1s autopkgtest [20:50:43]: starting date and time: 2024-07-20 20:50:43+0000 1s autopkgtest [20:50:43]: git checkout: fd3bed09 nova: allow more retries for quota issues 1s autopkgtest [20:50:43]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s5gfxlwb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade bornagain --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.4-1 python3-stdlib-extensions/3.12.4-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-62.secgroup --name adt-oracular-amd64-bornagain-20240720-205041-juju-7f2275-prod-proposed-migration-environment-3-985a1467-6ebd-4181-9c61-1fadfd6b4855 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 161s autopkgtest [20:53:23]: testbed dpkg architecture: amd64 162s autopkgtest [20:53:24]: testbed apt version: 2.9.6 162s autopkgtest [20:53:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 162s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 162s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4092 B] 162s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [63.6 kB] 162s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 162s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [401 kB] 162s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [89.5 kB] 162s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [121 kB] 162s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 162s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 162s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 162s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 162s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [574 kB] 162s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [401 kB] 162s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 162s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 162s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [8604 B] 162s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 163s Fetched 1855 kB in 0s (6445 kB/s) 163s Reading package lists... 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Calculating upgrade... 166s The following packages will be upgraded: 166s libheif-plugin-aomdec libheif-plugin-aomenc libheif-plugin-libde265 libheif1 166s libpython3-stdlib python3 python3-gdbm python3-minimal 166s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Need to get 388 kB of archives. 166s After this operation, 30.7 kB of additional disk space will be used. 166s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-minimal amd64 3.12.4-1 [27.1 kB] 166s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3 amd64 3.12.4-1 [24.0 kB] 166s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpython3-stdlib amd64 3.12.4-1 [9818 B] 166s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-gdbm amd64 3.12.4-2 [18.2 kB] 166s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-aomdec amd64 1.17.6-4build1 [10.3 kB] 166s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-aomenc amd64 1.17.6-4build1 [14.8 kB] 166s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif1 amd64 1.17.6-4build1 [276 kB] 166s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-libde265 amd64 1.17.6-4build1 [8328 B] 166s Fetched 388 kB in 0s (16.8 MB/s) 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 166s Preparing to unpack .../python3-minimal_3.12.4-1_amd64.deb ... 166s Unpacking python3-minimal (3.12.4-1) over (3.12.3-0ubuntu1) ... 166s Setting up python3-minimal (3.12.4-1) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74487 files and directories currently installed.) 166s Preparing to unpack .../0-python3_3.12.4-1_amd64.deb ... 166s Unpacking python3 (3.12.4-1) over (3.12.3-0ubuntu1) ... 167s Preparing to unpack .../1-libpython3-stdlib_3.12.4-1_amd64.deb ... 167s Unpacking libpython3-stdlib:amd64 (3.12.4-1) over (3.12.3-0ubuntu1) ... 167s Preparing to unpack .../2-python3-gdbm_3.12.4-2_amd64.deb ... 167s Unpacking python3-gdbm:amd64 (3.12.4-2) over (3.12.3-0ubuntu1) ... 167s Preparing to unpack .../3-libheif-plugin-aomdec_1.17.6-4build1_amd64.deb ... 167s Unpacking libheif-plugin-aomdec:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 167s Preparing to unpack .../4-libheif-plugin-aomenc_1.17.6-4build1_amd64.deb ... 167s Unpacking libheif-plugin-aomenc:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 167s Preparing to unpack .../5-libheif1_1.17.6-4build1_amd64.deb ... 167s Unpacking libheif1:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 167s Preparing to unpack .../6-libheif-plugin-libde265_1.17.6-4build1_amd64.deb ... 167s Unpacking libheif-plugin-libde265:amd64 (1.17.6-4build1) over (1.17.6-3build2) ... 167s Setting up libpython3-stdlib:amd64 (3.12.4-1) ... 167s Setting up python3 (3.12.4-1) ... 167s Setting up python3-gdbm:amd64 (3.12.4-2) ... 167s Setting up libheif-plugin-aomdec:amd64 (1.17.6-4build1) ... 167s Setting up libheif1:amd64 (1.17.6-4build1) ... 167s Setting up libheif-plugin-libde265:amd64 (1.17.6-4build1) ... 167s Setting up libheif-plugin-aomenc:amd64 (1.17.6-4build1) ... 167s Processing triggers for libc-bin (2.39-0ubuntu9) ... 167s Processing triggers for man-db (2.12.1-2) ... 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 169s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 169s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 169s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 169s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 170s Reading package lists... 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Calculating upgrade... 171s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 171s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 172s autopkgtest [20:53:34]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 172s autopkgtest [20:53:34]: @@@@@@@@@@@@@@@@@@@@ apt-source bornagain 174s Get:1 http://ftpmaster.internal/ubuntu oracular/universe bornagain 21.1+ds3-5build1 (dsc) [2917 B] 174s Get:2 http://ftpmaster.internal/ubuntu oracular/universe bornagain 21.1+ds3-5build1 (tar) [47.7 MB] 174s Get:3 http://ftpmaster.internal/ubuntu oracular/universe bornagain 21.1+ds3-5build1 (diff) [10.1 kB] 174s gpgv: Signature made Sat Jun 1 07:29:34 2024 UTC 174s gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 174s gpgv: Can't check signature: No public key 174s dpkg-source: warning: cannot verify inline signature for ./bornagain_21.1+ds3-5build1.dsc: no acceptable signature found 175s autopkgtest [20:53:37]: testing package bornagain version 21.1+ds3-5build1 175s autopkgtest [20:53:37]: build not needed 176s autopkgtest [20:53:38]: test python3: preparing testbed 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 178s Starting pkgProblemResolver with broken count: 0 178s Starting 2 pkgProblemResolver with broken count: 0 178s Done 178s The following additional packages will be installed: 178s blt fonts-lyx libblas3 libboost-iostreams1.83.0 libcerf2 libfftw3-double3 178s libformfactor0.3.0 libgfortran5 libgomp1 libgraphite2-3 libgsl27 178s libgslcblas0 libharfbuzz0b libimagequant0 libjs-jquery libjs-jquery-ui 178s liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libpython3.12t64 libqhull-r8.0 178s libraqm0 libtcl8.6 libtiffxx6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2 178s libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 178s python3-appdirs python3-bornagain python3-brotli python3-contourpy 178s python3-cycler python3-dateutil python3-decorator python3-fonttools 178s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 178s python3-mpmath python3-numpy python3-packaging python3-pil 178s python3-pil.imagetk python3-scipy python3-sympy python3-tk python3-ufolib2 178s tk8.6-blt2.5 unicode-data x11-common 178s Suggested packages: 178s blt-demo libfftw3-bin libfftw3-dev gsl-ref-psdoc | gsl-doc-pdf 178s | gsl-doc-info | gsl-ref-html libjs-jquery-ui-docs liblcms2-utils tcl8.6 178s tk8.6 python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 178s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 178s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 178s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 178s python3-gmpy2 gcc gfortran python-numpy-doc python3-dev python3-pytest 178s python-pil-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix 178s python3-tk-dbg 178s Recommended packages: 178s javascript-common python3-bs4 python3-cssselect python3-html5lib 178s python3-olefile g++ | c++-compiler isympy-common 178s The following NEW packages will be installed: 178s autopkgtest-satdep blt fonts-lyx libblas3 libboost-iostreams1.83.0 libcerf2 178s libfftw3-double3 libformfactor0.3.0 libgfortran5 libgomp1 libgraphite2-3 178s libgsl27 libgslcblas0 libharfbuzz0b libimagequant0 libjs-jquery 178s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 178s libpython3.12t64 libqhull-r8.0 libraqm0 libtcl8.6 libtiffxx6 libtk8.6 178s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 178s python-matplotlib-data python3-all python3-appdirs python3-bornagain 178s python3-brotli python3-contourpy python3-cycler python3-dateutil 178s python3-decorator python3-fonttools python3-fs python3-kiwisolver 178s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 178s python3-packaging python3-pil python3-pil.imagetk python3-scipy 178s python3-sympy python3-tk python3-ufolib2 tk8.6-blt2.5 unicode-data 178s x11-common 178s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 178s Need to get 63.4 MB/63.4 MB of archives. 178s After this operation, 269 MB of additional disk space will be used. 178s Get:1 /tmp/autopkgtest.dfFVn8/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [716 B] 178s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 178s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 178s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 178s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 178s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 178s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 178s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 178s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 178s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.1-2 [171 kB] 178s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 178s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-3ubuntu1 [259 kB] 178s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcerf2 amd64 2.4-2build1 [27.4 kB] 178s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-4ubuntu2 [148 kB] 178s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libfftw3-double3 amd64 3.3.10-1ubuntu3 [838 kB] 178s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 libformfactor0.3.0 amd64 0.3.1-1 [62.7 kB] 178s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-4ubuntu2 [909 kB] 178s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 178s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgslcblas0 amd64 2.7.1+dfsg-6ubuntu2 [104 kB] 178s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgsl27 amd64 2.7.1+dfsg-6ubuntu2 [987 kB] 178s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 178s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 178s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 178s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 178s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 178s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 178s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 178s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libpython3.12t64 amd64 3.12.4-1ubuntu1 [2341 kB] 178s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 178s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 178s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libtiffxx6 amd64 4.5.1+git230720-4ubuntu3 [5734 B] 178s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 178s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 178s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 178s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 178s Get:36 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-all amd64 3.12.4-1 [882 B] 178s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 178s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 178s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 178s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.4.0-1 [462 kB] 178s Get:41 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-tk amd64 3.12.4-2 [113 kB] 178s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.4.0-1 [9264 B] 178s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 178s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 178s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 178s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 178s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 178s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 179s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 179s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 179s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 179s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 179s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.2-1 [1243 kB] 179s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 179s Get:55 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 179s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 179s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 179s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.1-1 [41.4 kB] 179s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB] 179s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bornagain amd64 21.1+ds3-5build1 [2878 kB] 179s Fetched 63.4 MB in 1s (119 MB/s) 179s Selecting previously unselected package libtcl8.6:amd64. 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74490 files and directories currently installed.) 179s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 179s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 179s Selecting previously unselected package libxrender1:amd64. 179s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 179s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 179s Selecting previously unselected package libxft2:amd64. 179s Preparing to unpack .../02-libxft2_2.3.6-1build1_amd64.deb ... 179s Unpacking libxft2:amd64 (2.3.6-1build1) ... 179s Selecting previously unselected package x11-common. 179s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 179s Unpacking x11-common (1:7.7+23ubuntu3) ... 179s Selecting previously unselected package libxss1:amd64. 179s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_amd64.deb ... 179s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 179s Selecting previously unselected package libtk8.6:amd64. 179s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_amd64.deb ... 179s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 180s Selecting previously unselected package tk8.6-blt2.5. 180s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 180s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 180s Selecting previously unselected package blt. 180s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_amd64.deb ... 180s Unpacking blt (2.5.3+dfsg-7build1) ... 180s Selecting previously unselected package fonts-lyx. 180s Preparing to unpack .../08-fonts-lyx_2.4.1-2_all.deb ... 180s Unpacking fonts-lyx (2.4.1-2) ... 180s Selecting previously unselected package libblas3:amd64. 180s Preparing to unpack .../09-libblas3_3.12.0-3build1_amd64.deb ... 180s Unpacking libblas3:amd64 (3.12.0-3build1) ... 180s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 180s Preparing to unpack .../10-libboost-iostreams1.83.0_1.83.0-3ubuntu1_amd64.deb ... 180s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-3ubuntu1) ... 180s Selecting previously unselected package libcerf2. 180s Preparing to unpack .../11-libcerf2_2.4-2build1_amd64.deb ... 180s Unpacking libcerf2 (2.4-2build1) ... 180s Selecting previously unselected package libgomp1:amd64. 180s Preparing to unpack .../12-libgomp1_14.1.0-4ubuntu2_amd64.deb ... 180s Unpacking libgomp1:amd64 (14.1.0-4ubuntu2) ... 180s Selecting previously unselected package libfftw3-double3:amd64. 180s 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(1.12-8) ... 182s Selecting previously unselected package python3-fs. 182s Preparing to unpack .../50-python3-fs_2.4.16-4_all.deb ... 182s Unpacking python3-fs (2.4.16-4) ... 182s Selecting previously unselected package python3-lxml:amd64. 182s Preparing to unpack .../51-python3-lxml_5.2.2-1_amd64.deb ... 182s Unpacking python3-lxml:amd64 (5.2.2-1) ... 182s Selecting previously unselected package python3-lz4. 182s Preparing to unpack .../52-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 182s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 182s Selecting previously unselected package unicode-data. 182s Preparing to unpack .../53-unicode-data_15.1.0-1_all.deb ... 182s Unpacking unicode-data (15.1.0-1) ... 183s Selecting previously unselected package python3-fonttools. 183s Preparing to unpack .../54-python3-fonttools_4.46.0-1build2_amd64.deb ... 183s Unpacking python3-fonttools (4.46.0-1build2) ... 183s Selecting previously unselected package python3-kiwisolver. 183s Preparing to unpack .../55-python3-kiwisolver_1.4.5-1_amd64.deb ... 183s Unpacking python3-kiwisolver (1.4.5-1) ... 183s Selecting previously unselected package python3-packaging. 183s Preparing to unpack .../56-python3-packaging_24.1-1_all.deb ... 183s Unpacking python3-packaging (24.1-1) ... 183s Selecting previously unselected package python3-matplotlib. 183s Preparing to unpack .../57-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ... 183s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 183s Selecting previously unselected package python3-bornagain. 183s Preparing to unpack .../58-python3-bornagain_21.1+ds3-5build1_amd64.deb ... 183s Unpacking python3-bornagain (21.1+ds3-5build1) ... 183s Selecting previously unselected package autopkgtest-satdep. 183s Preparing to unpack .../59-1-autopkgtest-satdep.deb ... 183s Unpacking autopkgtest-satdep (0) ... 183s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 183s Setting up liblcms2-2:amd64 (2.14-2build1) ... 183s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 183s Setting up libgslcblas0:amd64 (2.7.1+dfsg-6ubuntu2) ... 183s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 183s Setting up fonts-lyx (2.4.1-2) ... 183s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 183s Setting up x11-common (1:7.7+23ubuntu3) ... 184s Setting up libcerf2 (2.4-2build1) ... 184s Setting up libgsl27:amd64 (2.7.1+dfsg-6ubuntu2) ... 184s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 184s Setting up python3-all (3.12.4-1) ... 184s Setting up libgomp1:amd64 (14.1.0-4ubuntu2) ... 184s Setting up unicode-data (15.1.0-1) ... 184s Setting up libpython3.12t64:amd64 (3.12.4-1ubuntu1) ... 184s Setting up python3-decorator (5.1.1-5) ... 184s Setting up libblas3:amd64 (3.12.0-3build1) ... 184s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 184s Setting up python3-packaging (24.1-1) ... 184s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-3ubuntu1) ... 184s Setting up python3-brotli (1.1.0-2build2) ... 184s Setting up python3-cycler (0.12.1-1) ... 184s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 184s Setting up python3-kiwisolver (1.4.5-1) ... 184s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 184s Setting up libformfactor0.3.0:amd64 (0.3.1-1) ... 184s Setting up libfftw3-double3:amd64 (3.3.10-1ubuntu3) ... 184s Setting up libgfortran5:amd64 (14.1.0-4ubuntu2) ... 184s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 184s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 184s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... 184s Setting up python3-dateutil (2.9.0-2) ... 185s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 185s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 185s Setting up python3-mpmath (1.3.0-1) ... 185s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 185s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 185s Setting up libtiffxx6:amd64 (4.5.1+git230720-4ubuntu3) ... 185s Setting up python3-appdirs (1.4.4-4) ... 185s Setting up python3-sympy (1.12-8) ... 191s Setting up liblapack3:amd64 (3.12.0-3build1) ... 191s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 191s Setting up libxft2:amd64 (2.3.6-1build1) ... 191s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 191s Setting up python3-fs (2.4.16-4) ... 191s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 191s Setting up libraqm0:amd64 (0.10.1-1build1) ... 191s Setting up python3-numpy (1:1.26.4+ds-10) ... 193s Setting up python3-lxml:amd64 (5.2.2-1) ... 193s Setting up python3-contourpy (1.0.7-3) ... 193s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 193s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 193s Setting up python3-scipy (1.12.0-2) ... 196s Setting up blt (2.5.3+dfsg-7build1) ... 196s Setting up python3-tk:amd64 (3.12.4-2) ... 197s Setting up python3-pil:amd64 (10.4.0-1) ... 197s Setting up python3-pil.imagetk:amd64 (10.4.0-1) ... 197s Setting up python3-fonttools (4.46.0-1build2) ... 198s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 198s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 199s Setting up python3-bornagain (21.1+ds3-5build1) ... 200s Setting up autopkgtest-satdep (0) ... 200s Processing triggers for libc-bin (2.39-0ubuntu9) ... 200s Processing triggers for man-db (2.12.1-2) ... 203s (Reading database ... 81132 files and directories currently installed.) 203s Removing autopkgtest-satdep (0) ... 203s autopkgtest [20:54:05]: test python3: [----------------------- 203s Testing with python3.12: 203s ... 203s ---------------------------------------------------------------------- 203s Ran 3 tests in 0.001s 203s 203s OK 204s ... 204s ---------------------------------------------------------------------- 204s Ran 3 tests in 0.004s 204s 204s OK 204s . 204s ---------------------------------------------------------------------- 204s Ran 1 test in 0.016s 204s 204s OK 204s 204s Standalone fit test: Decaying sin function 204s -------------------------------------------------------------------------------- 204s Run time (sec) : 0 204s Objective function calls : 185 204s Gradient calls : 0 204s -------------------------------------------------------------------------------- 204s MinimizerType : Minuit2 204s AlgorithmName : Migrad 204s --- Options -------------------------------------------------------------------- 204s Strategy : 1 Minimization strategy (0-low, 1-medium, 2-high quality) 204s ErrorDef : 1.000000Error definition factor for parameter error calculation 204s Tolerance : 0.010000Tolerance on the function value at the minimum 204s Precision : -1.000000Relative floating point arithmetic precision 204s PrintLevel : 0 Minimizer internal print level 204s MaxFunctionCalls : 0 Maximum number of function calls 204s --- OptionString --------------------------------------------------------------- 204s Strategy=1;ErrorDef=1.000000;Tolerance=0.010000;Precision=-1.000000;PrintLevel=0;MaxFunctionCalls=0; 204s --- Status --------------------------------------------------------------------- 204s CovMatrixStatus : Full accurate 204s Edm : 3.4106880820e-08 204s MinValue : 3.5901023245e-08 204s ProvidesError : Provides parameters error and error matrix 204s Status : OK, valid minimum 204s functionCalls : 185 204s --- FitParameters -------------------------------------------------------------- 204s Name StartValue Limits FitValue Error 204s amp 1.000e+00 lowerLimited(2.23e-308) 1.000e+01 3.030e-02 204s decay 1.000e-01 lowerLimited(2.23e-308) 5.000e-02 3.664e-04 204s phase 1.000e-01 limited(0.00e+00,3.10e+00) 1.000e+00 4.549e-03 204s frequency 1.000e+00 lowerLimited(2.23e-308) 4.000e+00 2.002e-03 204s --- Correlations --------------------------------------------------------------- 204s #0 1.0000 0.5631 -0.0032 -0.0077 204s #1 0.5631 1.0000 -0.0015 -0.0000 204s #2 -0.0032 -0.0015 1.0000 -0.8120 204s #3 -0.0077 -0.0000 -0.8120 1.0000 204s 204s Done with decaying sin function 204s 204s . 204s ---------------------------------------------------------------------- 204s Ran 1 test in 0.004s 204s 204s OK 204s .... 204s ---------------------------------------------------------------------- 204s testRotationX #1 diff 5.08e-15 204s testRotationX #2 diff 5.08e-15 204s testRotationX #3 diff 5.08e-15 204s testRotationX #4 diff 5.10e-15 204s testRotationY #1 diff 7.86e-16 204s testRotationY #2 diff 7.86e-16 204s testRotationY #3 diff 7.86e-16 204s testRotationY #4 diff 7.60e-16 204s testRotationZ #1 diff 1.52e-16 204s testRotationZ #2 diff 1.52e-16 204s testRotationZ #3 diff 0.00e+00 204s testRotationZ #4 diff 1.52e-16 204s testRotationZ #5 diff 1.52e-16 204s testRotationX #1 diff 5.36e-15 204s Ran 4 tests in 0.023s 204s 204s OK 204s 204s Compares two simulation intended to provide identical results. 204s Simulation #1: spherical particle on top of substrate 204s Simulation #2: spherical compound on top of substrate, where 204s top and bottom are made of same material. 204s 204s . 204s Compares two simulation intended to provide identical results. 204s Simulation #1: spherical particle compound on top of substrate 204s Simulation #2: same, but made using rotation 204s 204s . 204s Compares two simulation intended to provide identical results. 204s Simulation #1: spherical particle on top of substrate. 204s Simulation #2: spherical compound on top of substrate, 204s where top and bottom are made of same material. 204s Both particles are inserted in vacuum layer with shift to go below interface 204s 204s 204s Compares two simulation intended to provide identical results. 204s Simulation #1: truncated sphere on top of substrate. 204s Simulation #2: spherical particle compound crossing the interface. 204s Bottom part of compound is made from substrate material. 204s both cases should look like a truncated sphere on top of substrate. 204s 204s .. 204s ---------------------------------------------------------------------- 204s Ran 4 tests in 0.074s 204s 204s OK 205s . 205s ---------------------------------------------------------------------- 205s Ran 1 test in 0.102s 205s 205s OK 205s - OK: relative deviation of dat from ref is 2.1467e-17, within given threshold 1e-14 205s - OK: relative deviation of dat from ref is 2.10178e-17, within given threshold 1e-14 205s ...test_CoreShellBoxRotateY: 2.0767797511872584e-15 205s test_CoreShellBoxRotateZ: 1.8524682515739763e-16 205s test_CoreShellBoxRotateZandY: 5.294229074450745e-14 205s test_SameMaterialCoreShell: 0.0 205s . 205s ---------------------------------------------------------------------- 205s Ran 4 tests in 0.015s 205s 205s OK 205s .....test_BoxComposition: 1.6539958540678196e-15 205s test_BoxCompositionRotateX: 1.2627738922070058e-14 205s test_BoxCompositionRotateY: 1.0504603030143024e-14 205s test_BoxCompositionRotateZ: 1.3402545763298733e-14 205s test_BoxCompositionRotateZandY: 4.836540376954527e-14 205s test_BoxStackComposition: 1.9646771848594672e-14 205s . 205s ---------------------------------------------------------------------- 205s Ran 6 tests in 0.021s 205s 205s OK 205s .. 205s ---------------------------------------------------------------------- 205s Ran 2 tests in 0.000s 205s 205s OK 206s .. 206s ---------------------------------------------------------------------- 206s Ran 2 tests in 0.002s 206s 206s OK 206s .. 206s ---------------------------------------------------------------------- 206s Ran 2 tests in 0.010s 206s 206s OK 206s autopkgtest [20:54:08]: test python3: -----------------------] 206s python3 PASS 206s autopkgtest [20:54:08]: test python3: - - - - - - - - - - results - - - - - - - - - - 206s autopkgtest [20:54:08]: @@@@@@@@@@@@@@@@@@@@ summary 206s python3 PASS 216s nova [W] Skipping flock for amd64 216s Creating nova instance adt-oracular-amd64-bornagain-20240720-205041-juju-7f2275-prod-proposed-migration-environment-3-985a1467-6ebd-4181-9c61-1fadfd6b4855 from image adt/ubuntu-oracular-amd64-server-20240720.img (UUID 7d1e67ab-b95e-41e3-9f93-a01c05dbb6a2)...