0s autopkgtest [09:32:38]: starting date and time: 2024-03-23 09:32:38+0000 0s autopkgtest [09:32:38]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [09:32:38]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.872nok0r/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade snpomatic --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-20.secgroup --name adt-noble-s390x-snpomatic-20240323-093238-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 81s autopkgtest [09:33:59]: testbed dpkg architecture: s390x 81s autopkgtest [09:33:59]: testbed apt version: 2.7.12 81s autopkgtest [09:33:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 82s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 82s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 82s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 82s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4029 kB] 84s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [651 kB] 84s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 84s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 84s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 84s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4144 kB] 84s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 84s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 84s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 86s Fetched 9558 kB in 3s (2739 kB/s) 86s Reading package lists... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Calculating upgrade... 89s The following packages will be REMOVED: 89s libssl3 89s The following NEW packages will be installed: 89s libssl3t64 89s The following packages have been kept back: 89s curl 89s The following packages will be upgraded: 89s libbsd0 libc-bin libc6 locales openssl 90s 5 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 90s Need to get 10.5 MB of archives. 90s After this operation, 241 kB of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu6 [2847 kB] 90s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu6 [654 kB] 90s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 90s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 90s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 90s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x locales all 2.39-0ubuntu6 [4232 kB] 91s Preconfiguring packages ... 91s Fetched 10.5 MB in 1s (10.6 MB/s) 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 91s Preparing to unpack .../libc6_2.39-0ubuntu6_s390x.deb ... 91s Unpacking libc6:s390x (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 91s Setting up libc6:s390x (2.39-0ubuntu6) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 92s Preparing to unpack .../libc-bin_2.39-0ubuntu6_s390x.deb ... 92s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 92s Setting up libc-bin (2.39-0ubuntu6) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 92s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 92s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 92s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 92s wget depends on libssl3 (>= 3.0.0). 92s tnftp depends on libssl3 (>= 3.0.0). 92s tcpdump depends on libssl3 (>= 3.0.0). 92s systemd-resolved depends on libssl3 (>= 3.0.0). 92s systemd depends on libssl3 (>= 3.0.0). 92s sudo depends on libssl3 (>= 3.0.0). 92s s390-tools depends on libssl3 (>= 3.0.0). 92s rsync depends on libssl3 (>= 3.0.0). 92s python3-cryptography depends on libssl3 (>= 3.0.0). 92s openssh-server depends on libssl3 (>= 3.0.10). 92s openssh-client depends on libssl3 (>= 3.0.10). 92s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 92s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 92s libssh-4:s390x depends on libssl3 (>= 3.0.0). 92s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 92s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 92s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 92s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 92s libnvme1 depends on libssl3 (>= 3.0.0). 92s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 92s libkmod2:s390x depends on libssl3 (>= 3.0.0). 92s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 92s libcurl4:s390x depends on libssl3 (>= 3.0.0). 92s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 92s kmod depends on libssl3 (>= 3.0.0). 92s dhcpcd-base depends on libssl3 (>= 3.0.0). 92s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 92s 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 92s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 92s Selecting previously unselected package libssl3t64:s390x. 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 92s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 92s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 92s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 92s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 92s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 92s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 92s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 92s Setting up locales (2.39-0ubuntu6) ... 93s Generating locales (this might take a while)... 94s en_US.UTF-8... done 94s Generation complete. 94s Setting up openssl (3.0.13-0ubuntu2) ... 94s Setting up libbsd0:s390x (0.12.1-1) ... 94s Processing triggers for man-db (2.12.0-3) ... 95s Processing triggers for libc-bin (2.39-0ubuntu6) ... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 96s Unknown architecture, assuming PC-style ttyS0 96s sh: Attempting to set up Debian/Ubuntu apt sources automatically 96s sh: Distribution appears to be Ubuntu 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s eatmydata is already the newest version (131-1). 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s dbus is already the newest version (1.14.10-4ubuntu1). 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s rng-tools-debian is already the newest version (2.4). 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s The following packages will be REMOVED: 98s cloud-init* python3-configobj* python3-debconf* 99s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 99s After this operation, 3256 kB disk space will be freed. 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 99s Removing cloud-init (24.1.2-0ubuntu1) ... 99s Removing python3-configobj (5.0.8-3) ... 99s Removing python3-debconf (1.5.86) ... 99s Processing triggers for man-db (2.12.0-3) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 99s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 100s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 100s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 100s invoke-rc.d: policy-rc.d denied execution of try-restart. 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s linux-generic is already the newest version (6.8.0-11.11+1). 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 101s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 101s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 103s Reading package lists... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s autopkgtest [09:34:22]: rebooting testbed after setup commands that affected boot 118s autopkgtest [09:34:36]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 121s autopkgtest [09:34:39]: @@@@@@@@@@@@@@@@@@@@ apt-source snpomatic 123s Get:1 http://ftpmaster.internal/ubuntu noble/universe snpomatic 1.0-7 (dsc) [1990 B] 123s Get:2 http://ftpmaster.internal/ubuntu noble/universe snpomatic 1.0-7 (tar) [66.5 kB] 123s Get:3 http://ftpmaster.internal/ubuntu noble/universe snpomatic 1.0-7 (diff) [9876 B] 123s gpgv: Signature made Sat Dec 23 08:22:17 2023 UTC 123s gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 123s gpgv: Can't check signature: No public key 123s dpkg-source: warning: cannot verify inline signature for ./snpomatic_1.0-7.dsc: no acceptable signature found 123s autopkgtest [09:34:41]: testing package snpomatic version 1.0-7 123s autopkgtest [09:34:41]: build not needed 123s autopkgtest [09:34:41]: test test-example: preparing testbed 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s Starting pkgProblemResolver with broken count: 0 133s Starting 2 pkgProblemResolver with broken count: 0 133s Done 133s The following additional packages will be installed: 133s libdeflate0 libhts3 libhtscodecs2 samtools snpomatic 133s Suggested packages: 133s cwltool 133s The following NEW packages will be installed: 133s autopkgtest-satdep libdeflate0 libhts3 libhtscodecs2 samtools snpomatic 133s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 1301 kB/1302 kB of archives. 133s After this operation, 2977 kB of additional disk space will be used. 133s Get:1 /tmp/autopkgtest.Zi61m5/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B] 133s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 133s Get:3 http://ftpmaster.internal/ubuntu noble/universe s390x libhtscodecs2 s390x 1.6.0-1 [87.2 kB] 133s Get:4 http://ftpmaster.internal/ubuntu noble/universe s390x libhts3 s390x 1.18+ds-1 [463 kB] 133s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x samtools s390x 1.19.2-1 [613 kB] 133s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x snpomatic s390x 1.0-7 [92.2 kB] 134s Fetched 1301 kB in 1s (2092 kB/s) 134s Selecting previously unselected package libdeflate0:s390x. 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51728 files and directories currently installed.) 134s Preparing to unpack .../0-libdeflate0_1.19-1_s390x.deb ... 134s Unpacking libdeflate0:s390x (1.19-1) ... 134s Selecting previously unselected package libhtscodecs2:s390x. 134s Preparing to unpack .../1-libhtscodecs2_1.6.0-1_s390x.deb ... 134s Unpacking libhtscodecs2:s390x (1.6.0-1) ... 134s Selecting previously unselected package libhts3:s390x. 134s Preparing to unpack .../2-libhts3_1.18+ds-1_s390x.deb ... 134s Unpacking libhts3:s390x (1.18+ds-1) ... 134s Selecting previously unselected package samtools. 134s Preparing to unpack .../3-samtools_1.19.2-1_s390x.deb ... 134s Unpacking samtools (1.19.2-1) ... 134s Selecting previously unselected package snpomatic. 134s Preparing to unpack .../4-snpomatic_1.0-7_s390x.deb ... 134s Unpacking snpomatic (1.0-7) ... 134s Selecting previously unselected package autopkgtest-satdep. 134s Preparing to unpack .../5-1-autopkgtest-satdep.deb ... 134s Unpacking autopkgtest-satdep (0) ... 134s Setting up libhtscodecs2:s390x (1.6.0-1) ... 134s Setting up libdeflate0:s390x (1.19-1) ... 134s Setting up snpomatic (1.0-7) ... 134s Setting up libhts3:s390x (1.18+ds-1) ... 134s Setting up samtools (1.19.2-1) ... 134s Setting up autopkgtest-satdep (0) ... 134s Processing triggers for man-db (2.12.0-3) ... 134s Processing triggers for libc-bin (2.39-0ubuntu6) ... 136s (Reading database ... 51844 files and directories currently installed.) 136s Removing autopkgtest-satdep (0) ... 137s autopkgtest [09:34:55]: test test-example: [----------------------- 137s [wgsim] seed = 42 137s [wgsim_core] calculating the total length of the reference sequence... 137s [wgsim_core] 1 sequences, total length: 11940 137s ref 134 C Y + 137s ref 137 G C - 137s ref 213 A R + 137s ref 276 - A + 137s ref 320 T W + 137s ref 469 A C - 137s ref 631 G T - 137s ref 678 - TTT - 137s ref 682 G K + 137s ref 796 GA - - 137s ref 974 C G - 137s ref 1056 A R + 137s ref 1156 A G - 137s ref 1170 G S + 137s ref 1298 C M + 137s ref 1326 G K + 137s ref 1343 T A - 137s ref 1422 G - - 137s ref 1639 T Y + 137s ref 1722 T G - 137s ref 2008 C M + 137s ref 2060 T K + 137s ref 2103 - G + 137s ref 2179 C M + 137s ref 2322 A M + 137s ref 2328 A W + 137s ref 2381 A T - 137s ref 2560 C Y + 137s ref 2618 G C - 137s ref 2833 - CG - 137s ref 2944 G K + 137s ref 2978 T C - 137s ref 2984 G R + 137s ref 2988 C M + 137s ref 3017 C S + 137s ref 3038 G C - 137s ref 3358 G S + 137s ref 3443 G A - 137s ref 3558 G R + 137s ref 3559 A R + 137s ref 3765 G R + 137s ref 3863 C M + 137s ref 4101 G T - 137s ref 4271 G S + 137s ref 4475 G K + 137s ref 4690 G S + 137s ref 4730 G C - 137s ref 4735 G K + 137s ref 4917 C G - 137s ref 4983 A G - 137s ref 5178 A R + 137s ref 5307 T G - 137s ref 5365 ACA - - 137s ref 5403 G S + 137s ref 5411 T C - 137s ref 5434 C S + 137s ref 5465 G - - 137s ref 5507 T Y + 137s ref 5544 A R + 137s ref 5588 - T - 137s ref 5702 A M + 137s ref 6146 T K + 137s ref 6158 G A - 137s ref 6181 G A - 137s ref 6207 A W + 137s ref 6216 T A - 137s ref 6286 T K + 137s ref 6346 GC - - 137s ref 6697 G S + 137s ref 6745 C S + 137s ref 6754 T C - 137s ref 6818 G R + 137s ref 6922 C T - 137s ref 7123 C A - 137s ref 7644 C Y + 137s ref 7699 T Y + 137s ref 7793 C T - 137s ref 7861 C T - 137s ref 7877 G C - 137s ref 7970 T G - 137s ref 7973 A G - 137s ref 8068 T W + 137s ref 8157 G C - 137s ref 8164 G R + 137s ref 8442 G K + 137s ref 8483 A R + 137s ref 8498 C Y + 137s ref 8532 A M + 137s ref 8721 C Y + 137s ref 9084 G - - 137s ref 9192 G T - 137s ref 9208 C A - 137s ref 9211 G S + 137s ref 9341 C Y + 137s ref 9372 T K + 137s ref 9393 - C + 137s ref 9597 A C - 137s ref 9621 AC - - 137s ref 9739 C A - 137s ref 9790 CATC - - 137s ref 9881 A C - 137s ref 9902 A G - 137s ref 10134 T G - 137s ref 10212 G C - 137s ref 10214 G K + 137s ref 10556 - TA - 137s ref 10751 T W + 137s ref 10777 C S + 137s ref 10799 C Y + 137s ref 10832 C S + 137s ref 10858 A G - 137s ref 11015 C Y + 137s ref 11038 C Y + 137s ref 11108 C Y + 137s ref 11179 A M + 137s ref 11217 G R + 137s ref 11275 C M + 137s ref 11290 C S + 137s ref 11481 G - - 137s ref 11566 T G - 137s ref 11655 A G - 137s ref 11771 G T - 137s Reading all chromosomes from ref.fasta ... read 1 chromosomes. 137s Indexing 1 chromosomes ... sorting ... done. 137s Setting read length to 70 137s Reading solexa pair data from reads.1.fq ... scanned 10000 solexa reads, 222 (2.22%) matched , 222 total matches, 0 skipped. 138s autopkgtest [09:34:56]: test test-example: -----------------------] 138s test-example PASS 138s autopkgtest [09:34:56]: test test-example: - - - - - - - - - - results - - - - - - - - - - 138s autopkgtest [09:34:56]: @@@@@@@@@@@@@@@@@@@@ summary 138s test-example PASS 150s Creating nova instance adt-noble-s390x-snpomatic-20240323-093238-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...