0s autopkgtest [15:29:39]: starting date and time: 2024-07-08 15:29:39+0000 0s autopkgtest [15:29:39]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [15:29:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.95ktgfxk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mpi-defaults --apt-upgrade abinit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mpi-defaults/1.17 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-101.secgroup --name adt-oracular-amd64-abinit-20240708-152939-juju-7f2275-prod-proposed-migration-environment-2-d9cf06ef-ab09-4ce7-9776-64846e9710a0 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 218s autopkgtest [15:33:17]: testbed dpkg architecture: amd64 220s autopkgtest [15:33:19]: testbed apt version: 2.9.6 220s autopkgtest [15:33:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 274s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 274s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB] 274s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3336 B] 274s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 274s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [360 kB] 274s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [107 kB] 274s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [78.4 kB] 274s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2592 B] 274s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 274s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 274s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 274s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [219 kB] 274s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [381 kB] 274s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9628 B] 274s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B] 274s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 274s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 276s Fetched 1398 kB in 0s (3567 kB/s) 276s Reading package lists... 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 303s Calculating upgrade... 303s The following packages will be upgraded: 303s libnetplan1 netplan-generator netplan.io python3-netplan 303s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 303s Need to get 274 kB of archives. 303s After this operation, 1024 B of additional disk space will be used. 303s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 netplan-generator amd64 1.0.1-1ubuntu2 [59.5 kB] 303s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-netplan amd64 1.0.1-1ubuntu2 [22.6 kB] 303s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 netplan.io amd64 1.0.1-1ubuntu2 [66.2 kB] 303s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libnetplan1 amd64 1.0.1-1ubuntu2 [125 kB] 303s Fetched 274 kB in 0s (3118 kB/s) 304s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74466 files and directories currently installed.) 304s Preparing to unpack .../netplan-generator_1.0.1-1ubuntu2_amd64.deb ... 304s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 304s Unpacking netplan-generator (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 304s Preparing to unpack .../python3-netplan_1.0.1-1ubuntu2_amd64.deb ... 304s Unpacking python3-netplan (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 304s Preparing to unpack .../netplan.io_1.0.1-1ubuntu2_amd64.deb ... 304s Unpacking netplan.io (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 304s Preparing to unpack .../libnetplan1_1.0.1-1ubuntu2_amd64.deb ... 304s Unpacking libnetplan1:amd64 (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 304s Setting up libnetplan1:amd64 (1.0.1-1ubuntu2) ... 304s Setting up python3-netplan (1.0.1-1ubuntu2) ... 304s Setting up netplan-generator (1.0.1-1ubuntu2) ... 304s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 304s Setting up netplan.io (1.0.1-1ubuntu2) ... 304s Processing triggers for libc-bin (2.39-0ubuntu9) ... 304s Processing triggers for man-db (2.12.1-2) ... 305s Processing triggers for dbus (1.14.10-4ubuntu4) ... 305s Reading package lists... 305s Building dependency tree... 305s Reading state information... 306s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 306s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 306s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 306s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 306s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 308s Reading package lists... 308s Reading package lists... 308s Building dependency tree... 308s Reading state information... 308s Calculating upgrade... 309s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 309s Reading package lists... 309s Building dependency tree... 309s Reading state information... 309s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 310s autopkgtest [15:34:49]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 310s autopkgtest [15:34:49]: @@@@@@@@@@@@@@@@@@@@ apt-source abinit 318s Get:1 http://ftpmaster.internal/ubuntu oracular/universe abinit 9.10.4-2ubuntu3 (dsc) [2571 B] 318s Get:2 http://ftpmaster.internal/ubuntu oracular/universe abinit 9.10.4-2ubuntu3 (tar) [131 MB] 318s Get:3 http://ftpmaster.internal/ubuntu oracular/universe abinit 9.10.4-2ubuntu3 (diff) [15.1 kB] 318s gpgv: Signature made Mon Apr 1 04:59:04 2024 UTC 318s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 318s gpgv: Can't check signature: No public key 318s dpkg-source: warning: cannot verify inline signature for ./abinit_9.10.4-2ubuntu3.dsc: no acceptable signature found 323s autopkgtest [15:35:02]: testing package abinit version 9.10.4-2ubuntu3 348s autopkgtest [15:35:27]: build not needed 422s autopkgtest [15:36:41]: test run-unit-test: preparing testbed 423s Reading package lists... 424s Building dependency tree... 424s Reading state information... 424s Starting pkgProblemResolver with broken count: 0 424s Starting 2 pkgProblemResolver with broken count: 0 424s Done 425s The following additional packages will be installed: 425s abinit abinit-data abinit-doc libaec0 libamd-comgr2 libamdhip64-5 libatomic1 425s libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 425s libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 libhsakmt1 425s libhwloc-plugins libhwloc15 liblapack3 libllvm17t64 libmunge2 libnetcdf19t64 425s libnetcdff7 libopenmpi3t64 libpciaccess0 libpmix2t64 libpsm-infinipath1 425s libpsm2-2 librdmacm1t64 libsz2 libucx0 libxc9 libxnvctrl0 mpi-default-bin 425s ocl-icd-libopencl1 openmpi-bin openmpi-common python3-dateutil python3-numpy 425s python3-pandas python3-pandas-lib 425s Suggested packages: 425s libhwloc-contrib-plugins opencl-icd gfortran | fortran-compiler gcc gfortran 425s python-numpy-doc python3-dev python3-pytest python-pandas-doc 425s python3-statsmodels 425s Recommended packages: 425s python3-scipy python3-matplotlib python3-bottleneck python3-numexpr 425s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 425s python3-tables python3-numba 425s The following NEW packages will be installed: 425s abinit abinit-data abinit-doc autopkgtest-satdep libaec0 libamd-comgr2 425s libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 425s libfabric1 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 425s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 liblapack3 425s libllvm17t64 libmunge2 libnetcdf19t64 libnetcdff7 libopenmpi3t64 425s libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libsz2 425s libucx0 libxc9 libxnvctrl0 mpi-default-bin ocl-icd-libopencl1 openmpi-bin 425s openmpi-common python3-dateutil python3-numpy python3-pandas 425s python3-pandas-lib 425s 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. 425s Need to get 148 MB/148 MB of archives. 425s After this operation, 662 MB of additional disk space will be used. 425s Get:1 /tmp/autopkgtest.r39Bjl/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [740 B] 425s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 425s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 425s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 425s Get:5 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 425s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 425s Get:7 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 425s Get:8 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 425s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6 [472 kB] 425s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnetcdff7 amd64 4.6.0+really4.5.4+ds-3build2 [140 kB] 425s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 425s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB] 425s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 425s Get:14 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 425s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 librdmacm1t64 amd64 52.0-2 [70.7 kB] 425s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfabric1 amd64 1.17.0-3build2 [657 kB] 425s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc15 amd64 2.10.0-1build1 [172 kB] 425s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 425s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 425s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 425s Get:21 http://ftpmaster.internal/ubuntu oracular/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 425s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc-plugins amd64 2.10.0-1build1 [15.7 kB] 425s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpmix2t64 amd64 5.0.1-4.1build1 [697 kB] 425s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-12 [26.2 MB] 425s Get:25 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 425s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [20.7 kB] 425s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 425s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 425s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamdhip64-5 amd64 5.7.1-4 [9526 kB] 425s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 libucx0 amd64 1.16.0+ds-5ubuntu1 [1140 kB] 425s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenmpi3t64 amd64 4.1.6-7ubuntu2 [2563 kB] 425s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxc9 amd64 5.2.3-1ubuntu1 [4007 kB] 425s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-common all 4.1.6-7ubuntu2 [170 kB] 425s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-bin amd64 4.1.6-7ubuntu2 [114 kB] 425s Get:35 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 mpi-default-bin amd64 1.17 [2296 B] 425s Get:36 http://ftpmaster.internal/ubuntu oracular/universe amd64 abinit amd64 9.10.4-2ubuntu3 [33.0 MB] 426s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 abinit-data all 9.10.4-2ubuntu3 [34.2 MB] 427s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 abinit-doc all 9.10.4-2ubuntu3 [2301 kB] 427s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 427s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 427s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB] 427s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 427s Fetched 148 MB in 2s (67.1 MB/s) 427s Selecting previously unselected package libblas3:amd64. 427s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74466 files and directories currently installed.) 427s Preparing to unpack .../00-libblas3_3.12.0-3build1_amd64.deb ... 427s Unpacking libblas3:amd64 (3.12.0-3build1) ... 427s Selecting previously unselected package libgfortran5:amd64. 427s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 427s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 427s Selecting previously unselected package liblapack3:amd64. 427s Preparing to unpack .../02-liblapack3_3.12.0-3build1_amd64.deb ... 427s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 427s Selecting previously unselected package libaec0:amd64. 427s Preparing to unpack .../03-libaec0_1.1.3-1_amd64.deb ... 427s Unpacking libaec0:amd64 (1.1.3-1) ... 427s Selecting previously unselected package libsz2:amd64. 428s Preparing to unpack .../04-libsz2_1.1.3-1_amd64.deb ... 428s Unpacking libsz2:amd64 (1.1.3-1) ... 428s Selecting previously unselected package libhdf5-103-1t64:amd64. 428s Preparing to unpack .../05-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 428s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 428s Selecting previously unselected package libhdf5-hl-100t64:amd64. 428s Preparing to unpack .../06-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 428s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 428s Selecting previously unselected package libnetcdf19t64:amd64. 428s Preparing to unpack .../07-libnetcdf19t64_1%3a4.9.2-6_amd64.deb ... 428s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6) ... 428s Selecting previously unselected package libnetcdff7:amd64. 428s Preparing to unpack .../08-libnetcdff7_4.6.0+really4.5.4+ds-3build2_amd64.deb ... 428s Unpacking libnetcdff7:amd64 (4.6.0+really4.5.4+ds-3build2) ... 428s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 428s Preparing to unpack .../09-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 428s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 428s Selecting previously unselected package libatomic1:amd64. 428s Preparing to unpack .../10-libatomic1_14.1.0-1ubuntu1_amd64.deb ... 428s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ... 428s Selecting previously unselected package libpsm-infinipath1. 428s Preparing to unpack .../11-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 428s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 428s Selecting previously unselected package libpsm2-2. 428s Preparing to unpack .../12-libpsm2-2_11.2.185-2.1_amd64.deb ... 428s Unpacking libpsm2-2 (11.2.185-2.1) ... 428s Selecting previously unselected package librdmacm1t64:amd64. 428s Preparing to unpack .../13-librdmacm1t64_52.0-2_amd64.deb ... 428s Unpacking librdmacm1t64:amd64 (52.0-2) ... 428s Selecting previously unselected package libfabric1:amd64. 428s Preparing to unpack .../14-libfabric1_1.17.0-3build2_amd64.deb ... 428s Unpacking libfabric1:amd64 (1.17.0-3build2) ... 428s Selecting previously unselected package libhwloc15:amd64. 428s Preparing to unpack .../15-libhwloc15_2.10.0-1build1_amd64.deb ... 428s Unpacking libhwloc15:amd64 (2.10.0-1build1) ... 428s Selecting previously unselected package libmunge2:amd64. 428s Preparing to unpack .../16-libmunge2_0.5.15-4build1_amd64.deb ... 428s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 428s Selecting previously unselected package libpciaccess0:amd64. 428s Preparing to unpack .../17-libpciaccess0_0.17-3build1_amd64.deb ... 428s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 428s Selecting previously unselected package libxnvctrl0:amd64. 428s Preparing to unpack .../18-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 428s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 428s Selecting previously unselected package ocl-icd-libopencl1:amd64. 428s Preparing to unpack .../19-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 428s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 428s Selecting previously unselected package libhwloc-plugins:amd64. 428s Preparing to unpack .../20-libhwloc-plugins_2.10.0-1build1_amd64.deb ... 428s Unpacking libhwloc-plugins:amd64 (2.10.0-1build1) ... 428s Selecting previously unselected package libpmix2t64:amd64. 428s Preparing to unpack .../21-libpmix2t64_5.0.1-4.1build1_amd64.deb ... 428s Unpacking libpmix2t64:amd64 (5.0.1-4.1build1) ... 428s Selecting previously unselected package libllvm17t64:amd64. 428s Preparing to unpack .../22-libllvm17t64_1%3a17.0.6-12_amd64.deb ... 428s Unpacking libllvm17t64:amd64 (1:17.0.6-12) ... 429s Selecting previously unselected package libamd-comgr2:amd64. 429s Preparing to unpack .../23-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 429s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 429s Selecting previously unselected package libdrm-amdgpu1:amd64. 429s Preparing to unpack .../24-libdrm-amdgpu1_2.4.121-2_amd64.deb ... 429s Unpacking libdrm-amdgpu1:amd64 (2.4.121-2) ... 429s Selecting previously unselected package libhsakmt1:amd64. 429s Preparing to unpack .../25-libhsakmt1_5.7.0-1build1_amd64.deb ... 429s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 429s Selecting previously unselected package libhsa-runtime64-1. 429s Preparing to unpack .../26-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 429s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 429s Selecting previously unselected package libamdhip64-5. 429s Preparing to unpack .../27-libamdhip64-5_5.7.1-4_amd64.deb ... 429s Unpacking libamdhip64-5 (5.7.1-4) ... 429s Selecting previously unselected package libucx0:amd64. 429s Preparing to unpack .../28-libucx0_1.16.0+ds-5ubuntu1_amd64.deb ... 429s Unpacking libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 429s Selecting previously unselected package libopenmpi3t64:amd64. 429s Preparing to unpack .../29-libopenmpi3t64_4.1.6-7ubuntu2_amd64.deb ... 429s Unpacking libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 429s Selecting previously unselected package libxc9:amd64. 429s Preparing to unpack .../30-libxc9_5.2.3-1ubuntu1_amd64.deb ... 429s Unpacking libxc9:amd64 (5.2.3-1ubuntu1) ... 429s Selecting previously unselected package openmpi-common. 429s Preparing to unpack .../31-openmpi-common_4.1.6-7ubuntu2_all.deb ... 429s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 429s Selecting previously unselected package openmpi-bin. 429s Preparing to unpack .../32-openmpi-bin_4.1.6-7ubuntu2_amd64.deb ... 429s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 430s Selecting previously unselected package mpi-default-bin. 430s Preparing to unpack .../33-mpi-default-bin_1.17_amd64.deb ... 430s Unpacking mpi-default-bin (1.17) ... 430s Selecting previously unselected package abinit. 430s Preparing to unpack .../34-abinit_9.10.4-2ubuntu3_amd64.deb ... 430s Unpacking abinit (9.10.4-2ubuntu3) ... 430s Selecting previously unselected package abinit-data. 430s Preparing to unpack .../35-abinit-data_9.10.4-2ubuntu3_all.deb ... 430s Unpacking abinit-data (9.10.4-2ubuntu3) ... 431s Selecting previously unselected package abinit-doc. 431s Preparing to unpack .../36-abinit-doc_9.10.4-2ubuntu3_all.deb ... 431s Unpacking abinit-doc (9.10.4-2ubuntu3) ... 431s Selecting previously unselected package python3-dateutil. 431s Preparing to unpack .../37-python3-dateutil_2.9.0-2_all.deb ... 431s Unpacking python3-dateutil (2.9.0-2) ... 431s Selecting previously unselected package python3-numpy. 431s Preparing to unpack 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Setting up libblas3:amd64 (3.12.0-3build1) ... 432s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 432s Setting up libmunge2:amd64 (0.5.15-4build1) ... 432s Setting up libllvm17t64:amd64 (1:17.0.6-12) ... 432s Setting up libhwloc15:amd64 (2.10.0-1build1) ... 432s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ... 432s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 432s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 432s Setting up libpsm2-2 (11.2.185-2.1) ... 432s Setting up openmpi-common (4.1.6-7ubuntu2) ... 432s Setting up librdmacm1t64:amd64 (52.0-2) ... 432s Setting up python3-dateutil (2.9.0-2) ... 432s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 432s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 432s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide 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Setting up python3-pandas (2.1.4+dfsg-8) ... 439s Setting up libnetcdff7:amd64 (4.6.0+really4.5.4+ds-3build2) ... 439s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 439s Setting up libamdhip64-5 (5.7.1-4) ... 439s Setting up libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 439s Setting up libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 439s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 439s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 439s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 439s Setting up mpi-default-bin (1.17) ... 439s Setting up abinit (9.10.4-2ubuntu3) ... 439s Setting up autopkgtest-satdep (0) ... 439s Processing triggers for man-db (2.12.1-2) ... 440s Processing triggers for libc-bin (2.39-0ubuntu9) ... 452s (Reading database ... 78743 files and directories currently installed.) 452s Removing autopkgtest-satdep (0) ... 452s autopkgtest [15:37:11]: test run-unit-test: [----------------------- 453s /tmp/autopkgtest.r39Bjl/build.e3w/src/tests/__init__.py:231: SyntaxWarning: invalid escape sequence '\d' 453s pattern = re.compile("-?t" + name + "_\d+\.abi") 453s /tmp/autopkgtest.r39Bjl/build.e3w/src/tests/__init__.py:722: SyntaxWarning: invalid escape sequence '\[' 453s re_slice = re.compile("^\[(\d*):(\d*)\]$") 453s /tmp/autopkgtest.r39Bjl/build.e3w/src/tests/__init__.py:723: SyntaxWarning: invalid escape sequence '\[' 453s re_single = re.compile("^\[(\d*)\]$") 453s /tmp/autopkgtest.r39Bjl/build.e3w/src/tests/pymods/xyaptu.py:37: SyntaxWarning: invalid escape sequence '\+' 453s _reOpen = re.compile('\++yaptu ') 453s /tmp/autopkgtest.r39Bjl/build.e3w/src/tests/pymods/yaptu.py:96: SyntaxWarning: invalid escape sequence '\+' 453s rbe=re.compile('\+') 453s stty: 'standard input': Inappropriate ioctl for device 488s Running on autopkgtest -- system Linux -- ncpus 2 -- Python 3.12.4 -- runtests.py-0.6.0 488s Regenerating database... 488s Saving database to /tmp/autopkgtest.r39Bjl/build.e3w/src/tests/test_suite.cpkl 488s /tmp/tmp.fBqMOtzVJC directory already exists. Files will be removed 488s Running 26 test(s) with MPI_procs: 1, py_nprocs: 1 488s [fast][t00][np=1][run_etime: 1.20 s]: succeeded [file=t00.abo] 488s [fast][t01][np=1][run_etime: 0.54 s]: succeeded [file=t01.abo] 488s [fast][t02][np=1][run_etime: 1.11 s]: succeeded [file=t02.abo] 488s [fast][t03][np=1][run_etime: 0.94 s]: succeeded [file=t03.abo] 488s [fast][t05][np=1][run_etime: 0.87 s]: succeeded [file=t05.abo] 488s [fast][t06][np=1][run_etime: 0.74 s]: succeeded [file=t06.abo] 488s [fast][t07][np=1][run_etime: 0.82 s]: succeeded [file=t07.abo] 488s [fast][t08][np=1][run_etime: 0.74 s]: succeeded [file=t08.abo] 488s [fast][t09][np=1][run_etime: 0.69 s]: succeeded [file=t09.abo] 488s [fast][t11][np=1][run_etime: 0.77 s]: succeeded [file=t11.abo] 488s [fast][t12][np=1][run_etime: 0.69 s]: succeeded [file=t12.abo] 488s [fast][t14][np=1][run_etime: 0.73 s]: passed: abs error 9.999e-07 < 1.1e-06, rel error 0.0003729 < 0.0004 [file=t14.abo] 488s [fast][t16][np=1][run_etime: 0.72 s]: succeeded [file=t16.abo] 488s [fast][t04][np=1][run_etime: 0.90 s]: succeeded [file=t04.abo] 488s [fast][t17][np=1][run_etime: 0.85 s]: succeeded [file=t17.abo] 488s [fast][t19][np=1][run_etime: 0.89 s]: succeeded [file=t19.abo] 488s [fast][t20][np=1][run_etime: 1.77 s]: succeeded [file=t20.abo] 488s [fast][t21][np=1][run_etime: 3.79 s]: succeeded [file=t21.abo] 488s [fast][t23][np=1][run_etime: 1.02 s]: succeeded [file=t23.abo] 488s [fast][t24][np=1][run_etime: 1.44 s]: succeeded [file=t24.abo] 488s [fast][t25][np=1][run_etime: 1.21 s]: passed: abs error 5.705e-09 < 7e-09, rel error 2.178e-10 < 3e-10 [file=t25.abo] 488s [fast][t26][np=1][run_etime: 1.19 s]: succeeded [file=t26.abo] 488s [fast][t27][np=1][run_etime: 1.34 s]: succeeded [file=t27.abo] 488s [fast][t28][np=1][run_etime: 2.21 s]: succeeded [file=t28.abo] 488s [fast][t28][np=1][run_etime: 2.21 s]: succeeded [file=t28o_TIM2_GEO] 488s [fast][t29][np=1][run_etime: 5.53 s]: succeeded [file=t29.abo] 488s [fast][t29][np=1][run_etime: 5.53 s]: succeeded [file=t29o_TIM8_GEO] 488s [fast][t30][np=1][run_etime: 0.89 s]: succeeded [file=t30.abo] 488s 488s Suite failed passed succeeded skipped disabled run_etime tot_etime 488s fast 0 2 9 0 0 33.59 33.82 488s 488s Completed in 34.11 [s]. Average time for test=3.05 [s], stdev=3.28 [s] 488s Summary: failed=0, succeeded=9, passed=2, skipped=0, disabled=0 488s 488s Execution completed. 488s Results in HTML format are available in /tmp/tmp.fBqMOtzVJC/suite_report.html 488s autopkgtest [15:37:47]: test run-unit-test: -----------------------] 489s run-unit-test PASS 489s autopkgtest [15:37:48]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 489s autopkgtest [15:37:48]: @@@@@@@@@@@@@@@@@@@@ summary 489s run-unit-test PASS 553s nova [W] Skipping flock for amd64 553s Creating nova instance adt-oracular-amd64-abinit-20240708-152939-juju-7f2275-prod-proposed-migration-environment-2-d9cf06ef-ab09-4ce7-9776-64846e9710a0 from image adt/ubuntu-oracular-amd64-server-20240708.img (UUID a0fb9aef-f002-4c41-8539-53542ad6f0d4)...