0s autopkgtest [00:17:50]: starting date and time: 2024-06-08 00:17:50+0000 0s autopkgtest [00:17:50]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [00:17:50]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pwezqu76/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade bmtk --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-93.secgroup --name adt-oracular-amd64-bmtk-20240608-001749-juju-7f2275-prod-proposed-migration-environment-2-e44d15d4-46b7-4cfb-8dcf-5f9c744abec7 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 97s autopkgtest [00:19:27]: testbed dpkg architecture: amd64 97s autopkgtest [00:19:27]: testbed apt version: 2.9.3 97s autopkgtest [00:19:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 98s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 98s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [339 kB] 98s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 98s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 98s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2852 B] 98s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [37.8 kB] 98s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [65.6 kB] 98s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [27.4 kB] 98s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [9340 B] 98s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [124 kB] 98s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [300 kB] 98s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3368 B] 98s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [9280 B] 98s Fetched 1081 kB in 0s (3797 kB/s) 98s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s Calculating upgrade... 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 103s Reading package lists... 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Calculating upgrade... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [00:19:36]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 106s autopkgtest [00:19:36]: @@@@@@@@@@@@@@@@@@@@ apt-source bmtk 108s Get:1 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (dsc) [2822 B] 108s Get:2 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (tar) [61.4 MB] 108s Get:3 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (diff) [9240 B] 108s gpgv: Signature made Wed Apr 24 10:27:34 2024 UTC 108s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 108s gpgv: issuer "emollier@debian.org" 108s gpgv: Can't check signature: No public key 108s dpkg-source: warning: cannot verify inline signature for ./bmtk_1.1.0+ds-1.dsc: no acceptable signature found 111s autopkgtest [00:19:41]: testing package bmtk version 1.1.0+ds-1 111s autopkgtest [00:19:41]: build not needed 112s autopkgtest [00:19:42]: test run-unit-test: preparing testbed 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Starting pkgProblemResolver with broken count: 0 113s Starting 2 pkgProblemResolver with broken count: 0 113s Done 114s The following additional packages will be installed: 114s blt fonts-bebas-neue fonts-lyx fonts-mathjax libaec0 libamd-comgr2 114s libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 114s libfabric1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 114s libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 libhsakmt1 114s libhwloc-plugins libhwloc15 libimagequant0 libjs-jquery libjs-jquery-ui 114s libjs-mathjax libjs-requirejs libjs-sphinxdoc libjs-underscore liblapack3 114s liblbfgsb0 liblcms2-2 libllvm17t64 liblzf1 libmunge2 libopenjp2-7 114s libopenmpi3t64 libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 114s libqhull-r8.0 libraqm0 librdmacm1t64 libsz2 libtcl8.6 libtk8.6 libucx0 114s libwebpdemux2 libwebpmux3 libxft2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 114s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 114s python-matplotlib-data python3-all python3-appdirs python3-bmtk 114s python3-bmtk-doc python3-bmtk-examples python3-brotli python3-contourpy 114s python3-cycler python3-dateutil python3-decorator python3-fonttools 114s python3-fs python3-h5py python3-h5py-serial python3-imageio 114s python3-iniconfig python3-kiwisolver python3-lazy-loader python3-lxml 114s python3-lz4 python3-matplotlib python3-mpi4py python3-mpmath 114s python3-networkx python3-numpy python3-packaging python3-pandas 114s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 114s python3-pytest python3-scipy python3-skimage python3-skimage-lib 114s python3-sympy python3-tifffile python3-tk python3-ufolib2 114s python3-unicodedata2 tk8.6-blt2.5 unicode-data x11-common 114s Suggested packages: 114s blt-demo libhwloc-contrib-plugins libjs-jquery-ui-docs fonts-mathjax-extras 114s fonts-stix libjs-mathjax-doc liblcms2-utils tcl8.6 tk8.6 opencl-icd gfortran 114s | fortran-compiler python-cycler-doc python-h5py-doc python-imageio-doc 114s python3-astropy python3-gdal ffmpeg python-lxml-doc cm-super-minimal dvipng 114s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 114s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 114s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 114s python3-gmpy2 python3-pydot python3-pygraphviz gcc gfortran python-numpy-doc 114s python3-dev python-pandas-doc python3-statsmodels python-pil-doc 114s python-scipy-doc python-skimage-doc texlive-fonts-extra python-sympy-doc 114s python3-fsspec tix python3-tk-dbg 114s Recommended packages: 114s javascript-common python3-neuron python3-bs4 python3-cssselect 114s python3-html5lib python3-bottleneck python3-numexpr python3-odf 114s python3-openpyxl python3-tables python3-numba python3-olefile g++ 114s | c++-compiler python3-dask isympy-common 114s The following NEW packages will be installed: 114s autopkgtest-satdep blt fonts-bebas-neue fonts-lyx fonts-mathjax libaec0 114s libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 114s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 libgraphite2-3 114s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 114s libhsakmt1 libhwloc-plugins libhwloc15 libimagequant0 libjs-jquery 114s libjs-jquery-ui libjs-mathjax libjs-requirejs libjs-sphinxdoc 114s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libllvm17t64 liblzf1 114s libmunge2 libopenjp2-7 libopenmpi3t64 libpciaccess0 libpmix2t64 114s libpsm-infinipath1 libpsm2-2 libqhull-r8.0 libraqm0 librdmacm1t64 libsz2 114s libtcl8.6 libtk8.6 libucx0 libwebpdemux2 libwebpmux3 libxft2 libxnvctrl0 114s libxrender1 libxslt1.1 libxss1 mpi-default-bin ocl-icd-libopencl1 114s openmpi-bin openmpi-common python-matplotlib-data python3-all 114s python3-appdirs python3-bmtk python3-bmtk-doc python3-bmtk-examples 114s python3-brotli python3-contourpy python3-cycler python3-dateutil 114s python3-decorator python3-fonttools python3-fs python3-h5py 114s python3-h5py-serial python3-imageio python3-iniconfig python3-kiwisolver 114s python3-lazy-loader python3-lxml python3-lz4 python3-matplotlib 114s python3-mpi4py python3-mpmath python3-networkx python3-numpy 114s python3-packaging python3-pandas python3-pandas-lib python3-pil 114s python3-pil.imagetk python3-pluggy python3-pytest python3-scipy 114s python3-skimage python3-skimage-lib python3-sympy python3-tifffile 114s python3-tk python3-ufolib2 python3-unicodedata2 tk8.6-blt2.5 unicode-data 114s x11-common 114s 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. 114s Need to get 253 MB/253 MB of archives. 114s After this operation, 922 MB of additional disk space will be used. 114s Get:1 /tmp/autopkgtest.cQ75IH/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [744 B] 114s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 114s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 114s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 114s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 114s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 114s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 114s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 114s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 114s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-bebas-neue all 3.0-2 [94.6 kB] 114s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.0-1 [171 kB] 114s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 114s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 114s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-12 [26.2 MB] 114s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 115s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.120-2build1 [20.2 kB] 115s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 115s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 115s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamdhip64-5 amd64 5.7.1-3 [9621 kB] 115s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB] 115s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 115s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 115s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 115s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm2-2 amd64 11.2.185-2build1 [194 kB] 115s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 librdmacm1t64 amd64 50.0-2build2 [70.7 kB] 115s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfabric1 amd64 1.17.0-3build2 [657 kB] 115s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 115s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 115s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2build1 [73.0 kB] 115s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 115s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 115s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 115s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 115s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc15 amd64 2.10.0-1build1 [172 kB] 115s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 115s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 115s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 115s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 115s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-sphinxdoc all 7.2.6-8 [150 kB] 115s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 115s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 115s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 115s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 115s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 115s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 115s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 115s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 115s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc-plugins amd64 2.10.0-1build1 [15.7 kB] 115s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpmix2t64 amd64 5.0.1-4.1build1 [697 kB] 115s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 libucx0 amd64 1.16.0+ds-5ubuntu1 [1140 kB] 115s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenmpi3t64 amd64 4.1.6-7ubuntu2 [2563 kB] 115s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 115s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 115s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 115s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 115s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 115s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-common all 4.1.6-7ubuntu2 [170 kB] 115s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-bin amd64 4.1.6-7ubuntu2 [114 kB] 115s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 115s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 115s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 115s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 115s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB] 115s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 115s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 115s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 115s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB] 115s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 115s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B] 115s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 115s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 115s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 115s Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 115s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.11.4-10 [15.5 MB] 115s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 115s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 115s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 115s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 115s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 115s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 115s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 115s Get:82 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 115s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 115s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 115s Get:85 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 115s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB] 115s Get:87 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB] 115s Get:88 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 115s Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 115s Get:90 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skimage-lib amd64 0.23.2-1ubuntu1 [2271 kB] 116s Get:91 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-imageio all 2.34.1-1 [233 kB] 116s Get:92 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lazy-loader all 0.3-1 [9530 B] 116s Get:93 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tifffile all 20240522-1 [175 kB] 116s Get:94 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skimage all 0.23.2-1ubuntu1 [21.5 MB] 116s Get:95 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk amd64 1.1.0+ds-1 [572 kB] 116s Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 116s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-requirejs all 2.3.6+ds+~2.1.37-1 [201 kB] 116s Get:98 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk-doc all 1.1.0+ds-1 [52.8 MB] 116s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk-examples all 1.1.0+ds-1 [32.6 MB] 116s Get:100 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 116s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 116s Get:102 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pytest all 8.2.2-1ubuntu1 [250 kB] 116s Get:103 http://ftpmaster.internal/ubuntu oracular/universe amd64 mpi-default-bin amd64 1.15build1 [2376 B] 116s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpi4py amd64 3.1.6-1 [466 kB] 117s Fetched 253 MB in 3s (95.5 MB/s) 117s Selecting previously unselected package libtcl8.6:amd64. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74365 files and directories currently installed.) 117s Preparing to unpack .../000-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 117s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 117s Selecting previously unselected package libxrender1:amd64. 117s Preparing to unpack .../001-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 117s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 117s Selecting previously unselected package libxft2:amd64. 117s Preparing to unpack .../002-libxft2_2.3.6-1build1_amd64.deb ... 117s Unpacking libxft2:amd64 (2.3.6-1build1) ... 117s Selecting previously unselected package x11-common. 117s Preparing to unpack .../003-x11-common_1%3a7.7+23ubuntu3_all.deb ... 117s Unpacking x11-common (1:7.7+23ubuntu3) ... 118s Selecting previously unselected package libxss1:amd64. 118s Preparing to unpack .../004-libxss1_1%3a1.2.3-1build3_amd64.deb ... 118s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 118s Selecting previously unselected package libtk8.6:amd64. 118s Preparing to unpack .../005-libtk8.6_8.6.14-1build1_amd64.deb ... 118s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 118s Selecting previously unselected package tk8.6-blt2.5. 118s Preparing to unpack .../006-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 118s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 118s Selecting previously unselected package blt. 118s Preparing to unpack .../007-blt_2.5.3+dfsg-7build1_amd64.deb ... 118s Unpacking blt (2.5.3+dfsg-7build1) ... 118s Selecting previously unselected package fonts-bebas-neue. 118s Preparing to unpack .../008-fonts-bebas-neue_3.0-2_all.deb ... 118s Unpacking fonts-bebas-neue (3.0-2) ... 118s Selecting previously unselected package fonts-lyx. 118s Preparing to unpack .../009-fonts-lyx_2.4.0-1_all.deb ... 118s Unpacking fonts-lyx (2.4.0-1) ... 118s Selecting previously unselected package fonts-mathjax. 118s Preparing to unpack .../010-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 118s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 118s Selecting previously unselected package libaec0:amd64. 118s Preparing to unpack .../011-libaec0_1.1.3-1_amd64.deb ... 118s Unpacking libaec0:amd64 (1.1.3-1) ... 118s Selecting previously unselected package libllvm17t64:amd64. 118s Preparing to unpack .../012-libllvm17t64_1%3a17.0.6-12_amd64.deb ... 118s Unpacking libllvm17t64:amd64 (1:17.0.6-12) ... 119s Selecting previously unselected package libamd-comgr2:amd64. 119s Preparing to unpack .../013-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 119s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 119s Selecting previously unselected package libdrm-amdgpu1:amd64. 119s Preparing to unpack .../014-libdrm-amdgpu1_2.4.120-2build1_amd64.deb ... 119s Unpacking libdrm-amdgpu1:amd64 (2.4.120-2build1) ... 119s Selecting previously unselected package libhsakmt1:amd64. 119s Preparing to unpack .../015-libhsakmt1_5.7.0-1build1_amd64.deb ... 119s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 119s Selecting previously unselected package libhsa-runtime64-1. 119s Preparing to unpack .../016-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 119s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 119s Selecting previously unselected package libamdhip64-5. 119s Preparing to unpack .../017-libamdhip64-5_5.7.1-3_amd64.deb ... 119s Unpacking libamdhip64-5 (5.7.1-3) ... 119s Selecting previously unselected package libatomic1:amd64. 119s Preparing to unpack .../018-libatomic1_14.1.0-1ubuntu1_amd64.deb ... 119s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ... 119s Selecting previously unselected package libblas3:amd64. 119s Preparing to unpack .../019-libblas3_3.12.0-3build1_amd64.deb ... 119s Unpacking libblas3:amd64 (3.12.0-3build1) ... 119s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 119s Preparing to unpack .../020-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 119s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 119s Selecting previously unselected package libpsm-infinipath1. 119s Preparing to unpack .../021-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 119s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 119s Selecting previously unselected package libpsm2-2. 119s Preparing to unpack .../022-libpsm2-2_11.2.185-2build1_amd64.deb ... 119s Unpacking libpsm2-2 (11.2.185-2build1) ... 119s Selecting previously unselected package librdmacm1t64:amd64. 119s Preparing to unpack .../023-librdmacm1t64_50.0-2build2_amd64.deb ... 119s Unpacking librdmacm1t64:amd64 (50.0-2build2) ... 119s Selecting previously unselected package libfabric1:amd64. 119s Preparing to unpack .../024-libfabric1_1.17.0-3build2_amd64.deb ... 119s Unpacking libfabric1:amd64 (1.17.0-3build2) ... 119s Selecting previously unselected package libgfortran5:amd64. 119s Preparing to unpack .../025-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 119s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 120s Selecting previously unselected package libgomp1:amd64. 120s Preparing to unpack .../026-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 120s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 120s Selecting previously unselected package libgraphite2-3:amd64. 120s Preparing to unpack .../027-libgraphite2-3_1.3.14-2build1_amd64.deb ... 120s Unpacking libgraphite2-3:amd64 (1.3.14-2build1) ... 120s Selecting previously unselected package libharfbuzz0b:amd64. 120s Preparing to unpack .../028-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 120s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 120s Selecting previously unselected package libsz2:amd64. 120s Preparing to unpack .../029-libsz2_1.1.3-1_amd64.deb ... 120s Unpacking libsz2:amd64 (1.1.3-1) ... 120s Selecting previously unselected package libhdf5-103-1t64:amd64. 120s Preparing to unpack .../030-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 120s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 120s Selecting previously unselected package libhdf5-hl-100t64:amd64. 120s Preparing to unpack .../031-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 120s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 120s Selecting previously unselected package libhwloc15:amd64. 120s Preparing to unpack .../032-libhwloc15_2.10.0-1build1_amd64.deb ... 120s Unpacking libhwloc15:amd64 (2.10.0-1build1) ... 120s Selecting previously unselected package libimagequant0:amd64. 120s Preparing to unpack .../033-libimagequant0_2.18.0-1build1_amd64.deb ... 120s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 120s Selecting previously unselected package libjs-jquery. 120s Preparing to unpack .../034-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 120s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 120s Selecting previously unselected package libjs-jquery-ui. 120s Preparing to unpack .../035-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 120s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 120s Selecting previously unselected package libjs-underscore. 120s Preparing to unpack .../036-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 120s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 120s Selecting previously unselected package libjs-sphinxdoc. 120s Preparing to unpack .../037-libjs-sphinxdoc_7.2.6-8_all.deb ... 120s Unpacking libjs-sphinxdoc (7.2.6-8) ... 120s Selecting previously unselected package liblapack3:amd64. 120s Preparing to unpack .../038-liblapack3_3.12.0-3build1_amd64.deb ... 120s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 120s Selecting previously unselected package liblbfgsb0:amd64. 120s Preparing to unpack .../039-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 120s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 120s Selecting previously unselected package liblcms2-2:amd64. 120s Preparing to unpack .../040-liblcms2-2_2.14-2build1_amd64.deb ... 120s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 120s Selecting previously unselected package liblzf1:amd64. 120s Preparing to unpack .../041-liblzf1_3.6-4_amd64.deb ... 120s Unpacking liblzf1:amd64 (3.6-4) ... 120s Selecting previously unselected package libmunge2:amd64. 120s Preparing to unpack .../042-libmunge2_0.5.15-4build1_amd64.deb ... 120s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 120s Selecting previously unselected package libpciaccess0:amd64. 120s Preparing to unpack .../043-libpciaccess0_0.17-3build1_amd64.deb ... 120s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 120s Selecting previously unselected package libxnvctrl0:amd64. 120s Preparing to unpack .../044-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 120s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 120s Selecting previously unselected package ocl-icd-libopencl1:amd64. 120s Preparing to unpack .../045-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 120s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 120s Selecting previously unselected package libhwloc-plugins:amd64. 120s Preparing to unpack .../046-libhwloc-plugins_2.10.0-1build1_amd64.deb ... 120s Unpacking libhwloc-plugins:amd64 (2.10.0-1build1) ... 120s Selecting previously unselected package libpmix2t64:amd64. 120s Preparing to unpack .../047-libpmix2t64_5.0.1-4.1build1_amd64.deb ... 120s Unpacking libpmix2t64:amd64 (5.0.1-4.1build1) ... 120s Selecting previously unselected package libucx0:amd64. 120s Preparing to unpack .../048-libucx0_1.16.0+ds-5ubuntu1_amd64.deb ... 120s Unpacking libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 120s Selecting previously unselected package libopenmpi3t64:amd64. 120s Preparing to unpack .../049-libopenmpi3t64_4.1.6-7ubuntu2_amd64.deb ... 120s Unpacking libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 121s Selecting previously unselected package libqhull-r8.0:amd64. 121s Preparing to unpack .../050-libqhull-r8.0_2020.2-6build1_amd64.deb ... 121s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 121s Selecting previously unselected package libraqm0:amd64. 121s Preparing to unpack .../051-libraqm0_0.10.1-1build1_amd64.deb ... 121s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 121s Selecting previously unselected package libwebpdemux2:amd64. 121s Preparing to unpack .../052-libwebpdemux2_1.4.0-0.1_amd64.deb ... 121s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 121s Selecting previously unselected package libwebpmux3:amd64. 121s Preparing to unpack .../053-libwebpmux3_1.4.0-0.1_amd64.deb ... 121s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 121s Selecting previously unselected package libxslt1.1:amd64. 121s Preparing to unpack .../054-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 121s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 121s Selecting previously unselected package openmpi-common. 121s Preparing to unpack .../055-openmpi-common_4.1.6-7ubuntu2_all.deb ... 121s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 121s Selecting previously unselected package openmpi-bin. 121s Preparing to unpack .../056-openmpi-bin_4.1.6-7ubuntu2_amd64.deb ... 121s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 121s Selecting previously unselected package python-matplotlib-data. 121s Preparing to unpack .../057-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 121s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 121s Selecting previously unselected package python3-all. 121s Preparing to unpack .../058-python3-all_3.12.3-0ubuntu1_amd64.deb ... 121s Unpacking python3-all (3.12.3-0ubuntu1) ... 121s Selecting previously unselected package python3-appdirs. 121s Preparing to unpack .../059-python3-appdirs_1.4.4-4_all.deb ... 121s Unpacking python3-appdirs (1.4.4-4) ... 121s Selecting previously unselected package python3-numpy. 121s Preparing to unpack .../060-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 121s Unpacking python3-numpy (1:1.26.4+ds-10) ... 121s Selecting previously unselected package python3-h5py-serial. 121s Preparing to unpack .../061-python3-h5py-serial_3.10.0-1ubuntu3_amd64.deb ... 121s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 121s Selecting previously unselected package python3-h5py. 121s Preparing to unpack .../062-python3-h5py_3.10.0-1ubuntu3_all.deb ... 121s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 121s Selecting previously unselected package python3-dateutil. 121s Preparing to unpack .../063-python3-dateutil_2.9.0-2_all.deb ... 121s Unpacking python3-dateutil (2.9.0-2) ... 121s Selecting previously unselected package libopenjp2-7:amd64. 121s Preparing to unpack .../064-libopenjp2-7_2.5.0-2build3_amd64.deb ... 121s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 121s Selecting previously unselected package python3-pil:amd64. 121s Preparing to unpack .../065-python3-pil_10.3.0-2_amd64.deb ... 121s Unpacking python3-pil:amd64 (10.3.0-2) ... 121s Selecting previously unselected package python3-tk:amd64. 121s Preparing to unpack .../066-python3-tk_3.12.3-0ubuntu1_amd64.deb ... 121s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ... 121s Selecting previously unselected package python3-pil.imagetk:amd64. 121s Preparing to unpack .../067-python3-pil.imagetk_10.3.0-2_amd64.deb ... 121s Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ... 121s Selecting previously unselected package python3-contourpy. 121s Preparing to unpack .../068-python3-contourpy_1.0.7-3_amd64.deb ... 121s Unpacking python3-contourpy (1.0.7-3) ... 122s Selecting previously unselected package python3-cycler. 122s Preparing to unpack .../069-python3-cycler_0.12.1-1_all.deb ... 122s Unpacking python3-cycler (0.12.1-1) ... 122s Selecting previously unselected package python3-brotli. 122s Preparing to unpack .../070-python3-brotli_1.1.0-2build2_amd64.deb ... 122s Unpacking python3-brotli (1.1.0-2build2) ... 122s Selecting previously unselected package python3-decorator. 122s Preparing to unpack .../071-python3-decorator_5.1.1-5_all.deb ... 122s Unpacking python3-decorator (5.1.1-5) ... 122s Selecting previously unselected package python3-scipy. 122s Preparing to unpack .../072-python3-scipy_1.11.4-10_amd64.deb ... 122s Unpacking python3-scipy (1.11.4-10) ... 122s Selecting previously unselected package python3-ufolib2. 122s Preparing to unpack .../073-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 122s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 122s Selecting previously unselected package python3-mpmath. 122s Preparing to unpack .../074-python3-mpmath_1.3.0-1_all.deb ... 122s Unpacking python3-mpmath (1.3.0-1) ... 122s Selecting previously unselected package python3-sympy. 122s Preparing to unpack .../075-python3-sympy_1.12-8_all.deb ... 122s Unpacking python3-sympy (1.12-8) ... 122s Selecting previously unselected package python3-fs. 122s Preparing to unpack .../076-python3-fs_2.4.16-4_all.deb ... 122s Unpacking python3-fs (2.4.16-4) ... 123s Selecting previously unselected package python3-lxml:amd64. 123s Preparing to unpack .../077-python3-lxml_5.2.1-1_amd64.deb ... 123s Unpacking python3-lxml:amd64 (5.2.1-1) ... 123s Selecting previously unselected package python3-lz4. 123s Preparing to unpack .../078-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 123s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 123s Selecting previously unselected package python3-unicodedata2. 123s Preparing to unpack .../079-python3-unicodedata2_15.1.0+ds-1build1_amd64.deb ... 123s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 123s Selecting previously unselected package unicode-data. 123s Preparing to unpack .../080-unicode-data_15.1.0-1_all.deb ... 123s Unpacking unicode-data (15.1.0-1) ... 123s Selecting previously unselected package python3-fonttools. 123s Preparing to unpack .../081-python3-fonttools_4.46.0-1build2_amd64.deb ... 123s Unpacking python3-fonttools (4.46.0-1build2) ... 123s Selecting previously unselected package python3-kiwisolver. 123s Preparing to unpack .../082-python3-kiwisolver_1.4.5-1_amd64.deb ... 123s Unpacking python3-kiwisolver (1.4.5-1) ... 123s Selecting previously unselected package python3-packaging. 123s Preparing to unpack .../083-python3-packaging_24.0-1_all.deb ... 123s Unpacking python3-packaging (24.0-1) ... 123s Selecting previously unselected package python3-matplotlib. 123s Preparing to unpack .../084-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ... 123s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 123s Selecting previously unselected package python3-pandas-lib:amd64. 123s Preparing to unpack .../085-python3-pandas-lib_2.1.4+dfsg-8_amd64.deb ... 123s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 123s Selecting previously unselected package python3-pandas. 123s Preparing to unpack .../086-python3-pandas_2.1.4+dfsg-8_all.deb ... 123s Unpacking python3-pandas (2.1.4+dfsg-8) ... 124s Selecting previously unselected package python3-networkx. 124s Preparing to unpack .../087-python3-networkx_3.2.1-4ubuntu1_all.deb ... 124s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 124s Selecting previously unselected package python3-skimage-lib:amd64. 124s Preparing to unpack .../088-python3-skimage-lib_0.23.2-1ubuntu1_amd64.deb ... 124s Unpacking python3-skimage-lib:amd64 (0.23.2-1ubuntu1) ... 124s Selecting previously unselected package python3-imageio. 124s Preparing to unpack .../089-python3-imageio_2.34.1-1_all.deb ... 124s Unpacking python3-imageio (2.34.1-1) ... 124s Selecting previously unselected package python3-lazy-loader. 124s Preparing to unpack .../090-python3-lazy-loader_0.3-1_all.deb ... 124s Unpacking python3-lazy-loader (0.3-1) ... 125s Selecting previously unselected package python3-tifffile. 125s Preparing to unpack .../091-python3-tifffile_20240522-1_all.deb ... 125s Unpacking python3-tifffile (20240522-1) ... 125s Selecting previously unselected package python3-skimage. 125s Preparing to unpack .../092-python3-skimage_0.23.2-1ubuntu1_all.deb ... 125s Unpacking python3-skimage (0.23.2-1ubuntu1) ... 125s Selecting previously unselected package python3-bmtk. 125s Preparing to unpack .../093-python3-bmtk_1.1.0+ds-1_amd64.deb ... 125s Unpacking python3-bmtk (1.1.0+ds-1) ... 125s Selecting previously unselected package libjs-mathjax. 125s Preparing to unpack .../094-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 125s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 126s Selecting previously unselected package libjs-requirejs. 126s Preparing to unpack .../095-libjs-requirejs_2.3.6+ds+~2.1.37-1_all.deb ... 126s Unpacking libjs-requirejs (2.3.6+ds+~2.1.37-1) ... 126s Selecting previously unselected package python3-bmtk-doc. 126s Preparing to unpack .../096-python3-bmtk-doc_1.1.0+ds-1_all.deb ... 126s Unpacking python3-bmtk-doc (1.1.0+ds-1) ... 126s Selecting previously unselected package python3-bmtk-examples. 126s Preparing to unpack .../097-python3-bmtk-examples_1.1.0+ds-1_all.deb ... 126s Unpacking python3-bmtk-examples (1.1.0+ds-1) ... 127s Selecting previously unselected package python3-iniconfig. 127s Preparing to unpack .../098-python3-iniconfig_1.1.1-2_all.deb ... 127s Unpacking python3-iniconfig (1.1.1-2) ... 127s Selecting previously unselected package python3-pluggy. 127s Preparing to unpack .../099-python3-pluggy_1.5.0-1_all.deb ... 127s Unpacking python3-pluggy (1.5.0-1) ... 127s Selecting previously unselected package python3-pytest. 127s Preparing to unpack .../100-python3-pytest_8.2.2-1ubuntu1_all.deb ... 127s Unpacking python3-pytest (8.2.2-1ubuntu1) ... 127s Selecting previously unselected package mpi-default-bin. 127s Preparing to unpack .../101-mpi-default-bin_1.15build1_amd64.deb ... 127s Unpacking mpi-default-bin (1.15build1) ... 127s Selecting previously unselected package python3-mpi4py. 127s Preparing to unpack .../102-python3-mpi4py_3.1.6-1_amd64.deb ... 127s Unpacking python3-mpi4py (3.1.6-1) ... 127s Selecting previously unselected package autopkgtest-satdep. 127s Preparing to unpack .../103-1-autopkgtest-satdep.deb ... 127s Unpacking autopkgtest-satdep (0) ... 127s Setting up libgraphite2-3:amd64 (1.3.14-2build1) ... 127s Setting up liblcms2-2:amd64 (2.14-2build1) ... 127s Setting up python3-iniconfig (1.1.1-2) ... 127s Setting up libpciaccess0:amd64 (0.17-3build1) ... 127s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 127s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 127s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 127s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 127s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 127s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 127s Setting up fonts-lyx (2.4.0-1) ... 127s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 127s Setting up x11-common (1:7.7+23ubuntu3) ... 128s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 128s Setting up python3-all (3.12.3-0ubuntu1) ... 128s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 128s Setting up libjs-requirejs (2.3.6+ds+~2.1.37-1) ... 128s Setting up python3-networkx (3.2.1-4ubuntu1) ... 129s Setting up libaec0:amd64 (1.1.3-1) ... 129s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 129s Setting up unicode-data (15.1.0-1) ... 129s Setting up python3-decorator (5.1.1-5) ... 129s Setting up libblas3:amd64 (3.12.0-3build1) ... 129s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 129s Setting up python3-packaging (24.0-1) ... 129s Setting up libmunge2:amd64 (0.5.15-4build1) ... 129s Setting up libllvm17t64:amd64 (1:17.0.6-12) ... 129s Setting up python3-brotli (1.1.0-2build2) ... 130s Setting up liblzf1:amd64 (3.6-4) ... 130s Setting up python3-cycler (0.12.1-1) ... 130s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 130s Setting up python3-kiwisolver (1.4.5-1) ... 130s Setting up libhwloc15:amd64 (2.10.0-1build1) ... 130s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ... 130s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 130s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 130s Setting up python3-pluggy (1.5.0-1) ... 130s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 130s Setting up fonts-bebas-neue (3.0-2) ... 130s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 130s Setting up libpsm2-2 (11.2.185-2build1) ... 130s Setting up openmpi-common (4.1.6-7ubuntu2) ... 130s Setting up librdmacm1t64:amd64 (50.0-2build2) ... 130s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 130s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... 130s Setting up python3-dateutil (2.9.0-2) ... 130s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 130s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 130s Setting up python3-lazy-loader (0.3-1) ... 130s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 130s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 130s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 130s Setting up python3-mpmath (1.3.0-1) ... 131s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 131s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 131s Setting up python3-appdirs (1.4.4-4) ... 131s Setting up libsz2:amd64 (1.1.3-1) ... 131s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 131s Setting up python3-bmtk-examples (1.1.0+ds-1) ... 131s Setting up libdrm-amdgpu1:amd64 (2.4.120-2build1) ... 131s Setting up libfabric1:amd64 (1.17.0-3build2) ... 131s Setting up python3-sympy (1.12-8) ... 138s Setting up liblapack3:amd64 (3.12.0-3build1) ... 138s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 138s Setting up libxft2:amd64 (2.3.6-1build1) ... 138s Setting up python3-pytest (8.2.2-1ubuntu1) ... 138s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 138s Setting up libhwloc-plugins:amd64 (2.10.0-1build1) ... 138s Setting up python3-fs (2.4.16-4) ... 139s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 139s Setting up libraqm0:amd64 (0.10.1-1build1) ... 139s Setting up libpmix2t64:amd64 (5.0.1-4.1build1) ... 139s Setting up python3-numpy (1:1.26.4+ds-10) ... 141s Setting up libjs-sphinxdoc (7.2.6-8) ... 141s Setting up python3-lxml:amd64 (5.2.1-1) ... 141s Setting up python3-contourpy (1.0.7-3) ... 141s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 141s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 141s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 141s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 141s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 141s Setting up python3-scipy (1.11.4-10) ... 145s Setting up python3-skimage-lib:amd64 (0.23.2-1ubuntu1) ... 145s Setting up python3-bmtk-doc (1.1.0+ds-1) ... 145s Setting up blt (2.5.3+dfsg-7build1) ... 145s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 145s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 145s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ... 145s Setting up python3-tifffile (20240522-1) ... 146s Setting up python3-pil:amd64 (10.3.0-2) ... 146s Setting up python3-pandas (2.1.4+dfsg-8) ... 151s Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... 151s Setting up python3-h5py (3.10.0-1ubuntu3) ... 151s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 151s Setting up python3-imageio (2.34.1-1) ... 152s Setting up libamdhip64-5 (5.7.1-3) ... 152s Setting up libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 152s Setting up libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 152s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 152s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 152s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 152s Setting up mpi-default-bin (1.15build1) ... 152s Setting up python3-mpi4py (3.1.6-1) ... 152s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 152s Setting up python3-fonttools (4.46.0-1build2) ... 153s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 155s Setting up python3-skimage (0.23.2-1ubuntu1) ... 156s Setting up python3-bmtk (1.1.0+ds-1) ... 156s /usr/lib/python3/dist-packages/bmtk/simulator/bionet/modules/comsol.py:177: SyntaxWarning: invalid escape sequence '\s' 156s headers = pd.read_csv(comsol_file, sep="\s{3,}", header=None, skiprows=8, nrows=1, engine='python') 156s /usr/lib/python3/dist-packages/bmtk/simulator/bionet/modules/comsol.py:179: SyntaxWarning: invalid escape sequence '\s' 156s data = pd.read_csv(comsol_file, sep="\s+", header=None, skiprows=9) 156s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/util_fns.py:51: SyntaxWarning: invalid escape sequence '\D' 156s gr_fnames_ord = sorted(gr_fnames, key=lambda x: (int(re.sub('\D', '', x)), x)) 156s /usr/lib/python3/dist-packages/bmtk/utils/io/cell_vars.py:19: SyntaxWarning: invalid escape sequence '\*' 156s """A small struct to keep track of different \*/data (and buffer) tables""" 156s /usr/lib/python3/dist-packages/bmtk/utils/sonata/config/sonata_config.py:400: SyntaxWarning: invalid escape sequence '\$' 156s variables = [m for m in re.finditer('\$\{?[\w]+\}?', json_str)] 156s Setting up autopkgtest-satdep (0) ... 156s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 156s Processing triggers for man-db (2.12.1-1) ... 163s (Reading database ... 93844 files and directories currently installed.) 163s Removing autopkgtest-satdep (0) ... 163s autopkgtest [00:20:33]: test run-unit-test: [----------------------- 163s ============================= test session starts ============================== 163s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 -- /usr/bin/python3.12 163s cachedir: .pytest_cache 163s rootdir: /tmp/autopkgtest.cQ75IH/autopkgtest_tmp 167s collecting ... collected 360 items / 5 skipped 167s 167s tests/builder/auxi/test_edge_connectors.py::test_distance_connector PASSED [ 0%] 167s tests/builder/auxi/test_edge_connectors.py::test_connect_random PASSED [ 0%] 167s tests/builder/auxi/test_node_params.py::test_positions_columinar PASSED [ 0%] 167s tests/builder/auxi/test_node_params.py::test_positions_cuboid PASSED [ 1%] 167s tests/builder/auxi/test_node_params.py::test_positions_list PASSED [ 1%] 167s tests/builder/auxi/test_node_params.py::test_positions_rect_prism PASSED [ 1%] 167s tests/builder/auxi/test_node_params.py::test_positions_ellipsoid PASSED [ 1%] 167s tests/builder/auxi/test_node_params.py::test_positions_density_matrix PASSED [ 2%] 167s tests/builder/auxi/test_node_params.py::test_positions_nrrd SKIPPED [ 2%] 167s tests/builder/test_connection_map.py::test_connection_map_fnc PASSED [ 2%] 167s tests/builder/test_connection_map.py::test_connection_map_num PASSED [ 3%] 167s tests/builder/test_connection_map.py::test_connection_map_list PASSED [ 3%] 167s tests/builder/test_connection_map.py::test_connection_map_dict PASSED [ 3%] 167s tests/builder/test_connection_map.py::test_cm_params1 PASSED [ 3%] 167s tests/builder/test_connection_map.py::test_cm_params2 PASSED [ 4%] 167s tests/builder/test_connection_map.py::test_cm_params3 PASSED [ 4%] 167s tests/builder/test_connector.py::test_fnc_params PASSED [ 4%] 167s tests/builder/test_connector.py::test_fnc_noparams PASSED [ 5%] 167s tests/builder/test_connector.py::test_literal PASSED [ 5%] 167s tests/builder/test_connector.py::test_list PASSED [ 5%] 167s tests/builder/test_connector.py::test_dict PASSED [ 5%] 167s tests/builder/test_densenetwork.py::test_save_nsyn_table[DenseNetwork] PASSED [ 6%] 168s tests/builder/test_densenetwork.py::test_save_weights[DenseNetwork] PASSED [ 6%] 168s tests/builder/test_densenetwork.py::test_save_multinetwork[DenseNetwork] PASSED [ 6%] 168s tests/builder/test_edge_iterator.py::test_itr_basic PASSED [ 6%] 168s tests/builder/test_edge_iterator.py::test_itr_advanced_search PASSED [ 7%] 168s tests/builder/test_edge_iterator.py::test_mulitnet_iterator PASSED [ 7%] 169s tests/builder/test_edges_sorter.py::test_sort[quicksort_edges-sort_params0] PASSED [ 7%] 169s tests/builder/test_edges_sorter.py::test_sort[external_merge_sort-sort_params1] PASSED [ 8%] 169s tests/builder/test_edges_sorter.py::test_sort[external_merge_sort-sort_params2] PASSED [ 8%] 169s tests/builder/test_id_generator.py::test_generator PASSED [ 8%] 169s tests/builder/test_id_generator.py::test_get_ids PASSED [ 8%] 169s tests/builder/test_id_generator.py::test_call PASSED [ 9%] 169s tests/builder/test_id_generator.py::test_generator_initval PASSED [ 9%] 169s tests/builder/test_id_generator.py::test_contains PASSED [ 9%] 169s tests/builder/test_id_generator.py::test_remove PASSED [ 10%] 169s tests/builder/test_index_builders.py::test_create_index[create_index_in_memory-indexer_args0] PASSED [ 10%] 169s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] PASSED [ 10%] 169s tests/builder/test_iterator.py::test_one2one_fnc PASSED [ 10%] 169s tests/builder/test_iterator.py::test_one2all_fnc PASSED [ 11%] 169s tests/builder/test_iterator.py::test_all2one_fnc PASSED [ 11%] 169s tests/builder/test_iterator.py::test_literal PASSED [ 11%] 169s tests/builder/test_iterator.py::test_dict PASSED [ 11%] 169s tests/builder/test_iterator.py::test_one2one_list PASSED [ 12%] 169s tests/builder/test_iterator.py::test_one2all_list PASSED [ 12%] 169s tests/builder/test_iterator.py::test_all2one_list PASSED [ 12%] 169s tests/builder/test_network.py::test_basic PASSED [ 13%] 169s tests/builder/test_network.py::test_no_name PASSED [ 13%] 169s tests/builder/test_network.py::test_add_nodes PASSED [ 13%] 169s tests/builder/test_network.py::test_add_nodes_tuples PASSED [ 13%] 169s tests/builder/test_network.py::test_add_node_ids PASSED [ 14%] 169s tests/builder/test_network.py::test_add_node_ids_mixed PASSED [ 14%] 169s tests/builder/test_network.py::test_add_nodes_mismatch_params PASSED [ 14%] 169s tests/builder/test_network.py::test_duplicate_node_ids PASSED [ 15%] 169s tests/builder/test_network.py::test_duplicate_node_type_ids PASSED [ 15%] 169s tests/builder/test_network.py::test_add_edges PASSED [ 15%] 169s tests/builder/test_network.py::test_add_edges_custom_params PASSED [ 15%] 169s tests/builder/test_network.py::test_cross_pop_edges PASSED [ 16%] 169s tests/builder/test_network_mpi.py::test_create_network_dir_mpi SKIPPED [ 16%] 169s tests/builder/test_network_mpi.py::test_check_properties_mpi SKIPPED [ 16%] 169s tests/builder/test_network_mpi.py::test_check_nonuniform_args SKIPPED [ 16%] 169s tests/builder/test_network_mpi.py::test_nonuniform_str_mpi SKIPPED (...) [ 17%] 169s tests/builder/test_network_mpi.py::test_nonuniform_int_mpi SKIPPED (...) [ 17%] 169s tests/builder/test_network_mpi.py::test_nonuniform_float_mpi SKIPPED [ 17%] 169s tests/builder/test_network_mpi.py::test_nonuniform_list_mpi SKIPPED [ 18%] 169s tests/builder/test_network_mpi.py::test_nonuniform_array_mpi SKIPPED [ 18%] 169s tests/builder/test_node_pool.py::test_single_node PASSED [ 18%] 169s tests/builder/test_node_pool.py::test_node_set PASSED [ 18%] 169s tests/builder/test_node_pool.py::test_node_sets PASSED [ 19%] 169s tests/builder/test_node_pool.py::test_multi_search PASSED [ 19%] 169s tests/builder/test_node_pool.py::test_failed_search PASSED [ 19%] 169s tests/builder/test_node_set.py::test_node_set PASSED [ 20%] 169s tests/builder/test_node_set.py::test_set_hash PASSED [ 20%] 169s tests/builder/test_node_set.py::test_node PASSED [ 20%] 169s tests/builder/test_save_network.py::test_basic PASSED [ 20%] 169s tests/builder/test_save_network.py::test_multi_node_models PASSED [ 21%] 170s tests/builder/test_save_network.py::test_edge_models PASSED [ 21%] 170s tests/builder/test_save_network.py::test_connection_map PASSED [ 21%] 170s tests/builder/test_save_network.py::test_cross_population_edges PASSED [ 21%] 170s tests/builder/test_save_network.py::test_compression PASSED [ 22%] 170s tests/simulator/bionet/test_biograph.py::test_add_nodes SKIPPED (unc...) [ 22%] 170s tests/simulator/bionet/test_biograph.py::test_add_edges SKIPPED (unc...) [ 22%] 170s tests/simulator/bionet/test_gids.py::test_gid_pool SKIPPED (NEURON i...) [ 23%] 170s tests/simulator/bionet/test_nrn.py::test_weight SKIPPED (NEURON is n...) [ 23%] 170s tests/simulator/bionet/test_nrn.py::test_weight_decorator SKIPPED (N...) [ 23%] 170s tests/simulator/bionet/test_nrn.py::test_synapse_model SKIPPED (NEUR...) [ 23%] 170s tests/simulator/bionet/test_nrn.py::test_synapse_model_decorator SKIPPED [ 24%] 170s tests/simulator/bionet/test_nrn.py::test_cell_model SKIPPED (uncondi...) [ 24%] 170s tests/simulator/bionet/test_nrn.py::test_cell_model_decorator SKIPPED [ 24%] 170s tests/simulator/bionet/test_nrn.py::test_load_py_modules SKIPPED (un...) [ 25%] 170s tests/simulator/core/test_ecephys_module.py::test_basic SKIPPED (pyn...) [ 25%] 170s tests/simulator/core/test_ecephys_module.py::test_interval_defaults SKIPPED [ 25%] 170s tests/simulator/core/test_ecephys_module.py::test_unit_intervals_lu SKIPPED [ 25%] 170s tests/simulator/core/test_ecephys_module.py::test_load_map_strategy SKIPPED [ 26%] 170s tests/simulator/core/test_ecephys_module.py::test_filter_units SKIPPED [ 26%] 170s tests/simulator/core/test_ecephys_module.py::test_unit_map_strategy SKIPPED [ 26%] 170s tests/simulator/core/test_ecephys_module.py::test_sampling_strategy SKIPPED [ 26%] 170s tests/simulator/core/test_iclamp.py::test_AmpsReader[mod_args0] PASSED [ 27%] 170s tests/simulator/core/test_iclamp.py::test_AmpsReader[mod_args1] PASSED [ 27%] 170s tests/simulator/core/test_iclamp.py::test_AmpsReader_invalid[mod_args0] PASSED [ 27%] 170s tests/simulator/core/test_iclamp.py::test_AmpsReader_invalid[mod_args1] PASSED [ 28%] 170s tests/simulator/core/test_iclamp.py::test_AmpsReader_invalid[mod_args2] PASSED [ 28%] 170s tests/simulator/core/test_io_tools.py::test_setup PASSED [ 28%] 170s tests/simulator/core/test_io_tools.py::test_logging PASSED [ 28%] 170s tests/simulator/core/test_pyfunction_cache.py::test_add_cell_model PASSED [ 29%] 170s tests/simulator/core/test_pyfunction_cache.py::test_add_cell_model_decorator PASSED [ 29%] 170s tests/simulator/core/test_pyfunction_cache.py::test_add_model_nomodeltype PASSED [ 29%] 170s tests/simulator/core/test_pyfunction_cache.py::test_synpatic_weight PASSED [ 30%] 170s tests/simulator/core/test_pyfunction_cache.py::test_synpase_model PASSED [ 30%] 170s tests/simulator/core/test_pyfunction_cache.py::test_cell_processor PASSED [ 30%] 170s tests/simulator/core/test_simulation_config.py::test_build_env PASSED [ 30%] 170s tests/simulator/core/test_simulation_config.py::test_overwrite PASSED [ 31%] 170s tests/simulator/core/test_simulation_config_validator.py::test_validate_network PASSED [ 31%] 170s tests/simulator/core/test_simulation_config_validator.py::test_validate_components PASSED [ 31%] 170s tests/simulator/core/test_simulation_config_validator.py::test_validate_inputs PASSED [ 31%] 170s tests/simulator/filternet/lgnmodel/test_kernels.py::test_spatialfilter_kernel PASSED [ 32%] 170s tests/simulator/filternet/lgnmodel/test_kernels.py::test_temporalfilter_kernel PASSED [ 32%] 171s tests/simulator/filternet/lgnmodel/test_kernels.py::test_spatiotemporalfilter_kernel PASSED [ 32%] 171s tests/simulator/filternet/lgnmodel/test_movie.py::test_movie PASSED [ 33%] 171s tests/simulator/filternet/lgnmodel/test_movie.py::test_add_movies PASSED [ 33%] 173s tests/simulator/filternet/lgnmodel/test_movie.py::test_grating PASSED [ 33%] 173s tests/simulator/filternet/lgnmodel/test_movie.py::test_normalize_array PASSED [ 33%] 173s tests/simulator/filternet/lgnmodel/test_movie.py::test_normalize_array_invalid PASSED [ 34%] 173s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[tOFF-expected_val0] PASSED [ 34%] 173s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[tON-expected_val1] PASSED [ 34%] 173s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sOFF-expected_val2] PASSED [ 35%] 173s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sON-expected_val3] PASSED [ 35%] 173s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4] PASSED [ 35%] 173s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5] PASSED [ 35%] 173s tests/simulator/filternet/lgnmodel/test_transferfunction.py::test_heaviside PASSED [ 36%] 173s tests/simulator/filternet/lgnmodel/test_units.py::test_onunit PASSED [ 36%] 173s tests/simulator/filternet/lgnmodel/test_units.py::test_offunit PASSED [ 36%] 173s tests/simulator/filternet/lgnmodel/test_units.py::test_lgnonoffcell PASSED [ 36%] 173s tests/simulator/filternet/lgnmodel/test_units.py::test_twosubfieldlinearcell PASSED [ 37%] 173s tests/simulator/filternet/lgnmodel/test_utils.py::test_get_tcross_from_temporal_kernel PASSED [ 37%] 173s tests/simulator/filternet/test_default_setters.py::test_onunit[tON_TF8-expected_val0] PASSED [ 37%] 173s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF1-expected_val1] PASSED [ 38%] 173s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF2-expected_val2] PASSED [ 38%] 173s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF4-expected_val3] PASSED [ 38%] 173s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF8-expected_val4] PASSED [ 38%] 173s tests/simulator/filternet/test_default_setters.py::test_onunit[sON_TF15-expected_val5] PASSED [ 39%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF1-expected_val0] PASSED [ 39%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF2-expected_val1] PASSED [ 39%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF4-expected_val2] PASSED [ 40%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF8-expected_val3] PASSED [ 40%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[tOFF_TF15-expected_val4] PASSED [ 40%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF1-expected_val5] PASSED [ 40%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF2-expected_val6] PASSED [ 41%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF4-expected_val7] PASSED [ 41%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF8-expected_val8] PASSED [ 41%] 174s tests/simulator/filternet/test_default_setters.py::test_offunit[sOFF_TF15-expected_val9] PASSED [ 41%] 174s tests/simulator/filternet/test_default_setters.py::test_sONsOFF[sONsOFF_001-expected_val0] PASSED [ 42%] 174s tests/simulator/filternet/test_default_setters.py::test_sONtOFF[sONsOFF_001-expected_val0] PASSED [ 42%] 176s tests/simulator/filternet/test_filternet_movies.py::test_filtersimulator_add_movie_with_phase PASSED [ 42%] 176s tests/simulator/pointnet/test_multimeter_report.py::test_multimeter_dt[0.001] SKIPPED [ 43%] 176s tests/simulator/pointnet/test_multimeter_report.py::test_multimeter_dt[1.0] SKIPPED [ 43%] 176s tests/simulator/pointnet/test_multimeter_report.py::test_multimeter_dt[5.0] SKIPPED [ 43%] 176s tests/simulator/pointnet/test_multimeter_report.py::test_multimeter_dt[10.0] SKIPPED [ 43%] 176s tests/simulator/pointnet/test_pointgraph.py::test_add_nodes SKIPPED [ 44%] 176s tests/simulator/pointnet/test_pointgraph.py::test_add_edges SKIPPED [ 44%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_nodes[True] SKIPPED [ 44%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_nodes[False] SKIPPED [ 45%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_multi_nodes[True] SKIPPED [ 45%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_multi_nodes[False] SKIPPED [ 45%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_edges SKIPPED [ 45%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_edges_baddelay SKIPPED [ 46%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times0] SKIPPED [ 46%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times1] SKIPPED [ 46%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[None] SKIPPED [ 46%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times3] SKIPPED [ 47%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times4] SKIPPED [ 47%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times5] SKIPPED [ 47%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains[spike_times6] SKIPPED [ 48%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains_badtimes[spike_times0] SKIPPED [ 48%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains_badtimes[spike_times1] SKIPPED [ 48%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains_badtimes[spike_times2] SKIPPED [ 48%] 176s tests/simulator/pointnet/test_pointnetwork.py::test_add_spike_trains_badtimes[spike_times3] SKIPPED [ 49%] 176s tests/simulator/popnet/test_popgraph.py::test_add_nodes SKIPPED (unc...) [ 49%] 176s tests/simulator/utils/test_simulation_inputs.py::test_sim_inputs PASSED [ 49%] 176s tests/simulator/utils/test_simulation_inputs.py::test_sim_inputs_disable PASSED [ 50%] 176s tests/simulator/utils/test_simulation_inputs.py::test_no_module PASSED [ 50%] 176s tests/simulator/utils/test_simulation_inputs.py::test_no_input_type PASSED [ 50%] 176s tests/simulator/utils/test_simulation_inputs.py::test_registry PASSED [ 50%] 176s tests/simulator/utils/test_simulation_reports.py::test_sim_report PASSED [ 51%] 176s tests/simulator/utils/test_simulation_reports.py::test_sim_report_disabled PASSED [ 51%] 176s tests/simulator/utils/test_simulation_reports.py::test_registry PASSED [ 51%] 176s tests/simulator/utils/test_simulation_reports.py::test_from_config PASSED [ 51%] 176s tests/utils/reports/compartment/test_compartment_reader.py::test_compartment_reader PASSED [ 52%] 176s tests/utils/reports/compartment/test_compartment_reader.py::test_compartment_reader2 PASSED [ 52%] 176s tests/utils/reports/compartment/test_compartment_writer.py::test_one_compartment_report PASSED [ 52%] 176s tests/utils/reports/compartment/test_compartment_writer.py::test_multi_compartment_report PASSED [ 53%] 177s tests/utils/reports/compartment/test_compartment_writer.py::test_multi_cell_report PASSED [ 53%] 177s tests/utils/reports/compartment/test_compartment_writer.py::test_multi_population_report PASSED [ 53%] 178s tests/utils/reports/compartment/test_compartment_writer.py::test_block_record PASSED [ 53%] 178s tests/utils/reports/compartment/test_compartment_writer.py::test_custom_columns PASSED [ 54%] 178s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[None-False-None] PASSED [ 54%] 178s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[node_ids1-False-None] PASSED [ 54%] 178s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[node_ids2-True-None] PASSED [ 55%] 178s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[None-True-None] PASSED [ 55%] 178s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[None-True-node_groups4] PASSED [ 55%] 178s tests/utils/reports/compartment/test_plotting.py::test_plot_traces[None-False-node_groups5] PASSED [ 55%] 178s tests/utils/reports/compartment/test_plotting.py::test_plot_single_trace[1-v1] PASSED [ 56%] 178s tests/utils/reports/compartment/test_plotting.py::test_plot_single_trace[3-v1] PASSED [ 56%] 178s tests/utils/reports/compartment/test_plotting.py::test_plot_invalid_id PASSED [ 56%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv[write_csv-STMemoryBuffer] PASSED [ 56%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv[write_csv-STCSVBuffer] PASSED [ 57%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv[write_csv_itr-STMemoryBuffer] PASSED [ 57%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv[write_csv_itr-STCSVBuffer] PASSED [ 57%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_bytime[write_csv-STMemoryBuffer] PASSED [ 58%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_bytime[write_csv-STCSVBuffer] PASSED [ 58%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_bytime[write_csv_itr-STMemoryBuffer] PASSED [ 58%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_bytime[write_csv_itr-STCSVBuffer] PASSED [ 58%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_byid[write_csv-STMemoryBuffer] PASSED [ 59%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_byid[write_csv-STCSVBuffer] PASSED [ 59%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_byid[write_csv_itr-STMemoryBuffer] PASSED [ 59%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_byid[write_csv_itr-STCSVBuffer] PASSED [ 60%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader PASSED [ 60%] 178s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader_nopop PASSED [ 60%] 178s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv-STMPIBuffer] PASSED [ 60%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv-STCSVMPIBufferV2] PASSED [ 61%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv_itr-STMPIBuffer] PASSED [ 61%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv_itr-STCSVMPIBufferV2] PASSED [ 61%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_byid[write_csv-STMPIBuffer] PASSED [ 61%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_byid[write_csv-STCSVMPIBufferV2] PASSED [ 62%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_byid[write_csv_itr-STMPIBuffer] PASSED [ 62%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_byid[write_csv_itr-STCSVMPIBufferV2] PASSED [ 62%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv-STMPIBuffer] PASSED [ 63%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv-STCSVMPIBufferV2] PASSED [ 63%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv_itr-STMPIBuffer] PASSED [ 63%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv_itr-STCSVMPIBufferV2] PASSED [ 63%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv-STMPIBuffer] PASSED [ 64%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv-STCSVMPIBufferV2] PASSED [ 64%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv_itr-STMPIBuffer] PASSED [ 64%] 179s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv_itr-STCSVMPIBufferV2] PASSED [ 65%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_load_spikes_api PASSED [ 65%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_load_spikes_file PASSED [ 65%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[True-None] PASSED [ 65%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[True-node_groups1] PASSED [ 66%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[True-node_groups2] PASSED [ 66%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-None] PASSED [ 66%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-node_groups1] PASSED [ 66%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-node_groups2] PASSED [ 67%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-None] PASSED [ 67%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-node_groups1] PASSED [ 67%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-node_groups2] PASSED [ 68%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-None] PASSED [ 68%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-node_groups1] PASSED [ 68%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-node_groups2] PASSED [ 68%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-None] PASSED [ 69%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups1] PASSED [ 69%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups2] PASSED [ 69%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[None] PASSED [ 70%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups1] PASSED [ 70%] 179s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups2] PASSED [ 70%] 179s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STMemoryBuffer] PASSED [ 70%] 179s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STCSVBuffer] PASSED [ 71%] 179s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STMemoryBuffer] PASSED [ 71%] 179s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STCSVBuffer] PASSED [ 71%] 179s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STMemoryBuffer] PASSED [ 71%] 179s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STCSVBuffer] PASSED [ 72%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STMemoryBuffer] PASSED [ 72%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STCSVBuffer] PASSED [ 72%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STMemoryBuffer] PASSED [ 73%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STCSVBuffer] PASSED [ 73%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STMemoryBuffer] PASSED [ 73%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STCSVBuffer] PASSED [ 73%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STMemoryBuffer] PASSED [ 74%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STCSVBuffer] PASSED [ 74%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STMemoryBuffer] PASSED [ 74%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STCSVBuffer] PASSED [ 75%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STMemoryBuffer] PASSED [ 75%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STCSVBuffer] PASSED [ 75%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STMemoryBuffer] PASSED [ 75%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STCSVBuffer] PASSED [ 76%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STMemoryBuffer] PASSED [ 76%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STCSVBuffer] PASSED [ 76%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STMemoryBuffer] PASSED [ 76%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STCSVBuffer] PASSED [ 77%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_sonata_reader PASSED [ 77%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_oldsonata_reader PASSED [ 77%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_load_sonata PASSED [ 78%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STMPIBuffer] PASSED [ 78%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STCSVMPIBufferV2] PASSED [ 78%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STMPIBuffer] PASSED [ 78%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 79%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STMPIBuffer] PASSED [ 79%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STCSVMPIBufferV2] PASSED [ 79%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STMPIBuffer] PASSED [ 80%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 80%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STMPIBuffer] PASSED [ 80%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STCSVMPIBufferV2] PASSED [ 80%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STMPIBuffer] PASSED [ 81%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 81%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STMPIBuffer] PASSED [ 81%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STCSVMPIBufferV2] PASSED [ 81%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STMPIBuffer] PASSED [ 82%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 82%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STMPIBuffer] PASSED [ 82%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STCSVMPIBufferV2] PASSED [ 83%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STMPIBuffer] PASSED [ 83%] 180s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 83%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer0] PASSED [ 83%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer1] PASSED [ 84%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer2] PASSED [ 84%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer0] PASSED [ 84%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer1] PASSED [ 85%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer2] PASSED [ 85%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer0] PASSED [ 85%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer1] PASSED [ 85%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer2] PASSED [ 86%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer0] PASSED [ 86%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer1] PASSED [ 86%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer2] PASSED [ 86%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer0] PASSED [ 87%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer1] PASSED [ 87%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer2] PASSED [ 87%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer0] PASSED [ 88%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer1] PASSED [ 88%] 180s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer2] PASSED [ 88%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st0] PASSED [ 88%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st1] PASSED [ 89%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st0] PASSED [ 89%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st1] PASSED [ 89%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st0] PASSED [ 90%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st1] PASSED [ 90%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st0] PASSED [ 90%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st1] PASSED [ 90%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st0] PASSED [ 91%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st1] PASSED [ 91%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st0] PASSED [ 91%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st1] PASSED [ 91%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st0] PASSED [ 92%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st1] PASSED [ 92%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st0] PASSED [ 92%] 180s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st1] PASSED [ 93%] 180s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_fixed PASSED [ 93%] 180s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_variable PASSED [ 93%] 180s tests/utils/reports/spike_trains/test_spikes_core.py::test_equals PASSED [ 93%] 180s tests/utils/reports/spike_trains/test_spikes_core.py::test_subset PASSED [ 94%] 180s tests/utils/sonata/test_config.py::test_json PASSED [ 94%] 180s tests/utils/sonata/test_config.py::test_json_split PASSED [ 94%] 180s tests/utils/sonata/test_config.py::test_dict PASSED [ 95%] 180s tests/utils/sonata/test_config.py::test_build_manifest1 PASSED [ 95%] 180s tests/utils/sonata/test_config.py::test_build_manifest2 PASSED [ 95%] 180s tests/utils/sonata/test_config.py::test_build_manifest_fail1 PASSED [ 95%] 180s tests/utils/sonata/test_config.py::test_build_manifest_fail2 PASSED [ 96%] 180s tests/utils/sonata/test_config.py::test_output_dir PASSED [ 96%] 180s tests/utils/sonata/test_config.py::test_speical_vars PASSED [ 96%] 180s tests/utils/sonata/test_config.py::test_user_vars PASSED [ 96%] 180s tests/utils/sonata/test_config.py::test_node_set_file PASSED [ 97%] 180s tests/utils/sonata/test_config_validator.py::test_valid_config PASSED [ 97%] 180s tests/utils/sonata/test_config_validator.py::test_negative_tstop PASSED [ 97%] 180s tests/utils/sonata/test_config_validator.py::test_missing_nodes_file PASSED [ 98%] 180s tests/utils/sonata/test_config_validator.py::test_inputs PASSED [ 98%] 180s tests/utils/sonata/test_edge_stats.py::test_to_edges_dataframe PASSED [ 98%] 180s tests/utils/sonata/test_edge_stats.py::test_to_nodes_dataframe PASSED [ 98%] 181s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution PASSED [ 99%] 181s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution PASSED [ 99%] 181s tests/utils/sonata/test_edge_stats.py::test_nconnections_distributions PASSED [ 99%] 181s tests/utils/sonata/test_edge_stats.py::test_edge_stats_table PASSED [100%] 181s 181s =============================== warnings summary =============================== 181s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 181s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 181s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 181s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 181s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 181s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 181s /usr/lib/python3/dist-packages/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead. 181s i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill') 181s 181s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4] 181s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5] 181s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError 181s exp_df['max_tf'] = sub_df.idxmax(axis=1).values # sub_df.idxmax(axis=1) 181s 181s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 181s ================= 310 passed, 55 skipped, 8 warnings in 17.47s ================= 182s autopkgtest [00:20:52]: test run-unit-test: -----------------------] 182s autopkgtest [00:20:52]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 182s run-unit-test PASS 182s autopkgtest [00:20:52]: @@@@@@@@@@@@@@@@@@@@ summary 182s run-unit-test PASS 192s nova [W] Skipping flock for amd64 192s Creating nova instance adt-oracular-amd64-bmtk-20240608-001749-juju-7f2275-prod-proposed-migration-environment-2-e44d15d4-46b7-4cfb-8dcf-5f9c744abec7 from image adt/ubuntu-oracular-amd64-server-20240607.img (UUID d996b44c-1e10-4875-aeab-5b4c434d75a2)...