0s autopkgtest [09:01:00]: starting date and time: 2024-07-08 09:01:00+0000 0s autopkgtest [09:01:00]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [09:01:00]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lbgyparg/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pandas --apt-upgrade bmtk --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pandas/2.2.2+dfsg-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-21.secgroup --name adt-oracular-amd64-bmtk-20240708-090100-juju-7f2275-prod-proposed-migration-environment-3-53f7bf74-950a-43dd-a3e7-9701998c19df --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 57s autopkgtest [09:01:57]: testbed dpkg architecture: amd64 57s autopkgtest [09:01:57]: testbed apt version: 2.9.6 57s autopkgtest [09:01:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 57s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 57s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 57s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 57s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.2 kB] 57s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [344 kB] 57s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [101 kB] 57s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [74.0 kB] 57s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2592 B] 57s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 57s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 57s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 57s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [336 kB] 57s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [197 kB] 57s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9628 B] 57s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B] 57s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 57s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 59s Fetched 1298 kB in 0s (4880 kB/s) 59s Reading package lists... 60s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s Calculating upgrade... 61s The following packages will be upgraded: 61s fuse3 libfuse3-3 61s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 109 kB of archives. 61s After this operation, 4096 B of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 fuse3 amd64 3.14.0-6 [25.5 kB] 61s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libfuse3-3 amd64 3.14.0-6 [83.2 kB] 62s Fetched 109 kB in 0s (2934 kB/s) 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74464 files and directories currently installed.) 62s Preparing to unpack .../fuse3_3.14.0-6_amd64.deb ... 62s Adding 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 62s Adding 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 62s Unpacking fuse3 (3.14.0-6) over (3.14.0-5build1) ... 62s Preparing to unpack .../libfuse3-3_3.14.0-6_amd64.deb ... 62s Unpacking libfuse3-3:amd64 (3.14.0-6) over (3.14.0-5build1) ... 62s Setting up libfuse3-3:amd64 (3.14.0-6) ... 62s Setting up fuse3 (3.14.0-6) ... 62s Removing 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 62s Removing 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 62s update-initramfs: deferring update (trigger activated) 62s Processing triggers for libc-bin (2.39-0ubuntu9) ... 62s Processing triggers for man-db (2.12.1-2) ... 64s Processing triggers for initramfs-tools (0.142ubuntu29) ... 64s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 64s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 74s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 75s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 75s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 77s Reading package lists... 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s Calculating upgrade... 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s autopkgtest [09:02:19]: rebooting testbed after setup commands that affected boot 82s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 95s autopkgtest [09:02:35]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 96s autopkgtest [09:02:36]: @@@@@@@@@@@@@@@@@@@@ apt-source bmtk 99s Get:1 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (dsc) [2822 B] 99s Get:2 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (tar) [61.4 MB] 99s Get:3 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (diff) [9240 B] 99s gpgv: Signature made Wed Apr 24 10:27:34 2024 UTC 99s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 99s gpgv: issuer "emollier@debian.org" 99s gpgv: Can't check signature: No public key 99s dpkg-source: warning: cannot verify inline signature for ./bmtk_1.1.0+ds-1.dsc: no acceptable signature found 101s autopkgtest [09:02:41]: testing package bmtk version 1.1.0+ds-1 101s autopkgtest [09:02:41]: build not needed 103s autopkgtest [09:02:43]: test run-unit-test: preparing testbed 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Starting pkgProblemResolver with broken count: 0 105s Starting 2 pkgProblemResolver with broken count: 0 105s Done 105s The following additional packages will be installed: 105s blt fonts-bebas-neue fonts-lyx fonts-mathjax libaec0 libamd-comgr2 105s libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 105s libfabric1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 105s libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 libhsakmt1 105s libhwloc-plugins libhwloc15 libimagequant0 libjs-jquery libjs-jquery-ui 105s libjs-mathjax libjs-requirejs libjs-sphinxdoc libjs-underscore liblapack3 105s liblbfgsb0 liblcms2-2 libllvm17t64 liblzf1 libmunge2 libopenjp2-7 105s libopenmpi3t64 libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 105s libqhull-r8.0 libraqm0 librdmacm1t64 libsz2 libtcl8.6 libtk8.6 libucx0 105s libwebpdemux2 libwebpmux3 libxft2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 105s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 105s python-matplotlib-data python3-all python3-appdirs python3-bmtk 105s python3-bmtk-doc python3-bmtk-examples python3-brotli python3-contourpy 105s python3-cycler python3-dateutil python3-decorator python3-fonttools 105s python3-fs python3-h5py python3-h5py-serial python3-imageio 105s python3-iniconfig python3-kiwisolver python3-lazy-loader python3-lxml 105s python3-lz4 python3-matplotlib python3-mpi4py python3-mpmath 105s python3-networkx python3-numpy python3-packaging python3-pandas 105s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 105s python3-pytest python3-scipy python3-skimage python3-skimage-lib 105s python3-sympy python3-tifffile python3-tk python3-ufolib2 105s python3-unicodedata2 tk8.6-blt2.5 unicode-data x11-common 105s Suggested packages: 105s blt-demo libhwloc-contrib-plugins libjs-jquery-ui-docs fonts-mathjax-extras 105s fonts-stix libjs-mathjax-doc liblcms2-utils tcl8.6 tk8.6 opencl-icd gfortran 105s | fortran-compiler python-cycler-doc python-h5py-doc python-imageio-doc 105s python3-astropy python3-gdal ffmpeg python-lxml-doc cm-super-minimal dvipng 105s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 105s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 105s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 105s python3-gmpy2 python3-pydot python3-pygraphviz gcc gfortran python-numpy-doc 105s python3-dev python-pandas-doc python3-statsmodels python-pil-doc 105s python-scipy-doc python-skimage-doc texlive-fonts-extra python-sympy-doc 105s python3-fsspec tix python3-tk-dbg 105s Recommended packages: 105s javascript-common python3-neuron python3-bs4 python3-cssselect 105s python3-html5lib python3-bottleneck python3-numexpr python3-odf 105s python3-openpyxl python3-tables python3-numba python3-olefile g++ 105s | c++-compiler python3-dask isympy-common 105s The following NEW packages will be installed: 105s autopkgtest-satdep blt fonts-bebas-neue fonts-lyx fonts-mathjax libaec0 105s libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 105s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 libgraphite2-3 105s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 105s libhsakmt1 libhwloc-plugins libhwloc15 libimagequant0 libjs-jquery 105s libjs-jquery-ui libjs-mathjax libjs-requirejs libjs-sphinxdoc 105s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libllvm17t64 liblzf1 105s libmunge2 libopenjp2-7 libopenmpi3t64 libpciaccess0 libpmix2t64 105s libpsm-infinipath1 libpsm2-2 libqhull-r8.0 libraqm0 librdmacm1t64 libsz2 105s libtcl8.6 libtk8.6 libucx0 libwebpdemux2 libwebpmux3 libxft2 libxnvctrl0 105s libxrender1 libxslt1.1 libxss1 mpi-default-bin ocl-icd-libopencl1 105s openmpi-bin openmpi-common python-matplotlib-data python3-all 105s python3-appdirs python3-bmtk python3-bmtk-doc python3-bmtk-examples 105s python3-brotli python3-contourpy python3-cycler python3-dateutil 105s python3-decorator python3-fonttools python3-fs python3-h5py 105s python3-h5py-serial python3-imageio python3-iniconfig python3-kiwisolver 105s python3-lazy-loader python3-lxml python3-lz4 python3-matplotlib 105s python3-mpi4py python3-mpmath python3-networkx python3-numpy 105s python3-packaging python3-pandas python3-pandas-lib python3-pil 105s python3-pil.imagetk python3-pluggy python3-pytest python3-scipy 105s python3-skimage python3-skimage-lib python3-sympy python3-tifffile 105s python3-tk python3-ufolib2 python3-unicodedata2 tk8.6-blt2.5 unicode-data 105s x11-common 105s 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. 105s Need to get 254 MB/254 MB of archives. 105s After this operation, 928 MB of additional disk space will be used. 105s Get:1 /tmp/autopkgtest.Hr56rk/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [744 B] 105s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 105s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 105s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 105s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 105s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 105s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 105s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 105s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 105s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-bebas-neue all 3.0-2 [94.6 kB] 105s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.1-1 [171 kB] 105s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 106s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 106s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-12 [26.2 MB] 106s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 106s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [20.7 kB] 106s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 106s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 106s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamdhip64-5 amd64 5.7.1-4 [9526 kB] 106s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB] 106s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 106s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 106s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 106s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 106s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 librdmacm1t64 amd64 52.0-2 [70.7 kB] 106s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfabric1 amd64 1.17.0-3build2 [657 kB] 106s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 106s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 106s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 106s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 106s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 106s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 106s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 106s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc15 amd64 2.10.0-1build1 [172 kB] 106s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 106s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 106s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 106s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 106s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-sphinxdoc all 7.3.7-3 [154 kB] 106s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 106s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 106s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 106s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 106s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 106s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 106s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 106s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 106s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc-plugins amd64 2.10.0-1build1 [15.7 kB] 106s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpmix2t64 amd64 5.0.1-4.1build1 [697 kB] 106s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 libucx0 amd64 1.16.0+ds-5ubuntu1 [1140 kB] 106s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenmpi3t64 amd64 4.1.6-7ubuntu2 [2563 kB] 106s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 106s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 106s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 106s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 106s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 106s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-common all 4.1.6-7ubuntu2 [170 kB] 106s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-bin amd64 4.1.6-7ubuntu2 [114 kB] 106s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 106s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 106s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 106s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 106s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB] 106s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 106s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 106s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 106s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB] 106s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 106s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B] 106s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 106s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 106s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 106s Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 106s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 106s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 106s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 106s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 106s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 106s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 106s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 106s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 106s Get:82 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 106s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 106s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 106s Get:85 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 106s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB] 106s Get:87 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas-lib amd64 2.2.2+dfsg-4 [4444 kB] 106s Get:88 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas all 2.2.2+dfsg-4 [3111 kB] 106s Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 106s Get:90 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skimage-lib amd64 0.23.2-1ubuntu1 [2271 kB] 106s Get:91 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-imageio all 2.34.2-1 [233 kB] 106s Get:92 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lazy-loader all 0.3-1 [9530 B] 106s Get:93 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tifffile all 20240618-1 [176 kB] 106s Get:94 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skimage all 0.23.2-1ubuntu1 [21.5 MB] 107s Get:95 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk amd64 1.1.0+ds-1 [572 kB] 107s Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 107s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-requirejs all 2.3.6+ds+~2.1.37-1 [201 kB] 107s Get:98 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk-doc all 1.1.0+ds-1 [52.8 MB] 107s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk-examples all 1.1.0+ds-1 [32.6 MB] 108s Get:100 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 108s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 108s Get:102 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 108s Get:103 http://ftpmaster.internal/ubuntu oracular/universe amd64 mpi-default-bin amd64 1.15build1 [2376 B] 108s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpi4py amd64 3.1.6-1 [466 kB] 108s Fetched 254 MB in 2s (102 MB/s) 108s Selecting previously unselected package libtcl8.6:amd64. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74466 files and directories currently installed.) 109s Preparing to unpack .../000-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 109s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 109s Selecting previously unselected package libxrender1:amd64. 109s Preparing to unpack .../001-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 109s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 109s Selecting previously unselected package libxft2:amd64. 109s Preparing to unpack .../002-libxft2_2.3.6-1build1_amd64.deb ... 109s Unpacking libxft2:amd64 (2.3.6-1build1) ... 109s Selecting previously unselected package x11-common. 109s Preparing to unpack .../003-x11-common_1%3a7.7+23ubuntu3_all.deb ... 109s Unpacking x11-common (1:7.7+23ubuntu3) ... 109s Selecting previously unselected package libxss1:amd64. 109s Preparing to unpack .../004-libxss1_1%3a1.2.3-1build3_amd64.deb ... 109s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 109s Selecting previously unselected package libtk8.6:amd64. 109s Preparing to unpack .../005-libtk8.6_8.6.14-1build1_amd64.deb ... 109s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 109s Selecting previously unselected package tk8.6-blt2.5. 109s Preparing to unpack .../006-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 109s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 109s Selecting previously unselected package blt. 109s Preparing to unpack .../007-blt_2.5.3+dfsg-7build1_amd64.deb ... 109s Unpacking blt (2.5.3+dfsg-7build1) ... 109s Selecting previously unselected package fonts-bebas-neue. 109s Preparing to unpack .../008-fonts-bebas-neue_3.0-2_all.deb ... 109s Unpacking fonts-bebas-neue (3.0-2) ... 109s Selecting previously unselected package fonts-lyx. 109s Preparing to unpack .../009-fonts-lyx_2.4.1-1_all.deb ... 109s Unpacking fonts-lyx (2.4.1-1) ... 109s Selecting previously unselected package fonts-mathjax. 109s Preparing to unpack .../010-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 109s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 109s Selecting previously unselected package libaec0:amd64. 109s Preparing to unpack .../011-libaec0_1.1.3-1_amd64.deb ... 109s Unpacking libaec0:amd64 (1.1.3-1) ... 109s Selecting previously unselected package libllvm17t64:amd64. 109s Preparing to unpack .../012-libllvm17t64_1%3a17.0.6-12_amd64.deb ... 109s Unpacking libllvm17t64:amd64 (1:17.0.6-12) ... 110s Selecting previously unselected package libamd-comgr2:amd64. 110s Preparing to unpack .../013-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 110s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 110s Selecting previously unselected package libdrm-amdgpu1:amd64. 110s Preparing to unpack .../014-libdrm-amdgpu1_2.4.121-2_amd64.deb ... 110s Unpacking libdrm-amdgpu1:amd64 (2.4.121-2) ... 110s Selecting previously unselected package libhsakmt1:amd64. 110s Preparing to unpack .../015-libhsakmt1_5.7.0-1build1_amd64.deb ... 110s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 110s Selecting previously unselected package libhsa-runtime64-1. 110s Preparing to unpack .../016-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 110s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 110s Selecting previously unselected package libamdhip64-5. 110s Preparing to unpack .../017-libamdhip64-5_5.7.1-4_amd64.deb ... 110s Unpacking libamdhip64-5 (5.7.1-4) ... 111s Selecting previously unselected package libatomic1:amd64. 111s Preparing to unpack .../018-libatomic1_14.1.0-1ubuntu1_amd64.deb ... 111s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ... 111s Selecting previously unselected package libblas3:amd64. 111s Preparing to unpack .../019-libblas3_3.12.0-3build1_amd64.deb ... 111s Unpacking libblas3:amd64 (3.12.0-3build1) ... 111s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 111s Preparing to unpack .../020-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 111s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 111s Selecting previously unselected package libpsm-infinipath1. 111s Preparing to unpack .../021-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 111s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 111s Selecting previously unselected package libpsm2-2. 111s Preparing to unpack .../022-libpsm2-2_11.2.185-2.1_amd64.deb ... 111s Unpacking libpsm2-2 (11.2.185-2.1) ... 111s Selecting previously unselected package librdmacm1t64:amd64. 111s Preparing to unpack .../023-librdmacm1t64_52.0-2_amd64.deb ... 111s Unpacking librdmacm1t64:amd64 (52.0-2) ... 111s Selecting previously unselected package libfabric1:amd64. 111s Preparing to unpack .../024-libfabric1_1.17.0-3build2_amd64.deb ... 111s Unpacking libfabric1:amd64 (1.17.0-3build2) ... 111s Selecting previously unselected package libgfortran5:amd64. 111s Preparing to unpack .../025-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 111s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 111s Selecting previously unselected package libgomp1:amd64. 111s Preparing to unpack .../026-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 111s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 111s Selecting previously unselected package libgraphite2-3:amd64. 111s Preparing to unpack .../027-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 111s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 111s Selecting previously unselected package libharfbuzz0b:amd64. 111s Preparing to unpack .../028-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 111s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 111s Selecting previously unselected package libsz2:amd64. 111s Preparing to unpack .../029-libsz2_1.1.3-1_amd64.deb ... 111s Unpacking libsz2:amd64 (1.1.3-1) ... 111s Selecting previously unselected package libhdf5-103-1t64:amd64. 111s Preparing to unpack .../030-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 111s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 111s Selecting previously unselected package libhdf5-hl-100t64:amd64. 111s Preparing to unpack .../031-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 111s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 111s Selecting previously unselected package libhwloc15:amd64. 111s Preparing to unpack .../032-libhwloc15_2.10.0-1build1_amd64.deb ... 111s Unpacking libhwloc15:amd64 (2.10.0-1build1) ... 111s Selecting previously unselected package libimagequant0:amd64. 111s Preparing to unpack .../033-libimagequant0_2.18.0-1build1_amd64.deb ... 111s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 111s Selecting previously unselected package libjs-jquery. 111s Preparing to unpack .../034-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 111s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 111s Selecting previously unselected package libjs-jquery-ui. 111s Preparing to unpack .../035-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 111s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 111s Selecting previously unselected package libjs-underscore. 111s Preparing to unpack .../036-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 111s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 111s Selecting previously unselected package libjs-sphinxdoc. 111s Preparing to unpack .../037-libjs-sphinxdoc_7.3.7-3_all.deb ... 111s Unpacking libjs-sphinxdoc (7.3.7-3) ... 111s Selecting previously unselected package liblapack3:amd64. 111s Preparing to unpack .../038-liblapack3_3.12.0-3build1_amd64.deb ... 111s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 111s Selecting previously unselected package liblbfgsb0:amd64. 111s Preparing to unpack .../039-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 111s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 111s Selecting previously unselected package liblcms2-2:amd64. 111s Preparing to unpack .../040-liblcms2-2_2.14-2build1_amd64.deb ... 111s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 111s Selecting previously unselected package liblzf1:amd64. 111s Preparing to unpack .../041-liblzf1_3.6-4_amd64.deb ... 111s Unpacking liblzf1:amd64 (3.6-4) ... 112s Selecting previously unselected package libmunge2:amd64. 112s Preparing to unpack .../042-libmunge2_0.5.15-4build1_amd64.deb ... 112s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 112s Selecting previously unselected package libpciaccess0:amd64. 112s Preparing to unpack .../043-libpciaccess0_0.17-3build1_amd64.deb ... 112s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 112s Selecting previously unselected package libxnvctrl0:amd64. 112s Preparing to unpack .../044-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 112s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 112s Selecting previously unselected package ocl-icd-libopencl1:amd64. 112s Preparing to unpack .../045-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 112s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 112s Selecting previously unselected package libhwloc-plugins:amd64. 112s Preparing to unpack .../046-libhwloc-plugins_2.10.0-1build1_amd64.deb ... 112s Unpacking libhwloc-plugins:amd64 (2.10.0-1build1) ... 112s Selecting previously unselected package libpmix2t64:amd64. 112s Preparing to unpack .../047-libpmix2t64_5.0.1-4.1build1_amd64.deb ... 112s Unpacking libpmix2t64:amd64 (5.0.1-4.1build1) ... 112s Selecting previously unselected package libucx0:amd64. 112s Preparing to unpack .../048-libucx0_1.16.0+ds-5ubuntu1_amd64.deb ... 112s Unpacking libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 112s Selecting previously unselected package libopenmpi3t64:amd64. 112s Preparing to unpack .../049-libopenmpi3t64_4.1.6-7ubuntu2_amd64.deb ... 112s Unpacking libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 112s Selecting previously unselected package libqhull-r8.0:amd64. 112s Preparing to unpack .../050-libqhull-r8.0_2020.2-6build1_amd64.deb ... 112s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 112s Selecting previously unselected package libraqm0:amd64. 112s Preparing to unpack .../051-libraqm0_0.10.1-1build1_amd64.deb ... 112s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 112s Selecting previously unselected package libwebpdemux2:amd64. 112s Preparing to unpack .../052-libwebpdemux2_1.4.0-0.1_amd64.deb ... 112s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 112s Selecting previously unselected package libwebpmux3:amd64. 112s Preparing to unpack .../053-libwebpmux3_1.4.0-0.1_amd64.deb ... 112s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 112s Selecting previously unselected package libxslt1.1:amd64. 112s Preparing to unpack .../054-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 112s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 112s Selecting previously unselected package openmpi-common. 112s Preparing to unpack .../055-openmpi-common_4.1.6-7ubuntu2_all.deb ... 112s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 112s Selecting previously unselected package openmpi-bin. 112s Preparing to unpack .../056-openmpi-bin_4.1.6-7ubuntu2_amd64.deb ... 112s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 112s Selecting previously unselected package python-matplotlib-data. 112s Preparing to unpack .../057-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 112s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 112s Selecting previously unselected package python3-all. 112s Preparing to unpack .../058-python3-all_3.12.3-0ubuntu1_amd64.deb ... 112s Unpacking python3-all (3.12.3-0ubuntu1) ... 112s Selecting previously unselected package python3-appdirs. 112s Preparing to unpack .../059-python3-appdirs_1.4.4-4_all.deb ... 112s Unpacking python3-appdirs (1.4.4-4) ... 112s Selecting previously unselected package python3-numpy. 112s Preparing to unpack .../060-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 112s Unpacking python3-numpy (1:1.26.4+ds-10) ... 113s Selecting previously unselected package python3-h5py-serial. 113s Preparing to unpack .../061-python3-h5py-serial_3.10.0-1ubuntu3_amd64.deb ... 113s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 113s Selecting previously unselected package python3-h5py. 113s Preparing to unpack .../062-python3-h5py_3.10.0-1ubuntu3_all.deb ... 113s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 113s Selecting previously unselected package python3-dateutil. 113s Preparing to unpack .../063-python3-dateutil_2.9.0-2_all.deb ... 113s Unpacking python3-dateutil (2.9.0-2) ... 113s Selecting previously unselected package libopenjp2-7:amd64. 113s Preparing to unpack .../064-libopenjp2-7_2.5.0-2build3_amd64.deb ... 113s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 113s Selecting previously unselected package python3-pil:amd64. 113s Preparing to unpack .../065-python3-pil_10.3.0-2_amd64.deb ... 113s Unpacking python3-pil:amd64 (10.3.0-2) ... 113s Selecting previously unselected package python3-tk:amd64. 113s Preparing to unpack .../066-python3-tk_3.12.3-0ubuntu1_amd64.deb ... 113s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ... 113s Selecting previously unselected package python3-pil.imagetk:amd64. 113s Preparing to unpack .../067-python3-pil.imagetk_10.3.0-2_amd64.deb ... 113s Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ... 113s Selecting previously unselected package python3-contourpy. 113s Preparing to unpack .../068-python3-contourpy_1.0.7-3_amd64.deb ... 113s Unpacking python3-contourpy (1.0.7-3) ... 113s Selecting previously unselected package python3-cycler. 113s Preparing to unpack .../069-python3-cycler_0.12.1-1_all.deb ... 113s Unpacking python3-cycler (0.12.1-1) ... 113s Selecting previously unselected package python3-brotli. 113s Preparing to unpack .../070-python3-brotli_1.1.0-2build2_amd64.deb ... 113s Unpacking python3-brotli (1.1.0-2build2) ... 113s Selecting previously unselected package python3-decorator. 113s Preparing to unpack .../071-python3-decorator_5.1.1-5_all.deb ... 113s Unpacking python3-decorator (5.1.1-5) ... 113s Selecting previously unselected package python3-scipy. 113s Preparing to unpack .../072-python3-scipy_1.12.0-2_amd64.deb ... 113s Unpacking python3-scipy (1.12.0-2) ... 113s Selecting previously unselected package python3-ufolib2. 113s Preparing to unpack .../073-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 113s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 113s Selecting previously unselected package python3-mpmath. 113s Preparing to unpack .../074-python3-mpmath_1.3.0-1_all.deb ... 113s Unpacking python3-mpmath (1.3.0-1) ... 114s Selecting previously unselected package python3-sympy. 114s Preparing to unpack .../075-python3-sympy_1.12-8_all.deb ... 114s Unpacking python3-sympy (1.12-8) ... 114s Selecting previously unselected package python3-fs. 114s Preparing to unpack .../076-python3-fs_2.4.16-4_all.deb ... 114s Unpacking python3-fs (2.4.16-4) ... 114s Selecting previously unselected package python3-lxml:amd64. 114s Preparing to unpack .../077-python3-lxml_5.2.1-1_amd64.deb ... 114s Unpacking python3-lxml:amd64 (5.2.1-1) ... 114s Selecting previously unselected package python3-lz4. 114s Preparing to unpack .../078-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 114s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 114s Selecting previously unselected package python3-unicodedata2. 114s Preparing to unpack .../079-python3-unicodedata2_15.1.0+ds-1build1_amd64.deb ... 114s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 114s Selecting previously unselected package unicode-data. 114s Preparing to unpack .../080-unicode-data_15.1.0-1_all.deb ... 114s Unpacking unicode-data (15.1.0-1) ... 114s Selecting previously unselected package python3-fonttools. 114s Preparing to unpack .../081-python3-fonttools_4.46.0-1build2_amd64.deb ... 114s Unpacking python3-fonttools (4.46.0-1build2) ... 114s Selecting previously unselected package python3-kiwisolver. 114s Preparing to unpack .../082-python3-kiwisolver_1.4.5-1_amd64.deb ... 114s Unpacking python3-kiwisolver (1.4.5-1) ... 114s Selecting previously unselected package python3-packaging. 114s Preparing to unpack .../083-python3-packaging_24.0-1_all.deb ... 114s Unpacking python3-packaging (24.0-1) ... 114s Selecting previously unselected package python3-matplotlib. 114s Preparing to unpack .../084-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ... 114s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 115s Selecting previously unselected package python3-pandas-lib:amd64. 115s Preparing to unpack .../085-python3-pandas-lib_2.2.2+dfsg-4_amd64.deb ... 115s Unpacking python3-pandas-lib:amd64 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143s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 143s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 143s Setting up mpi-default-bin (1.15build1) ... 143s Setting up python3-mpi4py (3.1.6-1) ... 144s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 144s Setting up python3-fonttools (4.46.0-1build2) ... 145s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 146s Setting up python3-skimage (0.23.2-1ubuntu1) ... 147s Setting up python3-bmtk (1.1.0+ds-1) ... 147s /usr/lib/python3/dist-packages/bmtk/simulator/bionet/modules/comsol.py:177: SyntaxWarning: invalid escape sequence '\s' 147s headers = pd.read_csv(comsol_file, sep="\s{3,}", header=None, skiprows=8, nrows=1, engine='python') 147s /usr/lib/python3/dist-packages/bmtk/simulator/bionet/modules/comsol.py:179: SyntaxWarning: invalid escape sequence '\s' 147s data = pd.read_csv(comsol_file, sep="\s+", header=None, skiprows=9) 148s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/util_fns.py:51: SyntaxWarning: invalid escape sequence '\D' 148s gr_fnames_ord = sorted(gr_fnames, key=lambda x: (int(re.sub('\D', '', x)), x)) 148s /usr/lib/python3/dist-packages/bmtk/utils/io/cell_vars.py:19: SyntaxWarning: invalid escape sequence '\*' 148s """A small struct to keep track of different \*/data (and buffer) tables""" 148s /usr/lib/python3/dist-packages/bmtk/utils/sonata/config/sonata_config.py:400: SyntaxWarning: invalid escape sequence '\$' 148s variables = [m for m in re.finditer('\$\{?[\w]+\}?', json_str)] 148s Setting up autopkgtest-satdep (0) ... 148s Processing triggers for libc-bin (2.39-0ubuntu9) ... 148s Processing triggers for man-db (2.12.1-2) ... 260s (Reading database ... 94035 files and directories currently installed.) 260s Removing autopkgtest-satdep (0) ... 549s autopkgtest [09:10:09]: test run-unit-test: [----------------------- 549s ============================= test session starts 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tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups1] PASSED [ 69%] 565s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups2] PASSED [ 69%] 565s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[None] PASSED [ 70%] 565s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups1] PASSED [ 70%] 565s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups2] PASSED [ 70%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STMemoryBuffer] PASSED [ 70%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STCSVBuffer] PASSED [ 71%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STMemoryBuffer] PASSED [ 71%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STCSVBuffer] PASSED [ 71%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STMemoryBuffer] PASSED [ 71%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STCSVBuffer] PASSED [ 72%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STMemoryBuffer] PASSED [ 72%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STCSVBuffer] PASSED [ 72%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STMemoryBuffer] PASSED [ 73%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STCSVBuffer] PASSED [ 73%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STMemoryBuffer] PASSED [ 73%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STCSVBuffer] PASSED [ 73%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STMemoryBuffer] PASSED [ 74%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STCSVBuffer] PASSED [ 74%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STMemoryBuffer] PASSED [ 74%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STCSVBuffer] PASSED [ 75%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STMemoryBuffer] PASSED [ 75%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STCSVBuffer] PASSED [ 75%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STMemoryBuffer] PASSED [ 75%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STCSVBuffer] PASSED [ 76%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STMemoryBuffer] PASSED [ 76%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STCSVBuffer] PASSED [ 76%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STMemoryBuffer] PASSED [ 76%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STCSVBuffer] PASSED [ 77%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_sonata_reader PASSED [ 77%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_oldsonata_reader PASSED [ 77%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_load_sonata PASSED [ 78%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STMPIBuffer] PASSED [ 78%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STCSVMPIBufferV2] PASSED [ 78%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STMPIBuffer] PASSED [ 78%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 79%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STMPIBuffer] PASSED [ 79%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STCSVMPIBufferV2] PASSED [ 79%] 565s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STMPIBuffer] PASSED [ 80%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 80%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STMPIBuffer] PASSED [ 80%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STCSVMPIBufferV2] PASSED [ 80%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STMPIBuffer] PASSED [ 81%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 81%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STMPIBuffer] PASSED [ 81%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STCSVMPIBufferV2] PASSED [ 81%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STMPIBuffer] PASSED [ 82%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 82%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STMPIBuffer] PASSED [ 82%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STCSVMPIBufferV2] PASSED [ 83%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STMPIBuffer] PASSED [ 83%] 566s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 83%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer0] PASSED [ 83%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer1] PASSED [ 84%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer2] PASSED [ 84%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer0] PASSED [ 84%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer1] PASSED [ 85%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer2] PASSED [ 85%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer0] PASSED [ 85%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer1] PASSED [ 85%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer2] PASSED [ 86%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer0] PASSED [ 86%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer1] PASSED [ 86%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer2] PASSED [ 86%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer0] PASSED [ 87%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer1] PASSED [ 87%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer2] PASSED [ 87%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer0] PASSED [ 88%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer1] PASSED [ 88%] 566s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer2] PASSED [ 88%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st0] PASSED [ 88%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st1] PASSED [ 89%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st0] PASSED [ 89%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st1] PASSED [ 89%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st0] PASSED [ 90%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st1] PASSED [ 90%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st0] PASSED [ 90%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st1] PASSED [ 90%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st0] PASSED [ 91%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st1] PASSED [ 91%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st0] PASSED [ 91%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st1] PASSED [ 91%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st0] PASSED [ 92%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st1] PASSED [ 92%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st0] PASSED [ 92%] 566s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st1] PASSED [ 93%] 566s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_fixed PASSED [ 93%] 566s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_variable PASSED [ 93%] 566s tests/utils/reports/spike_trains/test_spikes_core.py::test_equals PASSED [ 93%] 566s tests/utils/reports/spike_trains/test_spikes_core.py::test_subset PASSED [ 94%] 566s tests/utils/sonata/test_config.py::test_json PASSED [ 94%] 566s tests/utils/sonata/test_config.py::test_json_split PASSED [ 94%] 566s tests/utils/sonata/test_config.py::test_dict PASSED [ 95%] 566s tests/utils/sonata/test_config.py::test_build_manifest1 PASSED [ 95%] 566s tests/utils/sonata/test_config.py::test_build_manifest2 PASSED [ 95%] 566s tests/utils/sonata/test_config.py::test_build_manifest_fail1 PASSED [ 95%] 566s tests/utils/sonata/test_config.py::test_build_manifest_fail2 PASSED [ 96%] 566s tests/utils/sonata/test_config.py::test_output_dir PASSED [ 96%] 566s tests/utils/sonata/test_config.py::test_speical_vars PASSED [ 96%] 566s tests/utils/sonata/test_config.py::test_user_vars PASSED [ 96%] 566s tests/utils/sonata/test_config.py::test_node_set_file PASSED [ 97%] 566s tests/utils/sonata/test_config_validator.py::test_valid_config PASSED [ 97%] 566s tests/utils/sonata/test_config_validator.py::test_negative_tstop PASSED [ 97%] 566s tests/utils/sonata/test_config_validator.py::test_missing_nodes_file PASSED [ 98%] 566s tests/utils/sonata/test_config_validator.py::test_inputs PASSED [ 98%] 566s tests/utils/sonata/test_edge_stats.py::test_to_edges_dataframe PASSED [ 98%] 566s tests/utils/sonata/test_edge_stats.py::test_to_nodes_dataframe PASSED [ 98%] 566s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution PASSED [ 99%] 566s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution PASSED [ 99%] 566s tests/utils/sonata/test_edge_stats.py::test_nconnections_distributions PASSED [ 99%] 566s tests/utils/sonata/test_edge_stats.py::test_edge_stats_table PASSED [100%] 566s 566s =============================== warnings summary =============================== 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s /usr/lib/python3/dist-packages/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead. 566s i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill') 566s 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s /usr/lib/python3/dist-packages/bmtk/builder/index_builders.py:206: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. 566s The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. 566s 566s For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. 566s 566s 566s i2r_table_df['range_end'].fillna(0, inplace=True) 566s 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 566s /usr/lib/python3/dist-packages/bmtk/builder/index_builders.py:209: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 566s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 566s A typical example is when you are setting values in a column of a DataFrame, like: 566s 566s df["col"][row_indexer] = value 566s 566s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 566s 566s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 566s 566s i2r_table_df['range_beg'][nans_mask] = i2r_table_df['range_end'][nans_mask] 566s 566s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4] 566s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5] 566s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError 566s exp_df['max_tf'] = sub_df.idxmax(axis=1).values # sub_df.idxmax(axis=1) 566s 566s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution 566s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution 566s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution 566s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution 566s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution 566s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution 566s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution 566s /usr/lib/python3/dist-packages/bmtk/utils/sonata/edge_stats.py:282: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 566s edges_df[edge_prop] = fill_val if edge_prop not in edges_df.columns else edges_df[edge_prop].fillna(fill_val) 566s 566s tests/utils/sonata/test_edge_stats.py::test_edge_stats_table 566s /usr/lib/python3/dist-packages/bmtk/utils/sonata/edge_stats.py:434: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 566s edges_df['nsyns'] = 1 if 'nsyns' not in edges_df.columns else edges_df['nsyns'].fillna(1) 566s 566s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 566s ================ 310 passed, 55 skipped, 28 warnings in 16.59s ================= 567s autopkgtest [09:10:27]: test run-unit-test: -----------------------] 612s run-unit-test PASS 612s autopkgtest [09:11:12]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 676s autopkgtest [09:12:16]: @@@@@@@@@@@@@@@@@@@@ summary 676s run-unit-test PASS 717s nova [W] Skipping flock for amd64 717s Creating nova instance adt-oracular-amd64-bmtk-20240708-090100-juju-7f2275-prod-proposed-migration-environment-3-53f7bf74-950a-43dd-a3e7-9701998c19df from image adt/ubuntu-oracular-amd64-server-20240707.img (UUID a564d08f-b120-4297-9fe1-fa5551c3a09b)...