0s autopkgtest [21:38:06]: starting date and time: 2024-03-25 21:38:06+0000 0s autopkgtest [21:38:06]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [21:38:06]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6i4sbeeh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:vt,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade vt --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=vt/0.57721+ds-3build1 curl/8.5.0-2ubuntu8 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-12.secgroup --name adt-noble-s390x-vt-20240325-213806-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 81s autopkgtest [21:39:27]: testbed dpkg architecture: s390x 81s autopkgtest [21:39:27]: testbed apt version: 2.7.12 81s autopkgtest [21:39:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 83s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 83s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB] 83s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [7608 B] 83s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4038 kB] 85s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 85s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [692 kB] 85s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 85s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 85s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 85s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4136 kB] 86s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 86s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [47.8 kB] 86s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 88s Fetched 9603 kB in 5s (2050 kB/s) 88s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Calculating upgrade... 91s The following packages will be REMOVED: 91s libssl3 91s The following NEW packages will be installed: 91s libssl3t64 91s The following packages have been kept back: 91s curl 91s The following packages will be upgraded: 91s openssl 92s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 92s Need to get 2685 kB of archives. 92s After this operation, 239 kB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 92s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 93s Fetched 2685 kB in 1s (2586 kB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 93s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 93s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 93s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 93s wget depends on libssl3 (>= 3.0.0). 93s tnftp depends on libssl3 (>= 3.0.0). 93s tcpdump depends on libssl3 (>= 3.0.0). 93s systemd-resolved depends on libssl3 (>= 3.0.0). 93s systemd depends on libssl3 (>= 3.0.0). 93s sudo depends on libssl3 (>= 3.0.0). 93s s390-tools depends on libssl3 (>= 3.0.0). 93s rsync depends on libssl3 (>= 3.0.0). 93s python3-cryptography depends on libssl3 (>= 3.0.0). 93s openssh-server depends on libssl3 (>= 3.0.10). 93s openssh-client depends on libssl3 (>= 3.0.10). 93s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 93s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 93s libssh-4:s390x depends on libssl3 (>= 3.0.0). 93s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 93s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 93s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 93s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 93s libnvme1 depends on libssl3 (>= 3.0.0). 93s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 93s libkmod2:s390x depends on libssl3 (>= 3.0.0). 93s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 93s libcurl4:s390x depends on libssl3 (>= 3.0.0). 93s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 93s kmod depends on libssl3 (>= 3.0.0). 93s dhcpcd-base depends on libssl3 (>= 3.0.0). 93s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 93s 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 93s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 93s Selecting previously unselected package libssl3t64:s390x. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 93s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 93s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 93s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 93s Setting up openssl (3.0.13-0ubuntu2) ... 93s Processing triggers for man-db (2.12.0-3) ... 94s Processing triggers for libc-bin (2.39-0ubuntu6) ... 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 95s Unknown architecture, assuming PC-style ttyS0 95s sh: Attempting to set up Debian/Ubuntu apt sources automatically 95s sh: Distribution appears to be Ubuntu 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s eatmydata is already the newest version (131-1). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s dbus is already the newest version (1.14.10-4ubuntu1). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s rng-tools-debian is already the newest version (2.4). 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s The following packages will be REMOVED: 97s cloud-init* python3-configobj* python3-debconf* 98s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 98s After this operation, 3256 kB disk space will be freed. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 98s Removing cloud-init (24.1.2-0ubuntu1) ... 98s Removing python3-configobj (5.0.8-3) ... 98s Removing python3-debconf (1.5.86) ... 98s Processing triggers for man-db (2.12.0-3) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 99s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 99s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 99s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 99s invoke-rc.d: policy-rc.d denied execution of try-restart. 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s linux-generic is already the newest version (6.8.0-11.11+1). 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 100s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 100s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 102s Reading package lists... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s Calculating upgrade... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s autopkgtest [21:39:49]: rebooting testbed after setup commands that affected boot 120s autopkgtest [21:40:06]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 123s autopkgtest [21:40:09]: @@@@@@@@@@@@@@@@@@@@ apt-source vt 128s Get:1 http://ftpmaster.internal/ubuntu noble/universe vt 0.57721+ds-3 (dsc) [2162 B] 128s Get:2 http://ftpmaster.internal/ubuntu noble/universe vt 0.57721+ds-3 (tar) [18.6 MB] 128s Get:3 http://ftpmaster.internal/ubuntu noble/universe vt 0.57721+ds-3 (diff) [8092 B] 128s gpgv: Signature made Tue Nov 10 16:13:34 2020 UTC 128s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 128s gpgv: issuer "tille@debian.org" 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./vt_0.57721+ds-3.dsc: no acceptable signature found 128s autopkgtest [21:40:14]: testing package vt version 0.57721+ds-3 129s autopkgtest [21:40:15]: build not needed 130s autopkgtest [21:40:16]: test basic: preparing testbed 133s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s Starting pkgProblemResolver with broken count: 0 134s Starting 2 pkgProblemResolver with broken count: 0 134s Done 134s The following additional packages will be installed: 134s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 134s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 134s libgomp1 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libjbig0 134s libjpeg-turbo8 libjpeg8 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 134s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 134s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 134s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 r-base-core unzip vt 134s vt-examples x11-common xdg-utils zip 134s Suggested packages: 134s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 134s Recommended packages: 134s r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl 134s libx11-protocol-perl x11-utils x11-xserver-utils 134s The following NEW packages will be installed: 134s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 134s fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 134s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3 134s libhtscodecs2 libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 134s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 134s libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 134s libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 134s libxss1 libxt6 r-base-core unzip vt vt-examples x11-common xdg-utils zip 134s 0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded. 134s Need to get 58.0 MB/58.0 MB of archives. 134s After this operation, 100 MB of additional disk space will be used. 134s Get:1 /tmp/autopkgtest.Ywq3RQ/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B] 134s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 135s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 135s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 135s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 135s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 135s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 136s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 136s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 136s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 136s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 136s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 136s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 136s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 136s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 136s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 136s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 136s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 136s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 136s Get:20 http://ftpmaster.internal/ubuntu noble/universe s390x libhtscodecs2 s390x 1.6.0-1 [87.2 kB] 136s Get:21 http://ftpmaster.internal/ubuntu noble/universe s390x libhts3 s390x 1.18+ds-1 [463 kB] 136s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 136s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 136s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 136s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 136s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 137s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 137s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 137s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 137s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 137s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 137s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 137s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 137s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 137s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 137s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 137s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 137s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 137s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 137s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 137s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 137s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.14-1 [833 kB] 137s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 137s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 137s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 137s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 137s Get:47 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 140s Get:48 http://ftpmaster.internal/ubuntu noble/universe s390x vt s390x 0.57721+ds-3 [739 kB] 140s Get:49 http://ftpmaster.internal/ubuntu noble/universe s390x vt-examples all 0.57721+ds-3 [18.4 MB] 141s Preconfiguring packages ... 141s Fetched 58.0 MB in 7s (8881 kB/s) 141s Selecting previously unselected package libfreetype6:s390x. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51728 files and directories currently installed.) 141s Preparing to unpack .../00-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 141s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 141s Selecting previously unselected package fonts-dejavu-mono. 141s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 141s Unpacking fonts-dejavu-mono (2.37-8) ... 141s Selecting previously unselected package fonts-dejavu-core. 141s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 141s Unpacking fonts-dejavu-core (2.37-8) ... 141s Selecting previously unselected package fontconfig-config. 141s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 142s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 142s Selecting previously unselected package libfontconfig1:s390x. 142s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 142s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 142s Selecting previously unselected package fontconfig. 142s Preparing to unpack .../05-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 142s Unpacking fontconfig (2.15.0-1ubuntu1) ... 142s Selecting previously unselected package libblas3:s390x. 142s Preparing to unpack .../06-libblas3_3.12.0-3_s390x.deb ... 142s Unpacking libblas3:s390x (3.12.0-3) ... 142s Selecting previously unselected package libpixman-1-0:s390x. 142s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_s390x.deb ... 142s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 142s Selecting previously unselected package libxcb-render0:s390x. 142s Preparing to unpack .../08-libxcb-render0_1.15-1_s390x.deb ... 142s Unpacking libxcb-render0:s390x (1.15-1) ... 142s Selecting previously unselected package libxcb-shm0:s390x. 142s Preparing to unpack .../09-libxcb-shm0_1.15-1_s390x.deb ... 142s Unpacking libxcb-shm0:s390x (1.15-1) ... 142s Selecting previously unselected package libxrender1:s390x. 142s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 142s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 142s Selecting previously unselected package libcairo2:s390x. 142s Preparing to unpack .../11-libcairo2_1.18.0-1_s390x.deb ... 142s Unpacking libcairo2:s390x (1.18.0-1) ... 142s Selecting previously unselected package libdatrie1:s390x. 142s Preparing to unpack .../12-libdatrie1_0.2.13-3_s390x.deb ... 142s Unpacking libdatrie1:s390x (0.2.13-3) ... 142s Selecting previously unselected package libdeflate0:s390x. 142s Preparing to unpack .../13-libdeflate0_1.19-1_s390x.deb ... 142s Unpacking libdeflate0:s390x (1.19-1) ... 142s Selecting previously unselected package libgfortran5:s390x. 142s Preparing to unpack .../14-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 142s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 142s Selecting previously unselected package libgomp1:s390x. 142s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 142s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 142s Selecting previously unselected package libgraphite2-3:s390x. 142s Preparing to unpack .../16-libgraphite2-3_1.3.14-2_s390x.deb ... 142s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 142s Selecting previously unselected package libharfbuzz0b:s390x. 142s Preparing to unpack .../17-libharfbuzz0b_8.3.0-2_s390x.deb ... 142s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 142s Selecting previously unselected package libhtscodecs2:s390x. 142s Preparing to unpack .../18-libhtscodecs2_1.6.0-1_s390x.deb ... 142s Unpacking libhtscodecs2:s390x (1.6.0-1) ... 142s Selecting previously unselected package libhts3:s390x. 142s Preparing to unpack .../19-libhts3_1.18+ds-1_s390x.deb ... 142s Unpacking libhts3:s390x (1.18+ds-1) ... 142s Selecting previously unselected package x11-common. 142s Preparing to unpack .../20-x11-common_1%3a7.7+23ubuntu2_all.deb ... 142s Unpacking x11-common (1:7.7+23ubuntu2) ... 142s Selecting previously unselected package libice6:s390x. 142s Preparing to unpack .../21-libice6_2%3a1.0.10-1build2_s390x.deb ... 142s Unpacking libice6:s390x (2:1.0.10-1build2) ... 142s Selecting previously unselected package libjpeg-turbo8:s390x. 142s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 142s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 142s Selecting previously unselected package libjpeg8:s390x. 142s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_s390x.deb ... 142s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 142s Selecting previously unselected package liblapack3:s390x. 142s Preparing to unpack .../24-liblapack3_3.12.0-3_s390x.deb ... 142s Unpacking liblapack3:s390x (3.12.0-3) ... 142s Selecting previously unselected package libthai-data. 142s Preparing to unpack .../25-libthai-data_0.1.29-2_all.deb ... 142s Unpacking libthai-data (0.1.29-2) ... 142s Selecting previously unselected package libthai0:s390x. 142s Preparing to unpack .../26-libthai0_0.1.29-2_s390x.deb ... 142s Unpacking libthai0:s390x (0.1.29-2) ... 142s Selecting previously unselected package libpango-1.0-0:s390x. 142s Preparing to unpack .../27-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 142s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 142s Selecting previously unselected package libpangoft2-1.0-0:s390x. 142s Preparing to unpack .../28-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 142s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 142s Selecting previously unselected package libpangocairo-1.0-0:s390x. 142s Preparing to unpack .../29-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 142s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 142s Selecting previously unselected package libpaper1:s390x. 142s Preparing to unpack .../30-libpaper1_1.1.29_s390x.deb ... 142s Unpacking libpaper1:s390x (1.1.29) ... 142s Selecting previously unselected package libpaper-utils. 142s Preparing to unpack .../31-libpaper-utils_1.1.29_s390x.deb ... 142s Unpacking libpaper-utils (1.1.29) ... 142s Selecting previously unselected package libsharpyuv0:s390x. 142s Preparing to unpack .../32-libsharpyuv0_1.3.2-0.4_s390x.deb ... 142s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 142s Selecting previously unselected package libsm6:s390x. 142s Preparing to unpack .../33-libsm6_2%3a1.2.3-1build2_s390x.deb ... 142s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 142s Selecting previously unselected package libtcl8.6:s390x. 142s Preparing to unpack .../34-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 142s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 142s Selecting previously unselected package libjbig0:s390x. 142s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 142s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 142s Selecting previously unselected package libwebp7:s390x. 142s Preparing to unpack .../36-libwebp7_1.3.2-0.4_s390x.deb ... 142s Unpacking libwebp7:s390x (1.3.2-0.4) ... 142s Selecting previously unselected package libtiff6:s390x. 142s Preparing to unpack .../37-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 142s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 142s Selecting previously unselected package libxft2:s390x. 142s Preparing to unpack .../38-libxft2_2.3.6-1_s390x.deb ... 142s Unpacking libxft2:s390x (2.3.6-1) ... 142s Selecting previously unselected package libxss1:s390x. 142s Preparing to unpack .../39-libxss1_1%3a1.2.3-1build2_s390x.deb ... 142s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 142s Selecting previously unselected package libtk8.6:s390x. 142s Preparing to unpack .../40-libtk8.6_8.6.14-1_s390x.deb ... 142s Unpacking libtk8.6:s390x (8.6.14-1) ... 142s Selecting previously unselected package libxt6:s390x. 142s Preparing to unpack .../41-libxt6_1%3a1.2.1-1.1_s390x.deb ... 142s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 142s Selecting previously unselected package zip. 142s Preparing to unpack .../42-zip_3.0-13_s390x.deb ... 142s Unpacking zip (3.0-13) ... 142s Selecting previously unselected package unzip. 142s Preparing to unpack .../43-unzip_6.0-28ubuntu3_s390x.deb ... 142s Unpacking unzip (6.0-28ubuntu3) ... 142s Selecting previously unselected package xdg-utils. 142s Preparing to unpack .../44-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 142s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 142s Selecting previously unselected package r-base-core. 142s Preparing to unpack .../45-r-base-core_4.3.2-1build1_s390x.deb ... 142s Unpacking r-base-core (4.3.2-1build1) ... 143s Selecting previously unselected package vt. 143s Preparing to unpack .../46-vt_0.57721+ds-3_s390x.deb ... 143s Unpacking vt (0.57721+ds-3) ... 143s Selecting previously unselected package vt-examples. 143s Preparing to unpack .../47-vt-examples_0.57721+ds-3_all.deb ... 143s Unpacking vt-examples (0.57721+ds-3) ... 143s Selecting previously unselected package autopkgtest-satdep. 143s Preparing to unpack .../48-1-autopkgtest-satdep.deb ... 143s Unpacking autopkgtest-satdep (0) ... 143s Setting up libhtscodecs2:s390x (1.6.0-1) ... 143s Setting up libgraphite2-3:s390x (1.3.14-2) ... 143s Setting up libpixman-1-0:s390x (0.42.2-1) ... 143s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 143s Setting up libpaper1:s390x (1.1.29) ... 143s 143s Creating config file /etc/papersize with new version 143s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 143s Setting up libdatrie1:s390x (0.2.13-3) ... 143s Setting up libxcb-render0:s390x (1.15-1) ... 143s Setting up unzip (6.0-28ubuntu3) ... 143s Setting up x11-common (1:7.7+23ubuntu2) ... 144s Setting up libdeflate0:s390x (1.19-1) ... 144s Setting up libxcb-shm0:s390x (1.15-1) ... 144s Setting up libpaper-utils (1.1.29) ... 144s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 144s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 144s Setting up zip (3.0-13) ... 144s Setting up libblas3:s390x (3.12.0-3) ... 144s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 144s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 144s Setting up fonts-dejavu-mono (2.37-8) ... 144s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 144s Setting up fonts-dejavu-core (2.37-8) ... 144s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 144s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 144s Setting up libwebp7:s390x (1.3.2-0.4) ... 144s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 144s Setting up libthai-data (0.1.29-2) ... 144s Setting up vt-examples (0.57721+ds-3) ... 144s Setting up libxss1:s390x (1:1.2.3-1build2) ... 144s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 144s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 144s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 144s Setting up libice6:s390x (2:1.0.10-1build2) ... 144s Setting up liblapack3:s390x (3.12.0-3) ... 144s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 144s Setting up libhts3:s390x (1.18+ds-1) ... 144s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 144s Setting up libthai0:s390x (0.1.29-2) ... 144s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 144s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 144s Setting up libsm6:s390x (2:1.2.3-1build2) ... 144s Setting up fontconfig (2.15.0-1ubuntu1) ... 146s Regenerating fonts cache... done. 146s Setting up libxft2:s390x (2.3.6-1) ... 146s Setting up libtk8.6:s390x (8.6.14-1) ... 146s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ... 146s Setting up libcairo2:s390x (1.18.0-1) ... 146s Setting up libxt6:s390x (1:1.2.1-1.1) ... 146s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 146s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 146s Setting up r-base-core (4.3.2-1build1) ... 146s 146s Creating config file /etc/R/Renviron with new version 146s Setting up vt (0.57721+ds-3) ... 146s Setting up autopkgtest-satdep (0) ... 146s Processing triggers for man-db (2.12.0-3) ... 147s Processing triggers for install-info (7.1-3) ... 147s Processing triggers for libc-bin (2.39-0ubuntu6) ... 151s (Reading database ... 53772 files and directories currently installed.) 151s Removing autopkgtest-satdep (0) ... 151s autopkgtest [21:40:37]: test basic: [----------------------- 151s Help page on http://statgen.sph.umich.edu/wiki/Vt 152s autopkgtest [21:40:38]: test basic: -----------------------] 152s autopkgtest [21:40:38]: test basic: - - - - - - - - - - results - - - - - - - - - - 152s basic PASS 153s autopkgtest [21:40:39]: test run-unit-test: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Starting pkgProblemResolver with broken count: 0 155s Starting 2 pkgProblemResolver with broken count: 0 155s Done 155s The following NEW packages will be installed: 155s autopkgtest-satdep 155s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 155s Need to get 0 B/712 B of archives. 155s After this operation, 0 B of additional disk space will be used. 155s Get:1 /tmp/autopkgtest.Ywq3RQ/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [712 B] 156s Selecting previously unselected package autopkgtest-satdep. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53772 files and directories currently installed.) 156s Preparing to unpack .../2-autopkgtest-satdep.deb ... 156s Unpacking autopkgtest-satdep (0) ... 156s Setting up autopkgtest-satdep (0) ... 158s (Reading database ... 53772 files and directories currently installed.) 158s Removing autopkgtest-satdep (0) ... 158s autopkgtest [21:40:44]: test run-unit-test: [----------------------- 159s ++++++++++++++++++++++ 159s Tests for vt normalize 159s ++++++++++++++++++++++ 159s testing normalize 159s output VCF file : ok 159s +++++++++++++++++++++++++++++++ 159s Tests for vt decompose_blocksub 159s +++++++++++++++++++++++++++++++ 159s output logs : ok 159s testing decompose_blocksub of even-length blocks 159s output VCF file : ok 159s output logs : ok 159s testing decompose_blocksub with alignment 159s output VCF file : ok 159s output logs : ok 159s testing decompose_blocksub of phased even-length blocks 159s output VCF file : ok 159s output logs : ok 159s ++++++++++++++++++++++ 159s Tests for vt decompose 159s ++++++++++++++++++++++ 159s testing decompose for a triallelic variant 159s output VCF file : ok 159s output logs : ok 159s 159s Passed tests : 5 / 5 159s autopkgtest [21:40:45]: test run-unit-test: -----------------------] 160s autopkgtest [21:40:46]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 160s run-unit-test PASS 160s autopkgtest [21:40:46]: @@@@@@@@@@@@@@@@@@@@ summary 160s basic PASS 160s run-unit-test PASS 180s Creating nova instance adt-noble-s390x-vt-20240325-213806-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240325.img (UUID 9f25d9bc-613c-4979-9452-2ea8e4d84cd0)...