0s autopkgtest [09:35:08]: starting date and time: 2024-03-23 09:35:08+0000
  0s autopkgtest [09:35:08]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [09:35:08]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rn93qnxr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade samtools-legacy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-7.secgroup --name adt-noble-s390x-samtools-legacy-20240323-093508-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
109s autopkgtest [09:36:57]: testbed dpkg architecture: s390x
109s autopkgtest [09:36:57]: testbed apt version: 2.7.12
109s autopkgtest [09:36:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup
110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
110s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
110s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB]
110s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4029 kB]
111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [651 kB]
111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B]
111s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B]
111s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B]
111s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4144 kB]
111s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B]
111s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB]
111s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B]
113s Fetched 9558 kB in 3s (3737 kB/s)
114s Reading package lists...
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
117s Calculating upgrade...
117s The following packages will be REMOVED:
117s   libssl3
117s The following NEW packages will be installed:
117s   libssl3t64
117s The following packages have been kept back:
117s   curl
117s The following packages will be upgraded:
117s   libbsd0 libc-bin libc6 locales openssl
117s 5 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
117s Need to get 10.5 MB of archives.
117s After this operation, 241 kB of additional disk space will be used.
117s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu6 [2847 kB]
117s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu6 [654 kB]
117s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB]
117s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB]
118s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB]
118s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x locales all 2.39-0ubuntu6 [4232 kB]
118s Preconfiguring packages ...
118s Fetched 10.5 MB in 1s (10.2 MB/s)
118s (Reading database ... 
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(Reading database ... 52170 files and directories currently installed.)
118s Preparing to unpack .../libc6_2.39-0ubuntu6_s390x.deb ...
118s Unpacking libc6:s390x (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
118s Setting up libc6:s390x (2.39-0ubuntu6) ...
119s (Reading database ... 
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(Reading database ... 52170 files and directories currently installed.)
119s Preparing to unpack .../libc-bin_2.39-0ubuntu6_s390x.deb ...
119s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
119s Setting up libc-bin (2.39-0ubuntu6) ...
119s (Reading database ... 
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(Reading database ... 52170 files and directories currently installed.)
119s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ...
119s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
119s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested:
119s  wget depends on libssl3 (>= 3.0.0).
119s  tnftp depends on libssl3 (>= 3.0.0).
119s  tcpdump depends on libssl3 (>= 3.0.0).
119s  systemd-resolved depends on libssl3 (>= 3.0.0).
119s  systemd depends on libssl3 (>= 3.0.0).
119s  sudo depends on libssl3 (>= 3.0.0).
119s  s390-tools depends on libssl3 (>= 3.0.0).
119s  rsync depends on libssl3 (>= 3.0.0).
119s  python3-cryptography depends on libssl3 (>= 3.0.0).
119s  openssh-server depends on libssl3 (>= 3.0.10).
119s  openssh-client depends on libssl3 (>= 3.0.10).
119s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
119s  libsystemd-shared:s390x depends on libssl3 (>= 3.0.0).
119s  libssh-4:s390x depends on libssl3 (>= 3.0.0).
119s  libsasl2-modules:s390x depends on libssl3 (>= 3.0.0).
119s  libsasl2-2:s390x depends on libssl3 (>= 3.0.0).
119s  libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0).
119s  libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0).
119s  libnvme1 depends on libssl3 (>= 3.0.0).
119s  libkrb5-3:s390x depends on libssl3 (>= 3.0.0).
119s  libkmod2:s390x depends on libssl3 (>= 3.0.0).
119s  libfido2-1:s390x depends on libssl3 (>= 3.0.0).
119s  libcurl4:s390x depends on libssl3 (>= 3.0.0).
119s  libcryptsetup12:s390x depends on libssl3 (>= 3.0.0).
119s  kmod depends on libssl3 (>= 3.0.0).
119s  dhcpcd-base depends on libssl3 (>= 3.0.0).
119s  bind9-libs:s390x depends on libssl3 (>= 3.0.0).
119s 
119s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52170 files and directories currently installed.)
119s Removing libssl3:s390x (3.0.10-1ubuntu4) ...
119s Selecting previously unselected package libssl3t64:s390x.
119s (Reading database ... 
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(Reading database ... 52159 files and directories currently installed.)
119s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ...
119s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ...
119s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ...
119s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ...
119s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ...
119s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
120s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ...
120s Setting up locales (2.39-0ubuntu6) ...
120s Generating locales (this might take a while)...
121s   en_US.UTF-8... done
121s Generation complete.
122s Setting up openssl (3.0.13-0ubuntu2) ...
122s Setting up libbsd0:s390x (0.12.1-1) ...
122s Processing triggers for man-db (2.12.0-3) ...
122s Processing triggers for libc-bin (2.39-0ubuntu6) ...
122s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
123s Unknown architecture, assuming PC-style ttyS0
123s sh: Attempting to set up Debian/Ubuntu apt sources automatically
123s sh: Distribution appears to be Ubuntu
124s Reading package lists...
124s Building dependency tree...
124s Reading state information...
124s eatmydata is already the newest version (131-1).
124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
124s Reading package lists...
124s Building dependency tree...
124s Reading state information...
125s dbus is already the newest version (1.14.10-4ubuntu1).
125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
125s Reading package lists...
125s Building dependency tree...
125s Reading state information...
125s rng-tools-debian is already the newest version (2.4).
125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
125s Reading package lists...
125s Building dependency tree...
125s Reading state information...
125s The following packages will be REMOVED:
125s   cloud-init* python3-configobj* python3-debconf*
126s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
126s After this operation, 3256 kB disk space will be freed.
126s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52172 files and directories currently installed.)
126s Removing cloud-init (24.1.2-0ubuntu1) ...
126s Removing python3-configobj (5.0.8-3) ...
126s Removing python3-debconf (1.5.86) ...
126s Processing triggers for man-db (2.12.0-3) ...
126s (Reading database ... 
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(Reading database ... 51783 files and directories currently installed.)
126s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
127s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
127s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
127s invoke-rc.d: policy-rc.d denied execution of try-restart.
127s Reading package lists...
127s Building dependency tree...
127s Reading state information...
127s linux-generic is already the newest version (6.8.0-11.11+1).
127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
128s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
128s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
128s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
130s Reading package lists...
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Calculating upgrade...
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s autopkgtest [09:37:19]: rebooting testbed after setup commands that affected boot
146s autopkgtest [09:37:34]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024
149s autopkgtest [09:37:37]: @@@@@@@@@@@@@@@@@@@@ apt-source samtools-legacy
150s Get:1 http://ftpmaster.internal/ubuntu noble/universe samtools-legacy 0.1.19+dfsg-6ubuntu1 (dsc) [2220 B]
150s Get:2 http://ftpmaster.internal/ubuntu noble/universe samtools-legacy 0.1.19+dfsg-6ubuntu1 (tar) [371 kB]
150s Get:3 http://ftpmaster.internal/ubuntu noble/universe samtools-legacy 0.1.19+dfsg-6ubuntu1 (diff) [10.8 kB]
150s gpgv: Signature made Tue Nov 21 23:05:58 2023 UTC
150s gpgv:                using RSA key 5C7ABEA20F8630459CC8C8B5E27F2CF8458C2FA4
150s gpgv: Can't check signature: No public key
150s dpkg-source: warning: cannot verify inline signature for ./samtools-legacy_0.1.19+dfsg-6ubuntu1.dsc: no acceptable signature found
151s autopkgtest [09:37:39]: testing package samtools-legacy version 0.1.19+dfsg-6ubuntu1
151s autopkgtest [09:37:39]: build not needed
151s autopkgtest [09:37:39]: test run-unit-test: preparing testbed
157s Reading package lists...
157s Building dependency tree...
157s Reading state information...
157s Starting pkgProblemResolver with broken count: 0
157s Starting 2 pkgProblemResolver with broken count: 0
157s Done
158s The following additional packages will be installed:
158s   build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu g++
158s   g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13
158s   gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu libasan8 libatomic1 libbam-dev
158s   libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate0 libgcc-13-dev
158s   libgomp1 libhts3 libhtscodecs2 libisl23 libitm1 libmpc3 libstdc++-13-dev
158s   libubsan1 linux-libc-dev rpcsvc-proto samtools zlib1g-dev
158s Suggested packages:
158s   cpp-doc gcc-13-locales cpp-13-doc g++-multilib g++-13-multilib gcc-13-doc
158s   gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc
158s   gcc-13-multilib gdb-s390x-linux-gnu glibc-doc libstdc++-13-doc cwltool
158s Recommended packages:
158s   manpages manpages-dev libc-devtools
158s The following NEW packages will be installed:
158s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu
158s   cpp-s390x-linux-gnu g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu
158s   gcc gcc-13 gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu libasan8 libatomic1
158s   libbam-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate0
158s   libgcc-13-dev libgomp1 libhts3 libhtscodecs2 libisl23 libitm1 libmpc3
158s   libstdc++-13-dev libubsan1 linux-libc-dev rpcsvc-proto samtools zlib1g-dev
158s 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded.
158s Need to get 55.1 MB/55.1 MB of archives.
158s After this operation, 183 MB of additional disk space will be used.
158s Get:1 /tmp/autopkgtest.FpIaIa/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [728 B]
158s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu6 [20.2 kB]
158s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB]
158s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB]
158s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB]
158s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu6 [1629 kB]
158s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB]
158s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB]
158s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB]
159s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B]
159s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B]
159s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB]
159s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB]
159s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB]
159s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB]
159s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B]
159s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB]
159s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB]
159s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB]
159s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB]
159s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB]
159s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B]
159s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B]
159s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB]
159s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB]
160s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB]
160s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B]
160s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B]
160s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
160s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB]
160s Get:31 http://ftpmaster.internal/ubuntu noble/universe s390x libbam-dev s390x 0.1.19+dfsg-6ubuntu1 [128 kB]
160s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB]
160s Get:33 http://ftpmaster.internal/ubuntu noble/universe s390x libhtscodecs2 s390x 1.6.0-1 [87.2 kB]
160s Get:34 http://ftpmaster.internal/ubuntu noble/universe s390x libhts3 s390x 1.18+ds-1 [463 kB]
160s Get:35 http://ftpmaster.internal/ubuntu noble/universe s390x samtools s390x 1.19.2-1 [613 kB]
160s Fetched 55.1 MB in 2s (25.8 MB/s)
160s Selecting previously unselected package libc-dev-bin.
160s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51728 files and directories currently installed.)
160s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu6_s390x.deb ...
160s Unpacking libc-dev-bin (2.39-0ubuntu6) ...
160s Selecting previously unselected package linux-libc-dev:s390x.
160s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_s390x.deb ...
160s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ...
160s Selecting previously unselected package libcrypt-dev:s390x.
160s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_s390x.deb ...
160s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ...
160s Selecting previously unselected package rpcsvc-proto.
160s Preparing to unpack .../03-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ...
160s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
160s Selecting previously unselected package libc6-dev:s390x.
160s Preparing to unpack .../04-libc6-dev_2.39-0ubuntu6_s390x.deb ...
160s Unpacking libc6-dev:s390x (2.39-0ubuntu6) ...
160s Selecting previously unselected package libisl23:s390x.
160s Preparing to unpack .../05-libisl23_0.26-3_s390x.deb ...
160s Unpacking libisl23:s390x (0.26-3) ...
160s Selecting previously unselected package libmpc3:s390x.
160s Preparing to unpack .../06-libmpc3_1.3.1-1_s390x.deb ...
160s Unpacking libmpc3:s390x (1.3.1-1) ...
161s Selecting previously unselected package cpp-13-s390x-linux-gnu.
161s Preparing to unpack .../07-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
161s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
161s Selecting previously unselected package cpp-13.
161s Preparing to unpack .../08-cpp-13_13.2.0-17ubuntu2_s390x.deb ...
161s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
161s Selecting previously unselected package cpp-s390x-linux-gnu.
161s Preparing to unpack .../09-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
161s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
161s Selecting previously unselected package cpp.
161s Preparing to unpack .../10-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ...
161s Unpacking cpp (4:13.2.0-7ubuntu1) ...
161s Selecting previously unselected package libcc1-0:s390x.
161s Preparing to unpack .../11-libcc1-0_14-20240303-1ubuntu1_s390x.deb ...
161s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ...
161s Selecting previously unselected package libgomp1:s390x.
161s Preparing to unpack .../12-libgomp1_14-20240303-1ubuntu1_s390x.deb ...
161s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ...
161s Selecting previously unselected package libitm1:s390x.
161s Preparing to unpack .../13-libitm1_14-20240303-1ubuntu1_s390x.deb ...
161s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ...
161s Selecting previously unselected package libatomic1:s390x.
161s Preparing to unpack .../14-libatomic1_14-20240303-1ubuntu1_s390x.deb ...
161s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ...
161s Selecting previously unselected package libasan8:s390x.
161s Preparing to unpack .../15-libasan8_14-20240303-1ubuntu1_s390x.deb ...
161s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ...
161s Selecting previously unselected package libubsan1:s390x.
161s Preparing to unpack .../16-libubsan1_14-20240303-1ubuntu1_s390x.deb ...
161s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ...
161s Selecting previously unselected package libgcc-13-dev:s390x.
161s Preparing to unpack .../17-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ...
161s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ...
161s Selecting previously unselected package gcc-13-s390x-linux-gnu.
161s Preparing to unpack .../18-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
161s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
161s Selecting previously unselected package gcc-13.
161s Preparing to unpack .../19-gcc-13_13.2.0-17ubuntu2_s390x.deb ...
161s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
161s Selecting previously unselected package gcc-s390x-linux-gnu.
161s Preparing to unpack .../20-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
161s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
161s Selecting previously unselected package gcc.
161s Preparing to unpack .../21-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ...
161s Unpacking gcc (4:13.2.0-7ubuntu1) ...
161s Selecting previously unselected package libstdc++-13-dev:s390x.
161s Preparing to unpack .../22-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ...
161s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ...
162s Selecting previously unselected package g++-13-s390x-linux-gnu.
162s Preparing to unpack .../23-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
162s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
162s Selecting previously unselected package g++-13.
162s Preparing to unpack .../24-g++-13_13.2.0-17ubuntu2_s390x.deb ...
162s Unpacking g++-13 (13.2.0-17ubuntu2) ...
162s Selecting previously unselected package g++-s390x-linux-gnu.
162s Preparing to unpack .../25-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
162s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
162s Selecting previously unselected package g++.
162s Preparing to unpack .../26-g++_4%3a13.2.0-7ubuntu1_s390x.deb ...
162s Unpacking g++ (4:13.2.0-7ubuntu1) ...
162s Selecting previously unselected package build-essential.
162s Preparing to unpack .../27-build-essential_12.10ubuntu1_s390x.deb ...
162s Unpacking build-essential (12.10ubuntu1) ...
162s Selecting previously unselected package zlib1g-dev:s390x.
162s Preparing to unpack .../28-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ...
162s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ...
162s Selecting previously unselected package libbam-dev.
162s Preparing to unpack .../29-libbam-dev_0.1.19+dfsg-6ubuntu1_s390x.deb ...
162s Unpacking libbam-dev (0.1.19+dfsg-6ubuntu1) ...
162s Selecting previously unselected package libdeflate0:s390x.
162s Preparing to unpack .../30-libdeflate0_1.19-1_s390x.deb ...
162s Unpacking libdeflate0:s390x (1.19-1) ...
162s Selecting previously unselected package libhtscodecs2:s390x.
162s Preparing to unpack .../31-libhtscodecs2_1.6.0-1_s390x.deb ...
162s Unpacking libhtscodecs2:s390x (1.6.0-1) ...
162s Selecting previously unselected package libhts3:s390x.
162s Preparing to unpack .../32-libhts3_1.18+ds-1_s390x.deb ...
162s Unpacking libhts3:s390x (1.18+ds-1) ...
162s Selecting previously unselected package samtools.
162s Preparing to unpack .../33-samtools_1.19.2-1_s390x.deb ...
162s Unpacking samtools (1.19.2-1) ...
162s Selecting previously unselected package autopkgtest-satdep.
162s Preparing to unpack .../34-1-autopkgtest-satdep.deb ...
162s Unpacking autopkgtest-satdep (0) ...
162s Setting up libhtscodecs2:s390x (1.6.0-1) ...
162s Setting up libdeflate0:s390x (1.19-1) ...
162s Setting up linux-libc-dev:s390x (6.8.0-11.11) ...
162s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ...
162s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
162s Setting up libmpc3:s390x (1.3.1-1) ...
162s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ...
162s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ...
162s Setting up libcrypt-dev:s390x (1:4.4.36-4) ...
162s Setting up libasan8:s390x (14-20240303-1ubuntu1) ...
162s Setting up libisl23:s390x (0.26-3) ...
162s Setting up libc-dev-bin (2.39-0ubuntu6) ...
162s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ...
162s Setting up libitm1:s390x (14-20240303-1ubuntu1) ...
162s Setting up libhts3:s390x (1.18+ds-1) ...
162s Setting up samtools (1.19.2-1) ...
162s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
162s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ...
162s Setting up libc6-dev:s390x (2.39-0ubuntu6) ...
162s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ...
162s Setting up cpp-13 (13.2.0-17ubuntu2) ...
162s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
162s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
162s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
162s Setting up g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
162s Setting up gcc-13 (13.2.0-17ubuntu2) ...
162s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ...
162s Setting up cpp (4:13.2.0-7ubuntu1) ...
162s Setting up g++-13 (13.2.0-17ubuntu2) ...
162s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
162s Setting up gcc (4:13.2.0-7ubuntu1) ...
162s Setting up libbam-dev (0.1.19+dfsg-6ubuntu1) ...
162s Setting up g++ (4:13.2.0-7ubuntu1) ...
162s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
162s Setting up build-essential (12.10ubuntu1) ...
162s Setting up autopkgtest-satdep (0) ...
162s Processing triggers for man-db (2.12.0-3) ...
163s Processing triggers for libc-bin (2.39-0ubuntu6) ...
165s (Reading database ... 54608 files and directories currently installed.)
165s Removing autopkgtest-satdep (0) ...
165s autopkgtest [09:37:53]: test run-unit-test: [-----------------------
166s Test 1 -- calDepth
166s /tmp/autopkgtest.FpIaIa/build.TeV/src/debian/tests/run-unit-test: line 20:  1532 Segmentation fault      (core dumped) ./calDepth toy.bam
166s autopkgtest [09:37:54]: test run-unit-test: -----------------------]
167s autopkgtest [09:37:55]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
167s run-unit-test        FAIL non-zero exit status 139
167s autopkgtest [09:37:55]: @@@@@@@@@@@@@@@@@@@@ summary
167s run-unit-test        FAIL non-zero exit status 139
180s Creating nova instance adt-noble-s390x-samtools-legacy-20240323-093508-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...