0s autopkgtest [01:27:16]: starting date and time: 2024-07-27 01:27:16+0000 0s autopkgtest [01:27:16]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [01:27:16]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4gm5l_1o/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+ --apt-upgrade cct --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=ncbi-blast+/2.16.0+ds-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-36.secgroup --name adt-oracular-amd64-cct-20240727-012714-juju-7f2275-prod-proposed-migration-environment-3-821c9d65-212f-4730-b6f1-1a1467e8bc83 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 101s autopkgtest [01:28:57]: testbed dpkg architecture: amd64 101s autopkgtest [01:28:57]: testbed apt version: 2.9.6 101s autopkgtest [01:28:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 102s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 102s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [402 kB] 102s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B] 102s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 102s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [51.2 kB] 102s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [49.4 kB] 102s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [92.1 kB] 102s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 102s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 102s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 102s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 102s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [165 kB] 102s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [368 kB] 102s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 102s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 102s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [8792 B] 102s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 103s Fetched 1332 kB in 0s (5258 kB/s) 103s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s Calculating upgrade... 106s The following packages will be upgraded: 106s binutils binutils-common binutils-x86-64-linux-gnu bpfcc-tools bpftrace 106s libbinutils libbpfcc libclang-cpp18 libclang1-18 libctf-nobfd0 libctf0 106s libgprofng0 libllvm18 liblz4-1 libsframe1 mawk python3-bpfcc 106s 17 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 66.8 MB of archives. 106s After this operation, 37.9 MB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 liblz4-1 amd64 1.9.4-3 [63.1 kB] 106s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 mawk amd64 1.3.4.20240622-2 [127 kB] 106s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libgprofng0 amd64 2.42.90.20240720-2ubuntu1 [860 kB] 106s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf0 amd64 2.42.90.20240720-2ubuntu1 [95.7 kB] 106s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf-nobfd0 amd64 2.42.90.20240720-2ubuntu1 [97.7 kB] 106s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-x86-64-linux-gnu amd64 2.42.90.20240720-2ubuntu1 [2479 kB] 106s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libbinutils amd64 2.42.90.20240720-2ubuntu1 [575 kB] 106s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils amd64 2.42.90.20240720-2ubuntu1 [18.2 kB] 106s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-common amd64 2.42.90.20240720-2ubuntu1 [243 kB] 106s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 libsframe1 amd64 2.42.90.20240720-2ubuntu1 [14.5 kB] 106s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libclang-cpp18 amd64 1:18.1.8-4ubuntu1 [13.4 MB] 107s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm18 amd64 1:18.1.8-4ubuntu1 [27.4 MB] 107s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libbpfcc amd64 0.30.0+ds-1ubuntu2 [644 kB] 107s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bpfcc all 0.30.0+ds-1ubuntu2 [40.3 kB] 107s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 bpfcc-tools all 0.30.0+ds-1ubuntu2 [697 kB] 107s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libclang1-18 amd64 1:18.1.8-4ubuntu1 [7755 kB] 107s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 bpftrace amd64 0.21.2-1ubuntu1 [12.3 MB] 107s Fetched 66.8 MB in 1s (57.7 MB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 108s Preparing to unpack .../liblz4-1_1.9.4-3_amd64.deb ... 108s Unpacking liblz4-1:amd64 (1.9.4-3) over (1.9.4-2) ... 108s Setting up liblz4-1:amd64 (1.9.4-3) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 108s Preparing to unpack .../00-mawk_1.3.4.20240622-2_amd64.deb ... 108s Unpacking mawk (1.3.4.20240622-2) over (1.3.4.20240622-1) ... 108s Preparing to unpack .../01-libgprofng0_2.42.90.20240720-2ubuntu1_amd64.deb ... 108s Unpacking libgprofng0:amd64 (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 108s Preparing to unpack .../02-libctf0_2.42.90.20240720-2ubuntu1_amd64.deb ... 108s Unpacking libctf0:amd64 (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 108s Preparing to unpack .../03-libctf-nobfd0_2.42.90.20240720-2ubuntu1_amd64.deb ... 108s Unpacking libctf-nobfd0:amd64 (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 108s Preparing to unpack .../04-binutils-x86-64-linux-gnu_2.42.90.20240720-2ubuntu1_amd64.deb ... 108s Unpacking binutils-x86-64-linux-gnu (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 108s Preparing to unpack .../05-libbinutils_2.42.90.20240720-2ubuntu1_amd64.deb ... 108s Unpacking libbinutils:amd64 (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 108s Preparing to unpack .../06-binutils_2.42.90.20240720-2ubuntu1_amd64.deb ... 108s Unpacking binutils (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 108s Preparing to unpack .../07-binutils-common_2.42.90.20240720-2ubuntu1_amd64.deb ... 108s Unpacking binutils-common:amd64 (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 108s Preparing to unpack .../08-libsframe1_2.42.90.20240720-2ubuntu1_amd64.deb ... 108s Unpacking libsframe1:amd64 (2.42.90.20240720-2ubuntu1) over (2.42.50.20240710-1ubuntu1) ... 108s Preparing to unpack .../09-libclang-cpp18_1%3a18.1.8-4ubuntu1_amd64.deb ... 108s Unpacking libclang-cpp18 (1:18.1.8-4ubuntu1) over (1:18.1.8-1) ... 109s Preparing to unpack .../10-libllvm18_1%3a18.1.8-4ubuntu1_amd64.deb ... 109s Unpacking libllvm18:amd64 (1:18.1.8-4ubuntu1) over (1:18.1.8-1) ... 110s Preparing to unpack .../11-libbpfcc_0.30.0+ds-1ubuntu2_amd64.deb ... 110s Unpacking libbpfcc:amd64 (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 110s Preparing to unpack .../12-python3-bpfcc_0.30.0+ds-1ubuntu2_all.deb ... 110s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 110s Preparing to unpack .../13-bpfcc-tools_0.30.0+ds-1ubuntu2_all.deb ... 110s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 110s Preparing to unpack .../14-libclang1-18_1%3a18.1.8-4ubuntu1_amd64.deb ... 110s Unpacking libclang1-18 (1:18.1.8-4ubuntu1) over (1:18.1.8-1) ... 110s Preparing to unpack .../15-bpftrace_0.21.2-1ubuntu1_amd64.deb ... 110s Unpacking bpftrace (0.21.2-1ubuntu1) over (0.20.2-1ubuntu4) ... 111s Setting up binutils-common:amd64 (2.42.90.20240720-2ubuntu1) ... 111s Setting up libctf-nobfd0:amd64 (2.42.90.20240720-2ubuntu1) ... 111s Setting up libsframe1:amd64 (2.42.90.20240720-2ubuntu1) ... 111s Setting up mawk (1.3.4.20240622-2) ... 111s Setting up libbinutils:amd64 (2.42.90.20240720-2ubuntu1) ... 111s Setting up libllvm18:amd64 (1:18.1.8-4ubuntu1) ... 111s Setting up libctf0:amd64 (2.42.90.20240720-2ubuntu1) ... 111s Setting up libclang1-18 (1:18.1.8-4ubuntu1) ... 111s Setting up libgprofng0:amd64 (2.42.90.20240720-2ubuntu1) ... 111s Setting up libclang-cpp18 (1:18.1.8-4ubuntu1) ... 111s Setting up libbpfcc:amd64 (0.30.0+ds-1ubuntu2) ... 111s Setting up python3-bpfcc (0.30.0+ds-1ubuntu2) ... 111s Setting up binutils-x86-64-linux-gnu (2.42.90.20240720-2ubuntu1) ... 111s Setting up bpftrace (0.21.2-1ubuntu1) ... 111s Setting up binutils (2.42.90.20240720-2ubuntu1) ... 111s Setting up bpfcc-tools (0.30.0+ds-1ubuntu2) ... 111s Processing triggers for man-db (2.12.1-2) ... 112s Processing triggers for libc-bin (2.39-0ubuntu9) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 113s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 114s Reading package lists... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s autopkgtest [01:29:13]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 117s autopkgtest [01:29:13]: @@@@@@@@@@@@@@@@@@@@ apt-source cct 120s Get:1 http://ftpmaster.internal/ubuntu oracular/universe cct 1:1.0.3-1 (dsc) [1997 B] 120s Get:2 http://ftpmaster.internal/ubuntu oracular/universe cct 1:1.0.3-1 (tar) [81.7 MB] 120s Get:3 http://ftpmaster.internal/ubuntu oracular/universe cct 1:1.0.3-1 (diff) [11.7 kB] 120s gpgv: Signature made Sun Jan 16 15:11:18 2022 UTC 120s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 120s gpgv: issuer "tille@debian.org" 120s gpgv: Can't check signature: No public key 120s dpkg-source: warning: cannot verify inline signature for ./cct_1.0.3-1.dsc: no acceptable signature found 139s autopkgtest [01:29:20]: testing package cct version 1:1.0.3-1 140s autopkgtest [01:29:36]: build not needed 147s autopkgtest [01:29:43]: test run-unit-test: preparing testbed 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s Starting pkgProblemResolver with broken count: 0 149s Starting 2 pkgProblemResolver with broken count: 0 149s Done 149s The following additional packages will be installed: 149s adwaita-icon-theme at-spi2-common bioperl ca-certificates-java cct 149s cct-examples cgview dconf-gsettings-backend dconf-service default-jre 149s default-jre-headless fontconfig gtk-update-icon-cache hicolor-icon-theme 149s humanity-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 149s java-common java-wrappers libalgorithm-diff-perl libapache-pom-java 149s libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 149s libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 149s libbatik-java libbio-perl-perl libcairo-gobject2 libcairo2 149s libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libcolord2 149s libcommons-io-java libcommons-lang-java libcommons-logging-java 149s libcommons-parent-java libcups2t64 libdata-stag-perl libdatrie1 libdconf1 149s libdevel-stacktrace-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 149s libdrm-radeon1 libencode-locale-perl libepoxy0 liberror-perl 149s libexception-class-perl libfftw3-double3 libfile-listing-perl 149s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri 149s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgtk-3-0t64 libgtk-3-common 149s libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl 149s libhttp-cookies-perl libhttp-date-perl libhttp-message-perl 149s libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl 149s libio-string-perl libjargs-java libjaxp1.3-java liblcms2-2 libllvm17t64 149s liblqr-1-0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl 149s libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 libmbedcrypto7t64 149s libmbedtls14t64 libmbedx509-1t64 libnet-http-perl libnet-ssleay-perl 149s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 149s libpciaccess0 libpcsclite1 libpixman-1-0 libraw23t64 libsub-uplevel-perl 149s libtest-deep-perl libtest-differences-perl libtest-exception-perl 149s libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 149s libtie-ixhash-perl libtimedate-perl libtry-tiny-perl liburi-perl libvulkan1 149s libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebpdemux2 149s libwebpmux3 libwww-perl libwww-robotrules-perl libx11-xcb1 libxcb-dri2-0 149s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 149s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 149s libxdamage1 libxerces2-java libxfixes3 libxi6 libxinerama1 149s libxml-commons-external-java libxml-commons-resolver1.1-java 149s libxmlgraphics-commons-java libxrandr2 libxrender1 libxshmfence1 libxtst6 149s libxxf86vm1 ncbi-blast+ ncbi-blast+-legacy ncbi-data openjdk-21-jre 149s openjdk-21-jre-headless perl-openssl-defaults ubuntu-mono unzip x11-common 149s Suggested packages: 149s imagemagick-6-doc autotrace cups-bsd | lpr | lprng enscript ffmpeg gimp 149s gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance 149s sane-utils texlive-base-bin transfig libraw-bin xdg-utils alsa-utils 149s libasound2-plugins librhino-java libxml-sax-expatxs-perl colord 149s libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java 149s liblog4j1.2-java cups-common libfftw3-bin libfftw3-dev gvfs 149s libdata-dump-perl libio-compress-brotli-perl liblcms2-utils 149s libcrypt-ssleay-perl libmagickcore-6.q16-7-extra pcscd libsub-name-perl 149s libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl 149s libxerces2-java-doc libxml-commons-resolver1.1-java-doc 149s libxmlgraphics-commons-java-doc libnss-mdns fonts-dejavu-extra 149s fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei 149s | fonts-wqy-zenhei fonts-indic debhelper zip 149s Recommended packages: 149s librsvg2-common bioperl-run perl-doc libcache-cache-perl 149s libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl 149s libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl 149s libxml-twig-perl libset-scalar-perl libmagickcore-6.q16-7-extra ghostscript 149s netpbm libalgorithm-diff-xs-perl alsa-ucm-conf alsa-topology-conf 149s at-spi2-core bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl 149s libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl 149s libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl 149s libgraph-perl libgraphviz-perl libhtml-tableextract-perl libpostscript-perl 149s libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl 149s libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl 149s libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl 149s libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk 149s libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl 149s libxml-perl libgdk-pixbuf2.0-bin libgl1-amber-dri libgtk-3-bin 149s libhtml-format-perl fonts-urw-base35 mesa-vulkan-drivers | vulkan-icd 149s libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl 149s libatk-wrapper-java-jni fonts-dejavu-extra 149s The following NEW packages will be installed: 149s adwaita-icon-theme at-spi2-common autopkgtest-satdep bioperl 149s ca-certificates-java cct cct-examples cgview dconf-gsettings-backend 149s dconf-service default-jre default-jre-headless fontconfig 149s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme imagemagick 149s imagemagick-6-common imagemagick-6.q16 java-common java-wrappers 149s libalgorithm-diff-perl libapache-pom-java libasound2-data libasound2t64 149s libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 149s libavahi-common-data libavahi-common3 libbatik-java libbio-perl-perl 149s libcairo-gobject2 libcairo2 libcapture-tiny-perl 149s libclass-data-inheritable-perl libclone-perl libcolord2 libcommons-io-java 149s libcommons-lang-java libcommons-logging-java libcommons-parent-java 149s libcups2t64 libdata-stag-perl libdatrie1 libdconf1 libdevel-stacktrace-perl 149s libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 149s libencode-locale-perl libepoxy0 liberror-perl libexception-class-perl 149s libfftw3-double3 libfile-listing-perl libgdk-pixbuf-2.0-0 149s libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa 149s libglvnd0 libglx-mesa0 libglx0 libgtk-3-0t64 libgtk-3-common 149s libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl 149s libhttp-cookies-perl libhttp-date-perl libhttp-message-perl 149s libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl 149s libio-string-perl libjargs-java libjaxp1.3-java liblcms2-2 libllvm17t64 149s liblqr-1-0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl 149s libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 libmbedcrypto7t64 149s libmbedtls14t64 libmbedx509-1t64 libnet-http-perl libnet-ssleay-perl 149s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 149s libpciaccess0 libpcsclite1 libpixman-1-0 libraw23t64 libsub-uplevel-perl 149s libtest-deep-perl libtest-differences-perl libtest-exception-perl 149s libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 149s libtie-ixhash-perl libtimedate-perl libtry-tiny-perl liburi-perl libvulkan1 149s libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebpdemux2 149s libwebpmux3 libwww-perl libwww-robotrules-perl libx11-xcb1 libxcb-dri2-0 149s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 149s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 149s libxdamage1 libxerces2-java libxfixes3 libxi6 libxinerama1 149s libxml-commons-external-java libxml-commons-resolver1.1-java 149s libxmlgraphics-commons-java libxrandr2 libxrender1 libxshmfence1 libxtst6 149s libxxf86vm1 ncbi-blast+ ncbi-blast+-legacy ncbi-data openjdk-21-jre 149s openjdk-21-jre-headless perl-openssl-defaults ubuntu-mono unzip x11-common 149s 0 upgraded, 157 newly installed, 0 to remove and 0 not upgraded. 149s Need to get 211 MB/211 MB of archives. 149s After this operation, 708 MB of additional disk space will be used. 149s Get:1 /tmp/autopkgtest.DGf6p0/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [712 B] 149s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libfftw3-double3 amd64 3.3.10-1ubuntu3 [838 kB] 149s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 149s Get:4 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblqr-1-0 amd64 0.4.2-2.1build2 [28.5 kB] 149s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libltdl7 amd64 2.4.7-7build1 [40.3 kB] 149s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 149s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libraw23t64 amd64 0.21.2-2.1build1 [378 kB] 149s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 149s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 149s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 imagemagick-6-common all 8:6.9.13.12+dfsg1-1 [69.5 kB] 149s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmagickcore-6.q16-7t64 amd64 8:6.9.13.12+dfsg1-1 [1821 kB] 149s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmagickwand-6.q16-7t64 amd64 8:6.9.13.12+dfsg1-1 [316 kB] 149s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [7888 B] 149s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-1 [147 kB] 149s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 gtk-update-icon-cache amd64 3.24.43-1ubuntu1 [51.9 kB] 149s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 hicolor-icon-theme all 0.18-1 [13.5 kB] 149s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 humanity-icon-theme all 0.6.16 [1282 kB] 149s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 149s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 adwaita-icon-theme all 46.0-1 [723 kB] 149s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 at-spi2-common all 2.52.0-1build1 [8674 B] 149s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 149s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 libdata-stag-perl all 0.14-3 [372 kB] 149s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbio-perl-perl all 1.7.8-1 [2580 kB] 149s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 libclass-data-inheritable-perl all 0.08-3 [8084 B] 149s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 149s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libexception-class-perl all 1.45-1 [28.6 kB] 149s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-deep-perl all 1.204-1 [47.1 kB] 149s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libcapture-tiny-perl all 0.48-2 [20.2 kB] 149s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libalgorithm-diff-perl all 1.201-1 [41.8 kB] 149s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtext-diff-perl all 1.45-2 [25.6 kB] 149s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-differences-perl all 0.71-1 [15.8 kB] 149s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsub-uplevel-perl all 0.2800-3 [11.6 kB] 149s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-exception-perl all 0.43-3 [13.4 kB] 149s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-warn-perl all 0.37-2 [12.6 kB] 149s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-most-perl all 0.38-1 [21.5 kB] 149s Get:36 http://ftpmaster.internal/ubuntu oracular/universe amd64 bioperl all 1.7.8-1 [216 kB] 149s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 ca-certificates-java all 20240118 [11.6 kB] 149s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 unzip amd64 6.0-28ubuntu5 [180 kB] 149s Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 java-wrappers all 0.4 [8662 B] 149s Get:40 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjaxp1.3-java all 1.3.05-6 [227 kB] 149s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] 149s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 libapache-pom-java all 29-2 [5284 B] 149s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcommons-parent-java all 56-1 [10.7 kB] 149s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcommons-io-java all 2.16.1-1 [451 kB] 149s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 149s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxmlgraphics-commons-java all 2.8-2 [619 kB] 149s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbatik-java all 1.17+dfsg-1 [3877 kB] 150s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcommons-lang-java all 2.6-10 [270 kB] 150s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjargs-java all 1.0.0-5 [13.9 kB] 150s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] 150s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxerces2-java all 2.12.2-1 [1430 kB] 150s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 java-common all 0.75+exp1 [6798 B] 150s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libpcsclite1 amd64 2.2.3-1 [23.6 kB] 150s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 openjdk-21-jre-headless amd64 21.0.4+7-1ubuntu2 [46.6 MB] 150s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 default-jre-headless amd64 2:1.21-75+exp1 [3094 B] 150s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libatk1.0-0t64 amd64 2.52.0-1build1 [55.3 kB] 150s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 libxi6 amd64 2:1.8.1-1build1 [32.4 kB] 150s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 libatspi2.0-0t64 amd64 2.52.0-1build1 [80.5 kB] 150s Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 libatk-bridge2.0-0t64 amd64 2.52.0-1build1 [66.0 kB] 150s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB] 150s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 150s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 150s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 150s Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo2 amd64 1.18.0-3build1 [566 kB] 150s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo-gobject2 amd64 1.18.0-3build1 [127 kB] 150s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 libcolord2 amd64 1.4.7-1build2 [149 kB] 150s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 libavahi-common-data amd64 0.8-13ubuntu6 [29.7 kB] 150s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 libavahi-common3 amd64 0.8-13ubuntu6 [23.3 kB] 150s Get:69 http://ftpmaster.internal/ubuntu oracular/main amd64 libavahi-client3 amd64 0.8-13ubuntu6 [26.8 kB] 150s Get:70 http://ftpmaster.internal/ubuntu oracular/main amd64 libcups2t64 amd64 2.4.7-1.2ubuntu9 [267 kB] 150s Get:71 http://ftpmaster.internal/ubuntu oracular/main amd64 libepoxy0 amd64 1.5.10-1build1 [220 kB] 150s Get:72 http://ftpmaster.internal/ubuntu oracular/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 150s Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 150s Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 150s Get:75 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 150s Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [233 kB] 150s Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [42.3 kB] 150s Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [28.7 kB] 150s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 libwayland-client0 amd64 1.22.0-2.1build1 [26.4 kB] 150s Get:80 http://ftpmaster.internal/ubuntu oracular/main amd64 libwayland-cursor0 amd64 1.22.0-2.1build1 [10.4 kB] 150s Get:81 http://ftpmaster.internal/ubuntu oracular/main amd64 libwayland-egl1 amd64 1.22.0-2.1build1 [5628 B] 150s Get:82 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcomposite1 amd64 1:0.4.5-1build3 [6320 B] 150s Get:83 http://ftpmaster.internal/ubuntu oracular/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 150s Get:84 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcursor1 amd64 1:1.2.2-1 [20.9 kB] 150s Get:85 http://ftpmaster.internal/ubuntu oracular/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B] 150s Get:86 http://ftpmaster.internal/ubuntu oracular/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B] 150s Get:87 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB] 150s Get:88 http://ftpmaster.internal/ubuntu oracular/main amd64 libdconf1 amd64 0.40.0-4build2 [39.4 kB] 150s Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 dconf-service amd64 0.40.0-4build2 [27.5 kB] 150s Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 dconf-gsettings-backend amd64 0.40.0-4build2 [22.1 kB] 150s Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 libgtk-3-common all 3.24.43-1ubuntu1 [1201 kB] 150s Get:92 http://ftpmaster.internal/ubuntu oracular/main amd64 libgtk-3-0t64 amd64 3.24.43-1ubuntu1 [2899 kB] 151s Get:93 http://ftpmaster.internal/ubuntu oracular/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 151s Get:94 http://ftpmaster.internal/ubuntu oracular/main amd64 libglapi-mesa amd64 24.0.9-0ubuntu2 [40.7 kB] 151s Get:95 http://ftpmaster.internal/ubuntu oracular/main amd64 libx11-xcb1 amd64 2:1.8.7-1build1 [7800 B] 151s Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B] 151s Get:97 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 151s Get:98 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 151s Get:99 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 151s Get:100 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 151s Get:101 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 151s Get:102 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 151s Get:103 http://ftpmaster.internal/ubuntu oracular/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 151s Get:104 http://ftpmaster.internal/ubuntu oracular/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 151s Get:105 http://ftpmaster.internal/ubuntu oracular/main amd64 libvulkan1 amd64 1.3.283.0-1 [143 kB] 151s Get:106 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [20.7 kB] 151s Get:107 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 151s Get:108 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-intel1 amd64 2.4.121-2 [63.8 kB] 151s Get:109 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-nouveau2 amd64 2.4.121-2 [17.6 kB] 151s Get:110 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-radeon1 amd64 2.4.121-2 [20.7 kB] 151s Get:111 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-12 [26.2 MB] 151s Get:112 http://ftpmaster.internal/ubuntu oracular/main amd64 libgl1-mesa-dri amd64 24.0.9-0ubuntu2 [8937 kB] 151s Get:113 http://ftpmaster.internal/ubuntu oracular/main amd64 libglx-mesa0 amd64 24.0.9-0ubuntu2 [151 kB] 151s Get:114 http://ftpmaster.internal/ubuntu oracular/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 151s Get:115 http://ftpmaster.internal/ubuntu oracular/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 151s Get:116 http://ftpmaster.internal/ubuntu oracular/main amd64 libasound2-data all 1.2.12-1 [21.0 kB] 151s Get:117 http://ftpmaster.internal/ubuntu oracular/main amd64 libasound2t64 amd64 1.2.12-1 [394 kB] 151s Get:118 http://ftpmaster.internal/ubuntu oracular/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 151s Get:119 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 151s Get:120 http://ftpmaster.internal/ubuntu oracular/main amd64 libxtst6 amd64 2:1.2.3-1.1build1 [12.6 kB] 151s Get:121 http://ftpmaster.internal/ubuntu oracular/main amd64 openjdk-21-jre amd64 21.0.4+7-1ubuntu2 [219 kB] 151s Get:122 http://ftpmaster.internal/ubuntu oracular/main amd64 default-jre amd64 2:1.21-75+exp1 [922 B] 151s Get:123 http://ftpmaster.internal/ubuntu oracular/universe amd64 cgview all 0.0.20100111-7 [2220 kB] 151s Get:124 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-data all 6.1.20170106+dfsg2-3 [3966 kB] 151s Get:125 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedcrypto7t64 amd64 2.28.8-1 [209 kB] 151s Get:126 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedx509-1t64 amd64 2.28.8-1 [46.6 kB] 151s Get:127 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedtls14t64 amd64 2.28.8-1 [82.2 kB] 151s Get:128 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 ncbi-blast+ amd64 2.16.0+ds-3 [15.2 MB] 151s Get:129 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 ncbi-blast+-legacy all 2.16.0+ds-3 [4992 B] 151s Get:130 http://ftpmaster.internal/ubuntu oracular/universe amd64 imagemagick-6.q16 amd64 8:6.9.13.12+dfsg1-1 [254 kB] 151s Get:131 http://ftpmaster.internal/ubuntu oracular/universe amd64 imagemagick amd64 8:6.9.13.12+dfsg1-1 [14.2 kB] 151s Get:132 http://ftpmaster.internal/ubuntu oracular/main amd64 liberror-perl all 0.17029-2 [25.6 kB] 151s Get:133 http://ftpmaster.internal/ubuntu oracular/main amd64 libtie-ixhash-perl all 1.23-4 [11.3 kB] 151s Get:134 http://ftpmaster.internal/ubuntu oracular/main amd64 libencode-locale-perl all 1.05-3 [11.6 kB] 151s Get:135 http://ftpmaster.internal/ubuntu oracular/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB] 151s Get:136 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-date-perl all 6.06-1 [10.2 kB] 151s Get:137 http://ftpmaster.internal/ubuntu oracular/main amd64 libfile-listing-perl all 6.16-1 [11.3 kB] 151s Get:138 http://ftpmaster.internal/ubuntu oracular/main amd64 libhtml-tagset-perl all 3.24-1 [14.1 kB] 151s Get:139 http://ftpmaster.internal/ubuntu oracular/main amd64 liburi-perl all 5.28-1 [88.1 kB] 151s Get:140 http://ftpmaster.internal/ubuntu oracular/main amd64 libhtml-parser-perl amd64 3.82-1 [85.6 kB] 151s Get:141 http://ftpmaster.internal/ubuntu oracular/main amd64 libhtml-tree-perl all 5.07-3 [200 kB] 151s Get:142 http://ftpmaster.internal/ubuntu oracular/main amd64 libclone-perl amd64 0.46-1build3 [10.7 kB] 151s Get:143 http://ftpmaster.internal/ubuntu oracular/main amd64 libio-html-perl all 1.004-3 [15.9 kB] 151s Get:144 http://ftpmaster.internal/ubuntu oracular/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 151s Get:145 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-message-perl all 6.46-1ubuntu1 [75.9 kB] 151s Get:146 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-cookies-perl all 6.11-1 [18.2 kB] 151s Get:147 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-negotiate-perl all 6.01-2 [12.4 kB] 151s Get:148 http://ftpmaster.internal/ubuntu oracular/main amd64 perl-openssl-defaults amd64 7build3 [6626 B] 151s Get:149 http://ftpmaster.internal/ubuntu oracular/main amd64 libnet-ssleay-perl amd64 1.94-1build4 [316 kB] 151s Get:150 http://ftpmaster.internal/ubuntu oracular/main amd64 libio-socket-ssl-perl all 2.088-1 [200 kB] 151s Get:151 http://ftpmaster.internal/ubuntu oracular/main amd64 libnet-http-perl all 6.23-1 [22.3 kB] 151s Get:152 http://ftpmaster.internal/ubuntu oracular/main amd64 liblwp-protocol-https-perl all 6.14-1 [9040 B] 151s Get:153 http://ftpmaster.internal/ubuntu oracular/main amd64 libtry-tiny-perl all 0.31-2 [20.8 kB] 151s Get:154 http://ftpmaster.internal/ubuntu oracular/main amd64 libwww-robotrules-perl all 6.02-1 [12.6 kB] 151s Get:155 http://ftpmaster.internal/ubuntu oracular/main amd64 libwww-perl all 6.77-1 [138 kB] 151s Get:156 http://ftpmaster.internal/ubuntu oracular/universe amd64 cct all 1:1.0.3-1 [36.3 MB] 152s Get:157 http://ftpmaster.internal/ubuntu oracular/universe amd64 cct-examples all 1:1.0.3-1 [43.6 MB] 153s Fetched 211 MB in 3s (71.2 MB/s) 153s Selecting previously unselected package libfftw3-double3:amd64. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74531 files and directories currently installed.) 153s Preparing to unpack .../000-libfftw3-double3_3.3.10-1ubuntu3_amd64.deb ... 153s Unpacking libfftw3-double3:amd64 (3.3.10-1ubuntu3) ... 153s Selecting previously unselected package liblcms2-2:amd64. 153s Preparing to unpack .../001-liblcms2-2_2.14-2build1_amd64.deb ... 153s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 153s Selecting previously unselected package liblqr-1-0:amd64. 153s Preparing to 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158s Unpacking libthai0:amd64 (0.1.29-2build1) ... 158s Selecting previously unselected package libpango-1.0-0:amd64. 158s Preparing to unpack .../074-libpango-1.0-0_1.54.0+ds-1_amd64.deb ... 158s Unpacking libpango-1.0-0:amd64 (1.54.0+ds-1) ... 158s Selecting previously unselected package libpangoft2-1.0-0:amd64. 158s Preparing to unpack .../075-libpangoft2-1.0-0_1.54.0+ds-1_amd64.deb ... 158s Unpacking libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... 158s Selecting previously unselected package libpangocairo-1.0-0:amd64. 158s Preparing to unpack .../076-libpangocairo-1.0-0_1.54.0+ds-1_amd64.deb ... 158s Unpacking libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... 158s Selecting previously unselected package libwayland-client0:amd64. 158s Preparing to unpack .../077-libwayland-client0_1.22.0-2.1build1_amd64.deb ... 158s Unpacking libwayland-client0:amd64 (1.22.0-2.1build1) ... 158s Selecting previously unselected package libwayland-cursor0:amd64. 158s Preparing to unpack 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.../093-libx11-xcb1_2%3a1.8.7-1build1_amd64.deb ... 158s Unpacking libx11-xcb1:amd64 (2:1.8.7-1build1) ... 158s Selecting previously unselected package libxcb-dri2-0:amd64. 158s Preparing to unpack .../094-libxcb-dri2-0_1.17.0-2_amd64.deb ... 158s Unpacking libxcb-dri2-0:amd64 (1.17.0-2) ... 158s Selecting previously unselected package libxcb-dri3-0:amd64. 158s Preparing to unpack .../095-libxcb-dri3-0_1.17.0-2_amd64.deb ... 158s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 159s Selecting previously unselected package libxcb-glx0:amd64. 159s Preparing to unpack .../096-libxcb-glx0_1.17.0-2_amd64.deb ... 159s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 159s Selecting previously unselected package libxcb-present0:amd64. 159s Preparing to unpack .../097-libxcb-present0_1.17.0-2_amd64.deb ... 159s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 159s Selecting previously unselected package libxcb-randr0:amd64. 159s Preparing to unpack .../098-libxcb-randr0_1.17.0-2_amd64.deb ... 159s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 159s Selecting previously unselected package libxcb-sync1:amd64. 159s Preparing to unpack .../099-libxcb-sync1_1.17.0-2_amd64.deb ... 159s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 159s Selecting previously unselected package libxcb-xfixes0:amd64. 159s Preparing to unpack .../100-libxcb-xfixes0_1.17.0-2_amd64.deb ... 159s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 159s Selecting previously unselected package libxshmfence1:amd64. 159s Preparing to unpack .../101-libxshmfence1_1.3-1build5_amd64.deb ... 159s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 159s Selecting previously unselected package libxxf86vm1:amd64. 159s Preparing to unpack .../102-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 159s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 159s Selecting previously unselected package libvulkan1:amd64. 159s Preparing to unpack .../103-libvulkan1_1.3.283.0-1_amd64.deb ... 159s Unpacking libvulkan1:amd64 (1.3.283.0-1) ... 159s Selecting previously unselected package libdrm-amdgpu1:amd64. 159s Preparing to unpack .../104-libdrm-amdgpu1_2.4.121-2_amd64.deb ... 159s Unpacking libdrm-amdgpu1:amd64 (2.4.121-2) ... 159s Selecting previously unselected package libpciaccess0:amd64. 159s Preparing to unpack .../105-libpciaccess0_0.17-3build1_amd64.deb ... 159s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 159s Selecting previously unselected package libdrm-intel1:amd64. 159s Preparing to unpack .../106-libdrm-intel1_2.4.121-2_amd64.deb ... 159s Unpacking libdrm-intel1:amd64 (2.4.121-2) ... 159s Selecting previously unselected package libdrm-nouveau2:amd64. 159s Preparing to unpack .../107-libdrm-nouveau2_2.4.121-2_amd64.deb ... 159s Unpacking libdrm-nouveau2:amd64 (2.4.121-2) ... 159s Selecting previously unselected package libdrm-radeon1:amd64. 159s Preparing to unpack .../108-libdrm-radeon1_2.4.121-2_amd64.deb ... 159s Unpacking libdrm-radeon1:amd64 (2.4.121-2) ... 159s Selecting previously unselected package libllvm17t64:amd64. 159s Preparing to unpack .../109-libllvm17t64_1%3a17.0.6-12_amd64.deb ... 159s Unpacking libllvm17t64:amd64 (1:17.0.6-12) ... 160s Selecting previously unselected package libgl1-mesa-dri:amd64. 160s Preparing to unpack .../110-libgl1-mesa-dri_24.0.9-0ubuntu2_amd64.deb ... 160s Unpacking libgl1-mesa-dri:amd64 (24.0.9-0ubuntu2) ... 160s Selecting previously unselected package libglx-mesa0:amd64. 160s Preparing to unpack .../111-libglx-mesa0_24.0.9-0ubuntu2_amd64.deb ... 160s Unpacking libglx-mesa0:amd64 (24.0.9-0ubuntu2) ... 160s Selecting previously unselected package libglx0:amd64. 160s Preparing to unpack .../112-libglx0_1.7.0-1build1_amd64.deb ... 160s Unpacking libglx0:amd64 (1.7.0-1build1) ... 160s Selecting previously unselected package libgl1:amd64. 160s Preparing to unpack .../113-libgl1_1.7.0-1build1_amd64.deb ... 160s Unpacking libgl1:amd64 (1.7.0-1build1) ... 161s Selecting previously unselected package libasound2-data. 161s Preparing to unpack .../114-libasound2-data_1.2.12-1_all.deb ... 161s Unpacking libasound2-data (1.2.12-1) ... 161s Selecting previously unselected package libasound2t64:amd64. 161s Preparing to unpack .../115-libasound2t64_1.2.12-1_amd64.deb ... 161s Unpacking libasound2t64:amd64 (1.2.12-1) ... 161s Selecting previously unselected package libgif7:amd64. 161s Preparing to unpack .../116-libgif7_5.2.2-1ubuntu1_amd64.deb ... 161s Unpacking libgif7:amd64 (5.2.2-1ubuntu1) ... 161s Selecting previously unselected package x11-common. 161s Preparing to unpack .../117-x11-common_1%3a7.7+23ubuntu3_all.deb ... 161s Unpacking x11-common (1:7.7+23ubuntu3) ... 161s Selecting previously unselected package libxtst6:amd64. 161s Preparing to unpack .../118-libxtst6_2%3a1.2.3-1.1build1_amd64.deb ... 161s Unpacking libxtst6:amd64 (2:1.2.3-1.1build1) ... 161s Selecting previously unselected package openjdk-21-jre:amd64. 161s Preparing to unpack .../119-openjdk-21-jre_21.0.4+7-1ubuntu2_amd64.deb ... 161s Unpacking openjdk-21-jre:amd64 (21.0.4+7-1ubuntu2) ... 161s Selecting previously unselected package default-jre. 161s Preparing to unpack .../120-default-jre_2%3a1.21-75+exp1_amd64.deb ... 161s Unpacking default-jre (2:1.21-75+exp1) ... 161s Selecting previously unselected package cgview. 161s Preparing to unpack .../121-cgview_0.0.20100111-7_all.deb ... 161s Unpacking cgview (0.0.20100111-7) ... 161s Selecting previously unselected package ncbi-data. 161s Preparing to unpack .../122-ncbi-data_6.1.20170106+dfsg2-3_all.deb ... 161s Unpacking ncbi-data (6.1.20170106+dfsg2-3) ... 161s Selecting previously unselected package libmbedcrypto7t64:amd64. 161s Preparing to unpack .../123-libmbedcrypto7t64_2.28.8-1_amd64.deb ... 161s Unpacking libmbedcrypto7t64:amd64 (2.28.8-1) ... 161s Selecting previously unselected package libmbedx509-1t64:amd64. 161s Preparing to unpack .../124-libmbedx509-1t64_2.28.8-1_amd64.deb ... 161s Unpacking libmbedx509-1t64:amd64 (2.28.8-1) ... 161s Selecting previously unselected package libmbedtls14t64:amd64. 161s Preparing to unpack .../125-libmbedtls14t64_2.28.8-1_amd64.deb ... 161s Unpacking libmbedtls14t64:amd64 (2.28.8-1) ... 161s Selecting previously unselected package ncbi-blast+. 161s Preparing to unpack .../126-ncbi-blast+_2.16.0+ds-3_amd64.deb ... 161s Unpacking ncbi-blast+ (2.16.0+ds-3) ... 161s Selecting previously unselected package ncbi-blast+-legacy. 161s Preparing to unpack .../127-ncbi-blast+-legacy_2.16.0+ds-3_all.deb ... 161s Unpacking ncbi-blast+-legacy (2.16.0+ds-3) ... 161s Selecting previously unselected package imagemagick-6.q16. 161s Preparing to unpack .../128-imagemagick-6.q16_8%3a6.9.13.12+dfsg1-1_amd64.deb ... 161s Unpacking imagemagick-6.q16 (8:6.9.13.12+dfsg1-1) ... 161s Selecting previously unselected package imagemagick. 161s Preparing to unpack .../129-imagemagick_8%3a6.9.13.12+dfsg1-1_amd64.deb ... 161s Unpacking imagemagick (8:6.9.13.12+dfsg1-1) ... 161s Selecting previously unselected package liberror-perl. 161s Preparing to unpack .../130-liberror-perl_0.17029-2_all.deb ... 161s Unpacking liberror-perl (0.17029-2) ... 161s Selecting previously unselected package libtie-ixhash-perl. 161s Preparing to unpack .../131-libtie-ixhash-perl_1.23-4_all.deb ... 161s Unpacking libtie-ixhash-perl (1.23-4) ... 161s Selecting previously unselected package libencode-locale-perl. 161s Preparing to unpack .../132-libencode-locale-perl_1.05-3_all.deb ... 161s Unpacking libencode-locale-perl (1.05-3) ... 161s Selecting previously unselected package libtimedate-perl. 161s Preparing to unpack .../133-libtimedate-perl_2.3300-2_all.deb ... 161s Unpacking libtimedate-perl (2.3300-2) ... 161s Selecting previously unselected package libhttp-date-perl. 161s Preparing to unpack .../134-libhttp-date-perl_6.06-1_all.deb ... 161s Unpacking libhttp-date-perl (6.06-1) ... 161s Selecting previously unselected package libfile-listing-perl. 161s Preparing to unpack .../135-libfile-listing-perl_6.16-1_all.deb ... 161s Unpacking libfile-listing-perl (6.16-1) ... 161s Selecting previously unselected package libhtml-tagset-perl. 161s Preparing to unpack .../136-libhtml-tagset-perl_3.24-1_all.deb ... 161s Unpacking libhtml-tagset-perl (3.24-1) ... 161s Selecting previously unselected package liburi-perl. 161s Preparing to unpack .../137-liburi-perl_5.28-1_all.deb ... 161s Unpacking liburi-perl (5.28-1) ... 161s Selecting previously unselected package libhtml-parser-perl:amd64. 161s Preparing to unpack .../138-libhtml-parser-perl_3.82-1_amd64.deb ... 161s Unpacking libhtml-parser-perl:amd64 (3.82-1) ... 161s Selecting previously unselected package libhtml-tree-perl. 161s Preparing to unpack .../139-libhtml-tree-perl_5.07-3_all.deb ... 161s Unpacking libhtml-tree-perl (5.07-3) ... 161s Selecting previously unselected package libclone-perl:amd64. 161s Preparing to unpack .../140-libclone-perl_0.46-1build3_amd64.deb ... 161s Unpacking libclone-perl:amd64 (0.46-1build3) ... 161s Selecting previously unselected package libio-html-perl. 161s Preparing to unpack .../141-libio-html-perl_1.004-3_all.deb ... 161s Unpacking libio-html-perl (1.004-3) ... 161s Selecting previously unselected package liblwp-mediatypes-perl. 161s Preparing to unpack .../142-liblwp-mediatypes-perl_6.04-2_all.deb ... 161s Unpacking liblwp-mediatypes-perl (6.04-2) ... 161s Selecting previously unselected package libhttp-message-perl. 161s Preparing to unpack .../143-libhttp-message-perl_6.46-1ubuntu1_all.deb ... 161s Unpacking libhttp-message-perl (6.46-1ubuntu1) ... 161s Selecting previously unselected package libhttp-cookies-perl. 161s Preparing to unpack .../144-libhttp-cookies-perl_6.11-1_all.deb ... 161s Unpacking libhttp-cookies-perl (6.11-1) ... 161s Selecting previously unselected package libhttp-negotiate-perl. 161s Preparing to unpack .../145-libhttp-negotiate-perl_6.01-2_all.deb ... 161s Unpacking libhttp-negotiate-perl (6.01-2) ... 161s Selecting previously unselected package perl-openssl-defaults:amd64. 161s Preparing to unpack .../146-perl-openssl-defaults_7build3_amd64.deb ... 161s Unpacking perl-openssl-defaults:amd64 (7build3) ... 161s Selecting previously unselected package libnet-ssleay-perl:amd64. 162s Preparing to unpack .../147-libnet-ssleay-perl_1.94-1build4_amd64.deb ... 162s Unpacking libnet-ssleay-perl:amd64 (1.94-1build4) ... 162s Selecting previously unselected package libio-socket-ssl-perl. 162s Preparing to unpack .../148-libio-socket-ssl-perl_2.088-1_all.deb ... 162s Unpacking libio-socket-ssl-perl (2.088-1) ... 162s Selecting previously unselected package libnet-http-perl. 162s Preparing to unpack .../149-libnet-http-perl_6.23-1_all.deb ... 162s Unpacking libnet-http-perl (6.23-1) ... 162s Selecting previously unselected package liblwp-protocol-https-perl. 162s Preparing to unpack .../150-liblwp-protocol-https-perl_6.14-1_all.deb ... 162s Unpacking liblwp-protocol-https-perl (6.14-1) ... 162s Selecting previously unselected package libtry-tiny-perl. 162s Preparing to unpack .../151-libtry-tiny-perl_0.31-2_all.deb ... 162s Unpacking libtry-tiny-perl (0.31-2) ... 162s Selecting previously unselected package libwww-robotrules-perl. 162s Preparing to unpack .../152-libwww-robotrules-perl_6.02-1_all.deb ... 162s Unpacking libwww-robotrules-perl (6.02-1) ... 162s Selecting previously unselected package libwww-perl. 162s Preparing to unpack .../153-libwww-perl_6.77-1_all.deb ... 162s Unpacking libwww-perl (6.77-1) ... 162s Selecting previously unselected package cct. 162s Preparing to unpack .../154-cct_1%3a1.0.3-1_all.deb ... 162s Unpacking cct (1:1.0.3-1) ... 162s Selecting previously unselected package cct-examples. 162s Preparing to unpack .../155-cct-examples_1%3a1.0.3-1_all.deb ... 162s Unpacking cct-examples (1:1.0.3-1) ... 162s Selecting previously unselected package autopkgtest-satdep. 162s Preparing to unpack .../156-1-autopkgtest-satdep.deb ... 162s Unpacking autopkgtest-satdep (0) ... 163s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 163s Setting up liblcms2-2:amd64 (2.14-2build1) ... 163s Setting up ncbi-data (6.1.20170106+dfsg2-3) ... 163s Setting up libpixman-1-0:amd64 (0.42.2-1build1) ... 163s Setting up libx11-xcb1:amd64 (2:1.8.7-1build1) ... 163s Setting up libpciaccess0:amd64 (0.17-3build1) ... 163s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 165s Regenerating fonts cache... done. 165s Setting up imagemagick-6-common (8:6.9.13.12+dfsg1-1) ... 165s Setting up libdrm-nouveau2:amd64 (2.4.121-2) ... 165s Setting up libtie-ixhash-perl (1.23-4) ... 165s Setting up libxdamage1:amd64 (1:1.1.6-1build1) ... 165s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 165s Setting up hicolor-icon-theme (0.18-1) ... 165s Setting up libxi6:amd64 (2:1.8.1-1build1) ... 165s Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ... 165s Setting up java-common (0.75+exp1) ... 165s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 165s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 165s Setting up libtest-deep-perl (1.204-1) ... 165s Setting up libxcb-render0:amd64 (1.17.0-2) ... 165s Setting up libclone-perl:amd64 (0.46-1build3) ... 165s Setting up libalgorithm-diff-perl (1.201-1) ... 165s Setting up libdrm-radeon1:amd64 (2.4.121-2) ... 165s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 165s Setting up libhtml-tagset-perl (3.24-1) ... 165s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 165s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 165s Setting up unzip (6.0-28ubuntu5) ... 165s Setting up libdrm-intel1:amd64 (2.4.121-2) ... 165s Setting up liblwp-mediatypes-perl (6.04-2) ... 165s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 165s Setting up x11-common (1:7.7+23ubuntu3) ... 165s Setting up libtry-tiny-perl (0.31-2) ... 165s Setting up perl-openssl-defaults:amd64 (7build3) ... 165s Setting up libencode-locale-perl (1.05-3) ... 165s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 165s Setting up libcairo2:amd64 (1.18.0-3build1) ... 165s Setting up libcolord2:amd64 (1.4.7-1build2) ... 165s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 165s Setting up libxcb-present0:amd64 (1.17.0-2) ... 165s Setting up liberror-perl (0.17029-2) ... 165s Setting up libdconf1:amd64 (0.40.0-4build2) ... 165s Setting up libasound2-data (1.2.12-1) ... 165s Setting up libio-string-perl (1.08-4) ... 165s Setting up libclass-data-inheritable-perl (0.08-3) ... 165s Setting up libasound2t64:amd64 (1.2.12-1) ... 165s Setting up libllvm17t64:amd64 (1:17.0.6-12) ... 165s Setting up libepoxy0:amd64 (1.5.10-1build1) ... 165s Setting up libtext-diff-perl (1.45-2) ... 165s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ... 165s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 165s Setting up libapache-pom-java (29-2) ... 165s Setting up libavahi-common-data:amd64 (0.8-13ubuntu6) ... 165s Setting up libatspi2.0-0t64:amd64 (2.52.0-1build1) ... 165s Setting up libxinerama1:amd64 (2:1.1.4-3build1) ... 165s Setting up libxml-commons-resolver1.1-java (1.2-11) ... 165s Setting up libio-html-perl (1.004-3) ... 165s Setting up libxrandr2:amd64 (2:1.5.4-1) ... 165s Setting up libpcsclite1:amd64 (2.2.3-1) ... 165s Setting up libltdl7:amd64 (2.4.7-7build1) ... 165s Setting up libfftw3-double3:amd64 (3.3.10-1ubuntu3) ... 165s Setting up libglapi-mesa:amd64 (24.0.9-0ubuntu2) ... 165s Setting up libraw23t64:amd64 (0.21.2-2.1build1) ... 165s Setting up libvulkan1:amd64 (1.3.283.0-1) ... 165s Setting up libcapture-tiny-perl (0.48-2) ... 165s Setting up libtimedate-perl (2.3300-2) ... 165s Setting up libxcb-dri2-0:amd64 (1.17.0-2) ... 165s Setting up libgif7:amd64 (5.2.2-1ubuntu1) ... 165s Setting up libdata-stag-perl (0.14-3) ... 165s Setting up liblqr-1-0:amd64 (0.4.2-2.1build2) ... 165s Setting up libxshmfence1:amd64 (1.3-1build5) ... 165s Setting up at-spi2-common (2.52.0-1build1) ... 165s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 165s Setting up libxml-commons-external-java (1.4.01-6) ... 165s Setting up libjargs-java (1.0.0-5) ... 165s Setting up libsub-uplevel-perl (0.2800-3) ... 165s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 165s Setting up libthai-data (0.1.29-2build1) ... 165s Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1) ... 165s Setting up libdevel-stacktrace-perl (2.0500-1) ... 165s Setting up libcairo-gobject2:amd64 (1.18.0-3build1) ... 165s Setting up libwayland-egl1:amd64 (1.22.0-2.1build1) ... 165s Setting up libbio-perl-perl (1.7.8-1) ... 165s Setting up ca-certificates-java (20240118) ... 165s No JRE found. Skipping Java certificates setup. 165s Setting up libxerces2-java (2.12.2-1) ... 165s Setting up libjaxp1.3-java (1.3.05-6) ... 165s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 165s Setting up libxcomposite1:amd64 (1:0.4.5-1build3) ... 165s Setting up liburi-perl (5.28-1) ... 165s Setting up libdrm-amdgpu1:amd64 (2.4.121-2) ... 165s Setting up libwayland-client0:amd64 (1.22.0-2.1build1) ... 165s Setting up libnet-ssleay-perl:amd64 (1.94-1build4) ... 165s Setting up gtk-update-icon-cache (3.24.43-1ubuntu1) ... 165s Setting up libhttp-date-perl (6.06-1) ... 165s Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... 165s Setting up java-wrappers (0.4) ... 165s Setting up libatk1.0-0t64:amd64 (2.52.0-1build1) ... 165s Setting up libfile-listing-perl (6.16-1) ... 165s Setting up openjdk-21-jre-headless:amd64 (21.0.4+7-1ubuntu2) ... 165s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode 165s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 165s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 165s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 165s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 165s Setting up libxtst6:amd64 (2:1.2.3-1.1build1) ... 165s Setting up libtest-warn-perl (0.37-2) ... 165s Setting up libxcursor1:amd64 (1:1.2.2-1) ... 165s Setting up libgl1-mesa-dri:amd64 (24.0.9-0ubuntu2) ... 165s Setting up libcommons-parent-java (56-1) ... 165s Setting up libavahi-common3:amd64 (0.8-13ubuntu6) ... 165s Setting up libtest-differences-perl (0.71-1) ... 165s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 165s Setting up libnet-http-perl (6.23-1) ... 165s Setting up libmagickcore-6.q16-7t64:amd64 (8:6.9.13.12+dfsg1-1) ... 165s Setting up dconf-service (0.40.0-4build2) ... 165s Setting up libexception-class-perl (1.45-1) ... 165s Setting up libcommons-lang-java (2.6-10) ... 165s Setting up libmagickwand-6.q16-7t64:amd64 (8:6.9.13.12+dfsg1-1) ... 165s Setting up libthai0:amd64 (0.1.29-2build1) ... 165s Setting up libtest-exception-perl (0.43-3) ... 165s Setting up imagemagick-6.q16 (8:6.9.13.12+dfsg1-1) ... 165s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode 165s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode 165s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode 165s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode 165s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode 165s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode 165s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode 165s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode 165s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode 165s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode 165s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode 165s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode 165s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode 165s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode 165s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode 165s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode 165s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode 165s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode 165s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode 165s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode 165s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode 165s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode 165s Setting up libwww-robotrules-perl (6.02-1) ... 165s Setting up libmbedtls14t64:amd64 (2.28.8-1) ... 165s Setting up libwayland-cursor0:amd64 (1.22.0-2.1build1) ... 165s Setting up libhtml-parser-perl:amd64 (3.82-1) ... 165s Setting up libavahi-client3:amd64 (0.8-13ubuntu6) ... 165s Setting up libio-socket-ssl-perl (2.088-1) ... 165s Setting up libhttp-message-perl (6.46-1ubuntu1) ... 165s Setting up libatk-bridge2.0-0t64:amd64 (2.52.0-1build1) ... 165s Setting up libhttp-negotiate-perl (6.01-2) ... 165s Setting up libglx-mesa0:amd64 (24.0.9-0ubuntu2) ... 165s Setting up libglx0:amd64 (1.7.0-1build1) ... 165s Setting up dconf-gsettings-backend:amd64 (0.40.0-4build2) ... 165s Setting up libhttp-cookies-perl (6.11-1) ... 165s Setting up libtest-most-perl (0.38-1) ... 165s Setting up libcommons-io-java (2.16.1-1) ... 165s Setting up libhtml-tree-perl (5.07-3) ... 165s Setting up libpango-1.0-0:amd64 (1.54.0+ds-1) ... 165s Setting up libxmlgraphics-commons-java (2.8-2) ... 165s Setting up ncbi-blast+ (2.16.0+ds-3) ... 165s Setting up libgl1:amd64 (1.7.0-1build1) ... 165s Setting up imagemagick (8:6.9.13.12+dfsg1-1) ... 165s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... 165s Setting up libcups2t64:amd64 (2.4.7-1.2ubuntu9) ... 165s Setting up libgtk-3-common (3.24.43-1ubuntu1) ... 165s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... 165s Setting up bioperl (1.7.8-1) ... 165s Setting up ncbi-blast+-legacy (2.16.0+ds-3) ... 165s Setting up libbatik-java (1.17+dfsg-1) ... 165s Setting up adwaita-icon-theme (46.0-1) ... 165s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 165s Setting up libwww-perl (6.77-1) ... 165s Setting up humanity-icon-theme (0.6.16) ... 166s Setting up liblwp-protocol-https-perl (6.14-1) ... 166s Setting up ubuntu-mono (24.04-0ubuntu1) ... 166s Processing triggers for man-db (2.12.1-2) ... 167s Processing triggers for libglib2.0-0t64:amd64 (2.80.4-1ubuntu1) ... 167s Setting up libgtk-3-0t64:amd64 (3.24.43-1ubuntu1) ... 167s Processing triggers for libc-bin (2.39-0ubuntu9) ... 167s Processing triggers for ca-certificates-java (20240118) ... 167s Adding debian:ACCVRAIZ1.pem 167s Adding debian:AC_RAIZ_FNMT-RCM.pem 167s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 167s Adding debian:ANF_Secure_Server_Root_CA.pem 167s Adding debian:Actalis_Authentication_Root_CA.pem 167s Adding debian:AffirmTrust_Commercial.pem 167s Adding debian:AffirmTrust_Networking.pem 167s Adding debian:AffirmTrust_Premium.pem 167s Adding debian:AffirmTrust_Premium_ECC.pem 167s Adding debian:Amazon_Root_CA_1.pem 167s Adding debian:Amazon_Root_CA_2.pem 167s Adding debian:Amazon_Root_CA_3.pem 167s Adding debian:Amazon_Root_CA_4.pem 167s Adding debian:Atos_TrustedRoot_2011.pem 167s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 167s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 167s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 167s Adding debian:BJCA_Global_Root_CA1.pem 167s Adding debian:BJCA_Global_Root_CA2.pem 167s Adding debian:Baltimore_CyberTrust_Root.pem 167s Adding debian:Buypass_Class_2_Root_CA.pem 167s Adding debian:Buypass_Class_3_Root_CA.pem 167s Adding debian:CA_Disig_Root_R2.pem 167s Adding debian:CFCA_EV_ROOT.pem 167s Adding debian:COMODO_Certification_Authority.pem 167s Adding debian:COMODO_ECC_Certification_Authority.pem 167s Adding debian:COMODO_RSA_Certification_Authority.pem 167s Adding debian:Certainly_Root_E1.pem 167s Adding debian:Certainly_Root_R1.pem 167s Adding debian:Certigna.pem 167s Adding debian:Certigna_Root_CA.pem 167s Adding debian:Certum_EC-384_CA.pem 167s Adding debian:Certum_Trusted_Network_CA.pem 167s Adding debian:Certum_Trusted_Network_CA_2.pem 167s Adding debian:Certum_Trusted_Root_CA.pem 167s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 167s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 167s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 167s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 167s Adding debian:Comodo_AAA_Services_root.pem 167s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 167s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 167s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 167s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 167s Adding debian:DigiCert_Assured_ID_Root_CA.pem 167s Adding debian:DigiCert_Assured_ID_Root_G2.pem 167s Adding debian:DigiCert_Assured_ID_Root_G3.pem 167s Adding debian:DigiCert_Global_Root_CA.pem 167s Adding debian:DigiCert_Global_Root_G2.pem 167s Adding debian:DigiCert_Global_Root_G3.pem 167s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 167s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 167s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 167s Adding debian:DigiCert_Trusted_Root_G4.pem 167s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 167s Adding debian:Entrust_Root_Certification_Authority.pem 167s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 167s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 167s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 167s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 167s Adding debian:GLOBALTRUST_2020.pem 167s Adding debian:GTS_Root_R1.pem 167s Adding debian:GTS_Root_R2.pem 167s Adding debian:GTS_Root_R3.pem 167s Adding debian:GTS_Root_R4.pem 167s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 167s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 167s Adding debian:GlobalSign_Root_CA.pem 167s Adding debian:GlobalSign_Root_CA_-_R3.pem 167s Adding debian:GlobalSign_Root_CA_-_R6.pem 167s Adding debian:GlobalSign_Root_E46.pem 167s Adding debian:GlobalSign_Root_R46.pem 167s Adding debian:Go_Daddy_Class_2_CA.pem 168s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 168s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 168s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 168s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 168s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 168s Adding debian:HiPKI_Root_CA_-_G1.pem 168s Adding debian:Hongkong_Post_Root_CA_3.pem 168s Adding debian:ISRG_Root_X1.pem 168s Adding debian:ISRG_Root_X2.pem 168s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 168s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 168s Adding debian:Izenpe.com.pem 168s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 168s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 168s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 168s Adding debian:NAVER_Global_Root_Certification_Authority.pem 168s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 168s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 168s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 168s Adding debian:QuoVadis_Root_CA_1_G3.pem 168s Adding debian:QuoVadis_Root_CA_2.pem 168s Adding debian:QuoVadis_Root_CA_2_G3.pem 168s Adding debian:QuoVadis_Root_CA_3.pem 168s Adding debian:QuoVadis_Root_CA_3_G3.pem 168s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 168s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 168s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 168s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 168s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 168s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 168s Adding debian:SZAFIR_ROOT_CA2.pem 168s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 168s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 168s Adding debian:SecureSign_RootCA11.pem 168s Adding debian:SecureTrust_CA.pem 168s Adding debian:Secure_Global_CA.pem 168s Adding debian:Security_Communication_ECC_RootCA1.pem 168s Adding debian:Security_Communication_RootCA2.pem 168s Adding debian:Security_Communication_RootCA3.pem 168s Adding debian:Security_Communication_Root_CA.pem 168s Adding debian:Starfield_Class_2_CA.pem 168s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 168s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 168s Adding debian:SwissSign_Gold_CA_-_G2.pem 168s Adding debian:SwissSign_Silver_CA_-_G2.pem 168s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 168s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 168s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 168s Adding debian:TWCA_Global_Root_CA.pem 168s Adding debian:TWCA_Root_Certification_Authority.pem 168s Adding debian:TeliaSonera_Root_CA_v1.pem 168s Adding debian:Telia_Root_CA_v2.pem 168s Adding debian:TrustAsia_Global_Root_CA_G3.pem 168s Adding debian:TrustAsia_Global_Root_CA_G4.pem 168s Adding debian:Trustwave_Global_Certification_Authority.pem 168s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 168s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 168s Adding debian:TunTrust_Root_CA.pem 168s Adding debian:UCA_Extended_Validation_Root.pem 168s Adding debian:UCA_Global_G2_Root.pem 168s Adding debian:USERTrust_ECC_Certification_Authority.pem 168s Adding debian:USERTrust_RSA_Certification_Authority.pem 168s Adding debian:XRamp_Global_CA_Root.pem 168s Adding debian:certSIGN_ROOT_CA.pem 168s Adding debian:certSIGN_Root_CA_G2.pem 168s Adding debian:e-Szigno_Root_CA_2017.pem 168s Adding debian:ePKI_Root_Certification_Authority.pem 168s Adding debian:emSign_ECC_Root_CA_-_C3.pem 168s Adding debian:emSign_ECC_Root_CA_-_G3.pem 168s Adding debian:emSign_Root_CA_-_C1.pem 168s Adding debian:emSign_Root_CA_-_G1.pem 168s Adding debian:vTrus_ECC_Root_CA.pem 168s Adding debian:vTrus_Root_CA.pem 168s done. 168s Setting up openjdk-21-jre:amd64 (21.0.4+7-1ubuntu2) ... 168s Setting up default-jre-headless (2:1.21-75+exp1) ... 168s Setting up default-jre (2:1.21-75+exp1) ... 168s Setting up cgview (0.0.20100111-7) ... 168s Setting up cct (1:1.0.3-1) ... 168s Setting up cct-examples (1:1.0.3-1) ... 168s Setting up autopkgtest-satdep (0) ... 180s (Reading database ... 91962 files and directories currently installed.) 180s Removing autopkgtest-satdep (0) ... 181s autopkgtest [01:30:17]: test run-unit-test: [----------------------- 181s 'Check environment' test passed 181s Copying and extracting COG files 182s Preparing COG BLAST database 186s COG BLAST database created 186s Processing project 'test_blastn' 186s Processing project 'test_blastn' using configuration 'project_settings.conf' 186s [Saturday July 27 01:30:22 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_blastn/project_settings.conf. 186s [Saturday July 27 01:30:22 2024] [Notice] Splitting the reference genome sequence in /var/tmp/cct/test_output/test_blastn/reference_genome for BLAST searches. 186s [Saturday July 27 01:30:22 2024] [Notice] Reference genome sequence has been split and written to /var/tmp/cct/test_output/test_blastn/reference_genome/split. 186s [Saturday July 27 01:30:22 2024] [Notice] Splitting the comparison genome sequences in /var/tmp/cct/test_output/test_blastn/comparison_genomes for BLAST searches. 186s [Saturday July 27 01:30:22 2024] [Notice] Comparison genome sequences have been split and written to /var/tmp/cct/test_output/test_blastn/comparison_genomes/split. 186s [Saturday July 27 01:30:22 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_blastn/comparison_genomes/split. 187s [Saturday July 27 01:30:23 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_blastn/blast/blast_db. 187s [Saturday July 27 01:30:23 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_blastn/reference_genome/split and databases in /var/tmp/cct/test_output/test_blastn/blast/blast_db. 187s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 187s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Writing HSP to file. 187s Writing HSP to file. 187s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn to view the BLAST results. 187s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 187s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Writing HSP to file. 187s Writing HSP to file. 187s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn to view the BLAST results. 187s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 187s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Writing HSP to file. 187s Writing HSP to file. 187s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn to view the BLAST results. 187s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 187s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Writing HSP to file. 187s Writing HSP to file. 187s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn to view the BLAST results. 187s [Saturday July 27 01:30:23 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_blastn/blast/blast_results_local. 187s [Saturday July 27 01:30:23 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_blastn/reference_genome. 187s [Saturday July 27 01:30:23 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_blastn/features. 187s [Saturday July 27 01:30:23 2024] [Notice] Creating CGView XML files. 187s [Saturday July 27 01:30:23 2024] [Notice] The following BLAST results will be drawn, from outside to center: 187s [Saturday July 27 01:30:23 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn 187s [Saturday July 27 01:30:23 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn 187s [Saturday July 27 01:30:23 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn 187s [Saturday July 27 01:30:23 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn 188s Creating XML for feature sets on the outside of the backbone circle. 188s Feature sets written first are drawn closest to the backbone circle. 188s Creating XML for ORFs that are in reading frame +1. 188s Creating XML for ORFs that are in reading frame +2. 188s Creating XML for ORFs that are in reading frame +3. 188s Creating XML for feature sets on the inside of the backbone circle. 188s Feature sets written first are drawn closest to the backbone circle. 188s Creating XML for ORFs that are in reading frame -1. 188s Creating XML for ORFs that are in reading frame -2. 188s Creating XML for ORFs that are in reading frame -3. 188s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn. 188s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn. 188s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn. 188s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn. 188s Creating XML for GC content information. 188s Plotting GC content using a window size of 500 and a step of 1. 188s The maximum GC content value is 0.5768. 188s The minimum GC content value is 0.4311. 188s The average GC content value is 0.5051. 188s GC content will be scaled based on the maximum and minimum values. 188s GC content will be plotted as the deviation from the average value. 188s Creating XML for GC skew information. 188s Plotting GC skew using a window size of 500 and a step of 1. 188s The maximum GC skew value is 0.1587. 188s The minimum GC skew value is -0.2263. 188s The average GC skew value is -0.0036. 188s GC skew will be scaled based on the maximum and minimum values. 188s GC skew will be plotted as the deviation from the average value. 188s CGView XML file complete. 188s The recommended CGView command is: 188s ---------------------------------- 188s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_blastn/maps/cgview_xml/test_blastn_project_settings.conf_medium.xml -o map.png 188s Success! 188s The following key-values were used: 188s ----------------------------------- 188s arrowheadLength=6 188s average=T 188s atColorNeg=rgb(51,51,51) 188s atColorPos=rgb(51,51,51) 188s at_content=F 188s atSkewColorNeg=rgb(0,0,153) 188s atSkewColorPos=rgb(153,153,0) 188s at_skew=F 188s backboneColor=rgb(102,102,102) 188s backboneRadius=1000 188s backboneThickness=8 188s backgroundColor=white 188s blast_divider_ruler=F 188s blastRulerColor=rgb(255,165,0) 188s borderColor=black 188s combined_orfs=F 188s details=T 188s draw_divider_rings=T 188s featureOpacity=0.5 188s featureOpacityOther=0.5 188s featureSlotSpacing=6 188s featureThickness=24.27 188s featureThicknessPlot=145.64 188s feature_labels=F 188s gcColorNeg=rgb(0,0,0) 188s gcColorPos=rgb(0,0,0) 188s gc_content=T 188s gcSkewColorNeg=rgb(153,0,153) 188s gcSkewColorPos=rgb(0,153,0) 188s gc_skew=T 188s gene_decoration=arrow 188s gene_labels=F 188s global_label=true 188s height=3000 188s hit_labels=F 188s labelFontSize=15 188s labelPlacementQuality=good 188s labelLineLength=200 188s labelLineThickness=4 188s legend=T 188s legendFontSize=20 188s orf_labels=F 188s maxLabelLength=20 188s maxLegendLength=30 188s maxTitleLength=50 188s minimumFeatureLength=0.2 188s moveInnerLabelsToOuter=false 188s orfColor=rgb(204,0,0) 188s orfs=T 188s orf_size=25 188s otherColor=rgb(51,51,51) 188s parse_reading_frame=F 188s proteinColor=rgb(0,0,153) 188s reading_frames=F 188s rRNAColor=rgb(153,0,153) 188s rulerFontColor=rgb(0,0,0) 188s rulerFontSize=30 188s rulerPadding=40 188s scale=T 188s scale_blast=T 188s show_sequence_features=T 188s show_queries=F 188s startColor=rgb(153,0,153) 188s starts=ttg|ctg|att|atc|ata|atg|gtg 188s step=1 188s stopColor=rgb(204,0,0) 188s stops=taa|tag|tga 188s title= 188s titleFontSize=80 188s tickColor=rgb(0,51,0) 188s tickLength=15 188s tickThickness=6 188s tick_density=0.166666666666667 188s tRNAColor=rgb(153,0,0) 188s useInnerLabels=true 188s use_opacity=F 188s width=3000 188s window=500 188s ----------------------------------- 188s [Saturday July 27 01:30:24 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_blastn/maps/cgview_xml. 188s [Saturday July 27 01:30:24 2024] [Notice] Creating CGView maps. 188s Parsing XML input. 190s Drawing features.......................... 190s Positioning and drawing 0 labels.......................... 190s 0 labels were removed. 190s Drawing tick marks. 190s Drawing legends. 190s The map has been drawn. 190s Writing picture to /var/tmp/cct/test_output/test_blastn/maps/test_blastn_project_settings.png 191s Writing HTML to /var/tmp/cct/test_output/test_blastn/maps/test_blastn_project_settings.html 191s [Saturday July 27 01:30:27 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_blastn/maps. 191s Processing project 'test_plots' 191s Processing project 'test_plots' using configuration 'project_settings.conf' 191s [Saturday July 27 01:30:27 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_plots/project_settings.conf. 191s [Saturday July 27 01:30:27 2024] [Notice] Creating CGView XML files. 191s Creating XML for feature sets on the outside of the backbone circle. 191s Feature sets written first are drawn closest to the backbone circle. 191s Creating XML for ORFs that are in reading frame +1. 191s Creating XML for ORFs that are in reading frame +2. 191s Creating XML for ORFs that are in reading frame +3. 191s Creating XML for feature sets on the inside of the backbone circle. 191s Feature sets written first are drawn closest to the backbone circle. 191s Creating XML for ORFs that are in reading frame -1. 191s Creating XML for ORFs that are in reading frame -2. 191s Creating XML for ORFs that are in reading frame -3. 191s Creating XML for GC content information. 191s Plotting GC content using a window size of 50 and a step of 1. 191s The maximum GC content value is 1.0000. 191s The minimum GC content value is 0.0000. 191s The average GC content value is 0.6000. 191s GC content will be scaled based on the maximum and minimum values. 191s GC content will be plotted as the deviation from the average value. 191s Creating XML for GC skew information. 191s Plotting GC skew using a window size of 50 and a step of 1. 191s The maximum GC skew value is 1.0000. 191s The minimum GC skew value is -1.0000. 191s The average GC skew value is -0.3333. 191s GC skew will be scaled based on the maximum and minimum values. 191s GC skew will be plotted as the deviation from the average value. 191s CGView XML file complete. 191s The recommended CGView command is: 191s ---------------------------------- 191s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_plots/maps/cgview_xml/test_plots_project_settings.conf_medium.xml -o map.png 191s Success! 191s The following key-values were used: 191s ----------------------------------- 191s arrowheadLength=6 191s average=T 191s atColorNeg=rgb(51,51,51) 191s atColorPos=rgb(51,51,51) 191s at_content=F 191s atSkewColorNeg=rgb(0,0,153) 191s atSkewColorPos=rgb(153,153,0) 191s at_skew=F 191s backboneColor=rgb(102,102,102) 191s backboneRadius=1000 191s backboneThickness=8 191s backgroundColor=white 191s blast_divider_ruler=F 191s blastRulerColor=rgb(255,165,0) 191s borderColor=black 191s combined_orfs=F 191s details=T 191s draw_divider_rings=T 191s featureOpacity=0.5 191s featureOpacityOther=0.5 191s featureSlotSpacing=6 191s featureThickness=30 191s featureThicknessPlot=186.00 191s feature_labels=F 191s gcColorNeg=rgb(0,0,0) 191s gcColorPos=rgb(0,0,0) 191s gc_content=T 191s gcSkewColorNeg=rgb(153,0,153) 191s gcSkewColorPos=rgb(0,153,0) 191s gc_skew=T 191s gene_decoration=arrow 191s gene_labels=F 191s global_label=true 191s height=3000 191s hit_labels=F 191s labelFontSize=15 191s labelPlacementQuality=good 191s labelLineLength=200 191s labelLineThickness=4 191s legend=T 191s legendFontSize=20 191s orf_labels=F 191s maxLabelLength=20 191s maxLegendLength=30 191s maxTitleLength=50 191s minimumFeatureLength=0.2 191s moveInnerLabelsToOuter=false 191s orfColor=rgb(204,0,0) 191s orfs=T 191s orf_size=25 191s otherColor=rgb(51,51,51) 191s parse_reading_frame=F 191s proteinColor=rgb(0,0,153) 191s reading_frames=F 191s rRNAColor=rgb(153,0,153) 191s rulerFontColor=rgb(0,0,0) 191s rulerFontSize=30 191s rulerPadding=40 191s scale=T 191s scale_blast=T 191s show_sequence_features=T 191s show_queries=F 191s startColor=rgb(153,0,153) 191s starts=ttg|ctg|att|atc|ata|atg|gtg 191s step=1 191s stopColor=rgb(204,0,0) 191s stops=taa|tag|tga 191s title= 191s titleFontSize=80 191s tickColor=rgb(0,51,0) 191s tickLength=15 191s tickThickness=6 191s tick_density=0.166666666666667 191s tRNAColor=rgb(153,0,0) 191s useInnerLabels=true 191s use_opacity=F 191s width=3000 191s window=50 191s ----------------------------------- 191s [Saturday July 27 01:30:27 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_plots/maps/cgview_xml. 191s [Saturday July 27 01:30:27 2024] [Notice] Creating CGView maps. 191s Parsing XML input. 192s Drawing features.................. 192s Positioning and drawing 0 labels.......................... 192s 0 labels were removed. 192s Drawing tick marks. 193s Drawing legends. 193s The map has been drawn. 193s Writing picture to /var/tmp/cct/test_output/test_plots/maps/test_plots_project_settings.png 193s Writing HTML to /var/tmp/cct/test_output/test_plots/maps/test_plots_project_settings.html 193s [Saturday July 27 01:30:29 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_plots/maps. 193s Processing project 'test_blastp' 193s Processing project 'test_blastp' using configuration 'project_settings.conf' 193s [Saturday July 27 01:30:29 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_blastp/project_settings.conf. 193s [Saturday July 27 01:30:29 2024] [Notice] Extracting ORF translations from reference genome sequence in /var/tmp/cct/test_output/test_blastp/reference_genome for BLAST searches. 193s Extracting ORFs in reading frame 1 on strand 1. 193s Extracting ORFs in reading frame 2 on strand 1. 193s Extracting ORFs in reading frame 3 on strand 1. 193s Extracting ORFs in reading frame 1 on strand -1. 193s Extracting ORFs in reading frame 2 on strand -1. 193s Extracting ORFs in reading frame 3 on strand -1. 193s A total of 338 records were written to /var/tmp/cct/test_output/test_blastp/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs. 193s [Saturday July 27 01:30:29 2024] [Notice] Reference genome ORF translations have been written to /var/tmp/cct/test_output/test_blastp/reference_genome/orfs. 193s [Saturday July 27 01:30:29 2024] [Notice] Copying protein sequences in /var/tmp/cct/test_output/test_blastp/comparison_genomes for BLAST searches. 193s [Saturday July 27 01:30:29 2024] [Notice] Protein sequences have been copied to /var/tmp/cct/test_output/test_blastp/comparison_genomes/proteins. 193s [Saturday July 27 01:30:29 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_blastp/comparison_genomes/proteins. 193s [Saturday July 27 01:30:29 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_blastp/blast/blast_db. 193s [Saturday July 27 01:30:29 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_blastp/reference_genome/orfs and databases in /var/tmp/cct/test_output/test_blastp/blast/blast_db. 193s [Saturday July 27 01:30:29 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_blastp/blast/blast_results_local. 193s [Saturday July 27 01:30:29 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_blastp/reference_genome. 193s [Saturday July 27 01:30:29 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_blastp/features. 193s [Saturday July 27 01:30:29 2024] [Notice] Creating CGView XML files. 194s Creating XML for feature sets on the outside of the backbone circle. 194s Feature sets written first are drawn closest to the backbone circle. 194s Creating XML for ORFs that are in reading frame +1. 194s Creating XML for ORFs that are in reading frame +2. 194s Creating XML for ORFs that are in reading frame +3. 194s Creating XML for feature sets on the inside of the backbone circle. 194s Feature sets written first are drawn closest to the backbone circle. 194s Creating XML for ORFs that are in reading frame -1. 194s Creating XML for ORFs that are in reading frame -2. 194s Creating XML for ORFs that are in reading frame -3. 194s Creating XML for GC content information. 194s Plotting GC content using a window size of 500 and a step of 1. 194s The maximum GC content value is 0.5768. 194s The minimum GC content value is 0.4311. 194s The average GC content value is 0.5051. 194s GC content will be scaled based on the maximum and minimum values. 194s GC content will be plotted as the deviation from the average value. 194s Creating XML for GC skew information. 194s Plotting GC skew using a window size of 500 and a step of 1. 194s The maximum GC skew value is 0.1587. 194s The minimum GC skew value is -0.2263. 194s The average GC skew value is -0.0036. 194s GC skew will be scaled based on the maximum and minimum values. 194s GC skew will be plotted as the deviation from the average value. 194s CGView XML file complete. 194s The recommended CGView command is: 194s ---------------------------------- 194s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_blastp/maps/cgview_xml/test_blastp_project_settings.conf_medium.xml -o map.png 194s Success! 194s The following key-values were used: 194s ----------------------------------- 194s arrowheadLength=6 194s average=T 194s atColorNeg=rgb(51,51,51) 194s atColorPos=rgb(51,51,51) 194s at_content=F 194s atSkewColorNeg=rgb(0,0,153) 194s atSkewColorPos=rgb(153,153,0) 194s at_skew=F 194s backboneColor=rgb(102,102,102) 194s backboneRadius=1000 194s backboneThickness=8 194s backgroundColor=white 194s blast_divider_ruler=F 194s blastRulerColor=rgb(255,165,0) 194s borderColor=black 194s combined_orfs=F 194s details=T 194s draw_divider_rings=T 194s featureOpacity=0.5 194s featureOpacityOther=0.5 194s featureSlotSpacing=6 194s featureThickness=30 194s featureThicknessPlot=186.00 194s feature_labels=F 194s gcColorNeg=rgb(0,0,0) 194s gcColorPos=rgb(0,0,0) 194s gc_content=T 194s gcSkewColorNeg=rgb(153,0,153) 194s gcSkewColorPos=rgb(0,153,0) 194s gc_skew=T 194s gene_decoration=arrow 194s gene_labels=F 194s global_label=true 194s height=3000 194s hit_labels=F 194s labelFontSize=15 194s labelPlacementQuality=good 194s labelLineLength=200 194s labelLineThickness=4 194s legend=T 194s legendFontSize=20 194s orf_labels=F 194s maxLabelLength=20 194s maxLegendLength=30 194s maxTitleLength=50 194s minimumFeatureLength=0.2 194s moveInnerLabelsToOuter=false 194s orfColor=rgb(204,0,0) 194s orfs=T 194s orf_size=25 194s otherColor=rgb(51,51,51) 194s parse_reading_frame=F 194s proteinColor=rgb(0,0,153) 194s reading_frames=F 194s rRNAColor=rgb(153,0,153) 194s rulerFontColor=rgb(0,0,0) 194s rulerFontSize=30 194s rulerPadding=40 194s scale=T 194s scale_blast=T 194s show_sequence_features=T 194s show_queries=F 194s startColor=rgb(153,0,153) 194s starts=ttg|ctg|att|atc|ata|atg|gtg 194s step=1 194s stopColor=rgb(204,0,0) 194s stops=taa|tag|tga 194s title= 194s titleFontSize=80 194s tickColor=rgb(0,51,0) 194s tickLength=15 194s tickThickness=6 194s tick_density=0.166666666666667 194s tRNAColor=rgb(153,0,0) 194s useInnerLabels=true 194s use_opacity=F 194s width=3000 194s window=500 194s ----------------------------------- 194s [Saturday July 27 01:30:30 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_blastp/maps/cgview_xml. 194s [Saturday July 27 01:30:30 2024] [Notice] Creating CGView maps. 194s Parsing XML input. 196s Drawing features.................. 196s Positioning and drawing 0 labels.......................... 196s 0 labels were removed. 196s Drawing tick marks. 196s Drawing legends. 196s The map has been drawn. 196s Writing picture to /var/tmp/cct/test_output/test_blastp/maps/test_blastp_project_settings.png 197s Writing HTML to /var/tmp/cct/test_output/test_blastp/maps/test_blastp_project_settings.html 197s [Saturday July 27 01:30:33 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_blastp/maps. 197s Processing project 'test_tblastx' 197s Processing project 'test_tblastx' using configuration 'project_settings.conf' 197s [Saturday July 27 01:30:33 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_tblastx/project_settings.conf. 197s [Saturday July 27 01:30:33 2024] [Notice] Splitting the reference genome sequence in /var/tmp/cct/test_output/test_tblastx/reference_genome for BLAST searches. 197s [Saturday July 27 01:30:33 2024] [Notice] Reference genome sequence has been split and written to /var/tmp/cct/test_output/test_tblastx/reference_genome/split. 197s [Saturday July 27 01:30:33 2024] [Notice] Splitting the comparison genome sequences in /var/tmp/cct/test_output/test_tblastx/comparison_genomes for BLAST searches. 197s [Saturday July 27 01:30:33 2024] [Notice] Comparison genome sequences have been split and written to /var/tmp/cct/test_output/test_tblastx/comparison_genomes/split. 197s [Saturday July 27 01:30:33 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_tblastx/comparison_genomes/split. 198s [Saturday July 27 01:30:34 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_tblastx/blast/blast_db. 198s [Saturday July 27 01:30:34 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_tblastx/reference_genome/split and databases in /var/tmp/cct/test_output/test_tblastx/blast/blast_db. 198s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 198s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_tblastx to view the BLAST results. 198s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 198s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastx to view the BLAST results. 198s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 198s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_tblastx to view the BLAST results. 198s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 198s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Writing HSP to file. 198s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastx to view the BLAST results. 198s [Saturday July 27 01:30:34 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local. 198s [Saturday July 27 01:30:34 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_tblastx/reference_genome. 198s [Saturday July 27 01:30:34 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_tblastx/features. 198s [Saturday July 27 01:30:34 2024] [Notice] Creating CGView XML files. 198s [Saturday July 27 01:30:34 2024] [Notice] The following BLAST results will be drawn, from outside to center: 198s [Saturday July 27 01:30:34 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_tblastx 198s [Saturday July 27 01:30:34 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastx 198s [Saturday July 27 01:30:34 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_tblastx 198s [Saturday July 27 01:30:34 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastx 199s Creating XML for feature sets on the outside of the backbone circle. 199s Feature sets written first are drawn closest to the backbone circle. 199s Creating XML for ORFs that are in reading frame +1. 199s Creating XML for ORFs that are in reading frame +2. 199s Creating XML for ORFs that are in reading frame +3. 199s Creating XML for feature sets on the inside of the backbone circle. 199s Feature sets written first are drawn closest to the backbone circle. 199s Creating XML for ORFs that are in reading frame -1. 199s Creating XML for ORFs that are in reading frame -2. 199s Creating XML for ORFs that are in reading frame -3. 199s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_tblastx. 199s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastx. 199s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_tblastx. 199s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastx. 199s Creating XML for GC content information. 199s Plotting GC content using a window size of 500 and a step of 1. 199s The maximum GC content value is 0.5768. 199s The minimum GC content value is 0.4311. 199s The average GC content value is 0.5051. 199s GC content will be scaled based on the maximum and minimum values. 199s GC content will be plotted as the deviation from the average value. 199s Creating XML for GC skew information. 199s Plotting GC skew using a window size of 500 and a step of 1. 199s The maximum GC skew value is 0.1587. 199s The minimum GC skew value is -0.2263. 199s The average GC skew value is -0.0036. 199s GC skew will be scaled based on the maximum and minimum values. 199s GC skew will be plotted as the deviation from the average value. 199s CGView XML file complete. 199s The recommended CGView command is: 199s ---------------------------------- 199s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_tblastx/maps/cgview_xml/test_tblastx_project_settings.conf_medium.xml -o map.png 199s Success! 199s The following key-values were used: 199s ----------------------------------- 199s arrowheadLength=6 199s average=T 199s atColorNeg=rgb(51,51,51) 199s atColorPos=rgb(51,51,51) 199s at_content=F 199s atSkewColorNeg=rgb(0,0,153) 199s atSkewColorPos=rgb(153,153,0) 199s at_skew=F 199s backboneColor=rgb(102,102,102) 199s backboneRadius=1000 199s backboneThickness=8 199s backgroundColor=white 199s blast_divider_ruler=F 199s blastRulerColor=rgb(255,165,0) 199s borderColor=black 199s combined_orfs=F 199s details=T 199s draw_divider_rings=T 199s featureOpacity=0.5 199s featureOpacityOther=0.5 199s featureSlotSpacing=6 199s featureThickness=9.86 199s featureThicknessPlot=59.14 199s feature_labels=F 199s gcColorNeg=rgb(0,0,0) 199s gcColorPos=rgb(0,0,0) 199s gc_content=T 199s gcSkewColorNeg=rgb(153,0,153) 199s gcSkewColorPos=rgb(0,153,0) 199s gc_skew=T 199s gene_decoration=arrow 199s gene_labels=F 199s global_label=true 199s height=3000 199s hit_labels=F 199s labelFontSize=15 199s labelPlacementQuality=good 199s labelLineLength=200 199s labelLineThickness=4 199s legend=T 199s legendFontSize=20 199s orf_labels=F 199s maxLabelLength=20 199s maxLegendLength=30 199s maxTitleLength=50 199s minimumFeatureLength=0.2 199s moveInnerLabelsToOuter=false 199s orfColor=rgb(204,0,0) 199s orfs=T 199s orf_size=25 199s otherColor=rgb(51,51,51) 199s parse_reading_frame=T 199s proteinColor=rgb(0,0,153) 199s reading_frames=F 199s rRNAColor=rgb(153,0,153) 199s rulerFontColor=rgb(0,0,0) 199s rulerFontSize=30 199s rulerPadding=40 199s scale=T 199s scale_blast=T 199s show_sequence_features=T 199s show_queries=T 199s startColor=rgb(153,0,153) 199s starts=ttg|ctg|att|atc|ata|atg|gtg 199s step=1 199s stopColor=rgb(204,0,0) 199s stops=taa|tag|tga 199s title= 199s titleFontSize=80 199s tickColor=rgb(0,51,0) 199s tickLength=15 199s tickThickness=6 199s tick_density=0.166666666666667 199s tRNAColor=rgb(153,0,0) 199s useInnerLabels=true 199s use_opacity=F 199s width=3000 199s window=500 199s ----------------------------------- 199s [Saturday July 27 01:30:35 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_tblastx/maps/cgview_xml. 199s [Saturday July 27 01:30:35 2024] [Notice] Creating CGView maps. 199s Parsing XML input. 202s Drawing features.................................................................. 202s Positioning and drawing 0 labels.......................... 202s 0 labels were removed. 202s Drawing tick marks. 202s Drawing legends. 202s The map has been drawn. 202s Writing picture to /var/tmp/cct/test_output/test_tblastx/maps/test_tblastx_project_settings.png 202s Writing HTML to /var/tmp/cct/test_output/test_tblastx/maps/test_tblastx_project_settings.html 202s [Saturday July 27 01:30:38 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_tblastx/maps. 202s Processing project 'test_tblastn' 202s Processing project 'test_tblastn' using configuration 'project_settings.conf' 202s [Saturday July 27 01:30:38 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_tblastn/project_settings.conf. 202s [Saturday July 27 01:30:38 2024] [Notice] Extracting ORF translations from reference genome sequence in /var/tmp/cct/test_output/test_tblastn/reference_genome for BLAST searches. 203s Extracting ORFs in reading frame 1 on strand 1. 203s Extracting ORFs in reading frame 2 on strand 1. 203s Extracting ORFs in reading frame 3 on strand 1. 203s Extracting ORFs in reading frame 1 on strand -1. 203s Extracting ORFs in reading frame 2 on strand -1. 203s Extracting ORFs in reading frame 3 on strand -1. 203s A total of 338 records were written to /var/tmp/cct/test_output/test_tblastn/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs. 203s [Saturday July 27 01:30:39 2024] [Notice] Reference genome ORF translations have been written to /var/tmp/cct/test_output/test_tblastn/reference_genome/orfs. 203s [Saturday July 27 01:30:39 2024] [Notice] Splitting the comparison genome sequences in /var/tmp/cct/test_output/test_tblastn/comparison_genomes for BLAST searches. 203s [Saturday July 27 01:30:39 2024] [Notice] Comparison genome sequences have been split and written to /var/tmp/cct/test_output/test_tblastn/comparison_genomes/split. 203s [Saturday July 27 01:30:39 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_tblastn/comparison_genomes/split. 203s [Saturday July 27 01:30:39 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_tblastn/blast/blast_db. 203s [Saturday July 27 01:30:39 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_tblastn/reference_genome/orfs and databases in /var/tmp/cct/test_output/test_tblastn/blast/blast_db. 203s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Writing HSP to file. 204s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Writing HSP to file. 205s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Writing HSP to file. 205s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Writing HSP to file. 205s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Writing HSP to file. 206s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Writing HSP to file. 210s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Writing HSP to file. 212s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Writing HSP to file. 213s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Writing HSP to file. 218s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Writing HSP to file. 218s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Writing HSP to file. 218s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Writing HSP to file. 219s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Writing HSP to file. 220s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Writing HSP to file. 220s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Writing HSP to file. 225s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Writing HSP to file. 226s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Writing HSP to file. 229s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Writing HSP to file. 229s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Writing HSP to file. 230s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Writing HSP to file. 230s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Writing HSP to file. 231s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Writing HSP to file. 234s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Writing HSP to file. 235s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Writing HSP to file. 236s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Writing HSP to file. 236s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Writing HSP to file. 236s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Writing HSP to file. 241s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Writing HSP to file. 242s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 242s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Writing HSP to file. 243s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Writing HSP to file. 243s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 253s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 253s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 253s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 253s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 253s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 253s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 253s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 253s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 253s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 253s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 253s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 253s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf.fasta_split_DNA_tblastn to view the BLAST results. 253s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 253s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 253s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 253s Writing HSP to file. 253s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 253s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 253s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 253s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 253s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 253s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 253s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 253s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 253s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 253s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 253s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 253s Writing HSP to file. 253s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 253s Writing HSP to file. 253s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 253s Writing HSP to file. 253s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 253s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 253s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 253s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 253s Writing HSP to file. 253s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 253s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 253s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 253s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 253s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 253s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 253s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 253s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 253s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 253s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 253s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 253s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 253s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 253s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 253s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 253s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 253s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 253s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 253s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 253s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 253s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 253s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 253s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 253s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 253s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 253s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 253s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 253s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 253s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 253s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 253s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 253s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 253s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 253s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 253s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 253s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 253s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 253s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 253s Writing HSP to file. 253s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 253s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 253s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 253s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 253s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 253s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Writing HSP to file. 254s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Writing HSP to file. 255s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 255s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Writing HSP to file. 258s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Writing HSP to file. 259s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Writing HSP to file. 261s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Writing HSP to file. 261s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Writing HSP to file. 262s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Writing HSP to file. 262s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Writing HSP to file. 267s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Writing HSP to file. 268s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Writing HSP to file. 270s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Writing HSP to file. 271s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Writing HSP to file. 271s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Writing HSP to file. 272s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Writing HSP to file. 273s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Writing HSP to file. 276s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Writing HSP to file. 277s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Writing HSP to file. 277s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Writing HSP to file. 277s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Writing HSP to file. 277s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Writing HSP to file. 282s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Writing HSP to file. 283s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Writing HSP to file. 284s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Writing HSP to file. 285s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 292s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 292s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 292s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 292s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 292s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 292s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 292s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 292s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastn to view the BLAST results. 292s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 292s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 292s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 292s Writing HSP to file. 292s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 292s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 292s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 292s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 292s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 292s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 292s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 292s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 292s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 292s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 292s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 292s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 292s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 292s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 292s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 292s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 292s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 292s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 292s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 292s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 292s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 292s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 292s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 292s Writing HSP to file. 292s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 292s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 292s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 292s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 292s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 292s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 292s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 292s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 292s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 292s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 292s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 292s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 292s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 292s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 292s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 292s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Writing HSP to file. 294s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Writing HSP to file. 294s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Writing HSP to file. 294s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Writing HSP to file. 295s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Writing HSP to file. 298s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Writing HSP to file. 298s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 299s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 299s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 299s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 299s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 299s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 299s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 299s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 299s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 299s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 299s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 299s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 299s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 299s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 299s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 299s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 299s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 300s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 300s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 300s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 300s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 300s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 300s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 300s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 300s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 300s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 300s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 300s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 300s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 300s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 300s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 300s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 300s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 301s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 301s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 301s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 301s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 301s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 301s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 301s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 301s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 301s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 301s Writing HSP to file. 301s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 301s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 301s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 301s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 301s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 301s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 301s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 301s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 301s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 302s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 302s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 302s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 302s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 302s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 302s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 302s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 302s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 302s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 302s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 302s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 302s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 302s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 302s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 302s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 302s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 303s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 303s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 303s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 303s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 303s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 303s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 303s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 303s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 303s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 303s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 303s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 303s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 303s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 303s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 304s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 304s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 304s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 304s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 304s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 304s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 304s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 304s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 304s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 304s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 304s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 304s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 304s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 304s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 304s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 304s Writing HSP to file. 304s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 305s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 305s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 305s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 305s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 305s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 305s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 305s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 305s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 305s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 305s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 305s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 305s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 305s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 305s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 306s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 306s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 306s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 306s Writing HSP to file. 306s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 306s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 306s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 306s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 306s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 306s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 306s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 306s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 306s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 306s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 306s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 306s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 306s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 307s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 307s Writing HSP to file. 307s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 307s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 307s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 307s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 307s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 307s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 307s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 307s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 307s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 307s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 307s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 307s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 307s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 308s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 308s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 308s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 308s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 308s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 308s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 308s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 308s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 308s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 308s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 308s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 308s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 308s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 308s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 308s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 308s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 309s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 309s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 309s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 309s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 309s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 309s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 309s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 309s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 309s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 309s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 309s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 309s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 309s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 309s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 309s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 309s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 310s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 310s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 310s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 310s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 310s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 310s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 310s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 310s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 310s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 310s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 310s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 310s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 310s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 310s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 310s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 310s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 311s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 311s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 311s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 311s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 311s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 311s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 311s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 311s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 311s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 311s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 311s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 311s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 311s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 311s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 311s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 311s Writing HSP to file. 311s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 312s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 312s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 312s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 312s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 312s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 312s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 312s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 312s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 312s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 312s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 312s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 312s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 312s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 312s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 313s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 313s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 313s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 313s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 313s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 313s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 313s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 313s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 313s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 313s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 313s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 313s Writing HSP to file. 313s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 313s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 313s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 313s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 313s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 314s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 314s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 314s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 314s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 314s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 314s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 314s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 314s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 314s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 314s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 314s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 314s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 314s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 314s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 314s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 315s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 315s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 315s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 315s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 315s Writing HSP to file. 315s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 315s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 315s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 315s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 315s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 315s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 315s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 315s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 315s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 315s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 315s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 315s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 315s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 316s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 316s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 316s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 316s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 316s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 316s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 316s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 316s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 316s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 316s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 316s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 316s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 316s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 316s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 316s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 316s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 317s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 317s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 317s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 317s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 317s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 317s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 317s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 317s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 317s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 317s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 317s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 317s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 317s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 317s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 318s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 318s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 318s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 318s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 318s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 318s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 318s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 318s Writing HSP to file. 318s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 318s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 318s Writing HSP to file. 318s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 318s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 318s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 318s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 318s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 318s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 318s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 319s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 319s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 319s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 319s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 319s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 319s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 319s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 319s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 319s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 319s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 319s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 319s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 319s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 319s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 319s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 319s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 320s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 320s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 320s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 320s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 320s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 320s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 320s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 320s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 320s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 320s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 320s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 320s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 320s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 320s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 321s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 321s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 321s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 321s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 321s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 321s Writing HSP to file. 321s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 321s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 321s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 321s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 321s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 321s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 321s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 321s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 321s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 321s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 321s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 322s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 322s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 322s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 322s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 322s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 322s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 322s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 322s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 322s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 322s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 322s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 322s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 322s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 322s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 322s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 322s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 322s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 323s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 323s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 323s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 323s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 323s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 323s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 323s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 323s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 323s Writing HSP to file. 323s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 323s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 323s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 323s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 323s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 323s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 323s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 323s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 323s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 324s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 324s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 324s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 324s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 324s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 324s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 324s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 324s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 324s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 324s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 324s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 324s Writing HSP to file. 324s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 324s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 324s Writing HSP to file. 324s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 325s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 325s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 325s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 325s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 325s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 325s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 325s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 325s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 325s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 325s Writing HSP to file. 325s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 325s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 325s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 325s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 325s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 325s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 325s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 325s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 325s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 326s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 326s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 326s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 326s Writing HSP to file. 326s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 326s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 326s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 326s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 326s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 326s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 326s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 326s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 326s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 326s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 326s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 327s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 327s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 327s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 327s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 327s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 327s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 327s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 327s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 327s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 327s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 327s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 327s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 327s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 327s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 327s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 327s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 328s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 328s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 328s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 328s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 328s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 328s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 328s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 328s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 328s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 328s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 328s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 328s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 328s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 328s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 328s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 329s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 329s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 329s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 329s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 329s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 329s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 329s Writing HSP to file. 329s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 329s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 329s Writing HSP to file. 329s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 329s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 329s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 329s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 329s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf.fasta_split_DNA_tblastn to view the BLAST results. 329s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 329s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 329s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 330s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 330s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 330s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 330s Writing HSP to file. 330s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 330s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 330s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 330s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 330s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 330s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 330s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 330s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 330s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 330s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 330s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 330s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 330s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 331s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 331s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 331s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 331s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 331s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 331s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 331s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 331s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 331s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 331s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 331s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 331s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 331s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 331s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 332s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 332s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 332s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 332s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 332s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 332s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 332s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 332s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 332s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 332s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 332s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 332s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 332s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 332s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 332s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 332s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 333s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 333s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 333s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 333s Writing HSP to file. 333s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 333s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 333s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 333s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 333s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 333s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 333s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 333s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 333s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 333s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 333s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 333s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 333s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 334s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 334s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 334s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 334s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 334s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 334s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 334s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 334s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 334s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 334s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 334s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 334s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 334s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 334s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 334s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 334s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 335s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 335s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 335s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 335s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 335s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 335s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 335s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 335s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 335s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 335s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 335s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 335s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 335s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 335s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 336s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 336s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 336s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 336s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 336s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 336s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 336s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 336s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 336s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 336s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 336s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 336s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 336s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 336s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 336s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 336s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 337s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 337s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 337s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 337s Writing HSP to file. 337s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 337s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 337s Writing HSP to file. 337s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 337s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 337s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 337s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 337s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 337s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 337s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 337s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 337s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 338s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 338s Writing HSP to file. 338s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 338s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 338s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 338s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 338s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 338s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 338s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 338s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 338s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 338s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 338s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 338s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 338s Writing HSP to file. 338s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 339s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 339s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 339s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 339s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 339s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 339s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 339s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 339s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 339s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 339s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 339s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 339s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 339s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 339s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 339s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 339s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 340s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 340s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 340s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 340s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 340s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 340s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 340s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 340s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 340s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 340s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 340s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 340s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 340s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 340s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 341s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 341s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 341s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 341s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 341s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 341s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 341s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 341s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 341s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 341s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 341s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 341s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 341s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 341s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 341s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 341s Writing HSP to file. 341s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 342s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 342s Writing HSP to file. 342s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 342s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 342s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 342s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 342s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 342s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 342s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 342s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 342s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 342s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 342s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 342s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 342s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 343s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 343s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 343s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 343s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 343s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 343s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 343s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 343s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 343s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 343s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 343s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 343s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 343s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 343s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 343s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 343s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 344s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 344s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 344s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 344s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 344s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 344s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 344s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 344s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 344s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 344s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 344s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 344s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 344s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 344s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 345s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 345s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 345s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 345s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 345s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 345s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 345s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 345s Writing HSP to file. 345s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 345s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 345s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 345s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 345s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 345s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 345s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 345s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 345s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 346s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 346s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 346s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 346s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 346s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 346s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 346s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 346s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 346s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 346s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 346s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 346s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 346s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 346s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 346s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 346s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 347s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 347s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 347s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 347s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 347s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 347s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 347s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 347s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 347s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 347s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 347s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 347s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 347s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 347s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 348s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 348s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 348s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 348s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 348s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 348s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 348s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 348s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 348s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 348s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 348s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 348s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 348s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 348s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 349s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 349s Writing HSP to file. 349s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 349s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 349s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 349s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 349s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 349s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 349s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 349s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 349s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 349s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 349s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 349s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 349s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 350s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 350s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 350s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 350s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 350s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 350s Writing HSP to file. 350s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 350s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 350s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 350s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 350s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 350s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 350s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 350s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 350s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 350s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 350s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 350s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 350s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 351s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 351s Writing HSP to file. 351s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 351s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 351s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 351s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 351s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 351s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 351s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 351s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 351s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 351s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 351s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 351s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 351s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 351s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 351s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 352s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 352s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 352s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 352s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 352s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 352s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 352s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 352s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 352s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 352s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 352s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 352s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 352s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 352s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 352s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 352s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 352s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 352s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 353s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 353s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 353s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 353s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 353s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 353s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 353s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 353s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 353s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 353s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 353s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 353s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 353s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 353s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 353s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 353s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 354s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 354s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 354s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 354s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 354s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 354s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 354s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 354s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 354s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 354s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 354s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 354s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 354s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 354s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 354s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 354s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 354s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 354s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 355s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 355s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 355s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 355s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 355s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 355s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 355s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 355s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 355s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 355s Writing HSP to file. 355s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 355s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 355s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 355s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 355s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 355s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 355s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 356s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 356s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 356s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 356s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 356s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 356s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 356s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 356s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 356s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 356s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 356s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 356s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 356s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 356s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 356s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 356s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 357s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 357s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 357s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 357s Writing HSP to file. 357s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 357s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 357s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 357s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 357s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 357s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 357s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 357s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 357s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 357s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 357s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 357s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 357s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 358s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 358s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 358s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 358s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 358s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 358s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 358s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 358s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 358s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 358s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 358s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 358s Writing HSP to file. 358s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 358s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 358s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 358s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 358s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 358s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 359s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 359s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 359s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 359s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 359s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 359s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 359s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 359s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 359s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 359s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 359s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 359s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 359s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 359s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 359s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 360s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 360s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 360s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 360s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 360s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 360s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 360s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 360s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 360s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 360s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 360s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 360s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 360s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 360s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 360s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 360s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 361s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 361s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 361s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 361s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 361s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 361s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 361s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 361s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 361s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 361s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 361s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 361s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 361s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 361s Writing HSP to file. 361s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 362s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 362s Writing HSP to file. 362s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 362s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 362s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 362s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 362s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 362s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 362s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 362s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 362s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 362s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 362s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 362s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 362s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 362s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 362s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 362s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 363s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 363s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 363s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 363s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 363s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 363s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 363s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 363s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 363s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 363s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 363s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 363s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 363s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 363s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 363s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 363s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 363s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 364s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 364s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 364s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 364s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 364s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 364s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 364s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 364s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 364s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 364s Writing HSP to file. 364s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 364s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 364s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 364s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 364s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 364s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 364s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 365s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 365s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 365s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 365s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 365s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 365s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 365s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 365s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 365s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 365s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 365s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 365s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 365s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 365s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 365s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 365s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 366s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 366s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 366s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 366s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 366s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 366s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 366s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 366s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 366s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 366s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 366s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 366s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 366s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 366s Writing HSP to file. 366s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 366s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 366s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 366s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 366s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 367s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 367s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 367s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 367s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 367s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 367s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 367s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 367s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 367s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 367s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 367s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 367s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 367s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 367s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 368s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 368s Writing HSP to file. 368s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 368s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 368s Writing HSP to file. 368s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 368s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 368s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 368s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 368s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 368s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 368s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 368s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 368s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 368s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 368s Writing HSP to file. 368s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 368s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 368s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 369s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 369s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 369s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 369s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 369s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 369s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 369s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 369s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 369s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 369s Writing HSP to file. 369s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 369s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 369s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 369s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 369s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 369s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 369s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 370s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 370s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 370s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 370s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 370s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 370s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 370s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 370s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 370s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 370s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 370s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 370s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 370s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 370s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 370s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 370s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 370s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 371s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 371s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 371s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 371s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 371s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 371s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 371s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 371s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 371s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 371s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 371s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 371s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 371s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 371s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 371s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 371s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 372s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 372s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 372s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 372s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 372s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 372s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 372s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 372s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 372s Writing HSP to file. 372s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 372s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 372s Writing HSP to file. 372s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 372s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 372s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 372s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 372s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastn to view the BLAST results. 372s [Saturday July 27 01:33:28 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local. 372s [Saturday July 27 01:33:28 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_tblastn/reference_genome. 372s [Saturday July 27 01:33:28 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_tblastn/features. 372s [Saturday July 27 01:33:28 2024] [Notice] Creating CGView XML files. 372s [Saturday July 27 01:33:28 2024] [Notice] The following BLAST results will be drawn, from outside to center: 372s [Saturday July 27 01:33:28 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf.fasta_split_DNA_tblastn 372s [Saturday July 27 01:33:28 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastn 372s [Saturday July 27 01:33:28 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf.fasta_split_DNA_tblastn 372s [Saturday July 27 01:33:28 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastn 373s Creating XML for feature sets on the outside of the backbone circle. 373s Feature sets written first are drawn closest to the backbone circle. 373s Creating XML for ORFs that are in reading frame +1. 373s Creating XML for ORFs that are in reading frame +2. 373s Creating XML for ORFs that are in reading frame +3. 373s Creating XML for feature sets on the inside of the backbone circle. 373s Feature sets written first are drawn closest to the backbone circle. 373s Creating XML for ORFs that are in reading frame -1. 373s Creating XML for ORFs that are in reading frame -2. 373s Creating XML for ORFs that are in reading frame -3. 373s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf.fasta_split_DNA_tblastn. 373s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastn. 373s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf.fasta_split_DNA_tblastn. 373s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastn. 373s Creating XML for GC content information. 373s Plotting GC content using a window size of 500 and a step of 1. 373s The maximum GC content value is 0.5768. 373s The minimum GC content value is 0.4311. 373s The average GC content value is 0.5051. 373s GC content will be scaled based on the maximum and minimum values. 373s GC content will be plotted as the deviation from the average value. 373s Creating XML for GC skew information. 373s Plotting GC skew using a window size of 500 and a step of 1. 373s The maximum GC skew value is 0.1587. 373s The minimum GC skew value is -0.2263. 373s The average GC skew value is -0.0036. 373s GC skew will be scaled based on the maximum and minimum values. 373s GC skew will be plotted as the deviation from the average value. 373s CGView XML file complete. 373s The recommended CGView command is: 373s ---------------------------------- 373s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_tblastn/maps/cgview_xml/test_tblastn_project_settings.conf_medium.xml -o map.png 373s Success! 373s The following key-values were used: 373s ----------------------------------- 373s arrowheadLength=6 373s average=T 373s atColorNeg=rgb(51,51,51) 373s atColorPos=rgb(51,51,51) 373s at_content=F 373s atSkewColorNeg=rgb(0,0,153) 373s atSkewColorPos=rgb(153,153,0) 373s at_skew=F 373s backboneColor=rgb(102,102,102) 373s backboneRadius=1000 373s backboneThickness=8 373s backgroundColor=white 373s blast_divider_ruler=F 373s blastRulerColor=rgb(255,165,0) 373s borderColor=black 373s combined_orfs=F 373s details=T 373s draw_divider_rings=T 373s featureOpacity=0.5 373s featureOpacityOther=0.5 373s featureSlotSpacing=6 373s featureThickness=9.86 373s featureThicknessPlot=59.14 373s feature_labels=F 373s gcColorNeg=rgb(0,0,0) 373s gcColorPos=rgb(0,0,0) 373s gc_content=T 373s gcSkewColorNeg=rgb(153,0,153) 373s gcSkewColorPos=rgb(0,153,0) 373s gc_skew=T 373s gene_decoration=arrow 373s gene_labels=F 373s global_label=true 373s height=3000 373s hit_labels=F 373s labelFontSize=15 373s labelPlacementQuality=good 373s labelLineLength=200 373s labelLineThickness=4 373s legend=T 373s legendFontSize=20 373s orf_labels=F 373s maxLabelLength=20 373s maxLegendLength=30 373s maxTitleLength=50 373s minimumFeatureLength=0.2 373s moveInnerLabelsToOuter=false 373s orfColor=rgb(204,0,0) 373s orfs=T 373s orf_size=25 373s otherColor=rgb(51,51,51) 373s parse_reading_frame=T 373s proteinColor=rgb(0,0,153) 373s reading_frames=F 373s rRNAColor=rgb(153,0,153) 373s rulerFontColor=rgb(0,0,0) 373s rulerFontSize=30 373s rulerPadding=40 373s scale=T 373s scale_blast=T 373s show_sequence_features=T 373s show_queries=T 373s startColor=rgb(153,0,153) 373s starts=ttg|ctg|att|atc|ata|atg|gtg 373s step=1 373s stopColor=rgb(204,0,0) 373s stops=taa|tag|tga 373s title= 373s titleFontSize=80 373s tickColor=rgb(0,51,0) 373s tickLength=15 373s tickThickness=6 373s tick_density=0.166666666666667 373s tRNAColor=rgb(153,0,0) 373s useInnerLabels=true 373s use_opacity=F 373s width=3000 373s window=500 373s ----------------------------------- 373s [Saturday July 27 01:33:29 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_tblastn/maps/cgview_xml. 373s [Saturday July 27 01:33:29 2024] [Notice] Creating CGView maps. 373s Parsing XML input. 376s Drawing features.................................................................. 376s Positioning and drawing 0 labels.......................... 376s 0 labels were removed. 376s Drawing tick marks. 376s Drawing legends. 376s The map has been drawn. 376s Writing picture to /var/tmp/cct/test_output/test_tblastn/maps/test_tblastn_project_settings.png 377s Writing HTML to /var/tmp/cct/test_output/test_tblastn/maps/test_tblastn_project_settings.html 377s [Saturday July 27 01:33:33 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_tblastn/maps. 377s Processing project 'test_orfs' 377s Processing project 'test_orfs' using configuration 'project_settings.conf' 377s [Saturday July 27 01:33:33 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_orfs/project_settings.conf. 377s [Saturday July 27 01:33:33 2024] [Notice] Creating CGView XML files. 377s Creating XML for feature sets on the outside of the backbone circle. 377s Feature sets written first are drawn closest to the backbone circle. 377s Creating XML for ORFs that are in reading frame +1. 377s Creating XML for ORFs that are in reading frame +2. 377s Creating XML for ORFs that are in reading frame +3. 377s Creating XML for feature sets on the inside of the backbone circle. 377s Feature sets written first are drawn closest to the backbone circle. 377s Creating XML for ORFs that are in reading frame -1. 377s Creating XML for ORFs that are in reading frame -2. 377s Creating XML for ORFs that are in reading frame -3. 377s CGView XML file complete. 377s The recommended CGView command is: 377s ---------------------------------- 377s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_orfs/maps/cgview_xml/test_orfs_project_settings.conf_medium.xml -o map.png 377s Success! 377s The following key-values were used: 377s ----------------------------------- 377s arrowheadLength=6 377s average=T 377s atColorNeg=rgb(51,51,51) 377s atColorPos=rgb(51,51,51) 377s at_content=F 377s atSkewColorNeg=rgb(0,0,153) 377s atSkewColorPos=rgb(153,153,0) 377s at_skew=F 377s backboneColor=rgb(102,102,102) 377s backboneRadius=1000 377s backboneThickness=8 377s backgroundColor=white 377s blast_divider_ruler=F 377s blastRulerColor=rgb(255,165,0) 377s borderColor=black 377s combined_orfs=F 377s details=T 377s draw_divider_rings=T 377s featureOpacity=0.5 377s featureOpacityOther=0.5 377s featureSlotSpacing=6 377s featureThickness=30 377s featureThicknessPlot=570.00 377s feature_labels=F 377s gcColorNeg=rgb(0,0,0) 377s gcColorPos=rgb(0,0,0) 377s gc_content=F 377s gcSkewColorNeg=rgb(153,0,153) 377s gcSkewColorPos=rgb(0,153,0) 377s gc_skew=F 377s gene_decoration=arrow 377s gene_labels=F 377s global_label=true 377s height=3000 377s hit_labels=F 377s labelFontSize=15 377s labelPlacementQuality=good 377s labelLineLength=200 377s labelLineThickness=4 377s legend=T 377s legendFontSize=20 377s orf_labels=T 377s maxLabelLength=20 377s maxLegendLength=30 377s maxTitleLength=50 377s minimumFeatureLength=0.2 377s moveInnerLabelsToOuter=false 377s orfColor=rgb(204,0,0) 377s orfs=T 377s orf_size=19 377s otherColor=rgb(51,51,51) 377s parse_reading_frame=F 377s proteinColor=rgb(0,0,153) 377s reading_frames=F 377s rRNAColor=rgb(153,0,153) 377s rulerFontColor=rgb(0,0,0) 377s rulerFontSize=30 377s rulerPadding=40 377s scale=T 377s scale_blast=T 377s show_sequence_features=T 377s show_queries=F 377s startColor=rgb(153,0,153) 377s starts=atg 377s step=1 377s stopColor=rgb(204,0,0) 377s stops=taa|tag|tga 377s title= 377s titleFontSize=80 377s tickColor=rgb(0,51,0) 377s tickLength=15 377s tickThickness=6 377s tick_density=0.166666666666667 377s tRNAColor=rgb(153,0,0) 377s useInnerLabels=true 377s use_opacity=F 377s width=3000 377s window=50 377s ----------------------------------- 377s [Saturday July 27 01:33:33 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_orfs/maps/cgview_xml. 377s [Saturday July 27 01:33:33 2024] [Notice] Creating CGView maps. 377s Parsing XML input. 378s Drawing features.............. 378s Positioning and drawing 41 labels.......................... 378s 0 labels were removed. 378s Drawing tick marks. 378s Drawing legends. 378s The map has been drawn. 378s Writing picture to /var/tmp/cct/test_output/test_orfs/maps/test_orfs_project_settings.png 378s Writing HTML to /var/tmp/cct/test_output/test_orfs/maps/test_orfs_project_settings.html 378s [Saturday July 27 01:33:34 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_orfs/maps. 378s Processing project 'test_blastx' 378s Processing project 'test_blastx' using configuration 'project_settings.conf' 378s [Saturday July 27 01:33:34 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_blastx/project_settings.conf. 378s [Saturday July 27 01:33:34 2024] [Notice] Splitting the reference genome sequence in /var/tmp/cct/test_output/test_blastx/reference_genome for BLAST searches. 378s [Saturday July 27 01:33:34 2024] [Notice] Reference genome sequence has been split and written to /var/tmp/cct/test_output/test_blastx/reference_genome/split. 378s [Saturday July 27 01:33:34 2024] [Notice] Copying protein sequences in /var/tmp/cct/test_output/test_blastx/comparison_genomes for BLAST searches. 378s [Saturday July 27 01:33:34 2024] [Notice] Protein sequences have been copied to /var/tmp/cct/test_output/test_blastx/comparison_genomes/proteins. 378s [Saturday July 27 01:33:34 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_blastx/comparison_genomes/proteins. 378s [Saturday July 27 01:33:34 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_blastx/blast/blast_db. 378s [Saturday July 27 01:33:34 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_blastx/reference_genome/split and databases in /var/tmp/cct/test_output/test_blastx/blast/blast_db. 378s [Saturday July 27 01:33:34 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_blastx/blast/blast_results_local. 378s [Saturday July 27 01:33:34 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_blastx/reference_genome. 378s [Saturday July 27 01:33:34 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_blastx/features. 378s [Saturday July 27 01:33:34 2024] [Notice] Creating CGView XML files. 379s Creating XML for feature sets on the outside of the backbone circle. 379s Feature sets written first are drawn closest to the backbone circle. 379s Creating XML for ORFs that are in reading frame +1. 379s Creating XML for ORFs that are in reading frame +2. 379s Creating XML for ORFs that are in reading frame +3. 379s Creating XML for feature sets on the inside of the backbone circle. 379s Feature sets written first are drawn closest to the backbone circle. 379s Creating XML for ORFs that are in reading frame -1. 379s Creating XML for ORFs that are in reading frame -2. 379s Creating XML for ORFs that are in reading frame -3. 379s Creating XML for GC content information. 379s Plotting GC content using a window size of 500 and a step of 1. 379s The maximum GC content value is 0.5768. 379s The minimum GC content value is 0.4311. 379s The average GC content value is 0.5051. 379s GC content will be scaled based on the maximum and minimum values. 379s GC content will be plotted as the deviation from the average value. 379s Creating XML for GC skew information. 379s Plotting GC skew using a window size of 500 and a step of 1. 379s The maximum GC skew value is 0.1587. 379s The minimum GC skew value is -0.2263. 379s The average GC skew value is -0.0036. 379s GC skew will be scaled based on the maximum and minimum values. 379s GC skew will be plotted as the deviation from the average value. 379s CGView XML file complete. 379s The recommended CGView command is: 379s ---------------------------------- 379s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_blastx/maps/cgview_xml/test_blastx_project_settings.conf_medium.xml -o map.png 379s Success! 379s The following key-values were used: 379s ----------------------------------- 379s arrowheadLength=6 379s average=T 379s atColorNeg=rgb(51,51,51) 379s atColorPos=rgb(51,51,51) 379s at_content=F 379s atSkewColorNeg=rgb(0,0,153) 379s atSkewColorPos=rgb(153,153,0) 379s at_skew=F 379s backboneColor=rgb(102,102,102) 379s backboneRadius=1000 379s backboneThickness=8 379s backgroundColor=white 379s blast_divider_ruler=F 379s blastRulerColor=rgb(255,165,0) 379s borderColor=black 379s combined_orfs=F 379s details=T 379s draw_divider_rings=T 379s featureOpacity=0.5 379s featureOpacityOther=0.5 379s featureSlotSpacing=6 379s featureThickness=30 379s featureThicknessPlot=186.00 379s feature_labels=F 379s gcColorNeg=rgb(0,0,0) 379s gcColorPos=rgb(0,0,0) 379s gc_content=T 379s gcSkewColorNeg=rgb(153,0,153) 379s gcSkewColorPos=rgb(0,153,0) 379s gc_skew=T 379s gene_decoration=arrow 379s gene_labels=F 379s global_label=true 379s height=3000 379s hit_labels=F 379s labelFontSize=15 379s labelPlacementQuality=good 379s labelLineLength=200 379s labelLineThickness=4 379s legend=T 379s legendFontSize=20 379s orf_labels=F 379s maxLabelLength=20 379s maxLegendLength=30 379s maxTitleLength=50 379s minimumFeatureLength=0.2 379s moveInnerLabelsToOuter=false 379s orfColor=rgb(204,0,0) 379s orfs=T 379s orf_size=25 379s otherColor=rgb(51,51,51) 379s parse_reading_frame=T 379s proteinColor=rgb(0,0,153) 379s reading_frames=F 379s rRNAColor=rgb(153,0,153) 379s rulerFontColor=rgb(0,0,0) 379s rulerFontSize=30 379s rulerPadding=40 379s scale=T 379s scale_blast=T 379s show_sequence_features=T 379s show_queries=T 379s startColor=rgb(153,0,153) 379s starts=ttg|ctg|att|atc|ata|atg|gtg 379s step=1 379s stopColor=rgb(204,0,0) 379s stops=taa|tag|tga 379s title= 379s titleFontSize=80 379s tickColor=rgb(0,51,0) 379s tickLength=15 379s tickThickness=6 379s tick_density=0.166666666666667 379s tRNAColor=rgb(153,0,0) 379s useInnerLabels=true 379s use_opacity=F 379s width=3000 379s window=500 379s ----------------------------------- 379s [Saturday July 27 01:33:35 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_blastx/maps/cgview_xml. 379s [Saturday July 27 01:33:35 2024] [Notice] Creating CGView maps. 379s Parsing XML input. 382s Drawing features.................. 382s Positioning and drawing 0 labels.......................... 382s 0 labels were removed. 382s Drawing tick marks. 382s Drawing legends. 382s The map has been drawn. 382s Writing picture to /var/tmp/cct/test_output/test_blastx/maps/test_blastx_project_settings.png 382s Writing HTML to /var/tmp/cct/test_output/test_blastx/maps/test_blastx_project_settings.html 382s [Saturday July 27 01:33:38 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_blastx/maps. 382s Test project output written to '/var/tmp/cct/test_output' 383s autopkgtest [01:33:39]: test run-unit-test: -----------------------] 383s autopkgtest [01:33:39]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 383s run-unit-test PASS 383s autopkgtest [01:33:39]: @@@@@@@@@@@@@@@@@@@@ summary 383s run-unit-test PASS 401s nova [W] Skipping flock for amd64 401s Creating nova instance adt-oracular-amd64-cct-20240727-012714-juju-7f2275-prod-proposed-migration-environment-3-821c9d65-212f-4730-b6f1-1a1467e8bc83 from image adt/ubuntu-oracular-amd64-server-20240726.img (UUID 6c5f29e9-79d7-45b1-9721-03e2205f6a0e)...