0s autopkgtest [17:47:45]: starting date and time: 2024-07-09 17:47:45+0000 0s autopkgtest [17:47:45]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [17:47:45]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.33b2lxz4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python-jsonschema --apt-upgrade bmtk --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-jsonschema/4.19.2-3ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-100.secgroup --name adt-oracular-amd64-bmtk-20240709-174745-juju-7f2275-prod-proposed-migration-environment-3-e79c9b78-475e-4ce5-a8f3-0bf0cb477f35 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 339s autopkgtest [17:53:24]: testbed dpkg architecture: amd64 339s autopkgtest [17:53:24]: testbed apt version: 2.9.6 339s autopkgtest [17:53:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 339s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 339s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 339s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [348 kB] 339s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [53.3 kB] 339s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 339s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [109 kB] 339s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [82.2 kB] 339s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2472 B] 339s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 339s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 339s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 339s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [347 kB] 339s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [213 kB] 339s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [10.5 kB] 339s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B] 339s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 339s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 340s Fetched 1356 kB in 0s (4857 kB/s) 340s Reading package lists... 369s Reading package lists... 369s Building dependency tree... 369s Reading state information... 369s Calculating upgrade... 370s The following NEW packages will be installed: 370s python3-hatch-vcs python3-hatchling python3-jsonschema-specifications 370s python3-packaging python3-pathspec python3-pluggy python3-referencing 370s python3-rpds-py python3-setuptools-scm python3-trove-classifiers 370s The following packages will be upgraded: 370s dracut-install libaom3 python3-jsonschema 370s 3 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 370s Need to get 2495 kB of archives. 370s After this operation, 1907 kB of additional disk space will be used. 370s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 dracut-install amd64 102-3ubuntu4 [33.1 kB] 370s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libaom3 amd64 3.9.1-1 [1933 kB] 370s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 370s Get:4 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pathspec all 0.12.1-1 [24.5 kB] 370s Get:5 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 370s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-trove-classifiers all 2024.4.10-1 [10.6 kB] 370s Get:7 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-hatchling all 1.25.0-1 [54.8 kB] 370s Get:8 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-setuptools-scm all 8.1.0-1 [32.2 kB] 370s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-hatch-vcs all 0.4.0-1 [7904 B] 370s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-rpds-py amd64 0.12.0-3build1 [242 kB] 370s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-referencing all 0.31.0-1 [20.8 kB] 370s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-jsonschema-specifications all 2023.12.1-1 [9108 B] 370s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-jsonschema all 4.19.2-3ubuntu1 [65.4 kB] 370s Fetched 2495 kB in 0s (27.1 MB/s) 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74466 files and directories currently installed.) 370s Preparing to unpack .../00-dracut-install_102-3ubuntu4_amd64.deb ... 370s Unpacking dracut-install (102-3ubuntu4) over (102-3ubuntu3) ... 370s Preparing to unpack .../01-libaom3_3.9.1-1_amd64.deb ... 370s Unpacking libaom3:amd64 (3.9.1-1) over (3.8.2-3) ... 370s Selecting previously unselected package python3-packaging. 370s Preparing to unpack .../02-python3-packaging_24.0-1_all.deb ... 370s Unpacking python3-packaging (24.0-1) ... 370s Selecting previously unselected package python3-pathspec. 370s Preparing to unpack .../03-python3-pathspec_0.12.1-1_all.deb ... 370s Unpacking python3-pathspec (0.12.1-1) ... 370s Selecting previously unselected package python3-pluggy. 370s Preparing to unpack .../04-python3-pluggy_1.5.0-1_all.deb ... 370s Unpacking python3-pluggy (1.5.0-1) ... 370s Selecting previously unselected package python3-trove-classifiers. 370s Preparing to unpack .../05-python3-trove-classifiers_2024.4.10-1_all.deb ... 370s Unpacking python3-trove-classifiers (2024.4.10-1) ... 370s Selecting previously unselected package python3-hatchling. 370s Preparing to unpack .../06-python3-hatchling_1.25.0-1_all.deb ... 370s Unpacking python3-hatchling (1.25.0-1) ... 370s Selecting previously unselected package python3-setuptools-scm. 370s Preparing to unpack .../07-python3-setuptools-scm_8.1.0-1_all.deb ... 370s Unpacking python3-setuptools-scm (8.1.0-1) ... 370s Selecting previously unselected package python3-hatch-vcs. 370s Preparing to unpack .../08-python3-hatch-vcs_0.4.0-1_all.deb ... 370s Unpacking python3-hatch-vcs (0.4.0-1) ... 370s Selecting previously unselected package python3-rpds-py. 370s Preparing to unpack .../09-python3-rpds-py_0.12.0-3build1_amd64.deb ... 370s Unpacking python3-rpds-py (0.12.0-3build1) ... 371s Selecting previously unselected package python3-referencing. 371s Preparing to unpack .../10-python3-referencing_0.31.0-1_all.deb ... 371s Unpacking python3-referencing (0.31.0-1) ... 371s Selecting previously unselected package python3-jsonschema-specifications. 371s Preparing to unpack .../11-python3-jsonschema-specifications_2023.12.1-1_all.deb ... 371s Unpacking python3-jsonschema-specifications (2023.12.1-1) ... 371s Preparing to unpack .../12-python3-jsonschema_4.19.2-3ubuntu1_all.deb ... 371s Unpacking python3-jsonschema (4.19.2-3ubuntu1) over (4.10.3-2ubuntu1) ... 371s Setting up libaom3:amd64 (3.9.1-1) ... 371s Setting up python3-packaging (24.0-1) ... 371s Setting up python3-pluggy (1.5.0-1) ... 371s Setting up python3-rpds-py (0.12.0-3build1) ... 371s Setting up dracut-install (102-3ubuntu4) ... 371s Setting up python3-trove-classifiers (2024.4.10-1) ... 371s Setting up python3-pathspec (0.12.1-1) ... 371s Setting up python3-referencing (0.31.0-1) ... 371s Setting up python3-setuptools-scm (8.1.0-1) ... 372s Setting up python3-hatchling (1.25.0-1) ... 372s Setting up python3-hatch-vcs (0.4.0-1) ... 372s Setting up python3-jsonschema-specifications (2023.12.1-1) ... 372s Setting up python3-jsonschema (4.19.2-3ubuntu1) ... 372s Processing triggers for libc-bin (2.39-0ubuntu9) ... 372s Reading package lists... 373s Building dependency tree... 373s Reading state information... 373s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 373s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 373s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 373s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 373s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 374s Reading package lists... 374s Reading package lists... 375s Building dependency tree... 375s Reading state information... 375s Calculating upgrade... 375s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 375s Reading package lists... 375s Building dependency tree... 375s Reading state information... 376s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 377s autopkgtest [17:54:02]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 377s autopkgtest [17:54:02]: @@@@@@@@@@@@@@@@@@@@ apt-source bmtk 380s Get:1 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (dsc) [2822 B] 380s Get:2 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (tar) [61.4 MB] 380s Get:3 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (diff) [9240 B] 380s gpgv: Signature made Wed Apr 24 10:27:34 2024 UTC 380s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 380s gpgv: issuer "emollier@debian.org" 380s gpgv: Can't check signature: No public key 380s dpkg-source: warning: cannot verify inline signature for ./bmtk_1.1.0+ds-1.dsc: no acceptable signature found 382s autopkgtest [17:54:07]: testing package bmtk version 1.1.0+ds-1 382s autopkgtest [17:54:07]: build not needed 383s autopkgtest [17:54:08]: test run-unit-test: preparing testbed 384s Reading package lists... 384s Building dependency tree... 384s Reading state information... 384s Starting pkgProblemResolver with broken count: 0 385s Starting 2 pkgProblemResolver with broken count: 0 385s Done 385s The following additional packages will be installed: 385s blt fonts-bebas-neue fonts-lyx fonts-mathjax libaec0 libamd-comgr2 385s libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 385s libfabric1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 385s libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 libhsakmt1 385s libhwloc-plugins libhwloc15 libimagequant0 libjs-jquery libjs-jquery-ui 385s libjs-mathjax libjs-requirejs libjs-sphinxdoc libjs-underscore liblapack3 385s liblbfgsb0 liblcms2-2 libllvm17t64 liblzf1 libmunge2 libopenjp2-7 385s libopenmpi3t64 libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 385s libqhull-r8.0 libraqm0 librdmacm1t64 libsz2 libtcl8.6 libtk8.6 libucx0 385s libwebpdemux2 libwebpmux3 libxft2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 385s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 385s python-matplotlib-data python3-all python3-appdirs python3-bmtk 385s python3-bmtk-doc python3-bmtk-examples python3-brotli python3-contourpy 385s python3-cycler python3-dateutil python3-decorator python3-fonttools 385s python3-fs python3-h5py python3-h5py-serial python3-imageio 385s python3-iniconfig python3-kiwisolver python3-lazy-loader python3-lxml 385s python3-lz4 python3-matplotlib python3-mpi4py python3-mpmath 385s python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-pil 385s python3-pil.imagetk python3-pytest python3-scipy python3-skimage 385s python3-skimage-lib python3-sympy python3-tifffile python3-tk 385s python3-ufolib2 python3-unicodedata2 tk8.6-blt2.5 unicode-data x11-common 385s Suggested packages: 385s blt-demo libhwloc-contrib-plugins libjs-jquery-ui-docs fonts-mathjax-extras 385s fonts-stix libjs-mathjax-doc liblcms2-utils tcl8.6 tk8.6 opencl-icd gfortran 385s | fortran-compiler python-cycler-doc python-h5py-doc python-imageio-doc 385s python3-astropy python3-gdal ffmpeg python-lxml-doc cm-super-minimal dvipng 385s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 385s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 385s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 385s python3-gmpy2 python3-pydot python3-pygraphviz gcc gfortran python-numpy-doc 385s python3-dev python-pandas-doc python3-statsmodels python-pil-doc 385s python-scipy-doc python-skimage-doc texlive-fonts-extra python-sympy-doc 385s python3-fsspec tix python3-tk-dbg 385s Recommended packages: 385s javascript-common python3-neuron python3-bs4 python3-cssselect 385s python3-html5lib python3-bottleneck python3-numexpr python3-odf 385s python3-openpyxl python3-tables python3-numba python3-olefile g++ 385s | c++-compiler python3-dask isympy-common 385s The following NEW packages will be installed: 385s autopkgtest-satdep blt fonts-bebas-neue fonts-lyx fonts-mathjax libaec0 385s libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 385s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 libgraphite2-3 385s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 385s libhsakmt1 libhwloc-plugins libhwloc15 libimagequant0 libjs-jquery 385s libjs-jquery-ui libjs-mathjax libjs-requirejs libjs-sphinxdoc 385s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libllvm17t64 liblzf1 385s libmunge2 libopenjp2-7 libopenmpi3t64 libpciaccess0 libpmix2t64 385s libpsm-infinipath1 libpsm2-2 libqhull-r8.0 libraqm0 librdmacm1t64 libsz2 385s libtcl8.6 libtk8.6 libucx0 libwebpdemux2 libwebpmux3 libxft2 libxnvctrl0 385s libxrender1 libxslt1.1 libxss1 mpi-default-bin ocl-icd-libopencl1 385s openmpi-bin openmpi-common python-matplotlib-data python3-all 385s python3-appdirs python3-bmtk python3-bmtk-doc python3-bmtk-examples 385s python3-brotli python3-contourpy python3-cycler python3-dateutil 385s python3-decorator python3-fonttools python3-fs python3-h5py 385s python3-h5py-serial python3-imageio python3-iniconfig python3-kiwisolver 385s python3-lazy-loader python3-lxml python3-lz4 python3-matplotlib 385s python3-mpi4py python3-mpmath python3-networkx python3-numpy python3-pandas 385s python3-pandas-lib python3-pil python3-pil.imagetk python3-pytest 385s python3-scipy python3-skimage python3-skimage-lib python3-sympy 385s python3-tifffile python3-tk python3-ufolib2 python3-unicodedata2 385s tk8.6-blt2.5 unicode-data x11-common 385s 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. 385s Need to get 254 MB/254 MB of archives. 385s After this operation, 928 MB of additional disk space will be used. 385s Get:1 /tmp/autopkgtest.piEZfx/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [744 B] 385s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 385s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 385s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 385s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 385s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 385s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 385s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 385s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 385s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-bebas-neue all 3.0-2 [94.6 kB] 385s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.1-1 [171 kB] 385s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 385s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 385s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-12 [26.2 MB] 386s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 386s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [20.7 kB] 386s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 386s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 386s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamdhip64-5 amd64 5.7.1-4 [9526 kB] 386s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB] 386s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 386s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 386s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 386s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 386s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 librdmacm1t64 amd64 52.0-2 [70.7 kB] 386s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfabric1 amd64 1.17.0-3build2 [657 kB] 386s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 386s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 386s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 386s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 386s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 386s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 386s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 386s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc15 amd64 2.10.0-1build1 [172 kB] 386s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 386s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 386s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 387s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 387s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-sphinxdoc all 7.3.7-3 [154 kB] 387s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 387s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 387s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 387s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 387s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 387s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 387s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 387s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 387s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc-plugins amd64 2.10.0-1build1 [15.7 kB] 387s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpmix2t64 amd64 5.0.1-4.1build1 [697 kB] 387s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 libucx0 amd64 1.16.0+ds-5ubuntu1 [1140 kB] 387s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenmpi3t64 amd64 4.1.6-7ubuntu2 [2563 kB] 387s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 387s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 387s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 387s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 387s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 387s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-common all 4.1.6-7ubuntu2 [170 kB] 387s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-bin amd64 4.1.6-7ubuntu2 [114 kB] 387s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 387s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 387s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 387s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 387s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB] 387s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 387s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 387s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 387s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB] 387s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 387s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B] 387s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 387s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 387s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 387s Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 387s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 387s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 387s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 387s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 387s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 387s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 387s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 387s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 387s Get:82 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 387s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 387s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 387s Get:85 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB] 387s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB] 387s Get:87 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 387s Get:88 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 388s Get:89 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skimage-lib amd64 0.23.2-1ubuntu1 [2271 kB] 388s Get:90 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-imageio all 2.34.2-1 [233 kB] 388s Get:91 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lazy-loader all 0.3-1 [9530 B] 388s Get:92 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tifffile all 20240618-1 [176 kB] 388s Get:93 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skimage all 0.23.2-1ubuntu1 [21.5 MB] 388s Get:94 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk amd64 1.1.0+ds-1 [572 kB] 388s Get:95 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 388s Get:96 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-requirejs all 2.3.6+ds+~2.1.37-1 [201 kB] 388s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk-doc all 1.1.0+ds-1 [52.8 MB] 389s Get:98 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk-examples all 1.1.0+ds-1 [32.6 MB] 390s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 390s Get:100 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 390s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 mpi-default-bin amd64 1.15build1 [2376 B] 390s Get:102 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpi4py amd64 3.1.6-1 [466 kB] 390s Fetched 254 MB in 4s (56.4 MB/s) 390s Selecting previously unselected package libtcl8.6:amd64. 390s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74782 files and directories currently installed.) 390s Preparing to unpack .../000-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 390s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 390s Selecting previously unselected package libxrender1:amd64. 390s Preparing to unpack .../001-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 390s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 390s Selecting previously unselected package libxft2:amd64. 390s Preparing to unpack .../002-libxft2_2.3.6-1build1_amd64.deb ... 390s Unpacking libxft2:amd64 (2.3.6-1build1) ... 390s Selecting previously unselected package x11-common. 390s Preparing to unpack .../003-x11-common_1%3a7.7+23ubuntu3_all.deb ... 390s Unpacking x11-common (1:7.7+23ubuntu3) ... 390s Selecting previously unselected package libxss1:amd64. 390s Preparing to unpack .../004-libxss1_1%3a1.2.3-1build3_amd64.deb ... 390s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 390s Selecting previously unselected package libtk8.6:amd64. 390s Preparing to unpack .../005-libtk8.6_8.6.14-1build1_amd64.deb ... 390s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 390s Selecting previously unselected package tk8.6-blt2.5. 390s Preparing to unpack .../006-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 390s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 390s Selecting previously unselected package blt. 390s Preparing to unpack .../007-blt_2.5.3+dfsg-7build1_amd64.deb ... 390s Unpacking blt (2.5.3+dfsg-7build1) ... 390s Selecting previously unselected package fonts-bebas-neue. 390s Preparing to unpack .../008-fonts-bebas-neue_3.0-2_all.deb ... 390s Unpacking fonts-bebas-neue (3.0-2) ... 390s Selecting previously unselected package fonts-lyx. 390s Preparing to unpack .../009-fonts-lyx_2.4.1-1_all.deb ... 390s Unpacking fonts-lyx (2.4.1-1) ... 390s Selecting previously unselected package fonts-mathjax. 390s Preparing to unpack .../010-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 390s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 391s Selecting previously unselected package libaec0:amd64. 391s Preparing to unpack .../011-libaec0_1.1.3-1_amd64.deb ... 391s Unpacking libaec0:amd64 (1.1.3-1) ... 391s Selecting previously unselected package libllvm17t64:amd64. 391s Preparing to unpack .../012-libllvm17t64_1%3a17.0.6-12_amd64.deb ... 391s Unpacking libllvm17t64:amd64 (1:17.0.6-12) ... 391s Selecting previously unselected package libamd-comgr2:amd64. 391s Preparing to unpack .../013-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 391s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 391s Selecting previously unselected package libdrm-amdgpu1:amd64. 391s Preparing to unpack .../014-libdrm-amdgpu1_2.4.121-2_amd64.deb ... 391s Unpacking libdrm-amdgpu1:amd64 (2.4.121-2) ... 391s Selecting previously unselected package libhsakmt1:amd64. 391s Preparing to unpack .../015-libhsakmt1_5.7.0-1build1_amd64.deb ... 391s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 391s Selecting previously unselected package libhsa-runtime64-1. 392s Preparing to unpack .../016-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 392s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 392s Selecting previously unselected package libamdhip64-5. 392s Preparing to unpack .../017-libamdhip64-5_5.7.1-4_amd64.deb ... 392s Unpacking libamdhip64-5 (5.7.1-4) ... 392s Selecting previously unselected package libatomic1:amd64. 392s Preparing to unpack .../018-libatomic1_14.1.0-1ubuntu1_amd64.deb ... 392s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ... 392s Selecting previously unselected package libblas3:amd64. 392s Preparing to unpack .../019-libblas3_3.12.0-3build1_amd64.deb ... 392s Unpacking libblas3:amd64 (3.12.0-3build1) ... 392s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 392s Preparing to unpack .../020-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 392s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 392s Selecting previously unselected package libpsm-infinipath1. 392s Preparing to unpack .../021-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 392s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 392s Selecting previously unselected package libpsm2-2. 392s Preparing to unpack .../022-libpsm2-2_11.2.185-2.1_amd64.deb ... 392s Unpacking libpsm2-2 (11.2.185-2.1) ... 392s Selecting previously unselected package librdmacm1t64:amd64. 392s Preparing to unpack .../023-librdmacm1t64_52.0-2_amd64.deb ... 392s Unpacking librdmacm1t64:amd64 (52.0-2) ... 392s Selecting previously unselected package libfabric1:amd64. 392s Preparing to unpack .../024-libfabric1_1.17.0-3build2_amd64.deb ... 392s Unpacking libfabric1:amd64 (1.17.0-3build2) ... 392s Selecting previously unselected package libgfortran5:amd64. 392s Preparing to unpack .../025-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 392s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 392s Selecting previously unselected package libgomp1:amd64. 392s Preparing to unpack .../026-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 392s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 392s Selecting previously unselected package libgraphite2-3:amd64. 392s Preparing to unpack .../027-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 392s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 392s Selecting previously unselected package libharfbuzz0b:amd64. 392s Preparing to unpack .../028-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 392s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 392s Selecting previously unselected package libsz2:amd64. 392s Preparing to unpack .../029-libsz2_1.1.3-1_amd64.deb ... 392s Unpacking libsz2:amd64 (1.1.3-1) ... 392s Selecting previously unselected package libhdf5-103-1t64:amd64. 392s Preparing to unpack .../030-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 392s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 392s Selecting previously unselected package libhdf5-hl-100t64:amd64. 392s Preparing to unpack .../031-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 392s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 392s Selecting previously unselected package libhwloc15:amd64. 392s Preparing to unpack .../032-libhwloc15_2.10.0-1build1_amd64.deb ... 392s Unpacking libhwloc15:amd64 (2.10.0-1build1) ... 392s Selecting previously unselected package libimagequant0:amd64. 392s Preparing to unpack .../033-libimagequant0_2.18.0-1build1_amd64.deb ... 392s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 392s Selecting previously unselected package libjs-jquery. 392s Preparing to unpack .../034-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 392s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 392s Selecting previously unselected package libjs-jquery-ui. 392s Preparing to unpack .../035-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 392s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 392s Selecting previously unselected package libjs-underscore. 392s Preparing to unpack .../036-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 392s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 392s Selecting previously unselected package libjs-sphinxdoc. 392s Preparing to unpack .../037-libjs-sphinxdoc_7.3.7-3_all.deb ... 392s Unpacking libjs-sphinxdoc (7.3.7-3) ... 392s Selecting previously unselected package liblapack3:amd64. 392s Preparing to unpack .../038-liblapack3_3.12.0-3build1_amd64.deb ... 392s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 392s Selecting previously unselected package liblbfgsb0:amd64. 392s Preparing to unpack .../039-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 392s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 392s Selecting previously unselected package liblcms2-2:amd64. 392s Preparing to unpack .../040-liblcms2-2_2.14-2build1_amd64.deb ... 392s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 392s Selecting previously unselected package liblzf1:amd64. 392s Preparing to unpack .../041-liblzf1_3.6-4_amd64.deb ... 392s Unpacking liblzf1:amd64 (3.6-4) ... 392s Selecting previously unselected package libmunge2:amd64. 393s Preparing to unpack .../042-libmunge2_0.5.15-4build1_amd64.deb ... 393s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 393s Selecting previously unselected package libpciaccess0:amd64. 393s Preparing to unpack .../043-libpciaccess0_0.17-3build1_amd64.deb ... 393s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 393s Selecting previously unselected package libxnvctrl0:amd64. 393s Preparing to unpack .../044-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 393s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 393s Selecting previously unselected package ocl-icd-libopencl1:amd64. 393s Preparing to unpack .../045-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 393s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 393s Selecting previously unselected package libhwloc-plugins:amd64. 393s Preparing to unpack .../046-libhwloc-plugins_2.10.0-1build1_amd64.deb ... 393s Unpacking libhwloc-plugins:amd64 (2.10.0-1build1) ... 393s Selecting previously unselected package libpmix2t64:amd64. 393s Preparing to unpack .../047-libpmix2t64_5.0.1-4.1build1_amd64.deb ... 393s Unpacking libpmix2t64:amd64 (5.0.1-4.1build1) ... 393s Selecting previously unselected package libucx0:amd64. 393s Preparing to unpack .../048-libucx0_1.16.0+ds-5ubuntu1_amd64.deb ... 393s Unpacking libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 393s Selecting previously unselected package libopenmpi3t64:amd64. 393s Preparing to unpack .../049-libopenmpi3t64_4.1.6-7ubuntu2_amd64.deb ... 393s Unpacking libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 393s Selecting previously unselected package libqhull-r8.0:amd64. 393s Preparing to unpack .../050-libqhull-r8.0_2020.2-6build1_amd64.deb ... 393s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 393s Selecting previously unselected package libraqm0:amd64. 393s Preparing to unpack .../051-libraqm0_0.10.1-1build1_amd64.deb ... 393s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 393s Selecting previously unselected package libwebpdemux2:amd64. 393s Preparing to unpack .../052-libwebpdemux2_1.4.0-0.1_amd64.deb ... 393s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 393s Selecting previously unselected package libwebpmux3:amd64. 393s Preparing to unpack .../053-libwebpmux3_1.4.0-0.1_amd64.deb ... 393s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 393s Selecting previously unselected package libxslt1.1:amd64. 393s Preparing to unpack .../054-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 393s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 393s Selecting previously unselected package openmpi-common. 393s Preparing to unpack .../055-openmpi-common_4.1.6-7ubuntu2_all.deb ... 393s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 393s Selecting previously unselected package openmpi-bin. 393s Preparing to unpack .../056-openmpi-bin_4.1.6-7ubuntu2_amd64.deb ... 393s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 393s Selecting previously unselected package python-matplotlib-data. 393s Preparing to unpack .../057-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 393s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 393s Selecting previously unselected package python3-all. 393s Preparing to unpack .../058-python3-all_3.12.3-0ubuntu1_amd64.deb ... 393s Unpacking python3-all (3.12.3-0ubuntu1) ... 393s Selecting previously unselected package python3-appdirs. 393s Preparing to unpack .../059-python3-appdirs_1.4.4-4_all.deb ... 393s Unpacking python3-appdirs (1.4.4-4) ... 393s Selecting previously unselected package python3-numpy. 393s Preparing to unpack .../060-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 393s Unpacking python3-numpy (1:1.26.4+ds-10) ... 393s Selecting previously unselected package python3-h5py-serial. 393s Preparing to unpack .../061-python3-h5py-serial_3.10.0-1ubuntu3_amd64.deb ... 393s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 393s Selecting previously unselected package python3-h5py. 393s Preparing to unpack .../062-python3-h5py_3.10.0-1ubuntu3_all.deb ... 393s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 394s Selecting previously unselected package python3-dateutil. 394s Preparing to unpack .../063-python3-dateutil_2.9.0-2_all.deb ... 394s Unpacking python3-dateutil (2.9.0-2) ... 394s Selecting previously unselected package libopenjp2-7:amd64. 394s Preparing to unpack .../064-libopenjp2-7_2.5.0-2build3_amd64.deb ... 394s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 394s Selecting previously unselected package python3-pil:amd64. 394s Preparing to unpack .../065-python3-pil_10.3.0-2_amd64.deb ... 394s Unpacking python3-pil:amd64 (10.3.0-2) ... 394s Selecting previously unselected package python3-tk:amd64. 394s Preparing to unpack .../066-python3-tk_3.12.3-0ubuntu1_amd64.deb ... 394s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ... 394s Selecting previously unselected package python3-pil.imagetk:amd64. 394s Preparing to unpack .../067-python3-pil.imagetk_10.3.0-2_amd64.deb ... 394s Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ... 394s Selecting previously unselected package python3-contourpy. 394s Preparing to unpack .../068-python3-contourpy_1.0.7-3_amd64.deb ... 394s Unpacking python3-contourpy (1.0.7-3) ... 394s Selecting previously unselected package python3-cycler. 394s Preparing to unpack .../069-python3-cycler_0.12.1-1_all.deb ... 394s Unpacking python3-cycler (0.12.1-1) ... 394s Selecting previously unselected package python3-brotli. 394s Preparing to unpack .../070-python3-brotli_1.1.0-2build2_amd64.deb ... 394s Unpacking python3-brotli (1.1.0-2build2) ... 394s Selecting previously unselected package python3-decorator. 394s Preparing to unpack .../071-python3-decorator_5.1.1-5_all.deb ... 394s Unpacking python3-decorator (5.1.1-5) ... 394s Selecting previously unselected package python3-scipy. 394s Preparing to unpack .../072-python3-scipy_1.12.0-2_amd64.deb ... 394s Unpacking python3-scipy (1.12.0-2) ... 394s Selecting previously unselected package python3-ufolib2. 394s Preparing to unpack .../073-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 394s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 394s Selecting previously unselected package python3-mpmath. 394s Preparing to unpack .../074-python3-mpmath_1.3.0-1_all.deb ... 394s Unpacking python3-mpmath (1.3.0-1) ... 394s Selecting previously unselected package python3-sympy. 394s Preparing to unpack .../075-python3-sympy_1.12-8_all.deb ... 394s Unpacking python3-sympy (1.12-8) ... 395s Selecting previously unselected package python3-fs. 395s Preparing to unpack .../076-python3-fs_2.4.16-4_all.deb ... 395s Unpacking python3-fs (2.4.16-4) ... 395s Selecting previously unselected package python3-lxml:amd64. 395s Preparing to unpack .../077-python3-lxml_5.2.1-1_amd64.deb ... 395s Unpacking python3-lxml:amd64 (5.2.1-1) ... 395s Selecting previously unselected package python3-lz4. 395s Preparing to unpack .../078-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 395s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 395s Selecting previously unselected package python3-unicodedata2. 395s Preparing to unpack .../079-python3-unicodedata2_15.1.0+ds-1build1_amd64.deb ... 395s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 395s Selecting previously unselected package unicode-data. 395s Preparing to unpack .../080-unicode-data_15.1.0-1_all.deb ... 395s Unpacking unicode-data (15.1.0-1) ... 395s Selecting previously unselected package python3-fonttools. 395s Preparing to unpack .../081-python3-fonttools_4.46.0-1build2_amd64.deb ... 395s Unpacking python3-fonttools (4.46.0-1build2) ... 395s Selecting previously unselected package python3-kiwisolver. 395s Preparing to unpack .../082-python3-kiwisolver_1.4.5-1_amd64.deb ... 395s Unpacking python3-kiwisolver (1.4.5-1) ... 395s Selecting previously unselected package python3-matplotlib. 395s Preparing to unpack .../083-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ... 395s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 395s Selecting previously unselected package python3-pandas-lib:amd64. 395s Preparing to unpack .../084-python3-pandas-lib_2.1.4+dfsg-8_amd64.deb ... 395s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 396s Selecting previously unselected package python3-pandas. 396s Preparing to unpack .../085-python3-pandas_2.1.4+dfsg-8_all.deb ... 396s Unpacking python3-pandas (2.1.4+dfsg-8) ... 396s Selecting previously unselected package python3-networkx. 396s Preparing to unpack .../086-python3-networkx_3.2.1-4ubuntu1_all.deb ... 396s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 396s Selecting previously unselected package python3-skimage-lib:amd64. 396s Preparing to unpack .../087-python3-skimage-lib_0.23.2-1ubuntu1_amd64.deb ... 396s Unpacking python3-skimage-lib:amd64 (0.23.2-1ubuntu1) ... 397s Selecting previously unselected package python3-imageio. 397s Preparing to unpack .../088-python3-imageio_2.34.2-1_all.deb ... 397s Unpacking python3-imageio (2.34.2-1) ... 397s Selecting previously unselected package python3-lazy-loader. 397s Preparing to unpack .../089-python3-lazy-loader_0.3-1_all.deb ... 397s Unpacking python3-lazy-loader (0.3-1) ... 397s Selecting previously unselected package python3-tifffile. 397s Preparing to unpack .../090-python3-tifffile_20240618-1_all.deb ... 397s Unpacking python3-tifffile (20240618-1) ... 397s Selecting previously unselected package python3-skimage. 397s Preparing to unpack .../091-python3-skimage_0.23.2-1ubuntu1_all.deb ... 397s Unpacking python3-skimage (0.23.2-1ubuntu1) ... 397s Selecting previously unselected package python3-bmtk. 397s Preparing to unpack .../092-python3-bmtk_1.1.0+ds-1_amd64.deb ... 397s Unpacking python3-bmtk (1.1.0+ds-1) ... 397s Selecting previously unselected package libjs-mathjax. 397s Preparing to unpack .../093-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 397s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 398s Selecting previously unselected package libjs-requirejs. 398s Preparing to unpack .../094-libjs-requirejs_2.3.6+ds+~2.1.37-1_all.deb ... 398s Unpacking libjs-requirejs (2.3.6+ds+~2.1.37-1) ... 398s Selecting previously unselected package python3-bmtk-doc. 398s Preparing to unpack .../095-python3-bmtk-doc_1.1.0+ds-1_all.deb ... 398s Unpacking python3-bmtk-doc (1.1.0+ds-1) ... 398s Selecting previously unselected package python3-bmtk-examples. 398s Preparing to unpack .../096-python3-bmtk-examples_1.1.0+ds-1_all.deb ... 398s Unpacking python3-bmtk-examples (1.1.0+ds-1) ... 399s Selecting previously unselected package python3-iniconfig. 399s Preparing to unpack .../097-python3-iniconfig_1.1.1-2_all.deb ... 399s Unpacking python3-iniconfig (1.1.1-2) ... 399s Selecting previously unselected package python3-pytest. 399s Preparing to unpack .../098-python3-pytest_7.4.4-1_all.deb ... 399s Unpacking python3-pytest (7.4.4-1) ... 399s Selecting previously unselected package mpi-default-bin. 399s Preparing to unpack .../099-mpi-default-bin_1.15build1_amd64.deb ... 399s Unpacking mpi-default-bin (1.15build1) ... 399s Selecting previously unselected package python3-mpi4py. 399s Preparing to unpack .../100-python3-mpi4py_3.1.6-1_amd64.deb ... 399s Unpacking python3-mpi4py (3.1.6-1) ... 399s Selecting previously unselected package autopkgtest-satdep. 399s Preparing to unpack .../101-1-autopkgtest-satdep.deb ... 399s Unpacking autopkgtest-satdep (0) ... 399s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 399s Setting up liblcms2-2:amd64 (2.14-2build1) ... 399s Setting up python3-iniconfig (1.1.1-2) ... 399s Setting up libpciaccess0:amd64 (0.17-3build1) ... 399s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 399s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 399s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 399s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 399s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 399s Setting up python3-pytest (7.4.4-1) ... 400s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 400s Setting up fonts-lyx (2.4.1-1) ... 400s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 400s Setting up x11-common (1:7.7+23ubuntu3) ... 400s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 400s Setting up python3-all (3.12.3-0ubuntu1) ... 400s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 400s Setting up libjs-requirejs (2.3.6+ds+~2.1.37-1) ... 400s Setting up python3-networkx (3.2.1-4ubuntu1) ... 401s Setting up libaec0:amd64 (1.1.3-1) ... 401s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 401s Setting up unicode-data (15.1.0-1) ... 401s Setting up python3-decorator (5.1.1-5) ... 401s Setting up libblas3:amd64 (3.12.0-3build1) ... 401s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 401s Setting up libmunge2:amd64 (0.5.15-4build1) ... 401s Setting up libllvm17t64:amd64 (1:17.0.6-12) ... 401s Setting up python3-brotli (1.1.0-2build2) ... 402s Setting up liblzf1:amd64 (3.6-4) ... 402s Setting up python3-cycler (0.12.1-1) ... 402s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 402s Setting up python3-kiwisolver (1.4.5-1) ... 402s Setting up libhwloc15:amd64 (2.10.0-1build1) ... 402s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ... 402s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 402s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 402s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 402s Setting up fonts-bebas-neue (3.0-2) ... 402s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 402s Setting up libpsm2-2 (11.2.185-2.1) ... 402s Setting up openmpi-common (4.1.6-7ubuntu2) ... 402s Setting up librdmacm1t64:amd64 (52.0-2) ... 402s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 402s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... 402s Setting up python3-dateutil (2.9.0-2) ... 402s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 402s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 402s Setting up python3-lazy-loader (0.3-1) ... 402s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 402s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 402s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 402s Setting up python3-mpmath (1.3.0-1) ... 403s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 403s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 403s Setting up python3-appdirs (1.4.4-4) ... 403s Setting up libsz2:amd64 (1.1.3-1) ... 403s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 403s Setting up python3-bmtk-examples (1.1.0+ds-1) ... 403s Setting up libdrm-amdgpu1:amd64 (2.4.121-2) ... 403s Setting up libfabric1:amd64 (1.17.0-3build2) ... 403s Setting up python3-sympy (1.12-8) ... 408s Setting up liblapack3:amd64 (3.12.0-3build1) ... 408s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 408s Setting up libxft2:amd64 (2.3.6-1build1) ... 408s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 408s Setting up libhwloc-plugins:amd64 (2.10.0-1build1) ... 408s Setting up python3-fs (2.4.16-4) ... 409s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 409s Setting up libraqm0:amd64 (0.10.1-1build1) ... 409s Setting up libpmix2t64:amd64 (5.0.1-4.1build1) ... 409s Setting up python3-numpy (1:1.26.4+ds-10) ... 410s Setting up libjs-sphinxdoc (7.3.7-3) ... 410s Setting up python3-lxml:amd64 (5.2.1-1) ... 411s Setting up python3-contourpy (1.0.7-3) ... 411s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 411s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 411s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 411s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 411s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 411s Setting up python3-scipy (1.12.0-2) ... 414s Setting up python3-skimage-lib:amd64 (0.23.2-1ubuntu1) ... 414s Setting up python3-bmtk-doc (1.1.0+ds-1) ... 414s Setting up blt (2.5.3+dfsg-7build1) ... 414s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 414s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 414s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ... 414s Setting up python3-tifffile (20240618-1) ... 415s Setting up python3-pil:amd64 (10.3.0-2) ... 415s Setting up python3-pandas (2.1.4+dfsg-8) ... 419s Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... 419s Setting up python3-h5py (3.10.0-1ubuntu3) ... 420s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 420s Setting up python3-imageio (2.34.2-1) ... 420s Setting up libamdhip64-5 (5.7.1-4) ... 420s Setting up libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 420s Setting up libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 420s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 420s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 420s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 420s Setting up mpi-default-bin (1.15build1) ... 420s Setting up python3-mpi4py (3.1.6-1) ... 420s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 420s Setting up python3-fonttools (4.46.0-1build2) ... 421s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 422s Setting up python3-skimage (0.23.2-1ubuntu1) ... 423s Setting up python3-bmtk (1.1.0+ds-1) ... 423s /usr/lib/python3/dist-packages/bmtk/simulator/bionet/modules/comsol.py:177: SyntaxWarning: invalid escape sequence '\s' 423s headers = pd.read_csv(comsol_file, sep="\s{3,}", header=None, skiprows=8, nrows=1, engine='python') 423s /usr/lib/python3/dist-packages/bmtk/simulator/bionet/modules/comsol.py:179: SyntaxWarning: invalid escape sequence '\s' 423s data = pd.read_csv(comsol_file, sep="\s+", header=None, skiprows=9) 423s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/util_fns.py:51: SyntaxWarning: invalid escape sequence '\D' 423s gr_fnames_ord = sorted(gr_fnames, key=lambda x: (int(re.sub('\D', '', x)), x)) 424s /usr/lib/python3/dist-packages/bmtk/utils/io/cell_vars.py:19: SyntaxWarning: invalid escape sequence '\*' 424s """A small struct to keep track of different \*/data (and buffer) tables""" 424s /usr/lib/python3/dist-packages/bmtk/utils/sonata/config/sonata_config.py:400: SyntaxWarning: invalid escape sequence '\$' 424s variables = [m for m in re.finditer('\$\{?[\w]+\}?', json_str)] 424s Setting up autopkgtest-satdep (0) ... 424s Processing triggers for libc-bin (2.39-0ubuntu9) ... 424s Processing triggers for man-db (2.12.1-2) ... 430s (Reading database ... 94256 files and directories currently installed.) 430s Removing autopkgtest-satdep (0) ... 431s autopkgtest [17:54:56]: test run-unit-test: [----------------------- 432s ============================= test session starts ============================== 432s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 432s cachedir: .pytest_cache 432s rootdir: /tmp/autopkgtest.piEZfx/autopkgtest_tmp 435s collecting ... collected 360 items / 5 skipped 435s 435s tests/builder/test_connection_map.py::test_connection_map_fnc PASSED [ 0%] 435s tests/builder/test_connection_map.py::test_connection_map_num PASSED [ 0%] 435s tests/builder/test_connection_map.py::test_connection_map_list PASSED [ 0%] 435s tests/builder/test_connection_map.py::test_connection_map_dict PASSED [ 1%] 435s tests/builder/test_connection_map.py::test_cm_params1 PASSED [ 1%] 435s tests/builder/test_connection_map.py::test_cm_params2 PASSED [ 1%] 435s tests/builder/test_connection_map.py::test_cm_params3 PASSED [ 1%] 435s tests/builder/test_connector.py::test_fnc_params PASSED [ 2%] 435s tests/builder/test_connector.py::test_fnc_noparams PASSED [ 2%] 435s tests/builder/test_connector.py::test_literal PASSED [ 2%] 435s tests/builder/test_connector.py::test_list PASSED [ 3%] 435s tests/builder/test_connector.py::test_dict PASSED [ 3%] 435s tests/builder/test_densenetwork.py::test_save_nsyn_table[DenseNetwork] PASSED [ 3%] 436s tests/builder/test_densenetwork.py::test_save_weights[DenseNetwork] PASSED [ 3%] 436s tests/builder/test_densenetwork.py::test_save_multinetwork[DenseNetwork] PASSED [ 4%] 436s tests/builder/test_edge_iterator.py::test_itr_basic PASSED [ 4%] 436s tests/builder/test_edge_iterator.py::test_itr_advanced_search PASSED [ 4%] 436s tests/builder/test_edge_iterator.py::test_mulitnet_iterator PASSED [ 5%] 437s tests/builder/test_edges_sorter.py::test_sort[quicksort_edges-sort_params0] PASSED [ 5%] 437s tests/builder/test_edges_sorter.py::test_sort[external_merge_sort-sort_params1] PASSED [ 5%] 437s tests/builder/test_edges_sorter.py::test_sort[external_merge_sort-sort_params2] PASSED [ 5%] 437s tests/builder/test_id_generator.py::test_generator PASSED [ 6%] 437s tests/builder/test_id_generator.py::test_get_ids PASSED [ 6%] 437s tests/builder/test_id_generator.py::test_call PASSED [ 6%] 437s tests/builder/test_id_generator.py::test_generator_initval PASSED [ 6%] 437s tests/builder/test_id_generator.py::test_contains PASSED [ 7%] 437s tests/builder/test_id_generator.py::test_remove PASSED [ 7%] 437s tests/builder/test_index_builders.py::test_create_index[create_index_in_memory-indexer_args0] PASSED [ 7%] 437s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] PASSED [ 8%] 437s tests/builder/test_iterator.py::test_one2one_fnc PASSED [ 8%] 437s tests/builder/test_iterator.py::test_one2all_fnc PASSED [ 8%] 437s tests/builder/test_iterator.py::test_all2one_fnc PASSED [ 8%] 437s tests/builder/test_iterator.py::test_literal PASSED [ 9%] 437s tests/builder/test_iterator.py::test_dict PASSED [ 9%] 437s tests/builder/test_iterator.py::test_one2one_list PASSED [ 9%] 437s tests/builder/test_iterator.py::test_one2all_list PASSED [ 10%] 437s tests/builder/test_iterator.py::test_all2one_list PASSED [ 10%] 437s tests/builder/test_network.py::test_basic PASSED [ 10%] 437s tests/builder/test_network.py::test_no_name PASSED [ 10%] 437s tests/builder/test_network.py::test_add_nodes PASSED [ 11%] 437s tests/builder/test_network.py::test_add_nodes_tuples PASSED [ 11%] 437s tests/builder/test_network.py::test_add_node_ids PASSED [ 11%] 437s tests/builder/test_network.py::test_add_node_ids_mixed PASSED [ 11%] 437s tests/builder/test_network.py::test_add_nodes_mismatch_params PASSED [ 12%] 437s tests/builder/test_network.py::test_duplicate_node_ids PASSED [ 12%] 437s tests/builder/test_network.py::test_duplicate_node_type_ids PASSED [ 12%] 437s tests/builder/test_network.py::test_add_edges PASSED [ 13%] 437s tests/builder/test_network.py::test_add_edges_custom_params PASSED [ 13%] 437s tests/builder/test_network.py::test_cross_pop_edges PASSED [ 13%] 437s tests/builder/test_network_mpi.py::test_create_network_dir_mpi SKIPPED [ 13%] 437s tests/builder/test_network_mpi.py::test_check_properties_mpi SKIPPED [ 14%] 437s tests/builder/test_network_mpi.py::test_check_nonuniform_args SKIPPED [ 14%] 437s tests/builder/test_network_mpi.py::test_nonuniform_str_mpi SKIPPED (...) [ 14%] 437s tests/builder/test_network_mpi.py::test_nonuniform_int_mpi SKIPPED (...) [ 15%] 437s tests/builder/test_network_mpi.py::test_nonuniform_float_mpi SKIPPED [ 15%] 437s tests/builder/test_network_mpi.py::test_nonuniform_list_mpi SKIPPED [ 15%] 437s tests/builder/test_network_mpi.py::test_nonuniform_array_mpi SKIPPED [ 15%] 437s tests/builder/test_node_pool.py::test_single_node PASSED [ 16%] 437s tests/builder/test_node_pool.py::test_node_set PASSED [ 16%] 437s tests/builder/test_node_pool.py::test_node_sets PASSED [ 16%] 437s tests/builder/test_node_pool.py::test_multi_search PASSED [ 16%] 437s tests/builder/test_node_pool.py::test_failed_search PASSED [ 17%] 437s tests/builder/test_node_set.py::test_node_set PASSED [ 17%] 437s tests/builder/test_node_set.py::test_set_hash PASSED [ 17%] 437s tests/builder/test_node_set.py::test_node PASSED [ 18%] 437s tests/builder/test_save_network.py::test_basic PASSED [ 18%] 437s tests/builder/test_save_network.py::test_multi_node_models PASSED [ 18%] 437s tests/builder/test_save_network.py::test_edge_models PASSED [ 18%] 437s tests/builder/test_save_network.py::test_connection_map PASSED [ 19%] 437s tests/builder/test_save_network.py::test_cross_population_edges PASSED [ 19%] 437s tests/builder/test_save_network.py::test_compression PASSED [ 19%] 437s tests/builder/auxi/test_edge_connectors.py::test_distance_connector PASSED [ 20%] 437s tests/builder/auxi/test_edge_connectors.py::test_connect_random PASSED [ 20%] 437s tests/builder/auxi/test_node_params.py::test_positions_columinar PASSED [ 20%] 437s tests/builder/auxi/test_node_params.py::test_positions_cuboid PASSED [ 20%] 437s tests/builder/auxi/test_node_params.py::test_positions_list PASSED [ 21%] 437s tests/builder/auxi/test_node_params.py::test_positions_rect_prism PASSED [ 21%] 437s tests/builder/auxi/test_node_params.py::test_positions_ellipsoid PASSED [ 21%] 437s tests/builder/auxi/test_node_params.py::test_positions_density_matrix PASSED [ 21%] 437s tests/builder/auxi/test_node_params.py::test_positions_nrrd SKIPPED [ 22%] 437s tests/simulator/bionet/test_biograph.py::test_add_nodes SKIPPED (unc...) [ 22%] 437s tests/simulator/bionet/test_biograph.py::test_add_edges SKIPPED (unc...) [ 22%] 437s tests/simulator/bionet/test_gids.py::test_gid_pool SKIPPED (NEURON i...) [ 23%] 437s tests/simulator/bionet/test_nrn.py::test_weight SKIPPED (NEURON is n...) [ 23%] 437s tests/simulator/bionet/test_nrn.py::test_weight_decorator SKIPPED (N...) [ 23%] 437s tests/simulator/bionet/test_nrn.py::test_synapse_model SKIPPED (NEUR...) [ 23%] 437s tests/simulator/bionet/test_nrn.py::test_synapse_model_decorator SKIPPED [ 24%] 437s tests/simulator/bionet/test_nrn.py::test_cell_model SKIPPED (uncondi...) [ 24%] 437s tests/simulator/bionet/test_nrn.py::test_cell_model_decorator SKIPPED [ 24%] 437s tests/simulator/bionet/test_nrn.py::test_load_py_modules SKIPPED (un...) [ 25%] 437s tests/simulator/core/test_ecephys_module.py::test_basic SKIPPED (pyn...) [ 25%] 437s tests/simulator/core/test_ecephys_module.py::test_interval_defaults SKIPPED [ 25%] 437s tests/simulator/core/test_ecephys_module.py::test_unit_intervals_lu SKIPPED [ 25%] 437s tests/simulator/core/test_ecephys_module.py::test_load_map_strategy SKIPPED [ 26%] 437s tests/simulator/core/test_ecephys_module.py::test_filter_units SKIPPED [ 26%] 437s tests/simulator/core/test_ecephys_module.py::test_unit_map_strategy SKIPPED [ 26%] 437s tests/simulator/core/test_ecephys_module.py::test_sampling_strategy SKIPPED [ 26%] 437s tests/simulator/core/test_iclamp.py::test_AmpsReader[mod_args0] PASSED [ 27%] 437s tests/simulator/core/test_iclamp.py::test_AmpsReader[mod_args1] PASSED [ 27%] 437s tests/simulator/core/test_iclamp.py::test_AmpsReader_invalid[mod_args0] PASSED [ 27%] 437s tests/simulator/core/test_iclamp.py::test_AmpsReader_invalid[mod_args1] PASSED [ 28%] 437s tests/simulator/core/test_iclamp.py::test_AmpsReader_invalid[mod_args2] PASSED [ 28%] 437s tests/simulator/core/test_io_tools.py::test_setup PASSED [ 28%] 437s tests/simulator/core/test_io_tools.py::test_logging PASSED [ 28%] 437s tests/simulator/core/test_pyfunction_cache.py::test_add_cell_model PASSED [ 29%] 437s tests/simulator/core/test_pyfunction_cache.py::test_add_cell_model_decorator PASSED [ 29%] 437s tests/simulator/core/test_pyfunction_cache.py::test_add_model_nomodeltype PASSED [ 29%] 437s tests/simulator/core/test_pyfunction_cache.py::test_synpatic_weight PASSED [ 30%] 437s tests/simulator/core/test_pyfunction_cache.py::test_synpase_model PASSED [ 30%] 437s tests/simulator/core/test_pyfunction_cache.py::test_cell_processor PASSED [ 30%] 437s tests/simulator/core/test_simulation_config.py::test_build_env PASSED [ 30%] 437s tests/simulator/core/test_simulation_config.py::test_overwrite PASSED [ 31%] 438s tests/simulator/core/test_simulation_config_validator.py::test_validate_network PASSED [ 31%] 438s tests/simulator/core/test_simulation_config_validator.py::test_validate_components PASSED [ 31%] 438s tests/simulator/core/test_simulation_config_validator.py::test_validate_inputs PASSED [ 31%] 438s tests/simulator/filternet/test_default_setters.py::test_onunit[tON_TF8-expected_val0] PASSED [ 32%] 438s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF1-expected_val1] PASSED [ 32%] 438s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF2-expected_val2] PASSED [ 32%] 438s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF4-expected_val3] PASSED [ 33%] 438s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF8-expected_val4] PASSED [ 33%] 438s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF15-expected_val5] PASSED [ 33%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF1-expected_val0] PASSED [ 33%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF2-expected_val1] PASSED [ 34%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF4-expected_val2] PASSED [ 34%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF8-expected_val3] PASSED [ 34%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF15-expected_val4] PASSED [ 35%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF1-expected_val5] PASSED [ 35%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF2-expected_val6] PASSED [ 35%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF4-expected_val7] PASSED [ 35%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF8-expected_val8] PASSED [ 36%] 438s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF15-expected_val9] PASSED [ 36%] 438s tests/simulator/filternet/test_default_setters.py::test_sONsOFF[sONsOFF_001-expected_val0] PASSED [ 36%] 438s tests/simulator/filternet/test_default_setters.py::test_sONtOFF[sONsOFF_001-expected_val0] PASSED [ 36%] 440s tests/simulator/filternet/test_filternet_movies.py::test_filtersimulator_add_movie_with_phase PASSED [ 37%] 440s tests/simulator/filternet/lgnmodel/test_kernels.py::test_spatialfilter_kernel PASSED [ 37%] 440s tests/simulator/filternet/lgnmodel/test_kernels.py::test_temporalfilter_kernel PASSED [ 37%] 442s tests/simulator/filternet/lgnmodel/test_kernels.py::test_spatiotemporalfilter_kernel PASSED [ 38%] 442s tests/simulator/filternet/lgnmodel/test_movie.py::test_movie PASSED [ 38%] 442s tests/simulator/filternet/lgnmodel/test_movie.py::test_add_movies PASSED [ 38%] 443s tests/simulator/filternet/lgnmodel/test_movie.py::test_grating PASSED [ 38%] 443s tests/simulator/filternet/lgnmodel/test_movie.py::test_normalize_array PASSED [ 39%] 443s tests/simulator/filternet/lgnmodel/test_movie.py::test_normalize_array_invalid PASSED [ 39%] 443s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[tOFF-expected_val0] PASSED [ 39%] 443s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[tON-expected_val1] PASSED [ 40%] 443s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sOFF-expected_val2] PASSED [ 40%] 443s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sON-expected_val3] PASSED [ 40%] 443s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4] PASSED [ 40%] 443s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5] PASSED [ 41%] 443s tests/simulator/filternet/lgnmodel/test_transferfunction.py::test_heaviside PASSED [ 41%] 443s tests/simulator/filternet/lgnmodel/test_units.py::test_onunit PASSED [ 41%] 443s tests/simulator/filternet/lgnmodel/test_units.py::test_offunit PASSED [ 41%] 443s tests/simulator/filternet/lgnmodel/test_units.py::test_lgnonoffcell PASSED [ 42%] 443s tests/simulator/filternet/lgnmodel/test_units.py::test_twosubfieldlinearcell PASSED [ 42%] 443s tests/simulator/filternet/lgnmodel/test_utils.py::test_get_tcross_from_temporal_kernel PASSED [ 42%] 443s tests/simulator/pointnet/test_multimeter_report.py::test_multimeter_dt[0.001] SKIPPED [ 43%] 443s tests/simulator/pointnet/test_multimeter_report.py::test_multimeter_dt[1.0] SKIPPED [ 43%] 443s tests/simulator/pointnet/test_multimeter_report.py::test_multimeter_dt[5.0] SKIPPED [ 43%] 443s tests/simulator/pointnet/test_multimeter_report.py::test_multimeter_dt[10.0] SKIPPED [ 43%] 443s tests/simulator/pointnet/test_pointgraph.py::test_add_nodes SKIPPED [ 44%] 443s tests/simulator/pointnet/test_pointgraph.py::test_add_edges SKIPPED [ 44%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_nodes[True] SKIPPED [ 44%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_nodes[False] SKIPPED [ 45%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_multi_nodes[True] SKIPPED [ 45%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_multi_nodes[False] SKIPPED [ 45%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_edges SKIPPED [ 45%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_edges_baddelay SKIPPED [ 46%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times0] SKIPPED [ 46%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times1] SKIPPED [ 46%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[None] SKIPPED [ 46%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times3] SKIPPED [ 47%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times4] SKIPPED [ 47%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times5] SKIPPED [ 47%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times6] SKIPPED [ 48%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains_badtimes[spike_times0] SKIPPED [ 48%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains_badtimes[spike_times1] SKIPPED [ 48%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains_badtimes[spike_times2] SKIPPED [ 48%] 443s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains_badtimes[spike_times3] SKIPPED [ 49%] 443s tests/simulator/popnet/test_popgraph.py::test_add_nodes SKIPPED (unc...) [ 49%] 443s tests/simulator/utils/test_simulation_inputs.py::test_sim_inputs PASSED [ 49%] 443s tests/simulator/utils/test_simulation_inputs.py::test_sim_inputs_disable PASSED [ 50%] 443s tests/simulator/utils/test_simulation_inputs.py::test_no_module PASSED [ 50%] 443s tests/simulator/utils/test_simulation_inputs.py::test_no_input_type PASSED [ 50%] 443s tests/simulator/utils/test_simulation_inputs.py::test_registry PASSED [ 50%] 443s tests/simulator/utils/test_simulation_reports.py::test_sim_report PASSED [ 51%] 443s tests/simulator/utils/test_simulation_reports.py::test_sim_report_disabled PASSED [ 51%] 443s tests/simulator/utils/test_simulation_reports.py::test_registry PASSED [ 51%] 443s tests/simulator/utils/test_simulation_reports.py::test_from_config PASSED [ 51%] 444s tests/utils/reports/compartment/test_compartment_reader.py::test_compartment_reader PASSED [ 52%] 444s tests/utils/reports/compartment/test_compartment_reader.py::test_compartment_reader2 PASSED [ 52%] 444s tests/utils/reports/compartment/test_compartment_writer.py::test_one_compartment_report PASSED [ 52%] 444s tests/utils/reports/compartment/test_compartment_writer.py::test_multi_compartment_report PASSED [ 53%] 444s tests/utils/reports/compartment/test_compartment_writer.py::test_multi_cell_report PASSED [ 53%] 445s tests/utils/reports/compartment/test_compartment_writer.py::test_multi_population_report PASSED [ 53%] 445s tests/utils/reports/compartment/test_compartment_writer.py::test_block_record PASSED [ 53%] 445s tests/utils/reports/compartment/test_compartment_writer.py::test_custom_columns PASSED [ 54%] 445s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[None-False-None] PASSED [ 54%] 445s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[node_ids1-False-None] PASSED [ 54%] 445s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[node_ids2-True-None] PASSED [ 55%] 445s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[None-True-None] PASSED [ 55%] 445s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[None-True-node_groups4] PASSED [ 55%] 445s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[None-False-node_groups5] PASSED [ 55%] 445s tests/utils/reports/compartment/test_plotting.py::test_plot_single_trace[1-v1] PASSED [ 56%] 445s tests/utils/reports/compartment/test_plotting.py::test_plot_single_trace[3-v1] PASSED [ 56%] 445s tests/utils/reports/compartment/test_plotting.py::test_plot_invalid_id PASSED [ 56%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv[write_csv-STMemoryBuffer] PASSED [ 56%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv[write_csv-STCSVBuffer] PASSED [ 57%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv[write_csv_itr-STMemoryBuffer] PASSED [ 57%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv[write_csv_itr-STCSVBuffer] PASSED [ 57%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_bytime[write_csv-STMemoryBuffer] PASSED [ 58%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_bytime[write_csv-STCSVBuffer] PASSED [ 58%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_bytime[write_csv_itr-STMemoryBuffer] PASSED [ 58%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_bytime[write_csv_itr-STCSVBuffer] PASSED [ 58%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_byid[write_csv-STMemoryBuffer] PASSED [ 59%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_byid[write_csv-STCSVBuffer] PASSED [ 59%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_byid[write_csv_itr-STMemoryBuffer] PASSED [ 59%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_byid[write_csv_itr-STCSVBuffer] PASSED [ 60%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader PASSED [ 60%] 445s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader_nopop PASSED [ 60%] 445s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv-STMPIBuffer] PASSED [ 60%] 445s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv-STCSVMPIBufferV2] PASSED [ 61%] 445s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv_itr-STMPIBuffer] PASSED [ 61%] 445s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv_itr-STCSVMPIBufferV2] PASSED [ 61%] 445s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_byid[write_csv-STMPIBuffer] PASSED [ 61%] 445s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_byid[write_csv-STCSVMPIBufferV2] PASSED [ 62%] 445s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_byid[write_csv_itr-STMPIBuffer] PASSED [ 62%] 445s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_byid[write_csv_itr-STCSVMPIBufferV2] PASSED [ 62%] 445s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv-STMPIBuffer] PASSED [ 63%] 446s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv-STCSVMPIBufferV2] PASSED [ 63%] 446s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv_itr-STMPIBuffer] PASSED [ 63%] 446s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv_itr-STCSVMPIBufferV2] PASSED [ 63%] 446s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv-STMPIBuffer] PASSED [ 64%] 446s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv-STCSVMPIBufferV2] PASSED [ 64%] 446s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv_itr-STMPIBuffer] PASSED [ 64%] 446s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv_itr-STCSVMPIBufferV2] PASSED [ 65%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_load_spikes_api PASSED [ 65%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_load_spikes_file PASSED [ 65%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[True-None] PASSED [ 65%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[True-node_groups1] PASSED [ 66%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[True-node_groups2] PASSED [ 66%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-None] PASSED [ 66%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-node_groups1] PASSED [ 66%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-node_groups2] PASSED [ 67%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-None] PASSED [ 67%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-node_groups1] PASSED [ 67%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-node_groups2] PASSED [ 68%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-None] PASSED [ 68%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-node_groups1] PASSED [ 68%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-node_groups2] PASSED [ 68%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-None] PASSED [ 69%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups1] PASSED [ 69%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups2] PASSED [ 69%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[None] PASSED [ 70%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups1] PASSED [ 70%] 446s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups2] PASSED [ 70%] 446s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STMemoryBuffer] PASSED [ 70%] 446s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STCSVBuffer] PASSED [ 71%] 446s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STMemoryBuffer] PASSED [ 71%] 446s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STCSVBuffer] PASSED [ 71%] 446s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STMemoryBuffer] PASSED [ 71%] 446s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STCSVBuffer] PASSED [ 72%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STMemoryBuffer] PASSED [ 72%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STCSVBuffer] PASSED [ 72%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STMemoryBuffer] PASSED [ 73%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STCSVBuffer] PASSED [ 73%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STMemoryBuffer] PASSED [ 73%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STCSVBuffer] PASSED [ 73%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STMemoryBuffer] PASSED [ 74%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STCSVBuffer] PASSED [ 74%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STMemoryBuffer] PASSED [ 74%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STCSVBuffer] PASSED [ 75%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STMemoryBuffer] PASSED [ 75%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STCSVBuffer] PASSED [ 75%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STMemoryBuffer] PASSED [ 75%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STCSVBuffer] PASSED [ 76%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STMemoryBuffer] PASSED [ 76%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STCSVBuffer] PASSED [ 76%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STMemoryBuffer] PASSED [ 76%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STCSVBuffer] PASSED [ 77%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_sonata_reader PASSED [ 77%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_oldsonata_reader PASSED [ 77%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_load_sonata PASSED [ 78%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STMPIBuffer] PASSED [ 78%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STCSVMPIBufferV2] PASSED [ 78%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STMPIBuffer] PASSED [ 78%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 79%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STMPIBuffer] PASSED [ 79%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STCSVMPIBufferV2] PASSED [ 79%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STMPIBuffer] PASSED [ 80%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 80%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STMPIBuffer] PASSED [ 80%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STCSVMPIBufferV2] PASSED [ 80%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STMPIBuffer] PASSED [ 81%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 81%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STMPIBuffer] PASSED [ 81%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STCSVMPIBufferV2] PASSED [ 81%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STMPIBuffer] PASSED [ 82%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 82%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STMPIBuffer] PASSED [ 82%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STCSVMPIBufferV2] PASSED [ 83%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STMPIBuffer] PASSED [ 83%] 447s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 83%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer0] PASSED [ 83%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer1] PASSED [ 84%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer2] PASSED [ 84%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer0] PASSED [ 84%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer1] PASSED [ 85%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer2] PASSED [ 85%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer0] PASSED [ 85%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer1] PASSED [ 85%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer2] PASSED [ 86%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer0] PASSED [ 86%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer1] PASSED [ 86%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer2] PASSED [ 86%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer0] PASSED [ 87%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer1] PASSED [ 87%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer2] PASSED [ 87%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer0] PASSED [ 88%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer1] PASSED [ 88%] 447s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer2] PASSED [ 88%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st0] PASSED [ 88%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st1] PASSED [ 89%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st0] PASSED [ 89%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st1] PASSED [ 89%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st0] PASSED [ 90%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st1] PASSED [ 90%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st0] PASSED [ 90%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st1] PASSED [ 90%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st0] PASSED [ 91%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st1] PASSED [ 91%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st0] PASSED [ 91%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st1] PASSED [ 91%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st0] PASSED [ 92%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st1] PASSED [ 92%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st0] PASSED [ 92%] 447s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st1] PASSED [ 93%] 447s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_fixed PASSED [ 93%] 447s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_variable PASSED [ 93%] 447s tests/utils/reports/spike_trains/test_spikes_core.py::test_equals PASSED [ 93%] 447s tests/utils/reports/spike_trains/test_spikes_core.py::test_subset PASSED [ 94%] 447s tests/utils/sonata/test_config.py::test_json PASSED [ 94%] 447s tests/utils/sonata/test_config.py::test_json_split PASSED [ 94%] 447s tests/utils/sonata/test_config.py::test_dict PASSED [ 95%] 447s tests/utils/sonata/test_config.py::test_build_manifest1 PASSED [ 95%] 447s tests/utils/sonata/test_config.py::test_build_manifest2 PASSED [ 95%] 447s tests/utils/sonata/test_config.py::test_build_manifest_fail1 PASSED [ 95%] 447s tests/utils/sonata/test_config.py::test_build_manifest_fail2 PASSED [ 96%] 447s tests/utils/sonata/test_config.py::test_output_dir PASSED [ 96%] 447s tests/utils/sonata/test_config.py::test_speical_vars PASSED [ 96%] 447s tests/utils/sonata/test_config.py::test_user_vars PASSED [ 96%] 447s tests/utils/sonata/test_config.py::test_node_set_file PASSED [ 97%] 447s tests/utils/sonata/test_config_validator.py::test_valid_config PASSED [ 97%] 447s tests/utils/sonata/test_config_validator.py::test_negative_tstop PASSED [ 97%] 447s tests/utils/sonata/test_config_validator.py::test_missing_nodes_file PASSED [ 98%] 447s tests/utils/sonata/test_config_validator.py::test_inputs PASSED [ 98%] 447s tests/utils/sonata/test_edge_stats.py::test_to_edges_dataframe PASSED [ 98%] 447s tests/utils/sonata/test_edge_stats.py::test_to_nodes_dataframe PASSED [ 98%] 447s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution PASSED [ 99%] 447s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution PASSED [ 99%] 447s tests/utils/sonata/test_edge_stats.py::test_nconnections_distributions PASSED [ 99%] 447s tests/utils/sonata/test_edge_stats.py::test_edge_stats_table PASSED [100%] 447s 447s =============================== warnings summary =============================== 447s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 447s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 447s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 447s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 447s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 447s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 447s /usr/lib/python3/dist-packages/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead. 447s i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill') 447s 447s tests/simulator/core/test_simulation_config_validator.py::test_validate_network 447s /usr/lib/python3/dist-packages/bmtk/simulator/core/simulation_config_validator.py:30: DeprecationWarning: Subclassing validator classes is not intended to be part of their public API. A future version will make doing so an error, as the behavior of subclasses isn't guaranteed to stay the same between releases of jsonschema. Instead, prefer composition of validators, wrapping them in an object owned entirely by the downstream library. 447s class SimulationConfigValidator(Draft4Validator): 447s 447s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4] 447s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5] 447s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError 447s exp_df['max_tf'] = sub_df.idxmax(axis=1).values # sub_df.idxmax(axis=1) 447s 447s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 447s ================= 310 passed, 55 skipped, 9 warnings in 15.52s ================= 448s autopkgtest [17:55:13]: test run-unit-test: -----------------------] 449s autopkgtest [17:55:14]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 449s run-unit-test PASS 449s autopkgtest [17:55:14]: @@@@@@@@@@@@@@@@@@@@ summary 449s run-unit-test PASS 455s nova [W] Skipping flock for amd64 455s Creating nova instance adt-oracular-amd64-bmtk-20240709-174745-juju-7f2275-prod-proposed-migration-environment-3-e79c9b78-475e-4ce5-a8f3-0bf0cb477f35 from image adt/ubuntu-oracular-amd64-server-20240709.img (UUID 6a8b221d-c272-4b1f-96bb-498396b886bc)...