0s autopkgtest [13:18:14]: starting date and time: 2024-07-23 13:18:14+0000 0s autopkgtest [13:18:14]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [13:18:14]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mgxbvmml/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:boost1.83 --apt-upgrade bornagain --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=boost1.83/1.83.0-3ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-99.secgroup --name adt-oracular-amd64-bornagain-20240723-131812-juju-7f2275-prod-proposed-migration-environment-2-221a26fb-8ba5-4d59-812c-1aef7c86b317 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 161s autopkgtest [13:20:55]: testbed dpkg architecture: amd64 162s autopkgtest [13:20:56]: testbed apt version: 2.9.6 162s autopkgtest [13:20:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 162s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 162s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 162s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [393 kB] 162s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [66.5 kB] 162s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [5704 B] 162s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [136 kB] 162s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [90.6 kB] 162s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 162s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 162s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 162s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 162s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [555 kB] 162s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [347 kB] 162s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 162s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [9612 B] 162s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 162s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 164s Fetched 1795 kB in 0s (6082 kB/s) 164s Reading package lists... 165s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s Calculating upgrade... 166s The following packages will be upgraded: 166s gcc-14-base libgcc-s1 libstdc++6 systemd-hwe-hwdb 166s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Need to get 920 kB of archives. 166s After this operation, 1024 B of additional disk space will be used. 166s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-14-base amd64 14.1.0-5ubuntu1 [49.9 kB] 166s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++6 amd64 14.1.0-5ubuntu1 [789 kB] 166s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-s1 amd64 14.1.0-5ubuntu1 [78.3 kB] 166s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 systemd-hwe-hwdb all 256.2.1 [3210 B] 167s Fetched 920 kB in 0s (10.1 MB/s) 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 167s Preparing to unpack .../gcc-14-base_14.1.0-5ubuntu1_amd64.deb ... 167s Unpacking gcc-14-base:amd64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 167s Setting up gcc-14-base:amd64 (14.1.0-5ubuntu1) ... 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 167s Preparing to unpack .../libstdc++6_14.1.0-5ubuntu1_amd64.deb ... 167s Unpacking libstdc++6:amd64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 167s Setting up libstdc++6:amd64 (14.1.0-5ubuntu1) ... 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 167s Preparing to unpack .../libgcc-s1_14.1.0-5ubuntu1_amd64.deb ... 167s Unpacking libgcc-s1:amd64 (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 167s Setting up libgcc-s1:amd64 (14.1.0-5ubuntu1) ... 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 167s Preparing to unpack .../systemd-hwe-hwdb_256.2.1_all.deb ... 167s Unpacking systemd-hwe-hwdb (256.2.1) over (255.1.3) ... 167s Setting up systemd-hwe-hwdb (256.2.1) ... 168s Processing triggers for udev (256-1ubuntu1) ... 168s Processing triggers for libc-bin (2.39-0ubuntu9) ... 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 169s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 169s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 169s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 169s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 171s Reading package lists... 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 172s Calculating upgrade... 172s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s autopkgtest [13:21:08]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 174s autopkgtest [13:21:08]: @@@@@@@@@@@@@@@@@@@@ apt-source bornagain 177s Get:1 http://ftpmaster.internal/ubuntu oracular/universe bornagain 21.1+ds3-5build1 (dsc) [2917 B] 177s Get:2 http://ftpmaster.internal/ubuntu oracular/universe bornagain 21.1+ds3-5build1 (tar) [47.7 MB] 177s Get:3 http://ftpmaster.internal/ubuntu oracular/universe bornagain 21.1+ds3-5build1 (diff) [10.1 kB] 177s gpgv: Signature made Sat Jun 1 07:29:34 2024 UTC 177s gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 177s gpgv: Can't check signature: No public key 177s dpkg-source: warning: cannot verify inline signature for ./bornagain_21.1+ds3-5build1.dsc: no acceptable signature found 179s autopkgtest [13:21:13]: testing package bornagain version 21.1+ds3-5build1 179s autopkgtest [13:21:13]: build not needed 181s autopkgtest [13:21:15]: test python3: preparing testbed 181s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Starting pkgProblemResolver with broken count: 0 182s Starting 2 pkgProblemResolver with broken count: 0 182s Done 183s The following additional packages will be installed: 183s blt fonts-lyx libblas3 libboost-iostreams1.83.0 libcerf2 libfftw3-double3 183s libformfactor0.3.0 libgfortran5 libgomp1 libgraphite2-3 libgsl27 183s libgslcblas0 libharfbuzz0b libimagequant0 libjs-jquery libjs-jquery-ui 183s liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libpython3.12t64 libqhull-r8.0 183s libraqm0 libtcl8.6 libtiffxx6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2 183s libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 183s python3-appdirs python3-bornagain python3-brotli python3-contourpy 183s python3-cycler python3-dateutil python3-decorator python3-fonttools 183s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 183s python3-mpmath python3-numpy python3-packaging python3-pil 183s python3-pil.imagetk python3-scipy python3-sympy python3-tk python3-ufolib2 183s tk8.6-blt2.5 unicode-data x11-common 183s Suggested packages: 183s blt-demo libfftw3-bin libfftw3-dev gsl-ref-psdoc | gsl-doc-pdf 183s | gsl-doc-info | gsl-ref-html libjs-jquery-ui-docs liblcms2-utils tcl8.6 183s tk8.6 python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 183s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 183s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 183s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 183s python3-gmpy2 gcc gfortran python-numpy-doc python3-dev python3-pytest 183s python-pil-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix 183s python3-tk-dbg 183s Recommended packages: 183s javascript-common python3-bs4 python3-cssselect python3-html5lib 183s python3-olefile g++ | c++-compiler isympy-common 183s The following NEW packages will be installed: 183s autopkgtest-satdep blt fonts-lyx libblas3 libboost-iostreams1.83.0 libcerf2 183s libfftw3-double3 libformfactor0.3.0 libgfortran5 libgomp1 libgraphite2-3 183s libgsl27 libgslcblas0 libharfbuzz0b libimagequant0 libjs-jquery 183s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 183s libpython3.12t64 libqhull-r8.0 libraqm0 libtcl8.6 libtiffxx6 libtk8.6 183s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 183s python-matplotlib-data python3-all python3-appdirs python3-bornagain 183s python3-brotli python3-contourpy python3-cycler python3-dateutil 183s python3-decorator python3-fonttools python3-fs python3-kiwisolver 183s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 183s python3-packaging python3-pil python3-pil.imagetk python3-scipy 183s python3-sympy python3-tk python3-ufolib2 tk8.6-blt2.5 unicode-data 183s x11-common 183s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 183s Need to get 63.4 MB/63.4 MB of archives. 183s After this operation, 269 MB of additional disk space will be used. 183s Get:1 /tmp/autopkgtest.7LGEoM/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [712 B] 183s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 183s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 183s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 183s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 183s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 183s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 183s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 183s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 183s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.1-2 [171 kB] 183s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 183s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-3ubuntu2 [259 kB] 183s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcerf2 amd64 2.4-2build1 [27.4 kB] 183s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-5ubuntu1 [148 kB] 183s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libfftw3-double3 amd64 3.3.10-1ubuntu3 [838 kB] 183s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 libformfactor0.3.0 amd64 0.3.1-1 [62.7 kB] 183s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-5ubuntu1 [909 kB] 183s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 183s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgslcblas0 amd64 2.7.1+dfsg-6ubuntu2 [104 kB] 183s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgsl27 amd64 2.7.1+dfsg-6ubuntu2 [987 kB] 183s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 183s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 183s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 183s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 183s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 183s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 183s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 183s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libpython3.12t64 amd64 3.12.4-1ubuntu1 [2341 kB] 184s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 184s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 184s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libtiffxx6 amd64 4.5.1+git230720-4ubuntu3 [5734 B] 184s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 184s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 184s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 184s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 184s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 184s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 184s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 184s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 184s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.4.0-1 [462 kB] 184s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 184s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.4.0-1 [9264 B] 184s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 184s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 184s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 184s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 184s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 184s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 184s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 184s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 184s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 184s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 184s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.2-1 [1243 kB] 184s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 184s Get:55 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 184s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 184s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 184s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.1-1 [41.4 kB] 184s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB] 184s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bornagain amd64 21.1+ds3-5build1 [2878 kB] 185s Fetched 63.4 MB in 2s (41.4 MB/s) 185s Selecting previously unselected package libtcl8.6:amd64. 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 185s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 185s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 185s Selecting previously unselected package libxrender1:amd64. 185s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 185s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 185s Selecting previously unselected package libxft2:amd64. 185s Preparing to unpack .../02-libxft2_2.3.6-1build1_amd64.deb ... 185s Unpacking libxft2:amd64 (2.3.6-1build1) ... 185s Selecting previously unselected package x11-common. 185s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 185s Unpacking x11-common (1:7.7+23ubuntu3) ... 185s Selecting previously unselected package libxss1:amd64. 185s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_amd64.deb ... 185s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 185s Selecting previously unselected package libtk8.6:amd64. 185s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_amd64.deb ... 185s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 185s Selecting previously unselected package tk8.6-blt2.5. 185s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 185s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 185s Selecting previously unselected package blt. 185s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_amd64.deb ... 185s Unpacking blt (2.5.3+dfsg-7build1) ... 185s Selecting previously unselected package fonts-lyx. 185s Preparing to unpack .../08-fonts-lyx_2.4.1-2_all.deb ... 185s Unpacking fonts-lyx (2.4.1-2) ... 185s Selecting previously unselected package libblas3:amd64. 185s Preparing to unpack .../09-libblas3_3.12.0-3build1_amd64.deb ... 185s Unpacking libblas3:amd64 (3.12.0-3build1) ... 185s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 185s Preparing to unpack .../10-libboost-iostreams1.83.0_1.83.0-3ubuntu2_amd64.deb ... 185s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-3ubuntu2) ... 185s Selecting previously unselected package libcerf2. 185s Preparing to unpack .../11-libcerf2_2.4-2build1_amd64.deb ... 185s Unpacking libcerf2 (2.4-2build1) ... 185s Selecting previously unselected package libgomp1:amd64. 185s Preparing to unpack .../12-libgomp1_14.1.0-5ubuntu1_amd64.deb ... 185s Unpacking libgomp1:amd64 (14.1.0-5ubuntu1) ... 185s Selecting previously unselected package libfftw3-double3:amd64. 185s 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libxrender1:amd64 (1:0.9.10-1.1build1) ... 189s Setting up libgslcblas0:amd64 (2.7.1+dfsg-6ubuntu2) ... 189s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 190s Setting up fonts-lyx (2.4.1-2) ... 190s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 190s Setting up x11-common (1:7.7+23ubuntu3) ... 190s Setting up libcerf2 (2.4-2build1) ... 190s Setting up libgsl27:amd64 (2.7.1+dfsg-6ubuntu2) ... 190s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 190s Setting up python3-all (3.12.3-0ubuntu1) ... 190s Setting up libgomp1:amd64 (14.1.0-5ubuntu1) ... 190s Setting up unicode-data (15.1.0-1) ... 190s Setting up libpython3.12t64:amd64 (3.12.4-1ubuntu1) ... 190s Setting up python3-decorator (5.1.1-5) ... 190s Setting up libblas3:amd64 (3.12.0-3build1) ... 190s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 190s Setting up python3-packaging (24.1-1) ... 190s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-3ubuntu2) ... 190s Setting up python3-brotli (1.1.0-2build2) ... 191s Setting up python3-cycler (0.12.1-1) ... 191s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 191s Setting up python3-kiwisolver (1.4.5-1) ... 191s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 191s Setting up libformfactor0.3.0:amd64 (0.3.1-1) ... 191s Setting up libfftw3-double3:amd64 (3.3.10-1ubuntu3) ... 191s Setting up libgfortran5:amd64 (14.1.0-5ubuntu1) ... 191s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 191s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 191s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... 191s Setting up python3-dateutil (2.9.0-2) ... 191s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 191s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 191s Setting up python3-mpmath (1.3.0-1) ... 192s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 192s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 192s Setting up libtiffxx6:amd64 (4.5.1+git230720-4ubuntu3) ... 192s Setting up python3-appdirs (1.4.4-4) ... 192s Setting up python3-sympy (1.12-8) ... 200s Setting up liblapack3:amd64 (3.12.0-3build1) ... 200s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 200s Setting up libxft2:amd64 (2.3.6-1build1) ... 200s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 200s Setting up python3-fs (2.4.16-4) ... 200s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 200s Setting up libraqm0:amd64 (0.10.1-1build1) ... 200s Setting up python3-numpy (1:1.26.4+ds-10) ... 202s Setting up python3-lxml:amd64 (5.2.2-1) ... 203s Setting up python3-contourpy (1.0.7-3) ... 203s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 203s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 203s Setting up python3-scipy (1.12.0-2) ... 206s Setting up blt (2.5.3+dfsg-7build1) ... 206s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ... 206s Setting up python3-pil:amd64 (10.4.0-1) ... 207s Setting up python3-pil.imagetk:amd64 (10.4.0-1) ... 207s Setting up python3-fonttools (4.46.0-1build2) ... 208s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 208s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 209s Setting up python3-bornagain (21.1+ds3-5build1) ... 210s Setting up autopkgtest-satdep (0) ... 210s Processing triggers for libc-bin (2.39-0ubuntu9) ... 210s Processing triggers for man-db (2.12.1-2) ... 214s (Reading database ... 81114 files and directories currently installed.) 214s Removing autopkgtest-satdep (0) ... 214s autopkgtest [13:21:48]: test python3: [----------------------- 214s Testing with python3.12: 215s ... 215s ---------------------------------------------------------------------- 215s Ran 3 tests in 0.000s 215s 215s OK 215s ... 215s ---------------------------------------------------------------------- 215s Ran 3 tests in 0.004s 215s 215s OK 215s . 215s ---------------------------------------------------------------------- 215s Ran 1 test in 0.019s 215s 215s OK 215s 215s Standalone fit test: Decaying sin function 215s -------------------------------------------------------------------------------- 215s Run time (sec) : 0 215s Objective function calls : 185 215s Gradient calls : 0 215s -------------------------------------------------------------------------------- 215s MinimizerType : Minuit2 215s AlgorithmName : Migrad 215s --- Options -------------------------------------------------------------------- 215s Strategy : 1 Minimization strategy (0-low, 1-medium, 2-high quality) 215s ErrorDef : 1.000000Error definition factor for parameter error calculation 215s Tolerance : 0.010000Tolerance on the function value at the minimum 215s Precision : -1.000000Relative floating point arithmetic precision 215s PrintLevel : 0 Minimizer internal print level 215s MaxFunctionCalls : 0 Maximum number of function calls 215s --- OptionString --------------------------------------------------------------- 215s Strategy=1;ErrorDef=1.000000;Tolerance=0.010000;Precision=-1.000000;PrintLevel=0;MaxFunctionCalls=0; 215s --- Status --------------------------------------------------------------------- 215s CovMatrixStatus : Full accurate 215s Edm : 3.4106880820e-08 215s MinValue : 3.5901023245e-08 215s ProvidesError : Provides parameters error and error matrix 215s Status : OK, valid minimum 215s functionCalls : 185 215s --- FitParameters -------------------------------------------------------------- 215s Name StartValue Limits FitValue Error 215s amp 1.000e+00 lowerLimited(2.23e-308) 1.000e+01 3.030e-02 215s decay 1.000e-01 lowerLimited(2.23e-308) 5.000e-02 3.664e-04 215s phase 1.000e-01 limited(0.00e+00,3.10e+00) 1.000e+00 4.549e-03 215s frequency 1.000e+00 lowerLimited(2.23e-308) 4.000e+00 2.002e-03 215s --- Correlations --------------------------------------------------------------- 215s #0 1.0000 0.5631 -0.0032 -0.0077 215s #1 0.5631 1.0000 -0.0015 -0.0000 215s #2 -0.0032 -0.0015 1.0000 -0.8120 215s #3 -0.0077 -0.0000 -0.8120 1.0000 215s 215s Done with decaying sin function 215s 215s . 215s ---------------------------------------------------------------------- 215s Ran 1 test in 0.003s 215s 215s OK 215s ...testRotationX #1 diff 5.08e-15 215s testRotationX #2 diff 5.08e-15 215s testRotationX #3 diff 5.08e-15 215s testRotationX #4 diff 5.10e-15 215s testRotationY #1 diff 7.86e-16 215s testRotationY #2 diff 7.86e-16 215s testRotationY #3 diff 7.86e-16 215s testRotationY #4 diff 7.60e-16 215s testRotationZ #1 diff 1.52e-16 215s testRotationZ #2 diff 1.52e-16 215s testRotationZ #3 diff 0.00e+00 215s testRotationZ #4 diff 1.52e-16 215s testRotationZ #5 diff 1.52e-16 215s testRotationX #1 diff 5.36e-15 215s . 215s ---------------------------------------------------------------------- 215s Ran 4 tests in 0.033s 215s 215s OK 216s 216s Compares two simulation intended to provide identical results. 216s Simulation #1: spherical particle on top of substrate 216s Simulation #2: spherical compound on top of substrate, where 216s top and bottom are made of same material. 216s 216s 216s Compares two simulation intended to provide identical results. 216s Simulation #1: spherical particle compound on top of substrate 216s Simulation #2: same, but made using rotation 216s 216s . 216s Compares two simulation intended to provide identical results. 216s Simulation #1: spherical particle on top of substrate. 216s Simulation #2: spherical compound on top of substrate, 216s where top and bottom are made of same material. 216s Both particles are inserted in vacuum layer with shift to go below interface 216s 216s . 216s Compares two simulation intended to provide identical results. 216s Simulation #1: truncated sphere on top of substrate. 216s Simulation #2: spherical particle compound crossing the interface. 216s Bottom part of compound is made from substrate material. 216s both cases should look like a truncated sphere on top of substrate. 216s 216s .. 216s ---------------------------------------------------------------------- 216s Ran 4 tests in 0.105s 216s 216s OK 216s . 216s ---------------------------------------------------------------------- 216s Ran 1 test in 0.184s 216s 216s OK 217s - OK: relative deviation of dat from ref is 2.1467e-17, within given threshold 1e-14 217s - OK: relative deviation of dat from ref is 2.10178e-17, within given threshold 1e-14 217s ..test_CoreShellBoxRotateY: 2.0767797511872584e-15 217s test_CoreShellBoxRotateZ: 1.8524682515739763e-16 217s test_CoreShellBoxRotateZandY: 5.294229074450745e-14 217s test_SameMaterialCoreShell: 0.0 217s .. 217s ---------------------------------------------------------------------- 217s Ran 4 tests in 0.018s 217s 217s OK 217s .....test_BoxComposition: 1.6539958540678196e-15 217s test_BoxCompositionRotateX: 1.2627738922070058e-14 217s test_BoxCompositionRotateY: 1.0504603030143024e-14 217s test_BoxCompositionRotateZ: 1.3402545763298733e-14 217s test_BoxCompositionRotateZandY: 4.836540376954527e-14 217s test_BoxStackComposition: 1.9646771848594672e-14 217s . 217s ---------------------------------------------------------------------- 217s Ran 6 tests in 0.027s 217s 217s OK 217s .. 217s ---------------------------------------------------------------------- 217s Ran 2 tests in 0.000s 217s 217s OK 218s .. 218s ---------------------------------------------------------------------- 218s Ran 2 tests in 0.002s 218s 218s OK 218s .. 218s ---------------------------------------------------------------------- 218s Ran 2 tests in 0.010s 218s 218s OK 218s autopkgtest [13:21:52]: test python3: -----------------------] 219s autopkgtest [13:21:53]: test python3: - - - - - - - - - - results - - - - - - - - - - 219s python3 PASS 219s autopkgtest [13:21:53]: @@@@@@@@@@@@@@@@@@@@ summary 219s python3 PASS 231s nova [W] Skipping flock for amd64 231s Creating nova instance adt-oracular-amd64-bornagain-20240723-131812-juju-7f2275-prod-proposed-migration-environment-2-221a26fb-8ba5-4d59-812c-1aef7c86b317 from image adt/ubuntu-oracular-amd64-server-20240722.img (UUID bc70dd19-bfc6-4d23-903d-48876650ffb2)...