-1_all.deb ... 64s Unpacking python3-palettable (3.3.3-1) ... 64s Selecting previously unselected package python3-pandas-lib:amd64. 64s Preparing to unpack .../68-python3-pandas-lib_2.1.4+dfsg-8_amd64.deb ... 64s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 65s Selecting previously unselected package python3-pandas. 65s Preparing to unpack .../69-python3-pandas_2.1.4+dfsg-8_all.deb ... 65s Unpacking python3-pandas (2.1.4+dfsg-8) ... 65s Selecting previously unselected package python3-tenacity. 65s Preparing to unpack .../70-python3-tenacity_8.5.0-0ubuntu1_all.deb ... 65s Unpacking python3-tenacity (8.5.0-0ubuntu1) ... 65s Selecting previously unselected package python3-plotly. 65s Preparing to unpack .../71-python3-plotly_5.20.0+dfsg-1_all.deb ... 65s Unpacking python3-plotly (5.20.0+dfsg-1) ... 67s Selecting previously unselected package python3-pluggy. 67s Preparing to unpack .../72-python3-pluggy_1.5.0-1_all.deb ... 67s Unpacking python3-pluggy (1.5.0-1) ... 67s Selecting previously unselected package python3-pybtex. 67s Preparing to unpack .../73-python3-pybtex_0.24.0-4_all.deb ... 67s Unpacking python3-pybtex (0.24.0-4) ... 67s Selecting previously unselected package python3-spglib. 67s Preparing to unpack .../74-python3-spglib_2.3.1-1ubuntu2_amd64.deb ... 67s Unpacking python3-spglib (2.3.1-1ubuntu2) ... 67s Selecting previously unselected package python3-tabulate. 67s Preparing to unpack .../75-python3-tabulate_0.9.0-1_all.deb ... 67s Unpacking python3-tabulate (0.9.0-1) ... 67s Selecting previously unselected package python3-tqdm. 67s Preparing to unpack .../76-python3-tqdm_4.66.4-1_all.deb ... 67s Unpacking python3-tqdm (4.66.4-1) ... 67s Selecting previously unselected package python3-uncertainties. 67s Preparing to unpack .../77-python3-uncertainties_3.2.2-1_all.deb ... 67s Unpacking python3-uncertainties (3.2.2-1) ... 67s Selecting previously unselected package python3-pymatgen. 67s Preparing to unpack .../78-python3-pymatgen_2024.1.27+dfsg1-7ubuntu1_amd64.deb ... 67s Unpacking python3-pymatgen (2024.1.27+dfsg1-7ubuntu1) ... 67s Selecting previously unselected package python3-pytest. 67s Preparing to unpack .../79-python3-pytest_7.4.4-1_all.deb ... 67s Unpacking python3-pytest (7.4.4-1) ... 67s Selecting previously unselected package autopkgtest-satdep. 67s Preparing to unpack .../80-1-autopkgtest-satdep.deb ... 67s Unpacking autopkgtest-satdep (0) ... 67s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 67s Setting up liblcms2-2:amd64 (2.14-2build1) ... 67s Setting up python3-iniconfig (1.1.1-2) ... 67s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 67s Setting up python3-joblib (1.3.2-2) ... 67s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 67s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 67s Setting up fonts-lyx (2.4.1-2) ... 67s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 67s Setting up python3-tenacity (8.5.0-0ubuntu1) ... 68s Setting up python3-tqdm (4.66.4-1) ... 68s Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-1) ... 68s Setting up x11-common (1:7.7+23ubuntu3) ... 68s Setting up python3-tabulate (0.9.0-1) ... 68s Setting up python3-latexcodec (3.0.0-1) ... 68s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 68s Setting up python3-all (3.12.3-0ubuntu1) ... 68s Setting up libgomp1:amd64 (14.1.0-4ubuntu2) ... 68s Setting up python3-networkx (3.2.1-4ubuntu1) ... 70s Setting up python3-platformdirs (4.2.1-1) ... 70s Setting up python3-psutil (5.9.8-2build2) ... 70s Setting up unicode-data (15.1.0-1) ... 70s Setting up libsymspg2:amd64 (2.3.1-1ubuntu2) ... 70s Setting up python3-palettable (3.3.3-1) ... 70s Setting up python3-decorator (5.1.1-5) ... 70s Setting up libblas3:amd64 (3.12.0-3build1) ... 70s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 70s Setting up python3-packaging (24.1-1) ... 71s Setting up python3-brotli (1.1.0-2build2) ... 71s Setting up python3-pydantic (1.10.17-1) ... 71s Setting up python3-cycler (0.12.1-1) ... 71s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 71s Setting up python3-kiwisolver (1.4.5-1) ... 71s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 71s Setting up libgfortran5:amd64 (14.1.0-4ubuntu2) ... 71s Setting up python3-pluggy (1.5.0-1) ... 71s Setting up python3-pybtex (0.24.0-4) ... 72s Setting up python3-fastjsonschema (2.20.0-1) ... 72s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 72s Setting up python3-traitlets (5.14.3+really5.5.0-1) ... 72s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 72s Setting up python3-monty (2024.5.24-1) ... 72s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 72s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... 72s Setting up python3-dateutil (2.9.0-2) ... 72s Setting up python3-custodian (2024.1.9-3) ... 73s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 73s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 73s Setting up python3-mpmath (1.3.0-1) ... 73s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 73s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 73s Setting up python3-appdirs (1.4.4-4) ... 73s Setting up python3-jupyter-core (5.3.2-3) ... 73s Setting up python3-sympy (1.12-8) ... 79s Setting up liblapack3:amd64 (3.12.0-3build1) ... 79s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 79s Setting up libxft2:amd64 (2.3.6-1build1) ... 79s Setting up python3-pytest (7.4.4-1) ... 79s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 79s Setting up python3-nbformat (5.9.1-1) ... 80s Setting up python3-fs (2.4.16-4) ... 80s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 80s Setting up libraqm0:amd64 (0.10.1-1build1) ... 80s Setting up python3-plotly (5.20.0+dfsg-1) ... 86s Setting up python3-numpy (1:1.26.4+ds-10) ... 87s Setting up python3-lxml:amd64 (5.2.2-1) ... 88s Setting up python3-contourpy (1.0.7-3) ... 88s Setting up python3-spglib (2.3.1-1ubuntu2) ... 88s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 88s Setting up python3-uncertainties (3.2.2-1) ... 88s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 88s Setting up python3-scipy (1.12.0-2) ... 91s Setting up blt (2.5.3+dfsg-7build1) ... 91s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 91s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ... 91s Setting up python3-pil:amd64 (10.4.0-1) ... 91s Setting up python3-pandas (2.1.4+dfsg-8) ... 96s Setting up python3-pil.imagetk:amd64 (10.4.0-1) ... 96s Setting up python3-fonttools (4.46.0-1build2) ... 97s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 97s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 99s Setting up python3-pymatgen (2024.1.27+dfsg1-7ubuntu1) ... 100s /usr/lib/python3/dist-packages/pymatgen/io/lammps/outputs.py:113: SyntaxWarning: invalid escape sequence '\+' 100s pattern = file_pattern.replace("+","\+").replace("*", "([0-9]+)").replace("\\", "\\\\") 100s Setting up autopkgtest-satdep (0) ... 100s Processing triggers for libc-bin (2.39-0ubuntu9) ... 100s Processing triggers for man-db (2.12.1-2) ... 104s (Reading database ... 101392 files and directories currently installed.) 104s Removing autopkgtest-satdep (0) ... 104s autopkgtest [21:56:33]: test test-custodian: [----------------------- 105s ============================= test session starts ============================== 105s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 105s cachedir: .pytest_cache 105s rootdir: /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests 108s collecting ... collected 129 items / 1 deselected / 4 skipped / 128 selected 108s 108s test_custodian.py::CustodianTest::test_exitcode_error PASSED [ 0%] 108s test_custodian.py::CustodianTest::test_from_spec PASSED [ 1%] 108s test_custodian.py::CustodianTest::test_max_errors PASSED [ 2%] 108s 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lobster/test_jobs.py::TestLobsterJob::test_postprocess PASSED [ 32%] 129s nwchem/test_handlers.py::test_check_correct PASSED [ 33%] 130s vasp/test_handlers.py::VaspErrorHandlerTest::test_algotet PASSED [ 34%] 130s vasp/test_handlers.py::VaspErrorHandlerTest::test_amin PASSED [ 35%] 131s vasp/test_handlers.py::VaspErrorHandlerTest::test_bravais PASSED [ 35%] 131s vasp/test_handlers.py::VaspErrorHandlerTest::test_brions PASSED [ 36%] 132s vasp/test_handlers.py::VaspErrorHandlerTest::test_brmix PASSED [ 37%] 133s vasp/test_handlers.py::VaspErrorHandlerTest::test_bzint_vasp6 PASSED [ 38%] 134s vasp/test_handlers.py::VaspErrorHandlerTest::test_check_correct PASSED [ 39%] 134s vasp/test_handlers.py::VaspErrorHandlerTest::test_coef PASSED [ 39%] 135s vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet PASSED [ 40%] 136s vasp/test_handlers.py::VaspErrorHandlerTest::test_dfpt_ncore PASSED [ 41%] 136s vasp/test_handlers.py::VaspErrorHandlerTest::test_edddav PASSED [ 42%] 137s vasp/test_handlers.py::VaspErrorHandlerTest::test_eddiag PASSED [ 42%] 138s vasp/test_handlers.py::VaspErrorHandlerTest::test_eddrmm PASSED [ 43%] 138s vasp/test_handlers.py::VaspErrorHandlerTest::test_finite_difference_ncore PASSED [ 44%] 139s vasp/test_handlers.py::VaspErrorHandlerTest::test_frozen_job PASSED [ 45%] 140s vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal PASSED [ 46%] 140s vasp/test_handlers.py::VaspErrorHandlerTest::test_hnform PASSED [ 46%] 141s vasp/test_handlers.py::VaspErrorHandlerTest::test_inv_rot_matrix_vasp6 PASSED [ 47%] 141s vasp/test_handlers.py::VaspErrorHandlerTest::test_mesh_symmetry PASSED [ 48%] 142s vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient PASSED [ 49%] 142s vasp/test_handlers.py::VaspErrorHandlerTest::test_nicht_konv PASSED [ 50%] 143s vasp/test_handlers.py::VaspErrorHandlerTest::test_point_group PASSED [ 50%] 143s vasp/test_handlers.py::VaspErrorHandlerTest::test_point_group_vasp6 PASSED [ 51%] 144s vasp/test_handlers.py::VaspErrorHandlerTest::test_posmap PASSED [ 52%] 144s vasp/test_handlers.py::VaspErrorHandlerTest::test_posmap_vasp6 PASSED [ 53%] 145s vasp/test_handlers.py::VaspErrorHandlerTest::test_pssyevx PASSED [ 53%] 145s vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error PASSED [ 54%] 146s vasp/test_handlers.py::VaspErrorHandlerTest::test_rhosyg PASSED [ 55%] 146s vasp/test_handlers.py::VaspErrorHandlerTest::test_rhosyg_vasp6 PASSED [ 56%] 147s vasp/test_handlers.py::VaspErrorHandlerTest::test_rot_matrix PASSED [ 57%] 147s vasp/test_handlers.py::VaspErrorHandlerTest::test_rot_matrix_vasp6 PASSED [ 57%] 148s vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf PASSED [ 58%] 148s vasp/test_handlers.py::VaspErrorHandlerTest::test_subspace PASSED [ 59%] 149s vasp/test_handlers.py::VaspErrorHandlerTest::test_symprec_noise PASSED [ 60%] 149s vasp/test_handlers.py::VaspErrorHandlerTest::test_to_from_dict PASSED [ 60%] 152s vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands PASSED [ 61%] 152s vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands_round_error PASSED [ 62%] 153s vasp/test_handlers.py::VaspErrorHandlerTest::test_too_large_kspacing PASSED [ 63%] 154s vasp/test_handlers.py::VaspErrorHandlerTest::test_zbrent PASSED [ 64%] 156s vasp/test_handlers.py::AliasingErrorHandlerTest::test_aliasing PASSED [ 64%] 161s vasp/test_handlers.py::AliasingErrorHandlerTest::test_aliasing_incar PASSED [ 65%] 162s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin PASSED [ 66%] 166s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic PASSED [ 67%] 167s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat PASSED [ 67%] 169s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic PASSED [ 68%] 169s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan PASSED [ 69%] 170s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition PASSED [ 70%] 170s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_to_from_dict PASSED [ 71%] 170s vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal PASSED [ 71%] 170s vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal PASSED [ 72%] 170s vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal PASSED [ 73%] 170s vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal PASSED [ 74%] 170s vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf PASSED [ 75%] 170s vasp/test_handlers.py::LargeSigmaHandlerTest::test_check_correct_large_sigma PASSED [ 75%] 170s vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_potim_correction PASSED [ 76%] 170s vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_static_run_correction PASSED [ 77%] 170s vasp/test_handlers.py::ZpotrfErrorHandlerSmallTest::test_small PASSED [ 78%] 171s vasp/test_handlers.py::WalltimeHandlerTest::test_check_and_correct PASSED [ 78%] 171s vasp/test_handlers.py::WalltimeHandlerTest::test_walltime_start PASSED [ 79%] 171s vasp/test_handlers.py::PositiveEnergyHandlerTest::test_check_correct PASSED [ 80%] 171s vasp/test_handlers.py::PotimHandlerTest::test_check_correct PASSED [ 81%] 172s vasp/test_handlers.py::LrfCommHandlerTest::test_lrf_comm PASSED [ 82%] 172s vasp/test_handlers.py::KpointsTransHandlerTest::test_kpoints_trans PASSED [ 82%] 172s vasp/test_handlers.py::OutOfMemoryHandlerTest::test_oom PASSED [ 83%] 172s vasp/test_handlers.py::DriftErrorHandlerTest::test_check PASSED [ 84%] 172s vasp/test_handlers.py::DriftErrorHandlerTest::test_correct PASSED [ 85%] 173s vasp/test_io.py::TestIO::test_load_outcar PASSED [ 85%] 173s vasp/test_io.py::TestIO::test_load_vasprun PASSED [ 86%] 173s vasp/test_jobs.py::TestVaspJob::test_to_from_dict PASSED [ 87%] 173s vasp/test_jobs.py::TestVaspJob::test_setup PASSED [ 88%] 173s vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts PASSED [ 89%] 174s vasp/test_jobs.py::TestVaspJob::test_postprocess PASSED [ 89%] 174s vasp/test_jobs.py::TestVaspJob::test_continue PASSED [ 90%] 174s vasp/test_jobs.py::TestVaspJob::test_static PASSED [ 91%] 174s vasp/test_jobs.py::TestVaspNEBJob::test_to_from_dict PASSED [ 92%] 174s vasp/test_jobs.py::TestVaspNEBJob::test_setup PASSED [ 92%] 174s vasp/test_jobs.py::TestVaspNEBJob::test_postprocess PASSED [ 93%] 174s vasp/test_jobs.py::TestGenerateVaspInputJob::test_run PASSED [ 94%] 175s vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct PASSED [ 95%] 175s vasp/test_validators.py::TestVasprunXMLValidator::test_as_dict PASSED [ 96%] 175s vasp/test_validators.py::TestVaspFilesValidator::test_check_and_correct PASSED [ 96%] 175s vasp/test_validators.py::TestVaspFilesValidator::test_as_dict PASSED [ 97%] 175s vasp/test_validators.py::TestVaspNpTMDValidator::test_check_and_correct PASSED [ 98%] 175s vasp/test_validators.py::TestVaspNpTMDValidator::test_as_dict PASSED [ 99%] 176s vasp/test_validators.py::TestVaspAECCARValidator::test_check_and_correct PASSED [100%] 176s 176s =============================== warnings summary =============================== 176s test_custodian.py::CustodianTest::test_exitcode_error 176s /usr/lib/python3/dist-packages/custodian/custodian.py:514: UserWarning: subprocess returned a non-zero return code. Check outputs carefully... 176s warnings.warn("subprocess returned a non-zero return code. Check outputs carefully...") 176s 176s feff/test_jobs.py::test_setup 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/feff_unconverged/tmpzge_gj3a to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s feff/test_jobs.py::test_postprocess 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/feff_unconverged/tmpd0ilg_2t to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s lobster/test_jobs.py::TestLobsterJob::test_setup 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/lobster/lobsterins/tmp3q4j2rsv to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s lobster/test_jobs.py::TestLobsterJob::test_setup 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/lobster/lobsterins/tmp23om8dkb to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s lobster/test_jobs.py::TestLobsterJob::test_postprocess 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/lobster/vasp_lobster_output/tmpefcpbo1c to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s lobster/test_jobs.py::TestLobsterJob::test_postprocess 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/lobster/vasp_lobster_output/tmppad2y8jp to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal 176s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:539: UserWarning: EDWAV error reported by VASP without a simultaneous algo_tet error. You may wish to consider recompiling VASP with the -O1 optimization if you used -O2 and this error keeps cropping up. 176s warnings.warn( 176s 176s vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient 176s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:619: UserWarning: Double-check your INCAR. Something is potentially wrong. 176s warnings.warn("Double-check your INCAR. Something is potentially wrong.", UserWarning) 176s 176s vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error 176s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:631: UserWarning: Looks like you made a typo in the INCAR. Please double-check it. 176s warnings.warn("Looks like you made a typo in the INCAR. Please double-check it.", UserWarning) 176s 176s vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf 176s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:624: UserWarning: We suggest using a new version of the POTCAR files to resolve the SET_CORE_WF error. 176s warnings.warn( 176s 176s vasp/test_handlers.py: 15 warnings 176s vasp/test_io.py: 1 warning 176s vasp/test_validators.py: 2 warnings 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1224: DeprecationWarning: Testing an element's truth value will raise an exception in future versions. Use specific 'len(elem)' or 'elem is not None' test instead. 176s if elem.find("generation"): 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1021: UserWarning: No POTCAR file with matching TITEL fields was found in 176s /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 176s warnings.warn("No POTCAR file with matching TITEL fields was found in\n" + "\n ".join(potcar_paths)) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:303: UnconvergedVASPWarning: /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/vasprun.xml is an unconverged VASP run. 176s Electronic convergence reached: False. 176s Ionic convergence reached: True. 176s warnings.warn(msg, UnconvergedVASPWarning) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1021: UserWarning: No POTCAR file with matching TITEL fields was found in 176s /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 176s warnings.warn("No POTCAR file with matching TITEL fields was found in\n" + "\n ".join(potcar_paths)) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:303: UnconvergedVASPWarning: /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/vasprun.xml is an unconverged VASP run. 176s Electronic convergence reached: False. 176s Ionic convergence reached: True. 176s warnings.warn(msg, UnconvergedVASPWarning) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1021: UserWarning: No POTCAR file with matching TITEL fields was found in 176s /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 176s warnings.warn("No POTCAR file with matching TITEL fields was found in\n" + "\n ".join(potcar_paths)) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:303: UnconvergedVASPWarning: /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/vasprun.xml is an unconverged VASP run. 176s Electronic convergence reached: False. 176s Ionic convergence reached: True. 176s warnings.warn(msg, UnconvergedVASPWarning) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1021: UserWarning: No POTCAR file with matching TITEL fields was found in 176s /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 176s warnings.warn("No POTCAR file with matching TITEL fields was found in\n" + "\n ".join(potcar_paths)) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:303: UnconvergedVASPWarning: /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/vasprun.xml is an unconverged VASP run. 176s Electronic convergence reached: True. 176s Ionic convergence reached: False. 176s warnings.warn(msg, UnconvergedVASPWarning) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1021: UserWarning: No POTCAR file with matching TITEL fields was found in 176s /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 176s warnings.warn("No POTCAR file with matching TITEL fields was found in\n" + "\n ".join(potcar_paths)) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:303: UnconvergedVASPWarning: /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/vasprun.xml is an unconverged VASP run. 176s Electronic convergence reached: False. 176s Ionic convergence reached: True. 176s warnings.warn(msg, UnconvergedVASPWarning) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1021: UserWarning: No POTCAR file with matching TITEL fields was found in 176s /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 176s warnings.warn("No POTCAR file with matching TITEL fields was found in\n" + "\n ".join(potcar_paths)) 176s 176s vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:303: UnconvergedVASPWarning: /tmp/autopkgtest.BWHtai/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/vasprun.xml is an unconverged VASP run. 176s Electronic convergence reached: False. 176s Ionic convergence reached: True. 176s warnings.warn(msg, UnconvergedVASPWarning) 176s 176s vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 176s vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 176s vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 176s vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1021: UserWarning: No POTCAR file with matching TITEL fields was found in 176s 176s warnings.warn("No POTCAR file with matching TITEL fields was found in\n" + "\n ".join(potcar_paths)) 176s 176s vasp/test_jobs.py::TestVaspJob::test_setup 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/tmp4rks3jui to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/kspacing/tmptrdeyclm to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s vasp/test_jobs.py::TestVaspJob::test_postprocess 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/postprocess/tmpma82y16q to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s vasp/test_jobs.py::TestVaspJob::test_continue 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/postprocess/tmpy9y7_lxo to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s vasp/test_jobs.py::TestVaspJob::test_continue 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/postprocess/tmpeyisctrt to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s vasp/test_jobs.py::TestVaspNEBJob::test_setup 176s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/setup_neb/tmpl4mgv9ae to itself 176s warnings.warn(f"Cannot copy {fpath} to itself") 176s 176s vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:189: FutureWarning: get_vasp_input is deprecated 176s get_vasp_input will be removed in a future version of pymatgen. Use get_input_set instead. 176s vasp_input = self.get_vasp_input() 176s 176s vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 176s /usr/lib/python3/dist-packages/pymatgen/symmetry/kpath.py:177: UserWarning: The input structure does not match the expected standard primitive! The path may be incorrect. Use at your own risk. 176s warn( 176s 176s vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1021: UserWarning: No POTCAR file with matching TITEL fields was found in 176s /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/unconverged/POTCAR 176s warnings.warn("No POTCAR file with matching TITEL fields was found in\n" + "\n ".join(potcar_paths)) 176s 176s vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 176s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:303: UnconvergedVASPWarning: /tmp/autopkgtest.BWHtai/autopkgtest_tmp/runtests/files/unconverged/vasprun.xml is an unconverged VASP run. 176s Electronic convergence reached: False. 176s Ionic convergence reached: True. 176s warnings.warn(msg, UnconvergedVASPWarning) 176s 176s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 176s ===== 128 passed, 4 skipped, 1 deselected, 55 warnings in 71.41s (0:01:11) ===== 179s autopkgtest [21:57:48]: test test-custodian: -----------------------] 179s test-custodian PASS 179s autopkgtest [21:57:48]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 179s autopkgtest [21:57:48]: @@@@@@@@@@@@@@@@@@@@ summary 179s test-custodian PASS 193s nova [W] Skipping flock for amd64 193s Creating nova instance adt-oracular-amd64-custodian-20240717-215449-juju-7f2275-prod-proposed-migration-environment-2-27e65183-562a-44ad-a402-5c8712658ba8 from image adt/ubuntu-oracular-amd64-server-20240717.img (UUID 237cce77-d4d3-4a02-b7ca-715f54a2e98f)...